Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003520
(1192 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030250.1| 28S ribosomal protein S11, mitochondrial pre... 289 4e-78
>ref|NP_001030250.1| 28S ribosomal protein S11, mitochondrial precursor [Bos taurus].
Length = 197
Score = 289 bits (739), Expect = 4e-78
Identities = 148/197 (75%), Positives = 157/197 (79%), Gaps = 1/197 (0%)
Frame = +1
Query: 319 MQVVRNAGSRLLQSWAWPPKTRIVAGLPASTIHRSAPHLQDAAAKLDIEDKEE-ARTPSH 495
MQV+RN+GS LL+SWAWPP TR+VAG+PA TIH SA +QDAAAK ++E E A PS
Sbjct: 1 MQVLRNSGSWLLRSWAWPPTTRVVAGVPAPTIHMSAQQMQDAAAKEEVEKAETPAPAPSR 60
Query: 496 SSFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGF 675
SSFSIYPPIPGQE+SLRWAGKKFEEIPIAHIKASYNNTQI VVSAAHQPLA ASCGTEGF
Sbjct: 61 SSFSIYPPIPGQESSLRWAGKKFEEIPIAHIKASYNNTQIHVVSAAHQPLARASCGTEGF 120
Query: 676 RNXXXXXXXXXXXXXXXXXXXXXXXXVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITD 855
RN VTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITD
Sbjct: 121 RNAKKGTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITD 180
Query: 856 NTPIPHNGCRPRKARRL 906
NTPIPHNGCRPRKARRL
Sbjct: 181 NTPIPHNGCRPRKARRL 197
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,187,522
Number of extensions: 1394816
Number of successful extensions: 5021
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4999
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 293
Effective length of database: 14,240,222
Effective search space: 4172385046
Effective search space used: 4172385046
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003520
(1192 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545845.2| PREDICTED: similar to mitochondrial ribosomal p... 272 5e-73
>ref|XP_545845.2| PREDICTED: similar to mitochondrial ribosomal protein S11 isoform a
[Canis familiaris].
Length = 196
Score = 272 bits (695), Expect = 5e-73
Identities = 138/196 (70%), Positives = 148/196 (75%)
Frame = +1
Query: 319 MQVVRNAGSRLLQSWAWPPKTRIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSHS 498
MQVVR S LL+ WAW P R+VAG PAST+H A LQ+ AAK + +K EA TPS S
Sbjct: 1 MQVVRTTRSWLLRWWAWSPTPRVVAGAPASTVHAGARQLQNQAAKQEAGEKAEASTPSRS 60
Query: 499 SFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFR 678
FSIYPP+PGQE+ LRWAGKKFEEIPIAHIKASYNNTQIQVVSAA+QPLA SCGTEGFR
Sbjct: 61 GFSIYPPVPGQESPLRWAGKKFEEIPIAHIKASYNNTQIQVVSAANQPLARTSCGTEGFR 120
Query: 679 NXXXXXXXXXXXXXXXXXXXXXXXXVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDN 858
N VTH+RVVVKGLGPGRLSAIKGLTMGGLEVISITDN
Sbjct: 121 NAKKGTGIAAQTAGIAAAVKATGKGVTHIRVVVKGLGPGRLSAIKGLTMGGLEVISITDN 180
Query: 859 TPIPHNGCRPRKARRL 906
TPIPHNGCRPRKARRL
Sbjct: 181 TPIPHNGCRPRKARRL 196
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,269,648
Number of extensions: 1432017
Number of successful extensions: 4869
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4858
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 292
Effective length of database: 15,374,224
Effective search space: 4489273408
Effective search space used: 4489273408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003520
(1192 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_073750.2| 28S ribosomal protein S11, mitochondrial isofor... 252 5e-67
Alignment gi|NP_789775.1| 28S ribosomal protein S11, mitochondrial isofor... 170 2e-42
>ref|NP_073750.2| 28S ribosomal protein S11, mitochondrial isoform a [Homo sapiens].
