Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003512
(933 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029388.1| GPI transamidase component PIG-S [Bos taurus]. 520 e-148
>ref|NP_001029388.1| GPI transamidase component PIG-S [Bos taurus].
Length = 555
Score = 520 bits (1340), Expect = e-148
Identities = 263/298 (88%), Positives = 271/298 (90%)
Frame = +1
Query: 40 TDLGVVRGKRXXXXXXXXXXXXGLPLWWKTTETYRASLPYSEISGLNSLQLRLMVPVTVV 219
TDL VVRGKR GLPLWWKTTETYRA LPYS+ISGLNSL+LRLMVPVTVV
Sbjct: 9 TDLEVVRGKRAALFFATVVIVLGLPLWWKTTETYRAPLPYSQISGLNSLKLRLMVPVTVV 68
Query: 220 FTQESVPLDDQEKLPFTVVHEREIPLKYKLKIKCRFQKAYRRALDHEEEALSLGSVQEAE 399
FTQESVPLDDQEKLPFTVVHEREIPLKYKLKIKCRFQKAYRRALDHEE ALSLG++QEAE
Sbjct: 69 FTQESVPLDDQEKLPFTVVHEREIPLKYKLKIKCRFQKAYRRALDHEEAALSLGNIQEAE 128
Query: 400 TMLAEPLEQAEGSLTVYVISEHSPLLPKDMMSYIGPKRTAVVRGIMHREAFNIIGRRIIQ 579
MLAEP EQAEGSLTVYVISE LLP+DMMSYIGPKR AVVRGI HREAFNIIGRRIIQ
Sbjct: 129 AMLAEPSEQAEGSLTVYVISERCSLLPQDMMSYIGPKRMAVVRGITHREAFNIIGRRIIQ 188
Query: 580 VAQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE 759
V QAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE
Sbjct: 189 VVQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE 248
Query: 760 GAVRRFVQPFLNALSAAGNFSVDSQILYYAMLGVKPRFQPASSSYYLATHSLPHVINP 933
GAVRR+VQPFL+ALSAAGNFSVDSQILYYA+LGV PRF ASSSYYLA HSLPHVINP
Sbjct: 249 GAVRRYVQPFLSALSAAGNFSVDSQILYYAVLGVNPRFDSASSSYYLAAHSLPHVINP 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,182,055
Number of extensions: 970083
Number of successful extensions: 3865
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3861
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,306,398
Effective search space: 2990037182
Effective search space used: 2990037182
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003512
(933 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548290.2| PREDICTED: similar to phosphatidylinositol glyc... 506 e-144
>ref|XP_548290.2| PREDICTED: similar to phosphatidylinositol glycan, class S [Canis
familiaris].
Length = 555
Score = 506 bits (1304), Expect = e-144
Identities = 252/298 (84%), Positives = 271/298 (90%)
Frame = +1
Query: 40 TDLGVVRGKRXXXXXXXXXXXXGLPLWWKTTETYRASLPYSEISGLNSLQLRLMVPVTVV 219
TDL VVRGKR GLPLWWKTTETYRA LPYS+ISGLN+LQLRLMVPVTVV
Sbjct: 9 TDLEVVRGKRAALFFAAVAILLGLPLWWKTTETYRAPLPYSQISGLNALQLRLMVPVTVV 68
Query: 220 FTQESVPLDDQEKLPFTVVHEREIPLKYKLKIKCRFQKAYRRALDHEEEALSLGSVQEAE 399
FT+ESVPLDDQEKLPFTVV EREIPLKYK+KIKC FQKAYRRAL+HEE ALSLGS+QEAE
Sbjct: 69 FTRESVPLDDQEKLPFTVVQEREIPLKYKMKIKCLFQKAYRRALEHEEAALSLGSMQEAE 128
Query: 400 TMLAEPLEQAEGSLTVYVISEHSPLLPKDMMSYIGPKRTAVVRGIMHREAFNIIGRRIIQ 579
TMLA+ +QAEGSLTVYVISEHS LLP+DMMSYIGP+RTAVVRGIMHREA NI+G ++IQ
Sbjct: 129 TMLAKSQKQAEGSLTVYVISEHSSLLPQDMMSYIGPERTAVVRGIMHREALNIVGHQVIQ 188
Query: 580 VAQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE 759
VAQAMSLTEDVLAAAL+DHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE
Sbjct: 189 VAQAMSLTEDVLAAALSDHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE 248
Query: 760 GAVRRFVQPFLNALSAAGNFSVDSQILYYAMLGVKPRFQPASSSYYLATHSLPHVINP 933
GAV+R+VQPFL+ALSA GNFSVDSQILYYA+LGV PRF PASSSYYLA HSLPH +NP
Sbjct: 249 GAVQRYVQPFLSALSAVGNFSVDSQILYYAVLGVNPRFDPASSSYYLAKHSLPHALNP 306
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,841,434
Number of extensions: 1005294
Number of successful extensions: 3790
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3783
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 208
Effective length of database: 15,440,896
Effective search space: 3211706368
Effective search space used: 3211706368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003512
(933 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149975.1| GPI transamidase component PIG-S [Homo sapiens]. 520 e-148
>ref|NP_149975.1| GPI transamidase component PIG-S [Homo sapiens].
