Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003534
(1030 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073777.1| ubiquitin carboxyl-terminal hydrolase 11 [Bo... 398 e-111
Alignment gi|NP_001039895.1| ubiquitin carboxyl-terminal hydrolase 15 [Bo... 295 4e-80
Alignment gi|NP_001093789.1| ubiquitin carboxyl-terminal hydrolase 4 [Bos... 281 5e-76
Alignment gi|XP_002695689.1| PREDICTED: ubiquitin specific peptidase 32 [... 182 5e-46
Alignment gi|XP_869385.4| PREDICTED: ubiquitin specific peptidase 32 isof... 182 5e-46
Alignment gi|NP_001069594.1| ubiquitin carboxyl-terminal hydrolase 8 [Bos... 122 4e-28
Alignment gi|XP_002697125.1| PREDICTED: ubiquitin specific peptidase 19 [... 114 1e-25
Alignment gi|XP_592460.3| PREDICTED: ubiquitin thioesterase 19 [Bos tauru... 114 1e-25
Alignment gi|NP_001039728.1| ubiquitin carboxyl-terminal hydrolase 2 [Bos... 95 9e-20
Alignment gi|NP_001073699.2| ubiquitin specific peptidase 50 [Bos taurus]. 87 2e-17
>ref|NP_001073777.1| ubiquitin carboxyl-terminal hydrolase 11 [Bos taurus].
Length = 756
Score = 398 bits (1022), Expect = e-111
Identities = 192/206 (93%), Positives = 195/206 (94%)
Frame = +1
Query: 412 MDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAAL 591
MDT HTAQFS TDS+DLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNT VTVLDAAL
Sbjct: 1 MDTPHTAQFSQTDSVDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTRVTVLDAAL 60
Query: 592 KTGQVVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCL 771
KTGQVV+METRNKDGTWPSAQPH S EEEEDFQGQPGICGLTNLGNTCFMNSALQCL
Sbjct: 61 KTGQVVVMETRNKDGTWPSAQPHDTRSTLEEEEDFQGQPGICGLTNLGNTCFMNSALQCL 120
Query: 772 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 951
SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIA+AYADLVKQAWSGHHRSIVP VFK KVG
Sbjct: 121 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAQAYADLVKQAWSGHHRSIVPQVFKTKVG 180
Query: 952 HFASQFLGLQQHDSQELLSFLLDGLH 1029
HFASQFLG QQHDSQELLSFLLDGLH
Sbjct: 181 HFASQFLGYQQHDSQELLSFLLDGLH 206
>ref|NP_001039895.1| ubiquitin carboxyl-terminal hydrolase 15 [Bos taurus].
Length = 952
Score = 295 bits (755), Expect = 4e-80
Identities = 158/336 (47%), Positives = 211/336 (62%), Gaps = 26/336 (7%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGED 255
+LV+ W+++W++YV Q GDQ+ PG I+N+GL D LK+ L++ D
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLRDGDAQSLKEHLIDELD 88
Query: 256 YVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQHSDMDTAH 426
Y+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++ +M+
Sbjct: 89 YILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVV 148
Query: 427 TAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQV 606
T +FS D++D + R+ F + ++ETRLW K +FE L T+ DA L GQV
Sbjct: 149 TRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV 208
Query: 607 VIMETRNKDGTWPS--AQPHAMNS-------ATEEEEDFQG------QPGICGLTNLGNT 741
+++E +N+DGTWP + P+ NS + D+ QPG+CGL+NLGNT
Sbjct: 209 LVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNT 268
Query: 742 CFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSI 921
CFMNSA QCLSN P LTEYFL ++Y EELNF NPLGM+GEIA++YA+L+KQ WSG + +
Sbjct: 269 CFMNSAFQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYV 328
Query: 922 VPHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
P FK +VG FA QF G QQ D QELL+FLLDGLH
Sbjct: 329 TPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLH 364
>ref|NP_001093789.1| ubiquitin carboxyl-terminal hydrolase 4 [Bos taurus].
Length = 963
Score = 281 bits (720), Expect = 5e-76
Identities = 164/386 (42%), Positives = 218/386 (56%), Gaps = 63/386 (16%)
Frame = +1
Query: 61 LWRSPSQDGRKCRFLVEQHWYQKWEEYVQGGDQDS------STSPGCINNAGLFEDQVNW 222
L R+ Q G + +L++ W+++W++YV D + PG I+N+GLF D +
Sbjct: 23 LMRTTLQRGAQW-YLIDSRWFKQWKKYVGFDSWDMYNVGEHNLYPGPIDNSGLFSDPESQ 81
Query: 223 RLKKGLVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQ----KVEVYPVEL 390
LK+ L++ DYVL+PA AW+ L+NWYG GQ P+ RKVVE G+ KVEVY +EL
Sbjct: 82 TLKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVE-HGLFVKHCKVEVYLLEL 140
Query: 391 LLVQHSDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHV 570
L ++SD + FS D++ + R+ F + + ETRLW K ++E+L
Sbjct: 141 KLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDN 200
Query: 571 TVLDAALKTGQVVIMETRNKDGTWP----------------------SAQPHAMNSAT-- 678
TV DA L GQV+++E +N+DGTWP SA P++ SA+
Sbjct: 201 TVQDAGLYQGQVLVIEPQNEDGTWPRQTQQSKSSTAPSRNFTTSPKSSASPYSSVSASPI 260
Query: 679 -----------------------------EEEEDFQGQPGICGLTNLGNTCFMNSALQCL 771
+E QPG+CGL NLGNTCFMNSALQCL
Sbjct: 261 ANGDSTNTSGMHSSGVSRGGSGFSASYNCQESPLTHVQPGLCGLGNLGNTCFMNSALQCL 320
Query: 772 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 951
SN LT+YFLK+ Y E+N NPLGMKGEIAEAYA+L+KQ WSG + P +FK +VG
Sbjct: 321 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 380
Query: 952 HFASQFLGLQQHDSQELLSFLLDGLH 1029
FA QF G QQ DSQELL+FLLDGLH
Sbjct: 381 RFAPQFSGYQQQDSQELLAFLLDGLH 406
>ref|XP_002695689.1| PREDICTED: ubiquitin specific peptidase 32 [Bos taurus].
Length = 1543
Score = 182 bits (461), Expect = 5e-46
Identities = 109/322 (33%), Positives = 165/322 (51%), Gaps = 37/322 (11%)
Frame = +1
Query: 175 PGCINNAGLFEDQV---------NWRLKKG--LVEGEDYVLLPAAAWHYLVNWYG--LEH 315
PG I+N L + RLK+ L+ G DY ++P W L +WYG L
Sbjct: 460 PGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGANLAL 519
Query: 316 GQPPVERKVVELPGIQKVEVYPVELLLVQHSDMDT------------------------A 423
+P ++ E+P ++E++P LL ++ A
Sbjct: 520 PRPVIKNSKTEIP---ELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVLA 576
Query: 424 HTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQ 603
+T FS ++ + H Q L +E+ RLW+ N+E L + + ++ Q
Sbjct: 577 YTGCFSRMQTIKEI-HEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHRLEYLKIQDEQ 635
Query: 604 VVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVP 783
+++E RNKD +WP NS+ + + G GL+NLGNTCFMNS++QC+SN
Sbjct: 636 HLVIEVRNKDMSWPEEMSFIANSSKIDRHKVPTEKGATGLSNLGNTCFMNSSIQCVSNTQ 695
Query: 784 QLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFAS 963
LT+YF+ R+L ELN NP+GMKG +A+ Y DLV++ WSG +++ P + + +A
Sbjct: 696 PLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAP 755
Query: 964 QFLGLQQHDSQELLSFLLDGLH 1029
+F G QQ DSQELL+FLLDGLH
Sbjct: 756 RFNGFQQQDSQELLAFLLDGLH 777
>ref|XP_869385.4| PREDICTED: ubiquitin specific peptidase 32 isoform 3 [Bos taurus].
Length = 1543
Score = 182 bits (461), Expect = 5e-46
Identities = 109/322 (33%), Positives = 165/322 (51%), Gaps = 37/322 (11%)
Frame = +1
Query: 175 PGCINNAGLFEDQV---------NWRLKKG--LVEGEDYVLLPAAAWHYLVNWYG--LEH 315
PG I+N L + RLK+ L+ G DY ++P W L +WYG L
Sbjct: 460 PGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGANLAL 519
Query: 316 GQPPVERKVVELPGIQKVEVYPVELLLVQHSDMDT------------------------A 423
+P ++ E+P ++E++P LL ++ A
Sbjct: 520 PRPVIKNSKTEIP---ELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVLA 576
Query: 424 HTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQ 603
+T FS ++ + H Q L +E+ RLW+ N+E L + + ++ Q
Sbjct: 577 YTGCFSRMQTIKEI-HEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHRLEYLKIQDEQ 635
Query: 604 VVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVP 783
+++E RNKD +WP NS+ + + G GL+NLGNTCFMNS++QC+SN
Sbjct: 636 HLVIEVRNKDMSWPEEMSFIANSSKIDRHKVPTEKGATGLSNLGNTCFMNSSIQCVSNTQ 695
Query: 784 QLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFAS 963
LT+YF+ R+L ELN NP+GMKG +A+ Y DLV++ WSG +++ P + + +A
Sbjct: 696 PLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAP 755
Query: 964 QFLGLQQHDSQELLSFLLDGLH 1029
+F G QQ DSQELL+FLLDGLH
Sbjct: 756 RFNGFQQQDSQELLAFLLDGLH 777
>ref|NP_001069594.1| ubiquitin carboxyl-terminal hydrolase 8 [Bos taurus].
