Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003527
(1595 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_872593.1| glutamate dehydrogenase 1, mitochondrial precur... 845 0.0
>ref|NP_872593.1| glutamate dehydrogenase 1, mitochondrial precursor [Bos taurus].
Length = 558
Score = 845 bits (2184), Expect(2) = 0.0
Identities = 417/443 (94%), Positives = 420/443 (94%)
Frame = +2
Query: 131 MYRCLGEALLLXXXXXXXXXXXXXDSAALLGRTRGQPATAPQPGLAPPARRHYSEAAADR 310
MYR LGEALLL DSAALLG RGQPA APQPGL PPARRHYSEAAADR
Sbjct: 1 MYRYLGEALLLSRAGPAALGSASADSAALLGWARGQPAAAPQPGLVPPARRHYSEAAADR 60
Query: 311 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSF 490
EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE+EEQKRNRVR ILRIIKPCNHVLSLSF
Sbjct: 61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSF 120
Query: 491 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 670
PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG
Sbjct: 121 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 180
Query: 671 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY 850
GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPG+DVPAPDMSTGEREMSWIADTY
Sbjct: 181 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTY 240
Query: 851 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG 1030
ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG
Sbjct: 241 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG 300
Query: 1031 DKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGTILG 1210
DKTFVVQGFGNVGLHSMRYLHRFGAKC+ VGESDGSIWNPDGIDPKELEDFKLQHGTILG
Sbjct: 301 DKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGTILG 360
Query: 1211 FPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 1390
FPKAKIYEGSILE DCDILIPAASEKQL KSNAPRVKAKIIAEGANGPTTPEADKIFLER
Sbjct: 361 FPKAKIYEGSILEVDCDILIPAASEKQLPKSNAPRVKAKIIAEGANGPTTPEADKIFLER 420
Query: 1391 NIMVIPDLYLNAGRVTVSYFEWL 1459
NIMVIPDLYLNAG VTVSYFEWL
Sbjct: 421 NIMVIPDLYLNAGGVTVSYFEWL 443
Score = 51.2 bits (121), Expect(2) = 0.0
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1
Query: 1462 DLNLVTYGRFDFKYERESTYPLLMFV*ENLEKKFEKPGEPFPL 1590
+LN V+YGR FKYER+S Y LLM V E+LE+KF K G P+
Sbjct: 445 NLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPI 487
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,760,652
Number of extensions: 1575300
Number of successful extensions: 5828
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5816
Number of HSP's successfully gapped: 2
Length of query: 531
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 424
Effective length of database: 14,140,958
Effective search space: 5995766192
Effective search space used: 5995766192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003527
(1595 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540979.2| PREDICTED: similar to Glutamate dehydrogenase 1... 744 0.0
Alignment gi|XP_852726.1| PREDICTED: similar to Glutamate dehydrogenase 1... 154 7e-58
Alignment gi|XP_854237.1| PREDICTED: similar to Glutamate dehydrogenase 1... 180 3e-53
>ref|XP_540979.2| PREDICTED: similar to Glutamate dehydrogenase 1, mitochondrial
precursor (GDH) [Canis familiaris].
Length = 479
Score = 744 bits (1921), Expect(2) = 0.0
Identities = 363/375 (96%), Positives = 369/375 (98%)
Frame = +2
Query: 338 VEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSW 517
VEGFFDRGASI EDKLVEDL+TRE+EEQ+RNRVRGILRIIKPCNHVLSLSFPIRRDDGSW
Sbjct: 50 VEGFFDRGASIAEDKLVEDLRTRETEEQRRNRVRGILRIIKPCNHVLSLSFPIRRDDGSW 109
Query: 518 EVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN 697
EVIEGYRAQHSQHRTPCKGGIRYST VSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN
Sbjct: 110 EVIEGYRAQHSQHRTPCKGGIRYSTGVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKIN 169
Query: 698 PKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDI 877
P+NYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDI
Sbjct: 170 PQNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDI 229
Query: 878 NAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF 1057
NAHACVTGKPIS GGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF
Sbjct: 230 NAHACVTGKPISHGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF 289
Query: 1058 GNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG 1237
GNVGLHSMRYLHRFGAKCVGVGESDG IWNPDGIDPKELEDFKLQHG++LGFPKAK YEG
Sbjct: 290 GNVGLHSMRYLHRFGAKCVGVGESDGGIWNPDGIDPKELEDFKLQHGSLLGFPKAKPYEG 349
Query: 1238 SILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLY 1417
SILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLY
Sbjct: 350 SILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLY 409
Query: 1418 LNAGRVTVSYFEWLK 1462
LNAG VTVSYFEWLK
Sbjct: 410 LNAGGVTVSYFEWLK 424
Score = 51.2 bits (121), Expect(2) = 0.0
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +1
Query: 1459 EDLNLVTYGRFDFKYERESTYPLLMFV*ENLEKKFEKPGEPFPL 1590
++LN V+YGR FKYER+S Y LLM V E+LE+KF K G P+
Sbjct: 424 KNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPV 467
>ref|XP_852726.1| PREDICTED: similar to Glutamate dehydrogenase 1, mitochondrial
precursor (GDH) [Canis familiaris].
