Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003519
(1157 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030408.1| cleavage and polyadenylation specificity fac... 470 e-132
Alignment gi|XP_001788072.1| PREDICTED: cleavage and polyadenylation spec... 259 4e-69
>ref|NP_001030408.1| cleavage and polyadenylation specificity factor subunit 5 [Bos
taurus].
Length = 227
Score = 470 bits (1209), Expect = e-132
Identities = 225/227 (99%), Positives = 226/227 (99%)
Frame = +2
Query: 164 MSVVPPNRSQTGWPRGVNQYGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 343
MSVVPPNRSQTGWPRGV Q+GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
Sbjct: 1 MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 60
Query: 344 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 523
AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
Sbjct: 61 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 120
Query: 524 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 703
LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
Sbjct: 121 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 180
Query: 704 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 844
EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
Sbjct: 181 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
>ref|XP_001788072.1| PREDICTED: cleavage and polyadenylation specific factor 5-like [Bos
taurus].
Length = 132
Score = 259 bits (661), Expect = 4e-69
Identities = 120/126 (95%), Positives = 122/126 (96%)
Frame = +2
Query: 467 TFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYI 646
+FFKLPGGELNPGEDEVEGLK LMTEILGRQDGVLQDWVIDDC GNWWRPNFEPP YPYI
Sbjct: 7 SFFKLPGGELNPGEDEVEGLKHLMTEILGRQDGVLQDWVIDDCTGNWWRPNFEPPHYPYI 66
Query: 647 PAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSR 826
PAHITKPKEH+KLFLVQLQEKALFAVPKNYKL AAPLFELYDNAPGYGPIISSLPQLLSR
Sbjct: 67 PAHITKPKEHRKLFLVQLQEKALFAVPKNYKLAAAPLFELYDNAPGYGPIISSLPQLLSR 126
Query: 827 FNFIYN 844
FNFIYN
Sbjct: 127 FNFIYN 132
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,030,908
Number of extensions: 1003716
Number of successful extensions: 3428
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3422
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,240,222
Effective search space: 4001502382
Effective search space used: 4001502382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003519
(1157 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535298.2| PREDICTED: similar to nudix (nucleoside diphosp... 472 e-133
Alignment gi|XP_539001.2| PREDICTED: similar to nudix (nucleoside diphosp... 402 e-112
>ref|XP_535298.2| PREDICTED: similar to nudix (nucleoside diphosphate linked moiety
X)-type motif 21 [Canis familiaris].
Length = 227
Score = 472 bits (1215), Expect = e-133
Identities = 226/227 (99%), Positives = 227/227 (100%)
Frame = +2
Query: 164 MSVVPPNRSQTGWPRGVNQYGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 343
MSVVPPNRSQTGWPRGVNQ+GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
Sbjct: 1 MSVVPPNRSQTGWPRGVNQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 60
Query: 344 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 523
AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
Sbjct: 61 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 120
Query: 524 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 703
LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
Sbjct: 121 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 180
Query: 704 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 844
EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
Sbjct: 181 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
>ref|XP_539001.2| PREDICTED: similar to nudix (nucleoside diphosphate linked moiety
X)-type motif 21 [Canis familiaris].
Length = 231
Score = 402 bits (1034), Expect = e-112
Identities = 194/196 (98%), Positives = 195/196 (99%)
Frame = +2
Query: 257 TLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRL 436
TLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEH+L
Sbjct: 36 TLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHQL 95
Query: 437 PHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRP 616
PHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRP
Sbjct: 96 PHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRP 155
Query: 617 NFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPI 796
NFE PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPI
Sbjct: 156 NFEHPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPI 215
Query: 797 ISSLPQLLSRFNFIYN 844
ISSLPQLLSRFNFIYN
Sbjct: 216 ISSLPQLLSRFNFIYN 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,873,450
Number of extensions: 1031100
Number of successful extensions: 3722
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3720
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 280
Effective length of database: 15,374,224
Effective search space: 4304782720
Effective search space used: 4304782720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003519
(1157 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008937.1| cleavage and polyadenylation specificity factor... 470 e-132
>ref|NP_008937.1| cleavage and polyadenylation specificity factor subunit 5 [Homo
sapiens].