Length = 555
Score = 520 bits (1340), Expect = e-148
Identities = 262/298 (87%), Positives = 272/298 (91%)
Frame = +1
Query: 40 TDLGVVRGKRXXXXXXXXXXXXGLPLWWKTTETYRASLPYSEISGLNSLQLRLMVPVTVV 219
T L V RGKR GLPLWWKTTETYRASLPYS+ISGLN+LQLRLMVPVTVV
Sbjct: 9 THLEVARGKRAALFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLRLMVPVTVV 68
Query: 220 FTQESVPLDDQEKLPFTVVHEREIPLKYKLKIKCRFQKAYRRALDHEEEALSLGSVQEAE 399
FT+ESVPLDDQEKLPFTVVHEREIPLKYK+KIKCRFQKAYRRALDHEEEALS GSVQEAE
Sbjct: 69 FTRESVPLDDQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALSSGSVQEAE 128
Query: 400 TMLAEPLEQAEGSLTVYVISEHSPLLPKDMMSYIGPKRTAVVRGIMHREAFNIIGRRIIQ 579
ML EP EQAEGSLTVYVISEHS LLP+DMMSYIGPKRTAVVRGIMHREAFNIIGRRI+Q
Sbjct: 129 AMLDEPQEQAEGSLTVYVISEHSSLLPQDMMSYIGPKRTAVVRGIMHREAFNIIGRRIVQ 188
Query: 580 VAQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE 759
VAQAMSLTEDVLAAALADHLPEDKWS++KRRPLKSSLGYEITFSLLNPDPKSHDV+WDIE
Sbjct: 189 VAQAMSLTEDVLAAALADHLPEDKWSAEKRRPLKSSLGYEITFSLLNPDPKSHDVYWDIE 248
Query: 760 GAVRRFVQPFLNALSAAGNFSVDSQILYYAMLGVKPRFQPASSSYYLATHSLPHVINP 933
GAVRR+VQPFLNAL AAGNFSVDSQILYYAMLGV PRF ASSSYYL HSLPHVINP
Sbjct: 249 GAVRRYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSSYYLDMHSLPHVINP 306
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,048,364
Number of extensions: 977835
Number of successful extensions: 3871
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3866
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,934,836
Effective search space: 3121380724
Effective search space used: 3121380724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003512
(933 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958808.1| GPI transamidase component PIG-S [Mus musculus]. 519 e-147
>ref|NP_958808.1| GPI transamidase component PIG-S [Mus musculus].