Length = 336
Score = 154 bits (388), Expect(3) = 7e-58
Identities = 76/83 (91%), Positives = 77/83 (92%)
Frame = +2
Query: 1214 PKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERN 1393
P+ YEGSILEADCDILIPAASEKQLTKSN PRVKAKIIAEGANGPTTPEADKIFLERN
Sbjct: 168 PRQSPYEGSILEADCDILIPAASEKQLTKSNTPRVKAKIIAEGANGPTTPEADKIFLERN 227
Query: 1394 IMVIPDLYLNAGRVTVSYFEWLK 1462
IMVIPD YLNAG VTVSYFEWLK
Sbjct: 228 IMVIPDFYLNAGGVTVSYFEWLK 250
Score = 61.2 bits (147), Expect(3) = 7e-58
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +3
Query: 1131 MEAYGIQMVLIQRNWKTSNCNMEQSWASLKQRSMKGA 1241
M AYGIQMVL QRNWKTSNCNM+QSWAS +Q +G+
Sbjct: 140 MGAYGIQMVLTQRNWKTSNCNMDQSWASPRQSPYEGS 176
Score = 50.1 bits (118), Expect(3) = 7e-58
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +1
Query: 1459 EDLNLVTYGRFDFKYERESTYPLLMFV*ENLEKKFEKPGEPFPL 1590
++LN V+YGR FKYER+S Y LLM V E+LE+KF + G P+
Sbjct: 250 KNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGRHGGTIPV 293
Score = 130 bits (326), Expect = 5e-30
Identities = 73/108 (67%), Positives = 75/108 (69%)
Frame = +2
Query: 575 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTME 754
GIRY TDVSVD+ LASLMTYKCAVVDV FGGAKAGVKINP+NYTDNELEKITR
Sbjct: 41 GIRYGTDVSVDQT--LASLMTYKCAVVDVLFGGAKAGVKINPQNYTDNELEKITR----- 93
Query: 755 LAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVT 898
STGEREMSWIADTYASTI YDIN CVT
Sbjct: 94 ------------------STGEREMSWIADTYASTIVDYDINVLTCVT 123
>ref|XP_854237.1| PREDICTED: similar to Glutamate dehydrogenase 1, mitochondrial
precursor (GDH) (Memory related protein-2) (MRG-2) [Canis
familiaris].
Length = 214
Score = 180 bits (456), Expect(2) = 3e-53
Identities = 95/128 (74%), Positives = 96/128 (75%)
Frame = +2
Query: 1079 MRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEADC 1258
MRYLHRFGAKCVGV E DGSIWNPDGIDPKELEDFKLQHG+ILGFPKAK YEGSILEADC
Sbjct: 1 MRYLHRFGAKCVGVDEFDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYEGSILEADC 60
Query: 1259 DILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGRVT 1438
DILIPAASEKQLTKSNAPRVKAKIIAE AG VT
Sbjct: 61 DILIPAASEKQLTKSNAPRVKAKIIAE----------------------------AGGVT 92
Query: 1439 VSYFEWLK 1462
VSYFEWLK
Sbjct: 93 VSYFEWLK 100
Score = 48.9 bits (115), Expect(2) = 3e-53
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +1
Query: 1459 EDLNLVTYGRFDFKYERESTYPLLMFV*ENLEKKFEKPGEPFPL 1590
++LN V+YGR FKYER+S Y LL+ V E+LE+KF K G P+
Sbjct: 100 KNLNHVSYGRLIFKYERDSNYHLLVSVQESLERKFGKHGGTIPV 143
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,120,672
Number of extensions: 1598573
Number of successful extensions: 5834
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5811
Number of HSP's successfully gapped: 8
Length of query: 531
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 423
Effective length of database: 15,274,216
Effective search space: 6460993368
Effective search space used: 6460993368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003527
(1595 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005262.1| glutamate dehydrogenase 1, mitochondrial precur... 843 0.0
Alignment gi|NP_036216.2| glutamate dehydrogenase 2, mitochondrial precur... 818 0.0
>ref|NP_005262.1| glutamate dehydrogenase 1, mitochondrial precursor [Homo sapiens].