Length = 227
Score = 470 bits (1209), Expect = e-132
Identities = 225/227 (99%), Positives = 226/227 (99%)
Frame = +2
Query: 164 MSVVPPNRSQTGWPRGVNQYGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 343
MSVVPPNRSQTGWPRGV Q+GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
Sbjct: 1 MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 60
Query: 344 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 523
AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
Sbjct: 61 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 120
Query: 524 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 703
LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
Sbjct: 121 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 180
Query: 704 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 844
EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
Sbjct: 181 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,005,331
Number of extensions: 1008184
Number of successful extensions: 3422
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3415
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,868,908
Effective search space: 4178163148
Effective search space used: 4178163148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003519
(1157 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080899.1| cleavage and polyadenylation specificity factor... 472 e-133
>ref|NP_080899.1| cleavage and polyadenylation specificity factor subunit 5 [Mus
musculus].
Length = 227
Score = 472 bits (1215), Expect = e-133
Identities = 226/227 (99%), Positives = 227/227 (100%)
Frame = +2
Query: 164 MSVVPPNRSQTGWPRGVNQYGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 343
MSVVPPNRSQTGWPRGVNQ+GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
Sbjct: 1 MSVVPPNRSQTGWPRGVNQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 60
Query: 344 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 523
AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
Sbjct: 61 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 120
Query: 524 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 703
LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
Sbjct: 121 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 180
Query: 704 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 844
EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
Sbjct: 181 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 227
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,012,363
Number of extensions: 847467
Number of successful extensions: 2746
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2743
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 282
Effective length of database: 12,523,851
Effective search space: 3531725982
Effective search space used: 3531725982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003519
(1157 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361073.1| PREDICTED: cleavage and polyadenylation spec... 330 9e-91
>ref|XP_003361073.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
5-like, partial [Sus scrofa].
Length = 157
Score = 330 bits (846), Expect = 9e-91
Identities = 156/157 (99%), Positives = 157/157 (100%)
Frame = +2
Query: 164 MSVVPPNRSQTGWPRGVNQYGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 343
MSVVPPNRSQTGWPRGVNQYGNKYIQQTKPL+LERTINLYPLTNYTFGTKEPLYEKDSSV
Sbjct: 1 MSVVPPNRSQTGWPRGVNQYGNKYIQQTKPLSLERTINLYPLTNYTFGTKEPLYEKDSSV 60
Query: 344 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 523
AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
Sbjct: 61 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 120
Query: 524 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQ 634
LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQ
Sbjct: 121 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQ 157
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,232,818
Number of extensions: 658935
Number of successful extensions: 2195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2190
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 284
Effective length of database: 8,829,335
Effective search space: 2507531140
Effective search space used: 2507531140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003519
(1157 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1215 0.0
Sscrofa_Chr03 749 0.0
gb|JH118949.1| Sus scrofa unplaced genomic scaffold ChrUScaf3685 728 0.0
gb|GL893413.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 398 e-108
Sscrofa_Chr16 331 5e-88
gb|GL896493.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 165 7e-38
gb|JH118587.1| Sus scrofa unplaced genomic scaffold ChrUScaf1163 141 1e-30
Sscrofa_Chr13 101 8e-19
Sscrofa_Chr09 90 3e-15
>Sscrofa_Chr01
|| Length = 315321322
Score = 1215 bits (613), Expect = 0.0
Identities = 774/823 (94%), Gaps = 6/823 (0%)
Strand = Plus / Minus
Query: 110 aagtctccctgcctccctctttccgctcgctgctagtgccgggagctcgctagcatgtct 169
|||||||||||||||||||||||| ||||||||||||||| | |||| || ||||||||
Sbjct: 146599809 aagtctccctgcctccctctttccactcgctgctagtgccag-agcttgccagcatgtcc 146599751
Query: 170 gtggtgccgcccaatcgctcgcagaccggctggccccgg-ggggtcaaccagtatggcaa 228
|||||||||||||||| || |||||| ||||| ||| | ||||||||||||||||||||
Sbjct: 146599750 gtggtgccgcccaatcagtcacagaccagctgggcccagaggggtcaaccagtatggcaa 146599691
Query: 229 caagtacatccagcagaccaagcccctcaccctggagcgcaccatcaacctgtaccctct 288
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 146599690 caagtacatgcagcagaccaagcgcctcaccctggagcgcaccatcaacctgtaccctct 146599631
Query: 289 taccaattatacttttggtacaaaagagcccctctatgagaaggacagctctgttgccgc 348
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 146599630 taccaactatacttttggtacaaaagagcccctctat---aaggacagctctgttgccac 146599574
Query: 349 cagatttcagcgcatgagggaggaatttgataaaattggcatgaggaggactgtagaagg 408
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146599573 cagatttcagcacatgagggaggaatttgataaaattggcatgaggaggactgtagaagg 146599514
Query: 409 agttttgattgtccatgagcaccggctaccccatgtgttactgcttcagctgggaacaac 468
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 146599513 ggttttgattgtccatgagcaccagctaccccatgtgttactgctacagctggaaacaac 146599454
Query: 469 tttcttcaaattacccggtggtgagcttaacccaggagaagatgaagt-tgaaggactaa 527
||||||||||||||| |||||||||||||| || ||||||||||||| |||||||| ||
Sbjct: 146599453 tttcttcaaattacctggtggtgagcttaatacaagagaagatgaagtctgaaggacaaa 146599394
Query: 528 aacgcttaatgacagagatactgggtcgtcaagatggagtcctgcaagactgggtcattg 587
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 146599393 aacacttaatgacagagatactgggttgtcaagatggagtcctgcaagactgggtcattg 146599334
Query: 588 atgattgcattggtaactggtggagaccaaattttgaacctcctcagtatccatatattc 647
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 146599333 atgattgcattggtaactggtggagaccaaattgtgaacctcctcagtatccatatattc 146599274
Query: 648 ctgcacacattacaaaacctaaggaacataagaagttgtttttggttcagcttcaagaga 707
||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||
Sbjct: 146599273 ctgcacacattacaaaacctaaggaacatcagaaattgttttgggttcagcttcaagaga 146599214