Length = 194
Score = 252 bits (643), Expect = 5e-67
Identities = 131/197 (66%), Positives = 144/197 (73%), Gaps = 1/197 (0%)
Frame = +1
Query: 319 MQVVRNAGSRLLQSWAWPPKT-RIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSH 495
MQ VRNAGSR L+SW WP R+VA PA TI A LQDAAAK +E PSH
Sbjct: 1 MQAVRNAGSRFLRSWTWPQTAGRVVARTPAGTICTGARQLQDAAAKQKVEQNA---APSH 57
Query: 496 SSFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGF 675
+ FSIYPPIPG+E+SLRWAGKKFEEIPIAHIKAS+NNTQIQVVSA+++PLA ASCGTEGF
Sbjct: 58 TKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGF 117
Query: 676 RNXXXXXXXXXXXXXXXXXXXXXXXXVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITD 855
RN V H+RVVVKGLGPGRLSA+ GL MGGLEVISITD
Sbjct: 118 RNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITD 177
Query: 856 NTPIPHNGCRPRKARRL 906
NTPIPHNGCRPRKAR+L
Sbjct: 178 NTPIPHNGCRPRKARKL 194
>ref|NP_789775.1| 28S ribosomal protein S11, mitochondrial isoform b [Homo sapiens].
Length = 161
Score = 170 bits (431), Expect = 2e-42
Identities = 101/197 (51%), Positives = 111/197 (56%), Gaps = 1/197 (0%)
Frame = +1
Query: 319 MQVVRNAGSRLLQSWAWPPKT-RIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSH 495
MQ VRNAGSR L+SW WP R+VA PA TI A LQDAAAK +E PSH
Sbjct: 1 MQAVRNAGSRFLRSWTWPQTAGRVVARTPAGTICTGARQLQDAAAKQKVEQNA---APSH 57
Query: 496 SSFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGF 675
+ FS TQIQVVSA+++PLA ASCGTEGF
Sbjct: 58 TKFS---------------------------------TQIQVVSASNEPLAFASCGTEGF 84
Query: 676 RNXXXXXXXXXXXXXXXXXXXXXXXXVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITD 855
RN V H+RVVVKGLGPGRLSA+ GL MGGLEVISITD
Sbjct: 85 RNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLEVISITD 144
Query: 856 NTPIPHNGCRPRKARRL 906
NTPIPHNGCRPRKAR+L
Sbjct: 145 NTPIPHNGCRPRKARKL 161
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,281,420
Number of extensions: 1401416
Number of successful extensions: 5060
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5038
Number of HSP's successfully gapped: 3
Length of query: 397
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 292
Effective length of database: 14,835,944
Effective search space: 4332095648
Effective search space used: 4332095648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003520
(1192 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080774.2| 28S ribosomal protein S11, mitochondrial precur... 238 9e-63
>ref|NP_080774.2| 28S ribosomal protein S11, mitochondrial precursor [Mus musculus].
Length = 191
Score = 238 bits (606), Expect = 9e-63
Identities = 122/196 (62%), Positives = 141/196 (71%)
Frame = +1
Query: 319 MQVVRNAGSRLLQSWAWPPKTRIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSHS 498
MQV+RN+GS LL+SWA TR V PA IH AP L+D+AA+ + E R + S
Sbjct: 1 MQVLRNSGSWLLRSWAGHGMTRFVGIAPAKNIHTGAPRLEDSAARQNTE-----REAAPS 55
Query: 499 SFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFR 678
FS+YPP+PGQE+SL+WAG KFE++PIAHIKA+YNNTQIQVVSA + LA ASCGTEGFR
Sbjct: 56 RFSLYPPVPGQESSLQWAGMKFEDVPIAHIKATYNNTQIQVVSATNASLARASCGTEGFR 115
Query: 679 NXXXXXXXXXXXXXXXXXXXXXXXXVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDN 858
N VTH+RVVVKG+GPGR SAIKGLTMGGLEVISITDN
Sbjct: 116 NAKKGTGIAAQTAGIAAAAKATGKGVTHIRVVVKGMGPGRWSAIKGLTMGGLEVISITDN 175
Query: 859 TPIPHNGCRPRKARRL 906
TP+PHNGCRPRKARRL
Sbjct: 176 TPVPHNGCRPRKARRL 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,552,244
Number of extensions: 1167677
Number of successful extensions: 4073
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4057
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 294
Effective length of database: 12,523,851
Effective search space: 3682012194
Effective search space used: 3682012194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003520
(1192 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121907.1| PREDICTED: 28S ribosomal protein S11, mitoch... 342 2e-94
Alignment gi|XP_003353546.1| PREDICTED: 28S ribosomal protein S11, mitoch... 255 3e-68
>ref|XP_003121907.1| PREDICTED: 28S ribosomal protein S11, mitochondrial isoform 1 [Sus
scrofa].