Length = 558
Score = 843 bits (2177), Expect(2) = 0.0
Identities = 418/444 (94%), Positives = 421/444 (94%)
Frame = +2
Query: 131 MYRCLGEALLLXXXXXXXXXXXXXDSAALLGRTRGQPATAPQPGLAPPARRHYSEAAADR 310
MYR LGEALLL DSAALLG RGQPA APQPGLA ARRHYSEA ADR
Sbjct: 1 MYRYLGEALLLSRAGPAALGSASADSAALLGWARGQPAAAPQPGLALAARRHYSEAVADR 60
Query: 311 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSF 490
EDDPNFFKMVEGFFDRGASIVEDKLVEDL+TRESEEQKRNRVRGILRIIKPCNHVLSLSF
Sbjct: 61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSF 120
Query: 491 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 670
PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG
Sbjct: 121 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 180
Query: 671 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY 850
GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY
Sbjct: 181 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY 240
Query: 851 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG 1030
ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG
Sbjct: 241 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG 300
Query: 1031 DKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGTILG 1210
DKTFVVQGFGNVGLHSMRYLHRFGAKC+ VGESDGSIWNPDGIDPKELEDFKLQHG+ILG
Sbjct: 301 DKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILG 360
Query: 1211 FPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 1390
FPKAK YEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER
Sbjct: 361 FPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 420
Query: 1391 NIMVIPDLYLNAGRVTVSYFEWLK 1462
NIMVIPDLYLNAG VTVSYFEWLK
Sbjct: 421 NIMVIPDLYLNAGGVTVSYFEWLK 444
Score = 51.6 bits (122), Expect(2) = 0.0
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +1
Query: 1459 EDLNLVTYGRFDFKYERESTYPLLMFV*ENLEKKFEKPGEPFPL 1590
++LN V+YGR FKYER+S Y LLM V E+LE+KF K G P+
Sbjct: 444 KNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPI 487
>ref|NP_036216.2| glutamate dehydrogenase 2, mitochondrial precursor [Homo sapiens].
Length = 558
Score = 818 bits (2112), Expect(2) = 0.0
Identities = 404/444 (90%), Positives = 415/444 (93%)
Frame = +2
Query: 131 MYRCLGEALLLXXXXXXXXXXXXXDSAALLGRTRGQPATAPQPGLAPPARRHYSEAAADR 310
MYR L +ALL SAALLGR RGQPA A QPGLA ARRHYSE ADR
Sbjct: 1 MYRYLAKALLPSRAGPAALGSAANHSAALLGRGRGQPAAASQPGLALAARRHYSELVADR 60
Query: 311 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSF 490
EDDPNFFKMVEGFFDRGASIVEDKLV+DL+T+ESEEQKRNRVRGILRIIKPCNHVLSLSF
Sbjct: 61 EDDPNFFKMVEGFFDRGASIVEDKLVKDLRTQESEEQKRNRVRGILRIIKPCNHVLSLSF 120
Query: 491 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 670
PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG
Sbjct: 121 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 180
Query: 671 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY 850
GAKAGVKINPKNYT+NELEKITRRFTMELAKKGFIGPG+DVPAPDM+TGEREMSWIADTY
Sbjct: 181 GAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSWIADTY 240
Query: 851 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG 1030
ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGF
Sbjct: 241 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFR 300
Query: 1031 DKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGTILG 1210
DKTFVVQGFGNVGLHSMRYLHRFGAKC+ VGESDGSIWNPDGIDPKELEDFKLQHG+ILG
Sbjct: 301 DKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILG 360
Query: 1211 FPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 1390
FPKAK YEGSILE DCDILIPAA+EKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER
Sbjct: 361 FPKAKPYEGSILEVDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 420
Query: 1391 NIMVIPDLYLNAGRVTVSYFEWLK 1462
NI+VIPDLYLNAG VTVSYFEWLK
Sbjct: 421 NILVIPDLYLNAGGVTVSYFEWLK 444
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +1
Query: 1459 EDLNLVTYGRFDFKYERESTYPLLMFV*ENLEKKFEKPGEPFPL 1590
++LN V+YGR FKYER+S Y LL+ V E+LE+KF K G P+
Sbjct: 444 KNLNHVSYGRLTFKYERDSNYHLLLSVQESLERKFGKHGGTIPI 487
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,135,375
Number of extensions: 1579124
Number of successful extensions: 5819
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5805
Number of HSP's successfully gapped: 4
Length of query: 531
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 424
Effective length of database: 14,770,016
Effective search space: 6262486784
Effective search space used: 6262486784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003527
(1595 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032159.1| glutamate dehydrogenase 1, mitochondrial precur... 851 0.0
>ref|NP_032159.1| glutamate dehydrogenase 1, mitochondrial precursor [Mus musculus].