Query: 708 aagccttattcgcagtccctaaaaattacaagctggttgctgcaccactgtttgaactgt 767
|||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 146599213 aagccttattcgcaatccctaaaaattacaagctagtagctgcaccactatttgaactgt 146599154
Query: 768 atgacaatgcacccggatatggacccatcatttctagtctccctcagcttttgagcaggt 827
|||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 146599153 atgacaatgcacccagatatggacccataatttctagactccctcagcttttgagcaggt 146599094
Query: 828 tcaattttatatacaactgaattcctgcacagcggagaagtaagagaagccatctctgtg 887
||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct: 146599093 tcagttttatatacaactgaattcctgcacagcagaaaagtaagagaagctatctctgtg 146599034
Query: 888 agcacagctatacacagtgtagaataaacatgctagtaaggtg 930
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 146599033 agcacagctatacacagtgtagaataaacatgctagcaaggtg 146598991
Score = 1021 bits (515), Expect = 0.0
Identities = 714/779 (91%), Gaps = 1/779 (0%)
Strand = Plus / Plus
Query: 152 gagctcgctagcatgtctgtggtgccgcccaatcgctcgcagaccggctggccccggggg 211
|||||| | |||||||| ||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 94449267 gagctcaccagcatgtccatggtgccgcccggtcgctcacagaccagctggccccggggg 94449326
Query: 212 gtcaaccagtatggcaacaagtacatccagcagaccaagcccctcaccctggagcgcacc 271
|| |||| ||||||||||||||||||||||||||||||||||| | ||| | || ||||
Sbjct: 94449327 gtttaccaatatggcaacaagtacatccagcagaccaagccccttagcctcgtgctcacc 94449386
Query: 272 atcaacctgtaccctcttaccaattatacttttggtacaaaagagcccctctatgagaag 331
|| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 94449387 ataaacctgtaccctcttattaattatacttttggtacaaaagagcccctgtatgagaag 94449446
Query: 332 gacagctctgttgccgccagatttcagcgcatgagggaggaatttgataaaattggcatg 391
||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct: 94449447 gacagctttgttgccgccagatttcagtgcatgagcgaggaatttgataaatttggcatg 94449506
Query: 392 aggaggactgtagaaggagttttgattgtccatgagcaccggctaccccatgtgttactg 451
|||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 94449507 aggaggactgtagaagtggttttgattgtccatgagcaccagct-ccccatgtgttactg 94449565
Query: 452 cttcagctgggaacaactttcttcaaattacccggtggtgagcttaacccaggagaagat 511
|| |||||||||||||||||| |||||||||| | | |||||||||||||||||||||||
Sbjct: 94449566 ctacagctgggaacaactttcctcaaattacctgatagtgagcttaacccaggagaagat 94449625
Query: 512 gaagttgaaggactaaaacgcttaatgacagagatactgggtcgtcaagatggagtcctg 571
||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 94449626 gaaattgaaggattaagacgcttaatgacagagatactgggctgtcaagatggagtcctg 94449685
Query: 572 caagactgggtcattgatgattgcattggtaactggtggagaccaaattttgaacctcct 631
||||||||||||| ||| ||||| |||||| ||||||||||||| |||||||| ||||
Sbjct: 94449686 caagactgggtcactgacgattgttttggtagatggtggagaccaacttttgaacatcct 94449745
Query: 632 cagtatccatatattcctgcacacattacaaaacctaaggaacataagaagttgtttttg 691
||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 94449746 tagttcccatatattcttgcacacattgcaaaacctaaggaacataagaagttgtttttg 94449805
Query: 692 gttcagcttcaagagaaagccttattcgcagtccctaaaaattacaagctggttgctgca 751
|||| |||||||||||||| |||||||||||||||||||||||| | |||||| ||||||
Sbjct: 94449806 gttctgcttcaagagaaagtcttattcgcagtccctaaaaattatacgctggtagctgca 94449865
Query: 752 ccactgtttgaactgtatgacaatgcacccggatatggacccatcatttctagtctccct 811
||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94449866 ccactatttgagctgcctgacaatgcacccggatatggacccatcatttctagtctccct 94449925
Query: 812 cagcttttgagcaggttcaattttatatacaactgaattcctgcacagcggagaagtaag 871