Length = 555
Score = 519 bits (1336), Expect = e-147
Identities = 260/298 (87%), Positives = 273/298 (91%)
Frame = +1
Query: 40 TDLGVVRGKRXXXXXXXXXXXXGLPLWWKTTETYRASLPYSEISGLNSLQLRLMVPVTVV 219
TDL VVRGKR GLPLWWKTTETYRA LPYS+ISGLN+L LRLMVPVTVV
Sbjct: 9 TDLEVVRGKRSALFFAAVAILLGLPLWWKTTETYRAPLPYSDISGLNALLLRLMVPVTVV 68
Query: 220 FTQESVPLDDQEKLPFTVVHEREIPLKYKLKIKCRFQKAYRRALDHEEEALSLGSVQEAE 399
FT++SVPLDDQEKLPFTVVHEREIPLKYK+KIKCRFQKAYRRAL+HEEEALSLGSV EAE
Sbjct: 69 FTRDSVPLDDQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALEHEEEALSLGSVHEAE 128
Query: 400 TMLAEPLEQAEGSLTVYVISEHSPLLPKDMMSYIGPKRTAVVRGIMHREAFNIIGRRIIQ 579
MLAEP +QAEGSLTVYVISEHS LLP+DMMSYIGP+RTAVVRG++HREAFNIIGRRI+Q
Sbjct: 129 AMLAEPEKQAEGSLTVYVISEHSSLLPQDMMSYIGPERTAVVRGLIHREAFNIIGRRIVQ 188
Query: 580 VAQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE 759
VAQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE
Sbjct: 189 VAQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE 248
Query: 760 GAVRRFVQPFLNALSAAGNFSVDSQILYYAMLGVKPRFQPASSSYYLATHSLPHVINP 933
GAV+RFVQPFLN LS AGNFSVDSQILYYAMLGV PRF PASSSY LA HSLPHVINP
Sbjct: 249 GAVQRFVQPFLNRLSVAGNFSVDSQILYYAMLGVNPRFDPASSSYSLAMHSLPHVINP 306
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,414,656
Number of extensions: 817389
Number of successful extensions: 3165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3159
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 210
Effective length of database: 12,583,923
Effective search space: 2642623830
Effective search space used: 2642623830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003512
(933 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358230.1| PREDICTED: GPI transamidase component PIG-S-... 554 e-158
Alignment gi|XP_003131808.2| PREDICTED: GPI transamidase component PIG-S-... 414 e-116
Alignment gi|XP_003358227.1| PREDICTED: GPI transamidase component PIG-S-... 294 4e-80
>ref|XP_003358230.1| PREDICTED: GPI transamidase component PIG-S-like [Sus scrofa].
Length = 555
Score = 554 bits (1427), Expect = e-158
Identities = 281/298 (94%), Positives = 281/298 (94%)
Frame = +1
Query: 40 TDLGVVRGKRXXXXXXXXXXXXGLPLWWKTTETYRASLPYSEISGLNSLQLRLMVPVTVV 219
TDL VVRGKR GLPLWWKTTETYRASLPYSEISGLNSLQLRLMVPVTVV
Sbjct: 9 TDLEVVRGKRAALFFAAVAIVLGLPLWWKTTETYRASLPYSEISGLNSLQLRLMVPVTVV 68
Query: 220 FTQESVPLDDQEKLPFTVVHEREIPLKYKLKIKCRFQKAYRRALDHEEEALSLGSVQEAE 399
FTQESVPLDDQEKLPFTVVHEREIPLKYKLKIKCRFQKAYRRALDHEEEALS GSVQEAE
Sbjct: 69 FTQESVPLDDQEKLPFTVVHEREIPLKYKLKIKCRFQKAYRRALDHEEEALSSGSVQEAE 128
Query: 400 TMLAEPLEQAEGSLTVYVISEHSPLLPKDMMSYIGPKRTAVVRGIMHREAFNIIGRRIIQ 579
TMLAEPLEQAEGSLTVYVISEHSPLLPKDMMSYIGPKRTAVVRGI HREAFNIIGRRIIQ
Sbjct: 129 TMLAEPLEQAEGSLTVYVISEHSPLLPKDMMSYIGPKRTAVVRGITHREAFNIIGRRIIQ 188
Query: 580 VAQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE 759
VAQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE
Sbjct: 189 VAQAMSLTEDVLAAALADHLPEDKWSSDKRRPLKSSLGYEITFSLLNPDPKSHDVHWDIE 248
Query: 760 GAVRRFVQPFLNALSAAGNFSVDSQILYYAMLGVKPRFQPASSSYYLATHSLPHVINP 933
GAVRRFVQPFLNALSAAGNFSVDSQILYYAMLGV PRF PASSSYYLATHSLPHVINP
Sbjct: 249 GAVRRFVQPFLNALSAAGNFSVDSQILYYAMLGVNPRFDPASSSYYLATHSLPHVINP 306
>ref|XP_003131808.2| PREDICTED: GPI transamidase component PIG-S-like, partial [Sus
scrofa].