Length = 558
Score = 851 bits (2198), Expect(2) = 0.0
Identities = 421/444 (94%), Positives = 424/444 (95%)
Frame = +2
Query: 131 MYRCLGEALLLXXXXXXXXXXXXXDSAALLGRTRGQPATAPQPGLAPPARRHYSEAAADR 310
MYR LGEALLL DSAALLG RGQP+ APQPGL P ARRHYSEAAADR
Sbjct: 1 MYRRLGEALLLSRAGPAALGSAAADSAALLGWARGQPSAAPQPGLTPVARRHYSEAAADR 60
Query: 311 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSF 490
EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSF
Sbjct: 61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSF 120
Query: 491 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 670
PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG
Sbjct: 121 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 180
Query: 671 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY 850
GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY
Sbjct: 181 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY 240
Query: 851 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG 1030
ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG
Sbjct: 241 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG 300
Query: 1031 DKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGTILG 1210
DKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHG+ILG
Sbjct: 301 DKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGSILG 360
Query: 1211 FPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 1390
FPKAK+YEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER
Sbjct: 361 FPKAKVYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 420
Query: 1391 NIMVIPDLYLNAGRVTVSYFEWLK 1462
NIMVIPDLYLNAG VTVSYFEWLK
Sbjct: 421 NIMVIPDLYLNAGGVTVSYFEWLK 444
Score = 51.2 bits (121), Expect(2) = 0.0
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +1
Query: 1459 EDLNLVTYGRFDFKYERESTYPLLMFV*ENLEKKFEKPGEPFPL 1590
++LN V+YGR FKYER+S Y LLM V E+LE+KF K G P+
Sbjct: 444 KNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPV 487
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,406,058
Number of extensions: 1320821
Number of successful extensions: 4659
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4649
Number of HSP's successfully gapped: 2
Length of query: 531
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 425
Effective length of database: 12,433,743
Effective search space: 5284340775
Effective search space used: 5284340775
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003527
(1595 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925088.2| PREDICTED: glutamate dehydrogenase 1, mitoch... 870 0.0
>ref|XP_001925088.2| PREDICTED: glutamate dehydrogenase 1, mitochondrial [Sus scrofa].
Length = 558
Score = 870 bits (2249), Expect(2) = 0.0
Identities = 430/444 (96%), Positives = 430/444 (96%)
Frame = +2
Query: 131 MYRCLGEALLLXXXXXXXXXXXXXDSAALLGRTRGQPATAPQPGLAPPARRHYSEAAADR 310
MYRCLGEALLL DSAALLGRTRGQPATAPQPGLAPPARRHYSEAAADR
Sbjct: 1 MYRCLGEALLLSRAGPAALGSAAADSAALLGRTRGQPATAPQPGLAPPARRHYSEAAADR 60
Query: 311 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSF 490
EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSF
Sbjct: 61 EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRESEEQKRNRVRGILRIIKPCNHVLSLSF 120
Query: 491 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 670
PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG
Sbjct: 121 PIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFG 180
Query: 671 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY 850
GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY
Sbjct: 181 GAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY 240
Query: 851 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG 1030
ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG
Sbjct: 241 ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFG 300
Query: 1031 DKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGTILG 1210
DKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGTILG
Sbjct: 301 DKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDGIDPKELEDFKLQHGTILG 360
Query: 1211 FPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 1390
FPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER
Sbjct: 361 FPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLER 420
Query: 1391 NIMVIPDLYLNAGRVTVSYFEWLK 1462
NIMVIPDLYLNAG VTVSYFEWLK
Sbjct: 421 NIMVIPDLYLNAGGVTVSYFEWLK 444
Score = 51.6 bits (122), Expect(2) = 0.0
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +1
Query: 1459 EDLNLVTYGRFDFKYERESTYPLLMFV*ENLEKKFEKPGEPFPL 1590
++LN V+YGR FKYER+S Y LLM V E+LE+KF K G P+
Sbjct: 444 KNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPI 487
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,211,948
Number of extensions: 1057116
Number of successful extensions: 3785
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3780
Number of HSP's successfully gapped: 2
Length of query: 531
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 427
Effective length of database: 8,754,644
Effective search space: 3738232988
Effective search space used: 3738232988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003527
(1595 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 745 0.0
gb|JH118749.1| Sus scrofa unplaced genomic scaffold ChrUScaf2240 200 2e-48
Sscrofa_Chr05 200 2e-48
>Sscrofa_Chr14
|| Length = 153851969
Score = 745 bits (376), Expect = 0.0
Identities = 376/376 (100%)
Strand = Plus / Minus
Query: 202 agactcggccgcgctgctgggccggacccgcgggcagcccgccaccgccccgcagccggg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95397403 agactcggccgcgctgctgggccggacccgcgggcagcccgccaccgccccgcagccggg 95397344
Query: 262 tctcgcgccgcccgccaggcgacactatagcgaggcggcggccgaccgcgaggacgaccc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95397343 tctcgcgccgcccgccaggcgacactatagcgaggcggcggccgaccgcgaggacgaccc 95397284
Query: 322 caatttcttcaagatggtggagggcttcttcgatcgcggcgccagcatcgtggaggacaa 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95397283 caatttcttcaagatggtggagggcttcttcgatcgcggcgccagcatcgtggaggacaa 95397224
Query: 382 gctagtggaggacctcaagacccgggagagcgaggagcagaagcggaacagggtgcgtgg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95397223 gctagtggaggacctcaagacccgggagagcgaggagcagaagcggaacagggtgcgtgg 95397164
Query: 442 catcctgcggatcatcaagccctgcaaccatgtgctgagcctgtccttccccatccggcg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95397163 catcctgcggatcatcaagccctgcaaccatgtgctgagcctgtccttccccatccggcg 95397104
Query: 502 cgacgacggatcctgggaggttatcgagggctaccgggcccagcatagccagcaccgtac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95397103 cgacgacggatcctgggaggttatcgagggctaccgggcccagcatagccagcaccgtac 95397044
Query: 562 gccctgcaagggaggt 577
||||||||||||||||
Sbjct: 95397043 gccctgcaagggaggt 95397028
Score = 359 bits (181), Expect = 3e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 872 gatattaatgcccatgcctgtgttactggtaagcccatcagtcagggtggaatccatgga 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95370567 gatattaatgcccatgcctgtgttactggtaagcccatcagtcagggtggaatccatgga 95370508
Query: 932 cgcatctctgctactggtcgtggagttttccatgggattgaaaacttcatcaatgaagct 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95370507 cgcatctctgctactggtcgtggagttttccatgggattgaaaacttcatcaatgaagct 95370448
Query: 992 tcttacatgagtattttagggatgacaccagggtttggagataaaacatttgttgttcag 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95370447 tcttacatgagtattttagggatgacaccagggtttggagataaaacatttgttgttcag 95370388
Query: 1052 g 1052
|
Sbjct: 95370387 g 95370387
Score = 317 bits (160), Expect = 1e-83
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 1 ggaggggacatccaggaaggaaggaagctgcggcttaaaagggaagacagtgccgggtcc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95397604 ggaggggacagccaggaaggaaggaagctgcggcttaaaagggaagacagtgccgggtcc 95397545
Query: 61 tttctccctccgtccgtcagtccccgggcctgcgagagcttctctcctccgcggcctccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95397544 tttctccctccgtccgtcagtccccgggcctgcgagagcttctctcctccgcggcctccg 95397485
Query: 121 ccccgccgccatgtaccgctgcctaggtgaagcgctgctgctgt 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95397484 ccccgccgccatgtaccgctgcctaggtgaagcgctgctgctgt 95397441