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94449926 cagcttttgagaaggttcaattttatatacaactgaattcctgcacagcggagaagtaag 94449985
Query: 872 agaagccatctctgtgagcacagctatacacagtgtagaataaacatgctagtaaggtg 930
||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 94449986 agaagccctctctgtgagcatagctatacacagtgtagaataaacatcgtagtaaggtg 94450044
>Sscrofa_Chr03
|| Length = 144787322
Score = 749 bits (378), Expect = 0.0
Identities = 568/628 (90%), Gaps = 10/628 (1%)
Strand = Plus / Plus
Query: 211 ggtcaaccagtatggcaacaagtacatccagcagaccaagcccctcaccctggagcgc-- 268
|||||| |||| ||||| || |||||| |||||||||| |||||||||| || | |
Sbjct: 38313617 ggtcaatcagtgtggcagcaggtacattcagcagaccagctccctcaccctagaacccct 38313676
Query: 269 -accatcaacctgtaccctcttaccaattatacttttggtacaaaagagcccctctatga 327
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 38313677 caccatcaacccataccctcctaccaattatacttttggtacaaaagagcccctctatga 38313736
Query: 328 gaaggacagctctgttgccgccagatttcagcgcatgagggaggaatttgataaaattgg 387
||||| ||||||||||||| ||||||||||| ||| ||||||||||||||| | | |||
Sbjct: 38313737 gaaggtcagctctgttgccaccagatttcagtacataagggaggaatttgattacactgg 38313796
Query: 388 catgaggaggactgtagaaggagttttgattgtccatgagcaccggctaccccatgtgtt 447
|||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||
Sbjct: 38313797 catgaggaggactgtagaagcggtgttgattgcccatgagcaccggctaccccatgcgtt 38313856
Query: 448 actgcttcagctgggaacaactttcttcaaattacccggtggtgagcttaacccaggaga 507
|||||| ||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 38313857 actgctacagctgg-aacaactttcttcaaataacctggtggtgagct-aacccaggaga 38313914
Query: 508 agatgaagttgaaggactaaaacgcttaatgacagagatactgggtcgtcaagatggagt 567
|||||||| || |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 38313915 agatgaag-----gggctaagacgcttaatgacagagatactgggtcgtcaagaaggagt 38313969
Query: 568 cctgcaagactgggtcattgatgattgcattggtaactggtggagaccaaattttgaacc 627
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 38313970 cctgcaagactgggtcactgatgattgcattggtaacgggtggagaccaaattctgaacc 38314029
Query: 628 tcctcagtatccatatattcctgcacacattacaaaacctaaggaacataagaagttgtt 687
||||| || |||||||||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct: 38314030 tcctcggtgtccatatattcctgcacacattacaaaacctaagcaacacaagacgttgtt 38314089
Query: 688 tttggttcagcttcaagagaaagccttattcgcagtccctaaaaattacaagctggttgc 747
|||||||||| ||||||||||||||||||| || |||||||||||||||||||| || ||
Sbjct: 38314090 tttggttcagtttcaagagaaagccttatttgctgtccctaaaaattacaagctagtagc 38314149
Query: 748 tgcaccactgtttgaactgtatgacaatgcacccggatatggacccatcatttctagtct 807
| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 38314150 tacaccactgtttgaactgtatgacaatgcacccagatatggacctatcatttctagtct 38314209
Query: 808 ccctcagcttttgagcaggttcaatttt 835
|||||||||||||||||| |||||||||
Sbjct: 38314210 ccctcagcttttgagcagtttcaatttt 38314237
Score = 121 bits (61), Expect = 9e-25
Identities = 99/109 (90%), Gaps = 2/109 (1%)
Strand = Plus / Plus
Query: 819 tgagcaggttcaattttatatacaa-ctgaattcctgcacagcggagaagtaagagaagc 877
|||||||| ||| ||||||| |||| |||||||||| |||||||||||||||||||| ||
Sbjct: 38314479 tgagcaggctcagttttataaacaaactgaattcctacacagcggagaagtaagagacgc 38314538
Query: 878 catctctgtgagcacagctatacacagtgtagaataaacatgctagtaa 926
||||| |||||||| |||||||| |||| ||||||||||||||||||||
Sbjct: 38314539 catctttgtgagca-agctatacgcagtatagaataaacatgctagtaa 38314586
>gb|JH118949.1| Sus scrofa unplaced genomic scaffold ChrUScaf3685
Length = 18714
Score = 728 bits (367), Expect = 0.0
Identities = 480/513 (93%), Gaps = 6/513 (1%)
Strand = Plus / Plus