Length = 196
Score = 342 bits (877), Expect = 2e-94
Identities = 172/196 (87%), Positives = 172/196 (87%)
Frame = +1
Query: 319 MQVVRNAGSRLLQSWAWPPKTRIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSHS 498
MQVVRNAGSRLLQSWAWPPKTRIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSHS
Sbjct: 1 MQVVRNAGSRLLQSWAWPPKTRIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSHS 60
Query: 499 SFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFR 678
SFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFR
Sbjct: 61 SFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFR 120
Query: 679 NXXXXXXXXXXXXXXXXXXXXXXXXVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDN 858
N VTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDN
Sbjct: 121 NAKKGTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDN 180
Query: 859 TPIPHNGCRPRKARRL 906
TPIPHNGCRPRKARRL
Sbjct: 181 TPIPHNGCRPRKARRL 196
>ref|XP_003353546.1| PREDICTED: 28S ribosomal protein S11, mitochondrial isoform 2 [Sus
scrofa].
Length = 163
Score = 255 bits (652), Expect = 3e-68
Identities = 139/196 (70%), Positives = 139/196 (70%)
Frame = +1
Query: 319 MQVVRNAGSRLLQSWAWPPKTRIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSHS 498
MQVVRNAGSRLLQSWAWPPKTRIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSHS
Sbjct: 1 MQVVRNAGSRLLQSWAWPPKTRIVAGLPASTIHRSAPHLQDAAAKLDIEDKEEARTPSHS 60
Query: 499 SFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFR 678
SFS TQIQVVSAAHQPLAHASCGTEGFR
Sbjct: 61 SFS---------------------------------TQIQVVSAAHQPLAHASCGTEGFR 87
Query: 679 NXXXXXXXXXXXXXXXXXXXXXXXXVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDN 858
N VTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDN
Sbjct: 88 NAKKGTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDN 147
Query: 859 TPIPHNGCRPRKARRL 906
TPIPHNGCRPRKARRL
Sbjct: 148 TPIPHNGCRPRKARRL 163
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,130,286
Number of extensions: 899446
Number of successful extensions: 3173
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3167
Number of HSP's successfully gapped: 3
Length of query: 397
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,829,335
Effective search space: 2613483160
Effective search space used: 2613483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003520
(1192 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 761 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 761 bits (384), Expect = 0.0
Identities = 384/384 (100%)
Strand = Plus / Minus
Query: 1 ggcatcgcgggagcgacaggacgggcagaggtcggtcccgaacctactagaacgaaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212754909 ggcatcgcgggagcgacaggacgggcagaggtcggtcccgaacctactagaacgaaccat 212754850
Query: 61 tccaatatgaaggggtgggcaaagaactcttgttagaaaattaggaaaaggaggagtgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212754849 tccaatatgaaggggtgggcaaagaactcttgttagaaaattaggaaaaggaggagtgct 212754790
Query: 121 tcccagttggctcttgcaacgatagttactatagagcatttaaatgagaatagaaatctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212754789 tcccagttggctcttgcaacgatagttactatagagcatttaaatgagaatagaaatctt 212754730
Query: 181 taatattcctcaagaggagaggtcaggtaacttttcctctgcaccttcccccacaagcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212754729 taatattcctcaagaggagaggtcaggtaacttttcctctgcaccttcccccacaagcgt 212754670
Query: 241 ccgtggtgctgccgccgctccggcgccaccgtggtgctggtcgccgtggacggaagctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212754669 ccgtggtgctgccgccgctccggcgccaccgtggtgctggtcgccgtggacggaagctga 212754610
Query: 301 cggggatcaactcaagtcatgcaggttgtaagaaacgcgggttctcggctcttgcagtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212754609 cggggatcaactcaagtcatgcaggttgtaagaaacgcgggttctcggctcttgcagtca 212754550
Query: 361 tgggcatggccaccgaagaccagg 384