Score = 278 bits (140), Expect = 9e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 1050 agggatttggtaatgtgggactgcactcaatgaggtatttacatcgttttggtgctaaat 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95369683 agggatttggtaatgtgggactgcactcaatgaggtatttacatcgttttggtgctaaat 95369624
Query: 1110 gtgttggtgttggtgaatctgatggaagcatatggaatccagatggtattgatccaaagg 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95369623 gtgttggtgttggtgaatctgatggaagcatatggaatccagatggtattgatccaaagg 95369564
Query: 1170 aactggaagacttcaaattg 1189
||||||||||||||||||||
Sbjct: 95369563 aactggaagacttcaaattg 95369544
Score = 268 bits (135), Expect = 9e-69
Identities = 138/139 (99%)
Strand = Plus / Minus
Query: 1189 gcaacatggaacaatcctgggcttccctaaagcaaagatctatgaagggagcatcttgga 1248
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 95369338 gcaacatggaacaatcctgggcttccccaaagcaaagatctatgaagggagcatcttgga 95369279
Query: 1249 ggctgactgtgacatactgattcctgctgccagtgagaagcagctgaccaagtccaatgc 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95369278 ggctgactgtgacatactgattcctgctgccagtgagaagcagctgaccaagtccaatgc 95369219
Query: 1309 acctagagtcaaagccaag 1327
|||||||||||||||||||
Sbjct: 95369218 acctagagtcaaagccaag 95369200
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 776 ggtcctggcattgatgtgcctgccccggacatgagcacaggcgagcgggagatgtcctgg 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95376624 ggtcctggcattgatgtgcctgccccggacatgagcacaggcgagcgggagatgtcctgg 95376565
Query: 836 attgctgacacctatgccagcaccatagggcattatg 872
|||||||||||||||||||||||||||||||||||||
Sbjct: 95376564 attgctgacacctatgccagcaccatagggcattatg 95376528
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 1326 agatcattgctgaaggtgccaatggaccaacaactccagaagctgataagattttcctgg 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95368938 agatcattgctgaaggtgccaatggaccaacaactccagaagctgataagattttcctgg 95368879
Query: 1386 aaaggaacattatggttattccag 1409
||||||||||||||||||||||||
Sbjct: 95368878 aaaggaacattatggttattccag 95368855
Score = 165 bits (83), Expect = 9e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 574 aggtatccgttacagcactgatgtgagcgtagatgaagtgaaagctctggcttctctgat 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95383863 aggtatccgttacagcactgatgtgagcgtagatgaagtgaaagctctggcttctctgat 95383804
Query: 634 gacatataagtgtgcagtggttg 656
|||||||||||||||||||||||
Sbjct: 95383803 gacatataagtgtgcagtggttg 95383781
Score = 145 bits (73), Expect = 9e-32
Identities = 101/109 (92%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 1409 gatctctacttgaatgctggaagagtgacagtatcttactttgagtggctgaag-atcta 1467
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 95367183 gatctctacttgaatgctggaggagtgacagtatcttactttgagtggctgaagaatcta 95367124
Query: 1468 aatcttgtcacctacggccgttttgacttcaaatatgaaagggaatcca 1516
|||| ||||| |||||||||||| |||||||||||||||||| ||||
Sbjct: 95367123 aatcatgtcagctacggccgtttgaccttcaaatatgaaagggattcca 95367075
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 713 gataatgaattggaaaagatcacaaggaggttcaccatggagctggcaaagaagggcttt 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95381607 gataatgaattggaaaagatcacaaggaggttcaccatggagctggcaaagaagggcttt 95381548
Query: 773 attggt 778
||||||
Sbjct: 95381547 attggt 95381542
Score = 115 bits (58), Expect = 8e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 656 gatgtgccatttgggggtgctaaagctggtgttaagatcaaccccaagaactataccg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95382535 gatgtgccatttgggggtgctaaagctggtgttaagatcaaccccaagaactataccg 95382478
>gb|JH118749.1| Sus scrofa unplaced genomic scaffold ChrUScaf2240
Length = 27592
Score = 200 bits (101), Expect = 2e-48
Identities = 443/550 (80%), Gaps = 19/550 (3%)
Strand = Plus / Minus
Query: 879 atgcccatgcctgt-gttactggtaagcccatcagtcagggtggaatccatggacgcatc 937
|||| ||||||||| ||||||||||| ||||||||||||||||| ||||| || | ||
Sbjct: 3867 atgcacatgcctgttgttactggtaa-cccatcagtcagggtggtatccacagatgtttc 3809
Query: 938 tctgctactggtcgtggagttttccatgggattgaaaacttcatcaatgaagcttcttac 997
||||||||| | ||| |||||||||||||||||||||| |||||||| ||| |||
Sbjct: 3808 attgctactggccatggtattttccatgggattgaaaactttctcaatgaaacttattaa 3749