Length = 1085
Score = 122 bits (307), Expect = 4e-28
Identities = 63/138 (45%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Frame = +1
Query: 625 NKDGTWPSAQPHAMNSATEEEED--FQGQ-PGICGLTNLGNTCFMNSALQCLSNVPQLTE 795
NK ++P A+ ++++ + F G P + GL NLGNTC+MNS LQCL N P L +
Sbjct: 711 NKPTSYPKAEITRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNTPHLAD 770
Query: 796 YFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLG 975
YF +N Y +++N N LG KGE+AE + ++K W+G +R I P FK +G QF G
Sbjct: 771 YFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG 830
Query: 976 LQQHDSQELLSFLLDGLH 1029
Q DSQELL FL+DGLH
Sbjct: 831 YSQQDSQELLLFLMDGLH 848
>ref|XP_002697125.1| PREDICTED: ubiquitin specific peptidase 19 [Bos taurus].
Length = 1238
Score = 114 bits (286), Expect = 1e-25
Identities = 57/117 (48%), Positives = 72/117 (61%)
Frame = +1
Query: 679 EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKG 858
EEEE PG GL NLGNTCFMNS +Q LSN +L ++F + E+N+ NPLG G
Sbjct: 442 EEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGG 501
Query: 859 EIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
+A +A L++ W G H + P K V ASQF G QHD+QE ++FLLDGLH
Sbjct: 502 RLAIGFAVLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLH 558
>ref|XP_592460.3| PREDICTED: ubiquitin thioesterase 19 [Bos taurus].
Length = 1238
Score = 114 bits (286), Expect = 1e-25
Identities = 57/117 (48%), Positives = 72/117 (61%)
Frame = +1
Query: 679 EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKG 858
EEEE PG GL NLGNTCFMNS +Q LSN +L ++F + E+N+ NPLG G
Sbjct: 442 EEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGG 501
Query: 859 EIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
+A +A L++ W G H + P K V ASQF G QHD+QE ++FLLDGLH
Sbjct: 502 RLAIGFAVLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLH 558
>ref|NP_001039728.1| ubiquitin carboxyl-terminal hydrolase 2 [Bos taurus].
Length = 606
Score = 95.1 bits (235), Expect = 9e-20
Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +1
Query: 709 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLV 888
G+ GL NLGNTCFMNS LQCLSN +L +Y L+ YL +L+ + + E +A L+
Sbjct: 266 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSS--RAHTALMEEFAKLI 323
Query: 889 KQAWSGHHRSIV-PHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
+ W+ +V P FK ++ +A +F+G Q D+QE L FLLDGLH
Sbjct: 324 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLH 371
>ref|NP_001073699.2| ubiquitin specific peptidase 50 [Bos taurus].
Length = 378
Score = 87.0 bits (214), Expect = 2e-17
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +1
Query: 655 PHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEEL-N 831
P +N A E + QG + GL NLGNTC+MN+ LQCL ++ L EYFL +Y+ L
Sbjct: 32 PCPVNEAEENQPHLQG---VTGLRNLGNTCYMNAILQCLCSISPLVEYFLSGKYINALQK 88
Query: 832 FCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSF 1011
C+ E+A A+A ++ W G + P +F++ +G+ F+ Q D+QE L +
Sbjct: 89 DCS------EVATAFAYVMTDMWLGDSDCVSPEIFRSALGNLYPVFMKKTQQDAQEFLIY 142
Query: 1012 LLDGLH 1029
+L+ LH
Sbjct: 143 VLNELH 148
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,459,665
Number of extensions: 1265818
Number of successful extensions: 5517
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 5473
Number of HSP's successfully gapped: 30
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003534
(1030 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001183969.1| ubiquitin carboxyl-terminal hydrolase 11 [Ca... 401 e-112
Alignment gi|XP_860441.1| PREDICTED: similar to ubiquitin specific protea... 299 3e-81
Alignment gi|XP_860368.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 284 1e-76
Alignment gi|XP_849935.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 284 1e-76
Alignment gi|XP_860508.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 283 2e-76
Alignment gi|XP_533829.2| PREDICTED: similar to ubiquitin specific protea... 280 2e-75
Alignment gi|XP_860477.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 246 2e-65
Alignment gi|XP_537710.2| PREDICTED: similar to ubiquitin specific protea... 182 6e-46
Alignment gi|XP_531655.2| PREDICTED: similar to ubiquitin specific protea... 167 2e-41
Alignment gi|XP_860230.1| PREDICTED: similar to ubiquitin specific protea... 164 2e-40
>ref|NP_001183969.1| ubiquitin carboxyl-terminal hydrolase 11 [Canis lupus familiaris].
Length = 770
Score = 401 bits (1031), Expect = e-112
Identities = 194/206 (94%), Positives = 197/206 (95%)
Frame = +1
Query: 412 MDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAAL 591
MDT HTAQFSHTDS+DLVL TARE FLVSPQEETRLWIKNAEGSFERLCNT VTVLDAAL
Sbjct: 1 MDTPHTAQFSHTDSVDLVLRTAREHFLVSPQEETRLWIKNAEGSFERLCNTRVTVLDAAL 60
Query: 592 KTGQVVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCL 771
KTGQVVIMETRNKDGTWPSAQP A+N+A EEEEDFQGQPGICGLTNLGNTCFMNSALQCL
Sbjct: 61 KTGQVVIMETRNKDGTWPSAQPQAVNTALEEEEDFQGQPGICGLTNLGNTCFMNSALQCL 120
Query: 772 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 951
SNVPQLTEYFLKN YLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFK KVG
Sbjct: 121 SNVPQLTEYFLKNHYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKTKVG 180
Query: 952 HFASQFLGLQQHDSQELLSFLLDGLH 1029
HFASQFLG QQHDSQELLSFLLDGLH
Sbjct: 181 HFASQFLGYQQHDSQELLSFLLDGLH 206
>ref|XP_860441.1| PREDICTED: similar to ubiquitin specific protease 15 isoform 9 [Canis
familiaris].
Length = 924
Score = 299 bits (766), Expect = 3e-81
Identities = 156/327 (47%), Positives = 209/327 (63%), Gaps = 17/327 (5%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGED 255
+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+ L++ D
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKEHLIDELD 88
Query: 256 YVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQHSDMDTAH 426
Y+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++ +M+
Sbjct: 89 YILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVV 148
Query: 427 TAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQV 606
T +FS D++D + R+ F + ++ETRLW K +FE L T+ DA L GQV
Sbjct: 149 TRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV 208
Query: 607 VIMETRNKDGTWPSAQPHAMNSATEEEEDFQG------QPGICGLTNLGNTCFMNSALQC 768
+++E +N+DGTWP +S+ D+ QPG+CGL+NLGNTCFMNSA+QC
Sbjct: 209 LVIEQKNEDGTWPRGDEEYNDSSFNLNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQC 268
Query: 769 LSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKV 948
LSN P LTEYFL ++Y EELNF NPLGM+GEIA++YA+L+KQ WSG + P FK +V
Sbjct: 269 LSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQV 328
Query: 949 GHFASQFLGLQQHDSQELLSFLLDGLH 1029
G FA QF G QQ D QELL+FLLDGLH
Sbjct: 329 GRFAPQFSGYQQQDCQELLAFLLDGLH 355
>ref|XP_860368.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 15
(Ubiquitin thiolesterase 15) (Ubiquitin-specific
processing protease 15) (Deubiquitinating enzyme 15)
(Unph-2) (Unph4) isoform 7 [Canis familiaris].
Length = 838
Score = 284 bits (726), Expect = 1e-76
Identities = 158/365 (43%), Positives = 214/365 (58%), Gaps = 55/365 (15%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGED 255
+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+ L++ D
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKEHLIDELD 88
Query: 256 YVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQHSDMDTAH 426
Y+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++ +M+
Sbjct: 89 YILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVV 148
Query: 427 TAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQV 606
T +FS D++D + R+ F + ++ETRLW K +FE L T+ DA L GQV
Sbjct: 149 TRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV 208
Query: 607 VIMETRNKDGTWP--------------SAQP-----------HAMNSATEEEEDF----- 696
+++E +N+DGTWP SA P + +N+ + ++
Sbjct: 209 LVIEQKNEDGTWPRGPSAPKSPGASNFSALPKISPSSLSNNYNNINNRNVKNSNYCLPSY 268
Query: 697 --------------QGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNF 834
QPG+CGL+NLGNTCFMNSA+QCLSN P LTEYFL ++Y EELNF
Sbjct: 269 TAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNF 328
Query: 835 CNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFL 1014
NPLGM+GEIA++YA+L+KQ WSG + P FK +VG FA QF G QQ D QELL+FL
Sbjct: 329 DNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFL 388
Query: 1015 LDGLH 1029
LDGLH
Sbjct: 389 LDGLH 393
>ref|XP_849935.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 15
(Ubiquitin thiolesterase 15) (Ubiquitin-specific
processing protease 15) (Deubiquitinating enzyme 15)
(Unph-2) (Unph4) isoform 2 [Canis familiaris].