Length = 459
Score = 414 bits (1064), Expect = e-116
Identities = 208/210 (99%), Positives = 208/210 (99%)
Frame = +1
Query: 304 KLKIKCRFQKAYRRALDHEEEALSLGSVQEAETMLAEPLEQAEGSLTVYVISEHSPLLPK 483
KLKIKCRFQKAYRRALDHEEEALSLGSVQEAETMLAEPLEQAEGSLTVYVISEHSPLLPK
Sbjct: 1 KLKIKCRFQKAYRRALDHEEEALSLGSVQEAETMLAEPLEQAEGSLTVYVISEHSPLLPK 60
Query: 484 DMMSYIGPKRTAVVRGIMHREAFNIIGRRIIQVAQAMSLTEDVLAAALADHLPEDKWSSD 663
DMMSYIGPKRTAVVRGIMHREAFNIIGRRIIQVAQAMSLTEDVLAAALADHLPEDKWSSD
Sbjct: 61 DMMSYIGPKRTAVVRGIMHREAFNIIGRRIIQVAQAMSLTEDVLAAALADHLPEDKWSSD 120
Query: 664 KRRPLKSSLGYEITFSLLNPDPKSHDVHWDIEGAVRRFVQPFLNALSAAGNFSVDSQILY 843
KRRPLKSSLGYEITFSLLNPDPKSHDVHWDIEGAVRRFVQPFLNALSAAGNFSVDSQILY
Sbjct: 121 KRRPLKSSLGYEITFSLLNPDPKSHDVHWDIEGAVRRFVQPFLNALSAAGNFSVDSQILY 180
Query: 844 YAMLGVKPRFQPASSSYYLATHSLPHVINP 933
YAMLGV PRF PASSSYYLATHSLPHVINP
Sbjct: 181 YAMLGVNPRFDPASSSYYLATHSLPHVINP 210
>ref|XP_003358227.1| PREDICTED: GPI transamidase component PIG-S-like [Sus scrofa].
Length = 432
Score = 294 bits (753), Expect = 4e-80
Identities = 146/149 (97%), Positives = 146/149 (97%)
Frame = +1
Query: 487 MMSYIGPKRTAVVRGIMHREAFNIIGRRIIQVAQAMSLTEDVLAAALADHLPEDKWSSDK 666
MMSYIGPKRTAVVRGI HREAFNIIGRRIIQVAQAMSLTEDVLAAALADHLPEDKWSSDK
Sbjct: 1 MMSYIGPKRTAVVRGITHREAFNIIGRRIIQVAQAMSLTEDVLAAALADHLPEDKWSSDK 60
Query: 667 RRPLKSSLGYEITFSLLNPDPKSHDVHWDIEGAVRRFVQPFLNALSAAGNFSVDSQILYY 846
RRPLKSSLGYEITFSLLNPDPKSHDVHWDIEGAVRRFVQPFLNALSAAGNFSVDSQILYY
Sbjct: 61 RRPLKSSLGYEITFSLLNPDPKSHDVHWDIEGAVRRFVQPFLNALSAAGNFSVDSQILYY 120
Query: 847 AMLGVKPRFQPASSSYYLATHSLPHVINP 933
AMLGV PRF PASSSYYLATHSLPHVINP
Sbjct: 121 AMLGVNPRFDPASSSYYLATHSLPHVINP 149
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,716,694
Number of extensions: 624813
Number of successful extensions: 2584
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2582
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 212
Effective length of database: 8,879,129
Effective search space: 1882375348
Effective search space used: 1882375348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003512
(933 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 418 e-114
Sscrofa_Chr12 410 e-112
>Sscrofa_Chr18
|| Length = 61220071
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Minus
Query: 482 aggacatgatgagctacatcgggcccaagaggaccgcggtcgtgcgggggatcatgcacc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171713 aggacatgatgagctacatcgggcccaagaggaccgcggtcgtgcgggggatcatgcacc 171654
Query: 542 gggaggccttcaacatcatcggccgccgcatcatccaggtcgcccaggccatgtctctga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171653 gggaggccttcaacatcatcggccgccgcatcatccaggtcgcccaggccatgtctctga 171594
Query: 602 cggaggacgtgctcgctgcggctctggccgaccaccttccagaggacaagtggagctctg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171593 cggaggacgtgctcgctgcggctctggccgaccaccttccagaggacaagtggagctctg 171534
Query: 662 ataagaggcggcccctcaagtccagcttggg 692
|||||||||||||||||||||||||||||||
Sbjct: 171533 ataagaggcggcccctcaagtccagcttggg 171503
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 691 ggctacgaaatcaccttcagtttactcaaccctgaccccaagtcccatgacgtccactgg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171213 ggctacgaaatcaccttcagtttactcaaccctgaccccaagtcccatgacgtccactgg 171154
Query: 751 gacattgagggggctgtccggcgctttgtgcagcccttcctgaatgccctcagtgctgcg 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171153 gacattgagggggctgtccggcgctttgtgcagcccttcctgaatgccctcagtgctgcg 171094
Query: 811 ggcaacttctcagtggactctcag 834
||||||||||||||||||||||||
Sbjct: 171093 ggcaacttctcagtggactctcag 171070
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 390 agaggctgaaaccatgttagctgagccgctggagcaagccgagggctccctgacagtgta 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173060 agaggctgaaaccatgttagctgagccgctggagcaagccgagggctccctgacagtgta 173001