Query: 110 aagtctccctgcctccctctttccgctcgctgctagtgccgggagctcgctagcatgtct 169
|||||||||||||||||||||||| ||||||||||||||| | |||| || ||||||||
Sbjct: 8402 aagtctccctgcctccctctttccactcgctgctagtgccag-agcttgccagcatgtcc 8460
Query: 170 gtggtgccgcccaatcgctcgcagaccggctggccccgg-ggggtcaaccagtatggcaa 228
|||||||||||||||| || |||||| ||||| ||| | ||||||||||||||||||||
Sbjct: 8461 gtggtgccgcccaatcagtcacagaccagctgggcccagaggggtcaaccagtatggcaa 8520
Query: 229 caagtacatccagcagaccaagcccctcaccctggagcgcaccatcaacctgtaccctct 288
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8521 caagtacatgcagcagaccaagcgcctcaccctggagcgcaccatcaacctgtaccctct 8580
Query: 289 taccaattatacttttggtacaaaagagcccctctatgagaaggacagctctgttgccgc 348
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 8581 taccaactatacttttggtacaaaagagcccctctat---aaggacagctctgttgccac 8637
Query: 349 cagatttcagcgcatgagggaggaatttgataaaattggcatgaggaggactgtagaagg 408
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8638 cagatttcagcacatgagggaggaatttgataaaattggcatgaggaggactgtagaagg 8697
Query: 409 agttttgattgtccatgagcaccggctaccccatgtgttactgcttcagctgggaacaac 468
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 8698 ggttttgattgtccatgagcaccagctaccccatgtgttactgctacagctggaaacaac 8757
Query: 469 tttcttcaaattacccggtggtgagcttaacccaggagaagatgaagt-tgaaggactaa 527
||||||||||||||| |||||||||||||| || ||||||||||||| |||||||| ||
Sbjct: 8758 tttcttcaaattacctggtggtgagcttaatacaagagaagatgaagtctgaaggacaaa 8817
Query: 528 aacgcttaatgacagagatactgggtcgtcaagatggagtcctgcaagactgggtcattg 587
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8818 aacacttaatgacagagatactgggttgtcaagatggagtcctgcaagactgggtcattg 8877
Query: 588 atgattgcattggtaactggtggagaccaaatt 620
|||||||||||||||||||||||||||||||||
Sbjct: 8878 atgattgcattggtaactggtggagaccaaatt 8910
Score = 391 bits (197), Expect = e-106
Identities = 239/253 (94%)
Strand = Plus / Plus
Query: 678 agaagttgtttttggttcagcttcaagagaaagccttattcgcagtccctaaaaattaca 737
|||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9012 agaaattgttttgggttcagcttcaagagaaagccttattcgcaatccctaaaaattaca 9071
Query: 738 agctggttgctgcaccactgtttgaactgtatgacaatgcacccggatatggacccatca 797
|||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct: 9072 agctagtagctgcaccactatttgaactgtatgacaatgcacccagatatggacccataa 9131
Query: 798 tttctagtctccctcagcttttgagcaggttcaattttatatacaactgaattcctgcac 857
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9132 tttctagactccctcagcttttgagcaggttcagttttatatacaactgaattcctgcac 9191
Query: 858 agcggagaagtaagagaagccatctctgtgagcacagctatacacagtgtagaataaaca 917
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 9192 agcagaaaagtaagagaagctatctctgtgagcacagctatacacagtgtagaataaaca 9251
Query: 918 tgctagtaaggtg 930
|||||| ||||||
Sbjct: 9252 tgctagcaaggtg 9264
>gb|GL893413.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2180
Length = 45090
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 280 gtaccctcttaccaattatacttttggtacaaaagagcccctctatgagaaggacagctc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37808 gtaccctcttaccaattatacttttggtacaaaagagcccctctatgagaaggacagctc 37867
Query: 340 tgttgccgccagatttcagcgcatgagggaggaatttgataaaattggcatgaggaggac 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37868 tgttgccgccagatttcagcgcatgagggaggaatttgataaaattggcatgaggaggac 37927
Query: 400 tgtagaaggagttttgattgtccatgagcaccggctaccccatgtgttactgcttcagct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37928 tgtagaaggagttttgattgtccatgagcaccggctaccccatgtgttactgcttcagct 37987
Query: 460 gggaacaactttcttcaaatt 480