Length = 981
Score = 284 bits (726), Expect = 1e-76
Identities = 158/365 (43%), Positives = 214/365 (58%), Gaps = 55/365 (15%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGED 255
+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+ L++ D
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKEHLIDELD 88
Query: 256 YVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQHSDMDTAH 426
Y+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++ +M+
Sbjct: 89 YILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVV 148
Query: 427 TAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQV 606
T +FS D++D + R+ F + ++ETRLW K +FE L T+ DA L GQV
Sbjct: 149 TRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV 208
Query: 607 VIMETRNKDGTWP--------------SAQP-----------HAMNSATEEEEDF----- 696
+++E +N+DGTWP SA P + +N+ + ++
Sbjct: 209 LVIEQKNEDGTWPRGPSAPKSPGASNFSALPKISPSSLSNNYNNINNRNVKNSNYCLPSY 268
Query: 697 --------------QGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNF 834
QPG+CGL+NLGNTCFMNSA+QCLSN P LTEYFL ++Y EELNF
Sbjct: 269 TAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNF 328
Query: 835 CNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFL 1014
NPLGM+GEIA++YA+L+KQ WSG + P FK +VG FA QF G QQ D QELL+FL
Sbjct: 329 DNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFL 388
Query: 1015 LDGLH 1029
LDGLH
Sbjct: 389 LDGLH 393
>ref|XP_860508.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 15
(Ubiquitin thiolesterase 15) (Ubiquitin-specific
processing protease 15) (Deubiquitinating enzyme 15)
(Unph-2) (Unph4) isoform 11 [Canis familiaris].
Length = 974
Score = 283 bits (723), Expect = 2e-76
Identities = 162/377 (42%), Positives = 213/377 (56%), Gaps = 67/377 (17%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGED 255
+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+ L++ D
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKEHLIDELD 88
Query: 256 YVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQHSDMDTAH 426
Y+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++ +M+
Sbjct: 89 YILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVV 148
Query: 427 TAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQV 606
T +FS D++D + R+ F + ++ETRLW K +FE L T+ DA L GQV
Sbjct: 149 TRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV 208
Query: 607 VIMETRNKDGTWPSAQ-------------------------PHAMNSAT----EEEEDFQ 699
+++E +N+DGTWP A P A SA+ E Q
Sbjct: 209 LVIEQKNEDGTWPRASLIAKVATAQDDITGDGTTSDPASPSPSACVSASLCAEGEAVSMQ 268
Query: 700 G---------------------------QPGICGLTNLGNTCFMNSALQCLSNVPQLTEY 798
G QPG+CGL+NLGNTCFMNSA+QCLSN P LTEY
Sbjct: 269 GPRRGIRSRGSLGGAVNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEY 328
Query: 799 FLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGL 978
FL ++Y EELNF NPLGM+GEIA++YA+L+KQ WSG + P FK +VG FA QF G
Sbjct: 329 FLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGY 388
Query: 979 QQHDSQELLSFLLDGLH 1029
QQ D QELL+FLLDGLH
Sbjct: 389 QQQDCQELLAFLLDGLH 405
>ref|XP_533829.2| PREDICTED: similar to ubiquitin specific protease, proto-oncogene
isoform a [Canis familiaris].
Length = 1037
Score = 280 bits (716), Expect = 2e-75
Identities = 162/386 (41%), Positives = 218/386 (56%), Gaps = 63/386 (16%)
Frame = +1
Query: 61 LWRSPSQDGRKCRFLVEQHWYQKWEEYVQGGDQDS------STSPGCINNAGLFEDQVNW 222
L R+ Q G + +L++ W+++W++YV D + PG I+N+GLF D +
Sbjct: 96 LMRTTLQRGAQW-YLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQ 154
Query: 223 RLKKGLVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQ----KVEVYPVEL 390
LK+ L++ DYVL+P AW+ L+NWYG GQ P+ RKVVE G+ KVEVY +EL
Sbjct: 155 TLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVE-HGLFVKHCKVEVYLLEL 213
Query: 391 LLVQHSDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHV 570
L ++S+ + FS D++ + R+ F + + ETRLW K ++E+L
Sbjct: 214 KLCENSNPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDN 273
Query: 571 TVLDAALKTGQVVIMETRNKDGTWP----------------------SAQPHAMNSAT-- 678
TV DA L GQV+++E +N+DGTWP SA P++ SA+
Sbjct: 274 TVQDAGLYQGQVLVIEPQNEDGTWPRQTLQSKSSTAPSRNFPTSPTSSASPYSSVSASPI 333
Query: 679 -----------------------------EEEEDFQGQPGICGLTNLGNTCFMNSALQCL 771
+E QPG+CGL NLGNTCFMNSALQCL
Sbjct: 334 ANGDSTNTSGMHSSGVSRGGSGFSASYNCQESPSSHIQPGLCGLGNLGNTCFMNSALQCL 393
Query: 772 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 951
SN LT+YFLK++Y E+N NPLGMKGEIAEAYA+L+KQ WSG + P +FK +VG
Sbjct: 394 SNTAPLTDYFLKDKYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVG 453
Query: 952 HFASQFLGLQQHDSQELLSFLLDGLH 1029
FA QF G QQ DSQELL+FLLDGLH
Sbjct: 454 RFAPQFSGYQQQDSQELLAFLLDGLH 479
>ref|XP_860477.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 15
(Ubiquitin thiolesterase 15) (Ubiquitin-specific
processing protease 15) (Deubiquitinating enzyme 15)
(Unph-2) (Unph4) isoform 10 [Canis familiaris].
Length = 957
Score = 246 bits (629), Expect = 2e-65
Identities = 148/379 (39%), Positives = 204/379 (53%), Gaps = 69/379 (18%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGED 255
+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+ L++ D
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKEHLIDELD 88
Query: 256 YVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQHSDMDTAH 426
Y+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++ +M+
Sbjct: 89 YILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVV 148
Query: 427 TAQFSHTDSLDLVLHTAREQFLVSPQEETRLWI--------------------------- 525
T +FS D++D + R+ F + ++ETRLW
Sbjct: 149 TRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV 208
Query: 526 -----KNAEGSFERLC--------------------------NTHVTVLDAALKTGQVVI 612
KN +G++ R+ NT + D + K +
Sbjct: 209 LVIEQKNEDGTWPRVSSFYLNSVSYSVILVSGVEFKDSSLTYNTQCSSQDISHKDSNTNV 268
Query: 613 METRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLT 792
+N + PS + +E + + QPG+CGL+NLGNTCFMNSA+QCLSN P LT
Sbjct: 269 ---KNSNYCLPSYTAYKNYDYSEPGRNNE-QPGLCGLSNLGNTCFMNSAIQCLSNTPPLT 324
Query: 793 EYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFL 972
EYFL ++Y EELNF NPLGM+GEIA++YA+L+KQ WSG + P FK +VG FA QF
Sbjct: 325 EYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFS 384
Query: 973 GLQQHDSQELLSFLLDGLH 1029
G QQ D QELL+FLLDGLH
Sbjct: 385 GYQQQDCQELLAFLLDGLH 403
>ref|XP_537710.2| PREDICTED: similar to ubiquitin specific protease 32 isoform 1 [Canis
familiaris].
Length = 1221
Score = 182 bits (461), Expect = 6e-46
Identities = 109/322 (33%), Positives = 165/322 (51%), Gaps = 37/322 (11%)
Frame = +1
Query: 175 PGCINNAGLFEDQV---------NWRLKKG--LVEGEDYVLLPAAAWHYLVNWYG--LEH 315
PG I+N L + RLK+ L+ G DY ++P W L +WYG L
Sbjct: 138 PGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGANLAL 197
Query: 316 GQPPVERKVVELPGIQKVEVYPVELLLVQHSDMDT------------------------A 423
+P ++ E+P ++E++P LL ++ A
Sbjct: 198 PRPVIKNSKTEIP---ELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVLA 254
Query: 424 HTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQ 603
+T FS ++ + H Q L +E+ RLW+ N+E L + + ++ Q
Sbjct: 255 YTGCFSRMQTIKEI-HEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHRLEYLKIQDEQ 313
Query: 604 VVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVP 783
+++E RNKD +WP NS+ + + G GL+NLGNTCFMNS++QC+SN
Sbjct: 314 HLVIEVRNKDMSWPEEMSFIANSSKIDRHKVPTEKGATGLSNLGNTCFMNSSIQCVSNTQ 373
Query: 784 QLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFAS 963
LT+YF+ R+L ELN NP+GMKG +A+ Y DLV++ WSG +++ P + + +A
Sbjct: 374 PLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAP 433
Query: 964 QFLGLQQHDSQELLSFLLDGLH 1029
+F G QQ DSQELL+FLLDGLH
Sbjct: 434 RFNGFQQQDSQELLAFLLDGLH 455
>ref|XP_531655.2| PREDICTED: similar to ubiquitin specific protease 15 isoform 1 [Canis
familiaris].
