Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003543
(1116 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095708.1| N6-adenosine-methyltransferase 70 kDa subuni... 464 e-131
>ref|NP_001095708.1| N6-adenosine-methyltransferase 70 kDa subunit [Bos taurus].
Length = 580
Score = 464 bits (1195), Expect = e-131
Identities = 246/293 (83%), Positives = 247/293 (84%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSPTFRSDSPVP PTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPTFRSDSPVPAAPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLSLTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTI GQKRRA
Sbjct: 121 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTIAGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTT EVAKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTAAAFTSSLASGLASSASEVAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,685,613
Number of extensions: 1019970
Number of successful extensions: 4089
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4072
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003543
(1116 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864476.1| PREDICTED: similar to methyltransferase like 3 ... 466 e-131
Alignment gi|XP_864462.1| PREDICTED: similar to methyltransferase like 3 ... 466 e-131
Alignment gi|XP_864443.1| PREDICTED: similar to methyltransferase like 3 ... 466 e-131
Alignment gi|XP_864421.1| PREDICTED: similar to methyltransferase like 3 ... 466 e-131
Alignment gi|XP_864403.1| PREDICTED: similar to methyltransferase like 3 ... 466 e-131
Alignment gi|XP_864338.1| PREDICTED: similar to methyltransferase like 3 ... 466 e-131
Alignment gi|XP_532627.2| PREDICTED: similar to methyltransferase like 3 ... 466 e-131
Alignment gi|XP_864545.1| PREDICTED: similar to methyltransferase like 3 ... 461 e-130
Alignment gi|XP_864528.1| PREDICTED: similar to methyltransferase like 3 ... 446 e-125
Alignment gi|XP_864361.1| PREDICTED: similar to methyltransferase like 3 ... 374 e-106
>ref|XP_864476.1| PREDICTED: similar to methyltransferase like 3 isoform 9 [Canis
familiaris].
Length = 593
Score = 466 bits (1200), Expect = e-131
Identities = 247/293 (84%), Positives = 248/293 (84%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSP FRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPNFRSDSPVPTVPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
>ref|XP_864462.1| PREDICTED: similar to methyltransferase like 3 isoform 8 [Canis
familiaris].
Length = 505
Score = 466 bits (1200), Expect = e-131
Identities = 247/293 (84%), Positives = 248/293 (84%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSP FRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPNFRSDSPVPTVPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
>ref|XP_864443.1| PREDICTED: similar to methyltransferase like 3 isoform 7 [Canis
familiaris].
Length = 529
Score = 466 bits (1200), Expect = e-131
Identities = 247/293 (84%), Positives = 248/293 (84%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSP FRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPNFRSDSPVPTVPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
>ref|XP_864421.1| PREDICTED: similar to methyltransferase like 3 isoform 6 [Canis
familiaris].
Length = 386
Score = 466 bits (1200), Expect = e-131
Identities = 247/293 (84%), Positives = 248/293 (84%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSP FRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPNFRSDSPVPTVPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
>ref|XP_864403.1| PREDICTED: similar to methyltransferase like 3 isoform 5 [Canis
familiaris].
Length = 327
Score = 466 bits (1200), Expect = e-131
Identities = 247/293 (84%), Positives = 248/293 (84%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSP FRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPNFRSDSPVPTVPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
>ref|XP_864338.1| PREDICTED: similar to methyltransferase like 3 isoform 2 [Canis
familiaris].
Length = 386
Score = 466 bits (1200), Expect = e-131
Identities = 247/293 (84%), Positives = 248/293 (84%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSP FRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPNFRSDSPVPTVPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
>ref|XP_532627.2| PREDICTED: similar to methyltransferase like 3 isoform 1 [Canis
familiaris].
Length = 580
Score = 466 bits (1200), Expect = e-131
Identities = 247/293 (84%), Positives = 248/293 (84%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSP FRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPNFRSDSPVPTVPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
>ref|XP_864545.1| PREDICTED: similar to methyltransferase like 3 isoform 13 [Canis
familiaris].