Query: 998 atgagtattttagggatgacaccagggtttggagataaaacatttgttgttcagggattt 1057
|||| |||||||| ||| |||| | |||||||||||||||| | | |||||||||||
Sbjct: 3748 atgaccattttaggtgtgataccaagatttggagataaaacatat--tattcagggattt 3691
Query: 1058 ggtaatgtgggactgcactcaatgaggtatttacatcgttttggtgctaaatgtgttggt 1117
| | ||||| || || | ||||||| | | ||||||||||||| || |
Sbjct: 3690 gaca--gtggggct--------tgtg-tatttacgccatactggtgctaaatgtctta-t 3643
Query: 1118 gttggtgaatctgatggaagcatatggaatccagatggtattgatccaaaggaactggaa 1177
|||||| ||||| |||| |||| || ||| ||||||| ||||| |||||| ||| ||
Sbjct: 3642 gttggtaaatctaatgggagcacctgaaattcagatggcattgacccaaagttactaaaa 3583
Query: 1178 gacttcaaattgcaacatggaacaatcctgggcttccctaaagcaaagatctatgaaggg 1237
||||||| ||| |||||| || |||||||||||||| | || |||||| || |||||
Sbjct: 3582 gacttcagattacaacatagatcaatcctgggcttctccaaggcaaagccttaggaagga 3523
Query: 1238 agcatcttggaggctgactgtgacatactgattcctgctgccagtgagaagcagctgacc 1297
||||||||||| || |||||||||||||||||||||| || |||||||||| |||||
Sbjct: 3522 agcatcttggaagcagactgtgacatactgattcctgagaacaatgagaagcagttgacc 3463
Query: 1298 aagtccaatgcacctagagtcaaagccaagatcattgctgaaggtgccaatggaccaaca 1357
|| |||| ||||| |||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct: 3462 aaatccagtgcactcagagtcaaggccaaggtcattgctgaagttgccaatggaccaaca 3403
Query: 1358 actccagaagctgataagattttcctggaaaggaacattatggttattccagatctctac 1417
|||||||| | ||||||||| |||| ||||||| | |||||||| | | |||||||
Sbjct: 3402 gctccagaatc---taagatttttttggagaggaacactgtggttatttctggtctctac 3346
Query: 1418 ttgaatgctg 1427
||||||||||
Sbjct: 3345 ttgaatgctg 3336
Score = 123 bits (62), Expect = 3e-25
Identities = 107/122 (87%)
Strand = Plus / Minus
Query: 628 tctgatgacatataagtgtgcagtggttgatgtgccatttgggggtgctaaagctggtgt 687
|||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 4123 tctgatgatgtataaatgtgctgtggttgatgtgctatttgggggtgctaaagctggtgt 4064
Query: 688 taagatcaaccccaagaactataccgataatgaattggaaaagatcacaaggaggttcac 747
|||| |||| || |||||| || | ||||||||||||||| |||||||| || ||||||
Sbjct: 4063 taaggtcaatcctaagaaccatgctgataatgaattggaacagatcacagagaagttcac 4004
Query: 748 ca 749
||
Sbjct: 4003 ca 4002
>Sscrofa_Chr05
|| Length = 111506441
Score = 200 bits (101), Expect = 2e-48
Identities = 443/550 (80%), Gaps = 19/550 (3%)
Strand = Plus / Minus
Query: 879 atgcccatgcctgt-gttactggtaagcccatcagtcagggtggaatccatggacgcatc 937
|||| ||||||||| ||||||||||| ||||||||||||||||| ||||| || | ||
Sbjct: 82138297 atgcacatgcctgttgttactggtaa-cccatcagtcagggtggtatccacagatgtttc 82138239
Query: 938 tctgctactggtcgtggagttttccatgggattgaaaacttcatcaatgaagcttcttac 997
||||||||| | ||| |||||||||||||||||||||| |||||||| ||| |||
Sbjct: 82138238 attgctactggccatggtattttccatgggattgaaaactttctcaatgaaacttattaa 82138179
Query: 998 atgagtattttagggatgacaccagggtttggagataaaacatttgttgttcagggattt 1057
|||| |||||||| ||| |||| | |||||||||||||||| | | |||||||||||
Sbjct: 82138178 atgaccattttaggtgtgataccaagatttggagataaaacatat--tattcagggattt 82138121
Query: 1058 ggtaatgtgggactgcactcaatgaggtatttacatcgttttggtgctaaatgtgttggt 1117
| | ||||| || || | ||||||| | | ||||||||||||| || |
Sbjct: 82138120 gaca--gtggggct--------tgtg-tatttacgccatactggtgctaaatgtctta-t 82138073
Query: 1118 gttggtgaatctgatggaagcatatggaatccagatggtattgatccaaaggaactggaa 1177
|||||| ||||| |||| |||| || ||| ||||||| ||||| |||||| ||| ||
Sbjct: 82138072 gttggtaaatctaatgggagcacctgaaattcagatggcattgacccaaagttactaaaa 82138013
Query: 1178 gacttcaaattgcaacatggaacaatcctgggcttccctaaagcaaagatctatgaaggg 1237
||||||| ||| |||||| || |||||||||||||| | || |||||| || |||||
Sbjct: 82138012 gacttcagattacaacatagatcaatcctgggcttctccaaggcaaagccttaggaagga 82137953
Query: 1238 agcatcttggaggctgactgtgacatactgattcctgctgccagtgagaagcagctgacc 1297
||||||||||| || |||||||||||||||||||||| || |||||||||| |||||
Sbjct: 82137952 agcatcttggaagcagactgtgacatactgattcctgagaacaatgagaagcagttgacc 82137893
Query: 1298 aagtccaatgcacctagagtcaaagccaagatcattgctgaaggtgccaatggaccaaca 1357
|| |||| ||||| |||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct: 82137892 aaatccagtgcactcagagtcaaggccaaggtcattgctgaagttgccaatggaccaaca 82137833