||||||||||||||||||||||||
Sbjct: 212754549 tgggcatggccaccgaagaccagg 212754526
Score = 696 bits (351), Expect = 0.0
Identities = 372/378 (98%), Gaps = 1/378 (0%)
Strand = Plus / Minus
Query: 801 gtctgccatcaagggcctgaccatggggggcctggaagtgatctcaatcacagacaacac 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212743898 gtctgccatcaagggcctgaccatggggggcctggaagtgatctcaatcacagacaacac 212743839
Query: 861 ccccatcccacacaacggatgccgccccaggaaggctcggaggctatgattcaggaagcc 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212743838 ccccatcccacacaacggatgccgccccaggaaggctcggaggctatgattcaggaagcc 212743779
Query: 921 tgcactgaacctgacctccagtccccctccagctggacttcgtagaaagcatgctgtcag 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212743778 tgcactgaacctgacctccagtccccctccagctggacttcgtagaaagcatgctgtcag 212743719
Query: 981 agctctccagggagggcttgtcagagacccttcaggcagtagggggagctctacctcctt 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212743718 agctctccagggagggcttgtcagagacccttcaggcagtagggggagctctacctcctt 212743659
Query: 1041 ccaggtggcctttgcttgctccttccactggagagccacgtgcccagaagtgaggccaca 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212743658 ccaggtggcctttgcttgctccttccactggagagccacgtgcccagaagtgaggccaca 212743599
Query: 1101 accttcttggacatgaaggggctgcaagggncaatactgctccctctgcttaaagaaaat 1160
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct: 212743598 cccttcttggacatgaaggggctgcaagggccataactgctccctctgcttagagaaaat 212743539
Query: 1161 -aaaatctctaccgtctg 1177
|||||||||||||||||
Sbjct: 212743538 aaaaatctctaccgtctg 212743521
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 606 cacacagatccaggtggtctctgctgctcaccagccccttgcgcacgcttcctgtggcac 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212746291 cacacagatccaggtggtctctgctgctcaccagccccttgcgcacgcttcctgtggcac 212746232
Query: 666 agagggctttcggaatgccaagaagggcacgggcattgcagcacaaacggctggcatagc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212746231 agagggctttcggaatgccaagaagggcacgggcattgcagcacaaacggctggcatagc 212746172
Query: 726 tgctgcagcg 735
||||||||||
Sbjct: 212746171 tgctgcagcg 212746162
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 381 caggatcgtggctggactgccggcctccaccatccacaggagcgcccctcatttgcaaga 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212754402 caggatcgtggctggactgccggcctccaccatccacaggagcgcccctcatttgcaaga 212754343
Query: 441 cgcggcggccaagctggacattgaggacaaggaggaggctcggactccgagccacagcag 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212754342 cgcggcggccaagctggacattgaggacaaggaggaggctcggactccgagccacagcag 212754283
Query: 501 cttcag 506
||||||
Sbjct: 212754282 cttcag 212754277
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 504 cagcatttaccctccaattccaggacaagagaactctctgaggtgggcaggaaagaaatt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212749403 cagcatttaccctccaattccaggacaagagaactctctgaggtgggcaggaaagaaatt 212749344
Query: 564 tgaggagatccccatcgcacacattaaagcatcctacaacaa 605
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212749343 tgaggagatccccatcgcacacattaaagcatcctacaacaa 212749302
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 735 gaaagctacagggaaaggtgtgacccacgtccgagttgtggtgaaaggcctggggccagg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212744678 gaaagctacagggaaaggtgtgacccacgtccgagttgtggtgaaaggcctggggccagg 212744619
Query: 795 gcgcttg 801
|||||||
Sbjct: 212744618 gcgcttg 212744612
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,652,880
Number of extensions: 258
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 6
Length of query: 1192
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1171
Effective length of database: 2,808,413,156
Effective search space: 3288651805676
Effective search space used: 3288651805676
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)