Query: 450 tgtgatctcagaacactccccacttctccccaagg 484
|||||||||||||||||||||||||||||||||||
Sbjct: 173000 tgtgatctcagaacactccccacttctccccaagg 172966
Score = 178 bits (90), Expect = 4e-42
Identities = 99/102 (97%)
Strand = Plus / Minus
Query: 832 cagatcctttactatgccatgttgggggtaaaaccccgcttccaaccggcttcctccagc 891
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct: 169996 cagatcctttactatgccatgttgggggtaaacccccgcttcgacccggcttcctccagc 169937
Query: 892 tactacttggccacgcacagcctcccccatgtcatcaaccca 933
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169936 tactacttggccacgcacagcctcccccatgtcatcaaccca 169895
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 302 acaaactgaaaatcaaatgccgtttccagaaggcctatcggagggctttggaccacgagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173417 acaaactgaaaatcaaatgccgtttccagaaggcctatcggagggctttggaccacgagg 173358
Query: 362 aggaggccctctcattgggcagtgtacaag 391
||||||||||||||||||||||||||||||
Sbjct: 173357 aggaggccctctcattgggcagtgtacaag 173328
>Sscrofa_Chr12
|| Length = 63588571
Score = 410 bits (207), Expect = e-112
Identities = 210/211 (99%)
Strand = Plus / Minus
Query: 482 aggacatgatgagctacatcgggcccaagaggaccgcggtcgtgcgggggatcatgcacc 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 46680856 aggacatgatgagctacatcgggcccaagaggaccgcggtcgtgcgggggatcacgcacc 46680797
Query: 542 gggaggccttcaacatcatcggccgccgcatcatccaggtcgcccaggccatgtctctga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46680796 gggaggccttcaacatcatcggccgccgcatcatccaggtcgcccaggccatgtctctga 46680737
Query: 602 cggaggacgtgctcgctgcggctctggccgaccaccttccagaggacaagtggagctctg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46680736 cggaggacgtgctcgctgcggctctggccgaccaccttccagaggacaagtggagctctg 46680677
Query: 662 ataagaggcggcccctcaagtccagcttggg 692
|||||||||||||||||||||||||||||||
Sbjct: 46680676 ataagaggcggcccctcaagtccagcttggg 46680646
Score = 410 bits (207), Expect = e-112
Identities = 210/211 (99%)
Strand = Plus / Minus
Query: 482 aggacatgatgagctacatcgggcccaagaggaccgcggtcgtgcgggggatcatgcacc 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 46799924 aggacatgatgagctacatcgggcccaagaggaccgcggtcgtgcgggggatcacgcacc 46799865
Query: 542 gggaggccttcaacatcatcggccgccgcatcatccaggtcgcccaggccatgtctctga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46799864 gggaggccttcaacatcatcggccgccgcatcatccaggtcgcccaggccatgtctctga 46799805
Query: 602 cggaggacgtgctcgctgcggctctggccgaccaccttccagaggacaagtggagctctg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46799804 cggaggacgtgctcgctgcggctctggccgaccaccttccagaggacaagtggagctctg 46799745
Query: 662 ataagaggcggcccctcaagtccagcttggg 692
|||||||||||||||||||||||||||||||
Sbjct: 46799744 ataagaggcggcccctcaagtccagcttggg 46799714
Score = 278 bits (140), Expect = 5e-72
Identities = 143/144 (99%)
Strand = Plus / Minus
Query: 691 ggctacgaaatcaccttcagtttactcaaccctgaccccaagtcccatgacgtccactgg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46680356 ggctacgaaatcaccttcagtttactcaaccctgaccccaagtcccatgacgtccactgg 46680297
Query: 751 gacattgagggggctgtccggcgctttgtgcagcccttcctgaatgccctcagtgctgcg 810
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46680296 gacattgagggggctgtccggcgctttgtgcagcccttcctgaatgccctcagtgctgca 46680237
Query: 811 ggcaacttctcagtggactctcag 834
||||||||||||||||||||||||
Sbjct: 46680236 ggcaacttctcagtggactctcag 46680213
Score = 278 bits (140), Expect = 5e-72
Identities = 143/144 (99%)
Strand = Plus / Minus
Query: 691 ggctacgaaatcaccttcagtttactcaaccctgaccccaagtcccatgacgtccactgg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46799424 ggctacgaaatcaccttcagtttactcaaccctgaccccaagtcccatgacgtccactgg 46799365
Query: 751 gacattgagggggctgtccggcgctttgtgcagcccttcctgaatgccctcagtgctgcg 810