|||||||||||||||||||||
Sbjct: 37988 gggaacaactttcttcaaatt 38008
Score = 325 bits (164), Expect = 3e-86
Identities = 170/172 (98%)
Strand = Plus / Plus
Query: 111 agtctccctgcctccctctttccgctcgctgctagtgccgggagctcgctagcatgtctg 170
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 33786 agtctccctgcctccctctttccgctcgctgctagtaccgggagctcgctagcatgtctg 33845
Query: 171 tggtgccgcccaatcgctcgcagaccggctggccccggggggtcaaccagtatggcaaca 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33846 tggtgccgcccaatcgctcgcagaccggctggccccggggggtcaaccagtatggcaaca 33905
Query: 231 agtacatccagcagaccaagcccctcaccctggagcgcaccatcaacctgta 282
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 33906 agtacatccagcagaccaagcccctctccctggagcgcaccatcaacctgta 33957
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 543 agatactgggtcgtcaagatggagtcctgcaagactgggtcattgatgattgcattggta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44094 agatactgggtcgtcaagatggagtcctgcaagactgggtcattgatgattgcattggta 44153
Query: 603 actggtggagaccaaattttgaacctcctcag 634
||||||||||||||||||||||||||||||||
Sbjct: 44154 actggtggagaccaaattttgaacctcctcag 44185
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 485 ggtggtgagcttaacccaggagaagatgaagttgaaggactaaaacgcttaatgacagag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38934 ggtggtgagcttaacccaggagaagatgaagttgaaggactaaaacgcttaatgacagag 38993
Score = 117 bits (59), Expect = 1e-23
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 1 gatgcttcgggttcacttccggcgtacgtacgcctcctcttgtgctcgcttgttaatggc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33623 gatgcttcgcgttcacttccggcgtacgtacgcctcctcttgtgctcgcttgttaatggc 33682
Query: 61 ggg 63
|||
Sbjct: 33683 ggg 33685
>Sscrofa_Chr16
|| Length = 86898991
Score = 331 bits (167), Expect = 5e-88
Identities = 207/219 (94%), Gaps = 1/219 (0%)
Strand = Plus / Plus
Query: 475 caaattacccggtggtgagcttaacccaggagaagatgaagttgaaggactaaaacgctt 534
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct: 59813827 caaattacctggtggtgagcttaacccaggagaagatgaagctgaaggactaaaatggtt 59813886
Query: 535 aatgacagagatactgggtcgtcaagatggagtcctgcaagactgggtcattgatgattg 594
|||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 59813887 aatgacagagataccgggtcatcaagatggagtcctgcaagactgggttattgatgattg 59813946
Query: 595 cattggtaactggtggagaccaaattttgaacctcctcagtatccatatattcctgcaca 654
|| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 59813947 cactggtatctggtggagaccaaactttgaacctcctcagtatccatatattcctgcaca 59814006
Query: 655 cattacaaaacctaaggaacataagaagttgtttttggt 693
|||||||||||||||||||| |||||| |||||||||||
Sbjct: 59814007 cattacaaaacctaaggaac-taagaaattgtttttggt 59814044
Score = 283 bits (143), Expect = 1e-73
Identities = 225/251 (89%), Gaps = 1/251 (0%)
Strand = Plus / Plus
Query: 680 aagttgtttttggttcagcttcaagagaaagccttattcgcagtccctaaaaattacaag 739
|||||| ||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct: 59814742 aagttgcttttggttcagcttctagagaaagccttatgtgcagttcctaaaaattacaag 59814801
Query: 740 ctggttgctgcaccactgtttgaactgtatgacaatgcacccggatatggacccatcatt 799
||| | |||||||| || ||||| |||||||||||||||| | | |||||||||||||
Sbjct: 59814802 ctgatagctgcacc-ctccttgaattgtatgacaatgcacctaggtgtggacccatcatt 59814860
Query: 800 tctagtctccctcagcttttgagcaggttcaattttatatacaactgaattcctgcacag 859
||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 59814861 tctagtccccctcagcttttgagcaggttcaattttgtatacaactgaattccggcacag 59814920
Query: 860 cggagaagtaagagaagccatctctgtgagcacagctatacacagtgtagaataaacatg 919