Length = 582
Score = 461 bits (1187), Expect = e-130
Identities = 247/295 (83%), Positives = 248/295 (84%), Gaps = 2/295 (0%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHL--DLRNPEAALSPTFRSDSPVPTVPTS 400
MSDTWSSIQAHKKQLDS KQDSGHL DLRNPEAALSP FRSDSPVPTVPTS
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLAVDLRNPEAALSPNFRSDSPVPTVPTS 60
Query: 401 GGPKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVES 580
GGPKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVES
Sbjct: 61 GGPKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVES 120
Query: 581 LLQKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKR 760
LLQKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKR
Sbjct: 121 LLQKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKR 180
Query: 761 RAEQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQ 940
RAEQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE Q
Sbjct: 181 RAEQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQ 240
Query: 941 SQKVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
S+KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 SKKVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 295
>ref|XP_864528.1| PREDICTED: similar to methyltransferase like 3 isoform 12 [Canis
familiaris].
Length = 579
Score = 446 bits (1148), Expect = e-125
Identities = 241/293 (82%), Positives = 242/293 (82%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHL AALSP FRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLGEARG-AALSPNFRSDSPVPTVPTSGG 59
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 60 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 119
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 120 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 179
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 180 EQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 239
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 240 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 292
>ref|XP_864361.1| PREDICTED: similar to methyltransferase like 3 isoform 3 [Canis
familiaris].
Length = 258
Score = 374 bits (961), Expect(2) = e-106
Identities = 199/245 (81%), Positives = 201/245 (82%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSP FRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPNFRSDSPVPTVPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLASGLASSASEAAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPE 961
KV P+
Sbjct: 241 KVGPK 245
Score = 31.6 bits (70), Expect(2) = e-106
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 1026 EVGLKCKNSVTMEPRRSA 1079
+VG K KNSVTMEPRRSA
Sbjct: 241 KVGPKYKNSVTMEPRRSA 258
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,414,397
Number of extensions: 1047085
Number of successful extensions: 4390
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4359
Number of HSP's successfully gapped: 11
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003543
(1116 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062826.2| N6-adenosine-methyltransferase 70 kDa subunit [... 461 e-130
>ref|NP_062826.2| N6-adenosine-methyltransferase 70 kDa subunit [Homo sapiens].
Length = 580
Score = 461 bits (1185), Expect = e-130
Identities = 244/293 (83%), Positives = 246/293 (83%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSPTFRSDSPVPT PTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPTFRSDSPVPTAPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSI LAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSICLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGT+TGQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTVTGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV E AKEP KKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLVSGLNSSASEPAKEPAKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,715,676
Number of extensions: 1038252
Number of successful extensions: 4240
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4226
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003543
(1116 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062695.2| N6-adenosine-methyltransferase 70 kDa subunit [... 449 e-126
>ref|NP_062695.2| N6-adenosine-methyltransferase 70 kDa subunit [Mus musculus].
Length = 580
Score = 449 bits (1155), Expect = e-126
Identities = 239/293 (81%), Positives = 240/293 (81%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSPTFRSDSPVPT PTS G
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLQRRRKQDSGHLDLRNPEAALSPTFRSDSPVPTAPTSSG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPST S PELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTTSVAPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKR LLQDDAHPTLVTYADHSKLSAMMGAVAEKKG GEVAGTI GQKRRA
Sbjct: 121 QKFAAQELIEVKRGLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGLGEVAGTIAGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQD TTV E AKEP KKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDLTTVTTFASSLASGLASSASEPAKEPAKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,449,395
Number of extensions: 882739
Number of successful extensions: 3649
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3633
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003543
(1116 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128628.1| PREDICTED: n6-adenosine-methyltransferase 70... 471 e-133
>ref|XP_003128628.1| PREDICTED: n6-adenosine-methyltransferase 70 kDa subunit [Sus
scrofa].