Length = 739
Score = 167 bits (422), Expect = 2e-41
Identities = 76/109 (69%), Positives = 89/109 (81%)
Frame = +1
Query: 703 QPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYAD 882
QPG+CGL+NLGNTCFMNSA+QCLSN P LTEYFL ++Y EELNF NPLGM+GEIA++YA+
Sbjct: 43 QPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAE 102
Query: 883 LVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
L+KQ WSG + P FK +VG FA QF G QQ D QELL+FLLDGLH
Sbjct: 103 LIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLH 151
>ref|XP_860230.1| PREDICTED: similar to ubiquitin specific protease 15 isoform 3
[Canis familiaris].
Length = 356
Score = 164 bits (414), Expect = 2e-40
Identities = 105/294 (35%), Positives = 153/294 (52%), Gaps = 56/294 (19%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGED 255
+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+ L++ D
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKEHLIDELD 88
Query: 256 YVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQHSDMDTAH 426
Y+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++ +M+
Sbjct: 89 YILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVV 148
Query: 427 TAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQV 606
T +FS D++D + R+ F + ++ETRLW K +FE L T+ DA L GQV
Sbjct: 149 TRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV 208
Query: 607 VIMETRNKDGTWP--------------SAQP-----------HAMNSATEEEEDF----- 696
+++E +N+DGTWP SA P + +N+ + ++
Sbjct: 209 LVIEQKNEDGTWPRGPSAPKSPGASNFSALPKISPSSLSNNYNNINNRNVKNSNYCLPSY 268
Query: 697 --------------QGQPGICGLTNLGNTCFMNSALQC-LSNVPQLTEYFLKNR 813
QPG+CGL+NLGNTCFMNSA+Q LS V L + N+
Sbjct: 269 TAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQVGLSKVKLLCFMEISNK 322
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,186,606
Number of extensions: 1302791
Number of successful extensions: 5807
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 5744
Number of HSP's successfully gapped: 51
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003534
(1030 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004642.2| ubiquitin carboxyl-terminal hydrolase 11 [Homo ... 557 e-159
Alignment gi|NP_006304.1| ubiquitin carboxyl-terminal hydrolase 15 [Homo ... 295 4e-80
Alignment gi|NP_955475.1| ubiquitin carboxyl-terminal hydrolase 4 isoform... 293 2e-79
Alignment gi|NP_003354.2| ubiquitin carboxyl-terminal hydrolase 4 isoform... 281 9e-76
Alignment gi|NP_115971.2| ubiquitin carboxyl-terminal hydrolase 32 [Homo ... 181 1e-45
Alignment gi|NP_004496.2| ubiquitin carboxyl-terminal hydrolase 6 [Homo s... 149 4e-36
Alignment gi|NP_001122083.1| ubiquitin carboxyl-terminal hydrolase 8 [Hom... 122 5e-28
Alignment gi|NP_001122082.1| ubiquitin carboxyl-terminal hydrolase 8 [Hom... 122 5e-28
Alignment gi|NP_005145.3| ubiquitin carboxyl-terminal hydrolase 8 [Homo s... 122 5e-28
Alignment gi|NP_006668.1| ubiquitin carboxyl-terminal hydrolase 19 isofor... 114 1e-25
>ref|NP_004642.2| ubiquitin carboxyl-terminal hydrolase 11 [Homo sapiens].
Length = 963
Score = 557 bits (1435), Expect = e-159
Identities = 261/311 (83%), Positives = 289/311 (92%), Gaps = 1/311 (0%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYVQGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGEDYVLLPAAA 279
FLVE+HWY++WE YVQGGDQDSST PGCINNA LF+D++NWRLK+GLVEGEDYVLLPAAA
Sbjct: 103 FLVEKHWYKQWEAYVQGGDQDSSTFPGCINNATLFQDEINWRLKEGLVEGEDYVLLPAAA 162
Query: 280 WHYLVNWYGLEHGQPPVERKVVELPGIQKVEVYPVELLLVQHSDMDTAHTAQFSHTDSLD 459
WHYLV+WYGLEHGQPP+ERKV+ELP IQKVEVYPVELLLV+H+D+ +HT QFSHTDS+
Sbjct: 163 WHYLVSWYGLEHGQPPIERKVIELPNIQKVEVYPVELLLVRHNDLGKSHTVQFSHTDSIG 222
Query: 460 LVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQVVIMETRNKDGT 639
LVL TARE+FLV PQE+TRLW KN+EGS +RL +TH+TVLDAAL+TGQ++IMETR KDGT
Sbjct: 223 LVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHITVLDAALETGQLIIMETRKKDGT 282
Query: 640 WPSAQPHAM-NSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRY 816
WPSAQ H M N+ +EE+EDF+GQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFL N Y
Sbjct: 283 WPSAQLHVMNNNMSEEDEDFKGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCY 342
Query: 817 LEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQ 996
LEELNF NPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLG QQHDSQ
Sbjct: 343 LEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQ 402
Query: 997 ELLSFLLDGLH 1029
ELLSFLLDGLH
Sbjct: 403 ELLSFLLDGLH 413
>ref|NP_006304.1| ubiquitin carboxyl-terminal hydrolase 15 [Homo sapiens].
Length = 952
Score = 295 bits (756), Expect = 4e-80
Identities = 158/336 (47%), Positives = 212/336 (63%), Gaps = 26/336 (7%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGED 255
+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+ L++ D
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKEHLIDELD 88
Query: 256 YVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQHSDMDTAH 426
Y+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++ +M+
Sbjct: 89 YILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVV 148
Query: 427 TAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQV 606
T +FS D++D + R+ F + ++ETRLW K +FE L T+ DA L GQV
Sbjct: 149 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV 208
Query: 607 VIMETRNKDGTWPS--AQPHAMNS-------ATEEEEDFQG------QPGICGLTNLGNT 741
+++E +N+DGTWP + P+ NS + D+ QPG+CGL+NLGNT
Sbjct: 209 LVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNT 268
Query: 742 CFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSI 921
CFMNSA+QCLSN P LTEYFL ++Y EELNF NPLGM+GEIA++YA+L+KQ WSG +
Sbjct: 269 CFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYV 328
Query: 922 VPHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
P FK +VG FA QF G QQ D QELL+FLLDGLH
Sbjct: 329 TPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLH 364
>ref|NP_955475.1| ubiquitin carboxyl-terminal hydrolase 4 isoform b [Homo sapiens].
Length = 916
Score = 293 bits (749), Expect = 2e-79
Identities = 159/339 (46%), Positives = 211/339 (62%), Gaps = 16/339 (4%)
Frame = +1
Query: 61 LWRSPSQDGRKCRFLVEQHWYQKWEEYVQGGDQDS------STSPGCINNAGLFEDQVNW 222
L R+ Q G + +L++ W+++W++YV D + PG I+N+GLF D +
Sbjct: 23 LMRTTLQRGAQW-YLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQ 81
Query: 223 RLKKGLVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQ----KVEVYPVEL 390
LK+ L++ DYVL+P AW+ L+NWYG GQ P+ RKVVE G+ KVEVY +EL
Sbjct: 82 TLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVE-HGLFVKHCKVEVYLLEL 140
Query: 391 LLVQHSDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHV 570
L ++SD + FS D++ + R+ F + + ETRLW K ++E+L
Sbjct: 141 KLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDN 200
Query: 571 TVLDAALKTGQVVIMETRNKDGTWPSAQPHAMNSA------TEEEEDFQGQPGICGLTNL 732
TV DA L GQV+++E +N+DGTWP + S +E QPG+CGL NL
Sbjct: 201 TVQDAGLYQGQVLVIEPQNEDGTWPRQTLQSNGSGFSASYNCQEPPSSHIQPGLCGLGNL 260
Query: 733 GNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHH 912
GNTCFMNSALQCLSN LT+YFLK+ Y E+N NPLGMKGEIAEAYA+L+KQ WSG
Sbjct: 261 GNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRD 320
Query: 913 RSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
+ P +FK +VG FA QF G QQ DSQELL+FLLDGLH
Sbjct: 321 AHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLH 359
>ref|NP_003354.2| ubiquitin carboxyl-terminal hydrolase 4 isoform a [Homo sapiens].
Length = 963
Score = 281 bits (718), Expect = 9e-76
Identities = 163/386 (42%), Positives = 217/386 (56%), Gaps = 63/386 (16%)
Frame = +1
Query: 61 LWRSPSQDGRKCRFLVEQHWYQKWEEYVQGGDQDS------STSPGCINNAGLFEDQVNW 222
L R+ Q G + +L++ W+++W++YV D + PG I+N+GLF D +
Sbjct: 23 LMRTTLQRGAQW-YLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQ 81
Query: 223 RLKKGLVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQ----KVEVYPVEL 390
LK+ L++ DYVL+P AW+ L+NWYG GQ P+ RKVVE G+ KVEVY +EL
Sbjct: 82 TLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVE-HGLFVKHCKVEVYLLEL 140
Query: 391 LLVQHSDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHV 570
L ++SD + FS D++ + R+ F + + ETRLW K ++E+L
Sbjct: 141 KLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDN 200
Query: 571 TVLDAALKTGQVVIMETRNKDGTWP----------------------SAQPHAMNSAT-- 678
TV DA L GQV+++E +N+DGTWP SA P++ SA+
Sbjct: 201 TVQDAGLYQGQVLVIEPQNEDGTWPRQTLQSKSSTAPSRNFTTSPKSSASPYSSVSASLI 260
Query: 679 -----------------------------EEEEDFQGQPGICGLTNLGNTCFMNSALQCL 771
+E QPG+CGL NLGNTCFMNSALQCL
Sbjct: 261 ANGDSTSTCGMHSSGVSRGGSGFSASYNCQEPPSSHIQPGLCGLGNLGNTCFMNSALQCL 320
Query: 772 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 951
SN LT+YFLK+ Y E+N NPLGMKGEIAEAYA+L+KQ WSG + P +FK +VG
Sbjct: 321 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 380
Query: 952 HFASQFLGLQQHDSQELLSFLLDGLH 1029
FA QF G QQ DSQELL+FLLDGLH
Sbjct: 381 RFAPQFSGYQQQDSQELLAFLLDGLH 406
>ref|NP_115971.2| ubiquitin carboxyl-terminal hydrolase 32 [Homo sapiens].