| || ||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 59814921 cagacaagtaagagaagctgtctctgtgagcagagtgatacacagtgtagaataaacatg 59814980
Query: 920 ctagtaaggtg 930
|||| ||||||
Sbjct: 59814981 ctaggaaggtg 59814991
>gb|GL896493.1| Sus scrofa unplaced genomic scaffold chrU_scaffold828
Length = 19913
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 745 tgctgcaccactgtttgaactgtatgacaatgcacccggatatggacccatcatttctag 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4895 tgctgcaccactgtttgaactgtatgacaatgcacccggatatggacccatcatttctag 4954
Query: 805 tctccctcagcttttgagcaggt 827
|||||||||||||||||||||||
Sbjct: 4955 tctccctcagcttttgagcaggt 4977
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 633 agtatccatatattcctgcacacattacaaaacctaaggaacataagaagttgtttttgg 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3763 agtatccatatattcctgcacacattacaaaacctaaggaacataagaagttgtttttgg 3822
Query: 693 ttcagcttcaagagaaag 710
||||||||||||||||||
Sbjct: 3823 ttcagcttcaagagaaag 3840
>gb|JH118587.1| Sus scrofa unplaced genomic scaffold ChrUScaf1163
Length = 190817
Score = 141 bits (71), Expect = 1e-30
Identities = 135/155 (87%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 605 tggtggagaccaaattttgaacctcctcagtatccatatattcctgcacacattacaaaa 664
||||||||||||||| |||||||||| ||||| |||| ||||||||||| |||||||||
Sbjct: 78803 tggtggagaccaaatcttgaacctccccagtagtcataaattcctgcacatattacaaaa 78862
Query: 665 cctaaggaacataagaagttg-tttttggttcagcttcaagagaaagccttattcgcagt 723
|| |||||| |||||| || |||| |||||| |||||||||| ||||| || |||||
Sbjct: 78863 ccgaaggaatggaagaagctgcttttcggttcaccttcaagagatagcctcgtttgcagt 78922
Query: 724 ccctaaaaattacaagctggttgctgcaccactgt 758
||||||||||||||||||||| ||||| |||||||
Sbjct: 78923 ccctaaaaattacaagctggtcgctgcgccactgt 78957
>Sscrofa_Chr13
|| Length = 218635234
Score = 101 bits (51), Expect = 8e-19
Identities = 92/103 (89%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 758 tttgaactgtatgacaatgcacccggatatggacccatcattt-ctagtctccctcagct 816
|||||||||||||||| ||| ||| |||||||||||| |||| ||||||| ||||||||
Sbjct: 81259616 tttgaactgtatgacagtgctcccatatatggacccattattttctagtctgcctcagct 81259675
Query: 817 ttt-gagcaggttcaattttatatacaactgaattcctgcaca 858
||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 81259676 ttttgagcaggttcagttgtatatacaacttaattcctgcaca 81259718
>Sscrofa_Chr09
|| Length = 153670197
Score = 89.7 bits (45), Expect = 3e-15
Identities = 132/157 (84%), Gaps = 3/157 (1%)
Strand = Plus / Plus
Query: 605 tggtggagaccaaattttgaacctcctc-agtatccatatattcctgcacacattacaaa 663
||||||||||||||| |||||||||| | |||| |||| ||||||||||| |||||||
Sbjct: 152954984 tggtggagaccaaatcttgaacctccaccagtagtcataaattcctgcacattttacaaa 152955043
Query: 664 acctaaggaacataagaagttgtttttggttcagcttcaaga-gaaagcctta-ttcgca 721
|| |||||| |||||| || ||| |||||| |||||||| || ||||| | || |||
Sbjct: 152955044 tccgaaggaagggaagaagctgctttcggttcaccttcaagaagatagcctcagtttgca 152955103
Query: 722 gtccctaaaaattacaagctggttgctgcaccactgt 758
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Sbjct: 152955104 gtccctaaaaattacaagctggtccctgcgccactgt 152955140
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,627,658
Number of extensions: 360
Number of successful extensions: 360
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 20
Length of query: 1157
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1136
Effective length of database: 2,808,413,156
Effective search space: 3190357345216
Effective search space used: 3190357345216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)