Query: 1358 actccagaagctgataagattttcctggaaaggaacattatggttattccagatctctac 1417
|||||||| | ||||||||| |||| ||||||| | |||||||| | | |||||||
Sbjct: 82137832 gctccagaatc---taagatttttttggagaggaacactgtggttatttctggtctctac 82137776
Query: 1418 ttgaatgctg 1427
||||||||||
Sbjct: 82137775 ttgaatgctg 82137766
Score = 200 bits (101), Expect = 2e-48
Identities = 443/550 (80%), Gaps = 19/550 (3%)
Strand = Plus / Plus
Query: 879 atgcccatgcctgt-gttactggtaagcccatcagtcagggtggaatccatggacgcatc 937
|||| ||||||||| ||||||||||| ||||||||||||||||| ||||| || | ||
Sbjct: 82322698 atgcacatgcctgttgttactggtaa-cccatcagtcagggtggtatccacagatgtttc 82322756
Query: 938 tctgctactggtcgtggagttttccatgggattgaaaacttcatcaatgaagcttcttac 997
||||||||| | ||| |||||||||||||||||||||| |||||||| ||| |||
Sbjct: 82322757 attgctactggccatggtattttccatgggattgaaaactttctcaatgaaacttattaa 82322816
Query: 998 atgagtattttagggatgacaccagggtttggagataaaacatttgttgttcagggattt 1057
|||| |||||||| ||| |||| | |||||||||||||||| | | |||||||||||
Sbjct: 82322817 atgaccattttaggtgtgataccaagatttggagataaaacatat--tattcagggattt 82322874
Query: 1058 ggtaatgtgggactgcactcaatgaggtatttacatcgttttggtgctaaatgtgttggt 1117
| | ||||| || || | ||||||| | | ||||||||||||| || |
Sbjct: 82322875 gaca--gtggggct--------tgtg-tatttacgccatactggtgctaaatgtctta-t 82322922
Query: 1118 gttggtgaatctgatggaagcatatggaatccagatggtattgatccaaaggaactggaa 1177
|||||| ||||| |||| |||| || ||| ||||||| ||||| |||||| ||| ||
Sbjct: 82322923 gttggtaaatctaatgggagcacctgaaattcagatggcattgacccaaagttactaaaa 82322982
Query: 1178 gacttcaaattgcaacatggaacaatcctgggcttccctaaagcaaagatctatgaaggg 1237
||||||| ||| |||||| || |||||||||||||| | || |||||| || |||||
Sbjct: 82322983 gacttcagattacaacatagatcaatcctgggcttctccaaggcaaagccttaggaagga 82323042
Query: 1238 agcatcttggaggctgactgtgacatactgattcctgctgccagtgagaagcagctgacc 1297
||||||||||| || |||||||||||||||||||||| || |||||||||| |||||
Sbjct: 82323043 agcatcttggaagcagactgtgacatactgattcctgagaacaatgagaagcagttgacc 82323102
Query: 1298 aagtccaatgcacctagagtcaaagccaagatcattgctgaaggtgccaatggaccaaca 1357
|| |||| ||||| |||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct: 82323103 aaatccagtgcactcagagtcaaggccaaggtcattgctgaagttgccaatggaccaaca 82323162
Query: 1358 actccagaagctgataagattttcctggaaaggaacattatggttattccagatctctac 1417
|||||||| | ||||||||| |||| ||||||| | |||||||| | | |||||||
Sbjct: 82323163 gctccagaatc---taagatttttttggagaggaacactgtggttatttctggtctctac 82323219
Query: 1418 ttgaatgctg 1427
||||||||||
Sbjct: 82323220 ttgaatgctg 82323229
Score = 123 bits (62), Expect = 3e-25
Identities = 107/122 (87%)
Strand = Plus / Minus
Query: 628 tctgatgacatataagtgtgcagtggttgatgtgccatttgggggtgctaaagctggtgt 687
|||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 82138553 tctgatgatgtataaatgtgctgtggttgatgtgctatttgggggtgctaaagctggtgt 82138494
Query: 688 taagatcaaccccaagaactataccgataatgaattggaaaagatcacaaggaggttcac 747
|||| |||| || |||||| || | ||||||||||||||| |||||||| || ||||||
Sbjct: 82138493 taaggtcaatcctaagaaccatgctgataatgaattggaacagatcacagagaagttcac 82138434
Query: 748 ca 749
||
Sbjct: 82138433 ca 82138432
Score = 123 bits (62), Expect = 3e-25
Identities = 107/122 (87%)
Strand = Plus / Plus
Query: 628 tctgatgacatataagtgtgcagtggttgatgtgccatttgggggtgctaaagctggtgt 687
|||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 82322442 tctgatgatgtataaatgtgctgtggttgatgtgctatttgggggtgctaaagctggtgt 82322501
Query: 688 taagatcaaccccaagaactataccgataatgaattggaaaagatcacaaggaggttcac 747
|||| |||| || |||||| || | ||||||||||||||| |||||||| || ||||||
Sbjct: 82322502 taaggtcaatcctaagaaccatgctgataatgaattggaacagatcacagagaagttcac 82322561
Query: 748 ca 749
||
Sbjct: 82322562 ca 82322563
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,538,901
Number of extensions: 291
Number of successful extensions: 291
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 20
Length of query: 1595
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1573
Effective length of database: 2,808,408,574
Effective search space: 4417626686902
Effective search space used: 4417626686902
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)