Length = 1604
Score = 181 bits (458), Expect = 1e-45
Identities = 108/322 (33%), Positives = 165/322 (51%), Gaps = 37/322 (11%)
Frame = +1
Query: 175 PGCINNAGLFEDQV---------NWRLKKG--LVEGEDYVLLPAAAWHYLVNWYG--LEH 315
PG I+N L + RLK+ L+ G DY ++P W L +WYG L
Sbjct: 521 PGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGANLAL 580
Query: 316 GQPPVERKVVELPGIQKVEVYPVELLLVQHSDMDT------------------------A 423
+P ++ ++P ++E++P LL ++ A
Sbjct: 581 PRPVIKNSKTDIP---ELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVLA 637
Query: 424 HTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQ 603
+T FS ++ + H Q L +E+ RLW+ N+E L + + ++ Q
Sbjct: 638 YTGCFSRMQTIKEI-HEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHKLEYLKIQDEQ 696
Query: 604 VVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVP 783
+++E RNKD +WP NS+ + + G GL+NLGNTCFMNS++QC+SN
Sbjct: 697 HLVIEVRNKDMSWPEEMSFIANSSKIDRHKVPTEKGATGLSNLGNTCFMNSSIQCVSNTQ 756
Query: 784 QLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFAS 963
LT+YF+ R+L ELN NP+GMKG +A+ Y DLV++ WSG +++ P + + +A
Sbjct: 757 PLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAP 816
Query: 964 QFLGLQQHDSQELLSFLLDGLH 1029
+F G QQ DSQELL+FLLDGLH
Sbjct: 817 RFNGFQQQDSQELLAFLLDGLH 838
>ref|NP_004496.2| ubiquitin carboxyl-terminal hydrolase 6 [Homo sapiens].
Length = 1406
Score = 149 bits (376), Expect = 4e-36
Identities = 68/138 (49%), Positives = 92/138 (66%)
Frame = +1
Query: 616 ETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTE 795
E NKD +WP NS+ + + + G GL+NLGNTCFMNS++QC+SN LT+
Sbjct: 499 EVHNKDMSWPEEMSFTANSSKIDRQKVPTEKGATGLSNLGNTCFMNSSIQCVSNTQPLTQ 558
Query: 796 YFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLG 975
YF+ R+L ELN NP+GMKG +A+ Y DLV++ WSG +S+ P + + +A +F G
Sbjct: 559 YFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKSVAPLKLRRTIAKYAPKFDG 618
Query: 976 LQQHDSQELLSFLLDGLH 1029
QQ DSQELL+FLLDGLH
Sbjct: 619 FQQQDSQELLAFLLDGLH 636
>ref|NP_001122083.1| ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens].
Length = 1118
Score = 122 bits (306), Expect = 5e-28
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 3/138 (2%)
Frame = +1
Query: 625 NKDGTWPSAQPHAMNSATEEEED--FQGQ-PGICGLTNLGNTCFMNSALQCLSNVPQLTE 795
NK +P A+ ++++ + F G P + GL NLGNTC+MNS LQCL N P L +
Sbjct: 744 NKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD 803
Query: 796 YFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLG 975
YF +N Y +++N N LG KGE+AE + ++K W+G +R I P FK +G QF G
Sbjct: 804 YFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG 863
Query: 976 LQQHDSQELLSFLLDGLH 1029
Q DSQELL FL+DGLH
Sbjct: 864 YSQQDSQELLLFLMDGLH 881
>ref|NP_001122082.1| ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens].
Length = 1118
Score = 122 bits (306), Expect = 5e-28
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 3/138 (2%)
Frame = +1
Query: 625 NKDGTWPSAQPHAMNSATEEEED--FQGQ-PGICGLTNLGNTCFMNSALQCLSNVPQLTE 795
NK +P A+ ++++ + F G P + GL NLGNTC+MNS LQCL N P L +
Sbjct: 744 NKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD 803
Query: 796 YFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLG 975
YF +N Y +++N N LG KGE+AE + ++K W+G +R I P FK +G QF G
Sbjct: 804 YFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG 863
Query: 976 LQQHDSQELLSFLLDGLH 1029
Q DSQELL FL+DGLH
Sbjct: 864 YSQQDSQELLLFLMDGLH 881
>ref|NP_005145.3| ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens].
Length = 1118
Score = 122 bits (306), Expect = 5e-28
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 3/138 (2%)
Frame = +1
Query: 625 NKDGTWPSAQPHAMNSATEEEED--FQGQ-PGICGLTNLGNTCFMNSALQCLSNVPQLTE 795
NK +P A+ ++++ + F G P + GL NLGNTC+MNS LQCL N P L +
Sbjct: 744 NKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD 803
Query: 796 YFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLG 975
YF +N Y +++N N LG KGE+AE + ++K W+G +R I P FK +G QF G
Sbjct: 804 YFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG 863
Query: 976 LQQHDSQELLSFLLDGLH 1029
Q DSQELL FL+DGLH
Sbjct: 864 YSQQDSQELLLFLMDGLH 881
>ref|NP_006668.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 4 [Homo sapiens].
Length = 1318
Score = 114 bits (286), Expect = 1e-25
Identities = 57/117 (48%), Positives = 72/117 (61%)
Frame = +1
Query: 679 EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKG 858
EEEE PG GL NLGNTCFMNS +Q LSN +L ++F + E+N+ NPLG G
Sbjct: 485 EEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGG 544
Query: 859 EIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
+A +A L++ W G H + P K V ASQF G QHD+QE ++FLLDGLH
Sbjct: 545 RLAIGFAVLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLH 601
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,384,566
Number of extensions: 1270407
Number of successful extensions: 5242
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 5191
Number of HSP's successfully gapped: 42
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003534
(1030 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663603.3| ubiquitin carboxyl-terminal hydrolase 11 [Mus m... 540 e-154
Alignment gi|NP_081880.2| ubiquitin carboxyl-terminal hydrolase 15 [Mus m... 283 2e-76
Alignment gi|NP_035808.2| ubiquitin carboxyl-terminal hydrolase 4 [Mus mu... 281 8e-76
Alignment gi|NP_001025105.1| ubiquitin specific protease 32 [Mus musculus]. 181 1e-45
Alignment gi|NP_062703.2| ubiquitin carboxyl-terminal hydrolase 8 [Mus mu... 122 5e-28
Alignment gi|NP_001161844.1| ubiquitin carboxyl-terminal hydrolase 19 iso... 115 4e-26
Alignment gi|NP_663382.2| ubiquitin carboxyl-terminal hydrolase 19 isofor... 115 4e-26
Alignment gi|NP_001161843.1| ubiquitin carboxyl-terminal hydrolase 19 iso... 115 4e-26
Alignment gi|NP_001161845.1| ubiquitin carboxyl-terminal hydrolase 19 iso... 115 4e-26
Alignment gi|NP_082080.3| ubiquitin carboxyl-terminal hydrolase 19 isofor... 115 4e-26
>ref|NP_663603.3| ubiquitin carboxyl-terminal hydrolase 11 [Mus musculus].
Length = 921
Score = 540 bits (1390), Expect = e-154
Identities = 251/310 (80%), Positives = 286/310 (92%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYVQGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGEDYVLLPAAA 279
FLVE+HWY++WE YV+GGDQD+ST PGCINNAGLFEDQ++W L++ L+EG+DYVLLPA A
Sbjct: 52 FLVEKHWYKQWEVYVKGGDQDASTFPGCINNAGLFEDQISWHLRERLLEGDDYVLLPAPA 111
Query: 280 WHYLVNWYGLEHGQPPVERKVVELPGIQKVEVYPVELLLVQHSDMDTAHTAQFSHTDSLD 459
W+Y+V+WYGL GQPP+ERKV+ELPGI+KVEVYP+ELLLVQHSDM+TA T QFS+TDS++
Sbjct: 112 WNYMVSWYGLMDGQPPIERKVIELPGIRKVEVYPLELLLVQHSDMETALTIQFSYTDSVE 171
Query: 460 LVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQVVIMETRNKDGT 639
LVL TAREQFLV PQE+TRLW KN+EGS +RLCNT +T+LDA L+TGQ+VIMETRNKDGT
Sbjct: 172 LVLQTAREQFLVEPQEDTRLWTKNSEGSLDRLCNTQITLLDACLETGQLVIMETRNKDGT 231
Query: 640 WPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYL 819
WPSAQ MN+ +E+EDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFL NRYL
Sbjct: 232 WPSAQLCGMNNIPDEDEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYL 291
Query: 820 EELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQE 999
EELNF NPLGMKGE+AEAYADLVKQ WSG+HRSIVP+VFKNKVGHFASQFLG QQHDSQE
Sbjct: 292 EELNFRNPLGMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQE 351
Query: 1000 LLSFLLDGLH 1029
LLSFLLDGLH
Sbjct: 352 LLSFLLDGLH 361
>ref|NP_081880.2| ubiquitin carboxyl-terminal hydrolase 15 [Mus musculus].