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46799364 gacattgagggggctgtccggcgctttgtgcagcccttcctgaatgccctcagtgctgca 46799305
Query: 811 ggcaacttctcagtggactctcag 834
||||||||||||||||||||||||
Sbjct: 46799304 ggcaacttctcagtggactctcag 46799281
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 51 ggtggtccgcggcaagcgcgccgcactcttcttcgctgcggtggccatcgtgctggggct 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46805119 ggtggtccgcggcaagcgcgccgcactcttcttcgctgcggtggccatcgtgctggggct 46805060
Query: 111 gccgctctggtggaagaccacggagacctatcgggcctcgttgccttactctgagatcag 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46805059 gccgctctggtggaagaccacggagacctatcgggcctcgttgccttactctgagatcag 46805000
Query: 171 tgggctgaattccttgcag 189
|||||||||||||||||||
Sbjct: 46804999 tgggctgaattccttgcag 46804981
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 183 cttgcagctccggctcatggtgcccgtcactgtcgtgtttacccaggagtcagtgccatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46804902 cttgcagctccggctcatggtgcccgtcactgtcgtgtttacccaggagtcagtgccatt 46804843
Query: 243 ggacgaccaggagaagctgcccttcaccgttgtgcatgaaagagagatccctctgaagt 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46804842 ggacgaccaggagaagctgcccttcaccgttgtgcatgaaagagagatccctctgaagt 46804784
Score = 180 bits (91), Expect = 9e-43
Identities = 94/95 (98%)
Strand = Plus / Minus
Query: 390 agaggctgaaaccatgttagctgagccgctggagcaagccgagggctccctgacagtgta 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46801284 agaggctgaaaccatgttagctgagccgctggagcaagccgagggctccctgacagtgta 46801225
Query: 450 tgtgatctcagaacactccccacttctccccaagg 484
|||||||||||| ||||||||||||||||||||||
Sbjct: 46801224 tgtgatctcagagcactccccacttctccccaagg 46801190
Score = 178 bits (90), Expect = 4e-42
Identities = 99/102 (97%)
Strand = Plus / Minus
Query: 832 cagatcctttactatgccatgttgggggtaaaaccccgcttccaaccggcttcctccagc 891
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct: 46679102 cagatcctttactatgccatgttgggggtaaacccccgcttcgacccggcttcctccagc 46679043
Query: 892 tactacttggccacgcacagcctcccccatgtcatcaaccca 933
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46679042 tactacttggccacgcacagcctcccccatgtcatcaaccca 46679001
Score = 178 bits (90), Expect = 4e-42
Identities = 99/102 (97%)
Strand = Plus / Minus
Query: 832 cagatcctttactatgccatgttgggggtaaaaccccgcttccaaccggcttcctccagc 891
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct: 46798171 cagatcctttactatgccatgttgggggtaaacccccgcttcgacccggcttcctccagc 46798112
Query: 892 tactacttggccacgcacagcctcccccatgtcatcaaccca 933
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46798111 tactacttggccacgcacagcctcccccatgtcatcaaccca 46798070
Score = 163 bits (82), Expect = 2e-37
Identities = 88/90 (97%)
Strand = Plus / Minus
Query: 302 acaaactgaaaatcaaatgccgtttccagaaggcctatcggagggctttggaccacgagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 46801631 acaaactgaaaatcaaatgccgtttccagaaggcctatcggagggctttggaccatgagg 46801572
Query: 362 aggaggccctctcattgggcagtgtacaag 391
||||||||||||||| ||||||||||||||
Sbjct: 46801571 aggaggccctctcatcgggcagtgtacaag 46801542
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 2 aatcggaaggaggcatggcggccgccggggctgcggctacggacttagg 50
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46805425 aatcggaaggaggcatggcggccgccggggctgcggctacggacttagg 46805377
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,606,978
Number of extensions: 116
Number of successful extensions: 116
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 16
Length of query: 933
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 912
Effective length of database: 2,808,413,156
Effective search space: 2561272798272
Effective search space used: 2561272798272
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)