Length = 981
Score = 283 bits (724), Expect = 2e-76
Identities = 158/365 (43%), Positives = 209/365 (57%), Gaps = 55/365 (15%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYV--------QGGDQDSSTSPGCINNAGLFEDQVNWRLKKGLVEGED 255
+LV+ W+++W++YV Q GDQ+ PG I+N+GL +D LK+ L++ D
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDKYQMGDQN--VYPGPIDNSGLLKDGDAQSLKEHLIDELD 88
Query: 256 YVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQK---VEVYPVELLLVQHSDMDTAH 426
Y+LLP W+ LV+WY L GQ P+ RKVVE K VEVY EL L ++ +M+
Sbjct: 89 YILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVV 148
Query: 427 TAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQV 606
T +FS D++D + R+ F + ++E RLW K +FE L T+ DA L GQV
Sbjct: 149 TRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLNKPDSTIQDAGLYQGQV 208
Query: 607 VIMETRNKDGTWPSA-----QPHAMNSAT------------------------------- 678
+++E +N+DGTWP P A N +T
Sbjct: 209 LVIEQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNINNRNVKNSNYCLPSY 268
Query: 679 --------EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNF 834
E QPG+CGL+NLGNTCFMNSA+QCLSN P LTEYFL ++Y EELNF
Sbjct: 269 TAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNF 328
Query: 835 CNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFL 1014
NPLGM+GEIA++YA+L+KQ WSG + P FK +VG FA QF G QQ D QELL+FL
Sbjct: 329 DNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFL 388
Query: 1015 LDGLH 1029
LDGLH
Sbjct: 389 LDGLH 393
>ref|NP_035808.2| ubiquitin carboxyl-terminal hydrolase 4 [Mus musculus].
Length = 962
Score = 281 bits (718), Expect = 8e-76
Identities = 159/373 (42%), Positives = 211/373 (56%), Gaps = 63/373 (16%)
Frame = +1
Query: 100 FLVEQHWYQKWEEYVQGGDQDS------STSPGCINNAGLFEDQVNWRLKKGLVEGEDYV 261
+L++ W+++W++YV D + PG I+N+GLF D + LK+ L++ DYV
Sbjct: 35 YLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYV 94
Query: 262 LLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQ----KVEVYPVELLLVQHSDMDTAHT 429
L+PA AW+ L+NWYG GQ P+ RKVVE G+ KVEVY +EL L ++SD +
Sbjct: 95 LVPAEAWNKLLNWYGCVEGQQPIVRKVVE-HGLFVKHCKVEVYLLELKLCENSDPTNVLS 153
Query: 430 AQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQVV 609
FS D++ + R+ F + + ETRLW K ++E+L T+ DA L GQV+
Sbjct: 154 CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVL 213
Query: 610 IMETRNKDGTWP----------------------SAQPHAMNSAT--------------- 678
++E +N+DGTWP SA P+ SA+
Sbjct: 214 VIEPQNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLIANGDSTNSSGMHS 273
Query: 679 ----------------EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKN 810
+E QPG+CGL NLGNTCFMNSALQCLSN LTEYFLK+
Sbjct: 274 SGVSRGGSGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKD 333
Query: 811 RYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHD 990
Y E+N NPLGMKGEIAEAYA+L+KQ WSG + P +FK +VG FA QF G QQ D
Sbjct: 334 EYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQD 393
Query: 991 SQELLSFLLDGLH 1029
SQELL+F+LDGLH
Sbjct: 394 SQELLAFILDGLH 406
>ref|NP_001025105.1| ubiquitin specific protease 32 [Mus musculus].
Length = 1604
Score = 181 bits (458), Expect = 1e-45
Identities = 108/322 (33%), Positives = 165/322 (51%), Gaps = 37/322 (11%)
Frame = +1
Query: 175 PGCINNAGLFEDQV---------NWRLKKG--LVEGEDYVLLPAAAWHYLVNWYG--LEH 315
PG I+N L + RLK+ L+ G DY ++P W L +WYG L
Sbjct: 521 PGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGSNLAL 580
Query: 316 GQPPVERKVVELPGIQKVEVYPVELLLVQHSDMDT------------------------A 423
+P ++ ++P ++E++P LL ++ A
Sbjct: 581 PRPVIKNSKTDIP---ELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVLA 637
Query: 424 HTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQ 603
+T FS ++ + H Q L +E+ RLW+ N+E L + + ++ Q
Sbjct: 638 YTGCFSRMQTIKEI-HEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHRLEYLKIQDEQ 696
Query: 604 VVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVP 783
+++E RNKD +WP NS+ + + G GL+NLGNTCFMNS++QC+SN
Sbjct: 697 HLVIEVRNKDMSWPEEMSFIANSSKIDRHKVPTEKGATGLSNLGNTCFMNSSIQCVSNTQ 756
Query: 784 QLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFAS 963
LT+YF+ R+L ELN NP+GMKG +A+ Y DLV++ WSG +++ P + + +A
Sbjct: 757 PLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAP 816
Query: 964 QFLGLQQHDSQELLSFLLDGLH 1029
+F G QQ DSQELL+FLLDGLH
Sbjct: 817 RFNGFQQQDSQELLAFLLDGLH 838
>ref|NP_062703.2| ubiquitin carboxyl-terminal hydrolase 8 [Mus musculus].
Length = 1080
Score = 122 bits (306), Expect = 5e-28
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Frame = +1
Query: 610 IMETRNKDGTWPSAQPHAMNSATEEEED--FQGQ-PGICGLTNLGNTCFMNSALQCLSNV 780
++ NK +P A+ ++++ + F G P + GL NLGNTC+MNS LQCL N
Sbjct: 701 MVNRENKPPCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNA 760
Query: 781 PQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFA 960
P L +YF +N Y +++N N LG KGE+AE + ++K W+G +R I P FK +G
Sbjct: 761 PHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKVTIGKIN 820
Query: 961 SQFLGLQQHDSQELLSFLLDGLH 1029
QF G Q DSQELL FL+DGLH
Sbjct: 821 DQFAGSSQQDSQELLLFLMDGLH 843
>ref|NP_001161844.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 3 [Mus musculus].
Length = 1323
Score = 115 bits (289), Expect = 4e-26
Identities = 59/130 (45%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Frame = +1
Query: 655 PHAMNSATEEEEDFQGQ-----PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYL 819
PH+ S EED + + PG GL NLGNTCFMNS +Q LSN +L ++F +
Sbjct: 514 PHSPVSGDSVEEDEEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFE 573
Query: 820 EELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQE 999
E+N+ NPLG G +A +A L++ W G H++ P K V ASQF G QHD+QE
Sbjct: 574 AEINYNNPLGTGGRLAIGFAVLLRALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQE 633
Query: 1000 LLSFLLDGLH 1029
++FLLDGLH
Sbjct: 634 FMAFLLDGLH 643
>ref|NP_663382.2| ubiquitin carboxyl-terminal hydrolase 19 isoform 5 [Mus musculus].
Length = 1299
Score = 115 bits (289), Expect = 4e-26
Identities = 59/130 (45%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Frame = +1
Query: 655 PHAMNSATEEEEDFQGQ-----PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYL 819
PH+ S EED + + PG GL NLGNTCFMNS +Q LSN +L ++F +
Sbjct: 490 PHSPVSGDSVEEDEEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFE 549
Query: 820 EELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQE 999
E+N+ NPLG G +A +A L++ W G H++ P K V ASQF G QHD+QE
Sbjct: 550 AEINYNNPLGTGGRLAIGFAVLLRALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQE 609
Query: 1000 LLSFLLDGLH 1029
++FLLDGLH
Sbjct: 610 FMAFLLDGLH 619
>ref|NP_001161843.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 2 [Mus musculus].
Length = 1324
Score = 115 bits (289), Expect = 4e-26
Identities = 59/130 (45%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Frame = +1
Query: 655 PHAMNSATEEEEDFQGQ-----PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYL 819
PH+ S EED + + PG GL NLGNTCFMNS +Q LSN +L ++F +
Sbjct: 515 PHSPVSGDSVEEDEEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFE 574
Query: 820 EELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQE 999
E+N+ NPLG G +A +A L++ W G H++ P K V ASQF G QHD+QE
Sbjct: 575 AEINYNNPLGTGGRLAIGFAVLLRALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQE 634
Query: 1000 LLSFLLDGLH 1029
++FLLDGLH
Sbjct: 635 FMAFLLDGLH 644
>ref|NP_001161845.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 4 [Mus musculus].
Length = 1322
Score = 115 bits (289), Expect = 4e-26
Identities = 59/130 (45%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Frame = +1
Query: 655 PHAMNSATEEEEDFQGQ-----PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYL 819
PH+ S EED + + PG GL NLGNTCFMNS +Q LSN +L ++F +
Sbjct: 513 PHSPVSGDSVEEDEEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFE 572
Query: 820 EELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQE 999
E+N+ NPLG G +A +A L++ W G H++ P K V ASQF G QHD+QE
Sbjct: 573 AEINYNNPLGTGGRLAIGFAVLLRALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQE 632
Query: 1000 LLSFLLDGLH 1029
++FLLDGLH
Sbjct: 633 FMAFLLDGLH 642
>ref|NP_082080.3| ubiquitin carboxyl-terminal hydrolase 19 isoform 1 [Mus musculus].
Length = 1360
Score = 115 bits (289), Expect = 4e-26
Identities = 59/130 (45%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Frame = +1
Query: 655 PHAMNSATEEEEDFQGQ-----PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYL 819
PH+ S EED + + PG GL NLGNTCFMNS +Q LSN +L ++F +
Sbjct: 514 PHSPVSGDSVEEDEEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFE 573
Query: 820 EELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQE 999
E+N+ NPLG G +A +A L++ W G H++ P K V ASQF G QHD+QE
Sbjct: 574 AEINYNNPLGTGGRLAIGFAVLLRALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQE 633
Query: 1000 LLSFLLDGLH 1029
++FLLDGLH
Sbjct: 634 FMAFLLDGLH 643
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,710,713
Number of extensions: 1060947
Number of successful extensions: 4108
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 4076
Number of HSP's successfully gapped: 40
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003534
(1030 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230117.1| ubiquitin specific peptidase 4 (proto-oncoge... 280 7e-76
Alignment gi|XP_001925564.2| PREDICTED: ubiquitin carboxyl-terminal hydro... 221 5e-58
Alignment gi|XP_003126389.2| PREDICTED: ubiquitin carboxyl-terminal hydro... 206 1e-53
Alignment gi|XP_003131747.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin ca... 181 8e-46
Alignment gi|XP_003358481.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 159 2e-39
Alignment gi|XP_001927765.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 124 1e-28
Alignment gi|XP_003132257.2| PREDICTED: ubiquitin carboxyl-terminal hydro... 114 7e-26
Alignment gi|XP_003129987.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 95 6e-20
Alignment gi|XP_003357373.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 95 6e-20
Alignment gi|XP_001927691.1| PREDICTED: putative ubiquitin carboxyl-termi... 89 5e-18
>ref|NP_001230117.1| ubiquitin specific peptidase 4 (proto-oncogene) [Sus scrofa].
Length = 963
Score = 280 bits (717), Expect = 7e-76
Identities = 162/386 (41%), Positives = 217/386 (56%), Gaps = 63/386 (16%)
Frame = +1
Query: 61 LWRSPSQDGRKCRFLVEQHWYQKWEEYVQGGDQDS------STSPGCINNAGLFEDQVNW 222
L R+ Q G + +L++ W+++W++YV D + PG I+N+GLF D +
Sbjct: 23 LMRTTLQRGAQW-YLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQ 81
Query: 223 RLKKGLVEGEDYVLLPAAAWHYLVNWYGLEHGQPPVERKVVELPGIQ----KVEVYPVEL 390
LK+ L++ DYVL+P AW+ L+NWYG GQ P+ RKVVE G+ KVEVY +EL
Sbjct: 82 TLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVE-HGLFVKHCKVEVYLLEL 140
Query: 391 LLVQHSDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHV 570
L ++SD + FS D++ + R+ F + + ETRLW + ++E+L
Sbjct: 141 KLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNRYMSNTYEQLSKLDN 200
Query: 571 TVLDAALKTGQVVIMETRNKDGTWP----------------------SAQPHAMNSAT-- 678
TV DA L GQV+++E +N+DGTWP SA P++ SA+
Sbjct: 201 TVQDAGLYQGQVLVIEPQNEDGTWPRQTLQSKSSTVPSRNFTTSPKSSASPYSSVSASPI 260
Query: 679 -----------------------------EEEEDFQGQPGICGLTNLGNTCFMNSALQCL 771
+E QPG+CGL NLGNTCFMNSALQCL
Sbjct: 261 ANGDSTNTSGMHSSGVSRGGSGFSASYNCQESPSSHVQPGLCGLGNLGNTCFMNSALQCL 320
Query: 772 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 951
SN LT+YFLK+ Y E+N NPLGMKGEIAEAYA+L+KQ WSG + P +FK +VG
Sbjct: 321 SNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVG 380
Query: 952 HFASQFLGLQQHDSQELLSFLLDGLH 1029
FA QF G QQ DSQELL+FLLDGLH
Sbjct: 381 RFAPQFSGYQQQDSQELLAFLLDGLH 406
>ref|XP_001925564.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like, partial
[Sus scrofa].
Length = 865
Score = 221 bits (563), Expect = 5e-58
Identities = 120/266 (45%), Positives = 153/266 (57%), Gaps = 44/266 (16%)
Frame = +1
Query: 364 KVEVYPVELLLVQHSDMDTAHTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGS 543
KVEVY EL L ++ +M+ T +FS D++D + R+ F + ++ETRLW K +
Sbjct: 12 KVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNT 71
Query: 544 FERLCNTHVTVLDAALKTGQVVIMETRNKDGTWPSA-----QPHAMNSAT---------- 678
FE L T+ DA L GQV+++E +N+DGTWP P A N +T
Sbjct: 72 FEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLS 131
Query: 679 -----------------------------EEEEDFQGQPGICGLTNLGNTCFMNSALQCL 771
E QPG+CGL+NLGNTCFMNSA+QCL
Sbjct: 132 NNYNNINNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCL 191
Query: 772 SNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVG 951
SN P LTEYFL ++Y EELNF NPLGM+GEIA++YA+L+KQ WSG + P FK +VG
Sbjct: 192 SNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVG 251
Query: 952 HFASQFLGLQQHDSQELLSFLLDGLH 1029
FA QF G QQ D QELL+FLLDGLH
Sbjct: 252 RFAPQFSGYQQQDCQELLAFLLDGLH 277
>ref|XP_003126389.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Sus scrofa].
Length = 746
Score = 206 bits (525), Expect = 1e-53
Identities = 105/199 (52%), Positives = 133/199 (66%), Gaps = 15/199 (7%)
Frame = +1
Query: 478 REQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQVVIMETRNKDGTWPS--A 651
R+ F + ++ETRLW K +FE L T+ DA L GQV+++E +N+DGTWP +
Sbjct: 10 RKIFNIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPS 69
Query: 652 QPHAMNS-------ATEEEEDFQG------QPGICGLTNLGNTCFMNSALQCLSNVPQLT 792
P+ NS + D+ QPG+CGL+NLGNTCFMNSA+QCLSN P LT
Sbjct: 70 TPNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLT 129
Query: 793 EYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFL 972
EYFL ++Y EELNF NPLGM+GEIA++YA+L+KQ WSG + P FK +VG FA QF
Sbjct: 130 EYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFS 189
Query: 973 GLQQHDSQELLSFLLDGLH 1029
G QQ D QELL+FLLDGLH
Sbjct: 190 GYQQQDCQELLAFLLDGLH 208
>ref|XP_003131747.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase
32 [Sus scrofa].
Length = 1123
Score = 181 bits (458), Expect = 8e-46
Identities = 109/322 (33%), Positives = 164/322 (50%), Gaps = 37/322 (11%)
Frame = +1
Query: 175 PGCINNAGLFEDQV---------NWRLKKG--LVEGEDYVLLPAAAWHYLVNWYG--LEH 315
PG I+N L + RLK+ L+ G DY ++P W L +WYG L
Sbjct: 435 PGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGANLAL 494
Query: 316 GQPPVERKVVELPGIQKVEVYPVELLLVQHSDMDT------------------------A 423
+P ++ E P ++E++P LL ++ A
Sbjct: 495 PRPVIKNSKTETP---ELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVLA 551
Query: 424 HTAQFSHTDSLDLVLHTAREQFLVSPQEETRLWIKNAEGSFERLCNTHVTVLDAALKTGQ 603
+T FS ++ + H Q L +E+ RLW+ N+E L + + ++ Q
Sbjct: 552 YTGCFSRMQTIKEI-HEYLSQRLRIKEEDMRLWLYNSENYLTLLDDEDHRLEYLKIQDEQ 610
Query: 604 VVIMETRNKDGTWPSAQPHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVP 783
+++E RNKD +WP NS+ + + G GL+NLGNTCFMNS++QC+SN
Sbjct: 611 HLVIEVRNKDMSWPEEMSFIANSSKIDRHKVPTEKGATGLSNLGNTCFMNSSIQCVSNTQ 670
Query: 784 QLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFAS 963
LT+YF+ R+L ELN NP+GMKG +A+ Y DLV++ WSG +++ P + + +A
Sbjct: 671 PLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAP 730
Query: 964 QFLGLQQHDSQELLSFLLDGLH 1029
+F G QQ DSQELL+FLLDGLH
Sbjct: 731 RFNGFQQQDSQELLAFLLDGLH 752
>ref|XP_003358481.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Sus scrofa].
Length = 841
Score = 159 bits (403), Expect = 2e-39
Identities = 77/117 (65%), Positives = 87/117 (74%)
Frame = +1
Query: 679 EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKG 858
+E QPG+CGL NLGNTCFMNSALQCLSN LT+YFLK+ Y E+N NPLGMKG
Sbjct: 472 QESPSSHVQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKG 531
Query: 859 EIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
EIAEAYA+L+KQ WSG + P K +VG FA QF G QQ DSQELL+FLLDGLH
Sbjct: 532 EIAEAYAELIKQMWSGRDAHVAPRNVKTQVGRFAPQFSGYQQQDSQELLAFLLDGLH 588
>ref|XP_001927765.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Sus scrofa].
Length = 1117
Score = 124 bits (310), Expect = 1e-28
Identities = 64/138 (46%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Frame = +1
Query: 625 NKDGTWPSAQPHAMNSATEEEED--FQGQ-PGICGLTNLGNTCFMNSALQCLSNVPQLTE 795
NK ++P A+ ++++ + F G P + GL NLGNTC+MNS LQCL N P L +
Sbjct: 743 NKPTSYPKAEITRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD 802
Query: 796 YFLKNRYLEELNFCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLG 975
YF +N Y E++N N LG KGE+AE + ++K W+G +R I P FK +G QF G
Sbjct: 803 YFNRNCYQEDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG 862
Query: 976 LQQHDSQELLSFLLDGLH 1029
Q DSQELL FL+DGLH
Sbjct: 863 YSQQDSQELLLFLMDGLH 880
>ref|XP_003132257.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Sus scrofa].
Length = 1168
Score = 114 bits (286), Expect = 7e-26
Identities = 57/117 (48%), Positives = 72/117 (61%)
Frame = +1
Query: 679 EEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKG 858
EEEE PG GL NLGNTCFMNS +Q LSN +L ++F + E+N+ NPLG G
Sbjct: 440 EEEEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGG 499
Query: 859 EIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
+A +A L++ W G H + P K V ASQF G QHD+QE ++FLLDGLH
Sbjct: 500 RLAIGFAVLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLH 556
>ref|XP_003129987.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like isoform 1
[Sus scrofa].
Length = 606
Score = 95.1 bits (235), Expect = 6e-20
Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +1
Query: 709 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLV 888
G+ GL NLGNTCFMNS LQCLSN +L +Y L+ Y+ +L+ + + E +A L+
Sbjct: 266 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 323
Query: 889 KQAWSGHHRSIV-PHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
+ W+ +V P FK ++ +A +F+G Q D+QE L FLLDGLH
Sbjct: 324 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLH 371
>ref|XP_003357373.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like isoform 2
[Sus scrofa].
Length = 396
Score = 95.1 bits (235), Expect = 6e-20
Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +1
Query: 709 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAEAYADLV 888
G+ GL NLGNTCFMNS LQCLSN +L +Y L+ Y+ +L+ + + E +A L+
Sbjct: 56 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 113
Query: 889 KQAWSGHHRSIV-PHVFKNKVGHFASQFLGLQQHDSQELLSFLLDGLH 1029
+ W+ +V P FK ++ +A +F+G Q D+QE L FLLDGLH
Sbjct: 114 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLH 161
>ref|XP_001927691.1| PREDICTED: putative ubiquitin carboxyl-terminal hydrolase 50-like
[Sus scrofa].
Length = 373
Score = 88.6 bits (218), Expect = 5e-18
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +1
Query: 655 PHAMNSATEEEEDFQGQPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEEL-N 831
P +N A E + FQG + GL NLGNTC+MN+ LQCL ++ L EYFL +Y+ L
Sbjct: 27 PFPVNEADENQPHFQG---VTGLRNLGNTCYMNAILQCLCSISPLVEYFLSGKYITALQK 83
Query: 832 FCNPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGLQQHDSQELLSF 1011
C+ E+A A+A ++ W G + P +F++ +G+ + Q D+QE L +
Sbjct: 84 DCS------EVATAFAYVMTDMWLGDSECVSPEIFRSALGNLYPALMKKTQQDAQEFLIY 137
Query: 1012 LLDGLH 1029
+L+ LH
Sbjct: 138 VLNELH 143
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,391,950
Number of extensions: 817432
Number of successful extensions: 3591
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 3566
Number of HSP's successfully gapped: 26
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003534
(1030 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 359 2e-96
>Sscrofa_ChrX
|| Length = 144288218
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 759 cctgcagtgcctcagcaacgtgccgcagctcaccgagtacttcctcaaaaaccgctacct 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46752122 cctgcagtgcctcagcaacgtgccgcagctcaccgagtacttcctcaaaaaccgctacct 46752063
Query: 819 ggaggagctcaacttctgcaacccgctgggcatgaagggggagatcgccgaggcctacgc 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46752062 ggaggagctcaacttctgcaacccgctgggcatgaagggggagatcgccgaggcctacgc 46752003
Query: 879 ggacctggtgaagcaggcgtggtccggccaccaccgctccatcgtgccccacgtgttcaa 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46752002 ggacctggtgaagcaggcgtggtccggccaccaccgctccatcgtgccccacgtgttcaa 46751943
Query: 939 g 939
|
Sbjct: 46751942 g 46751942
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 457 gacctcgtcttacacaccgcgcgggagcagtttctggtgagcccccaggaggagacacgg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46753017 gacctcgtcttacacaccgcgcgggagcagtttctggtgagcccccaggaggagacacgg 46752958
Query: 517 ctgtggatcaagaacgcagagggctcctttgagaggttgtgcaacacacacgtcacagtg 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46752957 ctgtggatcaagaacgcagagggctcctttgagaggttgtgcaacacacacgtcacagtg 46752898
Query: 577 cttgacgccgctctcaagactgggcaggt 605
|||||||||||||||||||||||||||||
Sbjct: 46752897 cttgacgccgctctcaagactgggcaggt 46752869
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 207 agaccaggtaaactggcgcctcaagaagggactggtggaaggtgaggactatgtgctgct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46753777 agaccaggtaaactggcgcctcaagaagggactggtggaaggtgaggactatgtgctgct 46753718
Query: 267 cccagcggctgcttggcattacctggtcaactggtatggtctagagcatggccagcctcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46753717 cccagcggctgcttggcattacctggtcaactggtatggtctagagcatggccagcctcc 46753658
Query: 327 tgtcgaacgcaaggt 341
|||||||||||||||
Sbjct: 46753657 tgtcgaacgcaaggt 46753643
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 338 aggtcgtggagctgcccggcatccagaaggtcgaagtgtacccagtagaactgctgcttg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46753275 aggtcgtggagctgcccggcatccagaaggtcgaagtgtacccagtagaactgctgcttg 46753216
Query: 398 tccagcacagtgatatggacacagcccacactgctcaattcagccacacagattcgctcg 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46753215 tccagcacagtgatatggacacagcccacactgctcaattcagccacacagattcgctcg 46753156
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 96 caggttcctcgtggagcagcactggtaccagaagtgggaagagtacgtgcagggaggaga 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46754061 caggttcctcgtggagcagcactggtaccagaagtgggaagagtacgtgcagggaggaga 46754002
Query: 156 ccaggactccagcacctcccctggctgcatcaacaatgctgggctctttgaag 208
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46754001 ccaggactccagcacctcccctggctgcatcaacaatgctgggctctttgaag 46753949
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 666 gaacagcgccacggaggaggaggaggacttccagggccagccaggcatctgcggtctcac 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46752561 gaacagcgccacggaggaggaggaggacttccagggccagccaggcatctgcggtctcac 46752502
Query: 726 caatctgggcaacacgtgcttcatgaactcggccctgcag 765
||||||||||||||||||||||||||||||||||||||||
Sbjct: 46752501 caatctgggcaacacgtgcttcatgaactcggccctgcag 46752462
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 2 gtgaagcagaaaatggcgcctgcgaatgagcaaagtttgtgacgcgacgaggtttttgcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46760185 gtgaagcagaaaatggcgcctgcgaatgagcaaagtttgtgacgcgacgaggtttttgcc 46760126
Query: 62 tctggcggagcccttcccaggacgggagaaagtgcaggt 100
|||||||||||||||||||||||||||||||||||||||
Sbjct: 46760125 tctggcggagcccttcccaggacgggagaaagtgcaggt 46760087
Score = 147 bits (74), Expect = 1e-32
Identities = 88/90 (97%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 942 caaggtcggccacttcgcgtcccagtttctggggctac-agcagcatgactcacaggagc 1000
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 46751860 caaggtcggccacttcgcgtcccagtttctggg-ctaccagcagcatgactcacaggagc 46751802
Query: 1001 tgctgtcgttcctcctggatgggctgcacg 1030
||||||||||||||||||||||||||||||
Sbjct: 46751801 tgctgtcgttcctcctggatgggctgcacg 46751772
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 601 caggtggtcatcatggagacccgaaacaaggatggcacttggcccagcgcacagccgcac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46752750 caggtggtcatcatggagacccgaaacaaggatggcacttggcccagcgcacagccgcac 46752691
Query: 661 gccatg 666
||||||
Sbjct: 46752690 gccatg 46752685
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,233,533
Number of extensions: 127
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 9
Length of query: 1030
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1009
Effective length of database: 2,808,413,156
Effective search space: 2833688874404
Effective search space used: 2833688874404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)