Length = 580
Score = 471 bits (1213), Expect = e-133
Identities = 250/293 (85%), Positives = 251/293 (85%)
Frame = +2
Query: 227 MSDTWSSIQAHKKQLDSXXXXXXXXXKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 406
MSDTWSSIQAHKKQLDS KQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG
Sbjct: 1 MSDTWSSIQAHKKQLDSLRERLRRRRKQDSGHLDLRNPEAALSPTFRSDSPVPTVPTSGG 60
Query: 407 PKPSTASAVPELATDPELEKKXXXXXXXXXXXXPTDAVSIRLAISTPDAPATQDGVESLL 586
PKPSTASAVPELATDPELEKK PTDAVSIRLAISTPDAPATQDGVESLL
Sbjct: 61 PKPSTASAVPELATDPELEKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLL 120
Query: 587 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 766
QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA
Sbjct: 121 QKFAAQELIEVKRSLLQDDAHPTLVTYADHSKLSAMMGAVAEKKGPGEVAGTITGQKRRA 180
Query: 767 EQDSTTVXXXXXXXXXXXXXXXXEVAKEPTKKSRKHAASDVDLEIESLLNPPSTKETQSQ 946
EQDSTTV EVAKEPTKKSRKHAASDVDLEIESLLN STKE QS+
Sbjct: 181 EQDSTTVAAFASSLTSGLASSASEVAKEPTKKSRKHAASDVDLEIESLLNQQSTKEQQSK 240
Query: 947 KVSPEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADGP 1105
KVS EILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDAD P
Sbjct: 241 KVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRP 293
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,209,427
Number of extensions: 654768
Number of successful extensions: 2593
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2580
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003543
(1116 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 769 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 769 bits (388), Expect = 0.0
Identities = 403/408 (98%)
Strand = Plus / Plus
Query: 544 gccagatgcccctgccactcaggatggagtggaaagcctcttacagaagtttgcagctca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83014780 gccagatgcccctgccactcaggatggagtggaaagcctcttacagaagtttgcagctca 83014839
Query: 604 ggagttgattgaagtaaagcgaagtctcctacaagatgatgcacaccctactcttgtgac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83014840 ggagttgattgaagtaaagcgaagtctcctacaagatgatgcacaccctactcttgtgac 83014899
Query: 664 ctatgctgatcattccaagctctctgccatgatgggtgctgtggcagaaaagaagggccc 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83014900 ctatgctgatcattccaagctctctgccatgatgggtgctgtggcagaaaagaagggccc 83014959
Query: 724 tggggaggtagccgggaccatcacagggcagaagaggcgtgcagaacaggactcgaccac 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83014960 tggggaggtagccgggaccatcacagggcagaagaggcgtgcagaacaggactcgaccac 83015019
Query: 784 agtagctgcctttgcaagctctctgacctctggtctggcctcttcagcatcagaagtagc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83015020 agtagctgcctttgcaagctctctgacctctggtctggcctcttcagcatcagaagtagc 83015079
Query: 844 caaggagccaaccaagaaatcaaggaaacatgctgcctcagatgttgacctggagataga 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83015080 caaggagccaaccaagaaatcaaggaaacatgctgcctcagatgttgacctggagataga 83015139
Query: 904 gagccttctgaacccaccatctactaaggaaacacagagccagaaggt 951
|||||||||||||| || ||||||||||||| ||||||| |||||||
Sbjct: 83015140 gagccttctgaaccaacaatctactaaggaacaacagagcaagaaggt 83015187
Score = 646 bits (326), Expect = 0.0
Identities = 326/326 (100%)
Strand = Plus / Plus
Query: 1 ctgaaaaacatatccgccactccgctaacatttaaggtggctcctcatttcagttccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83003444 ctgaaaaacatatccgccactccgctaacatttaaggtggctcctcatttcagttccaaa 83003503
Query: 61 gcgagagcgaaacgggaaatgactttctatctggcgcatctctcaggacctccttccggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83003504 gcgagagcgaaacgggaaatgactttctatctggcgcatctctcaggacctccttccggt 83003563
Query: 121 tagccttggggagtacgcgtgagagttggaaatttcgtggagccagtgctgggaggtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83003564 tagccttggggagtacgcgtgagagttggaaatttcgtggagccagtgctgggaggtgct 83003623
Query: 181 agtcggctaccccttgttcgagacgtgtcccggctgtgggactaaaatgtcggacacgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83003624 agtcggctaccccttgttcgagacgtgtcccggctgtgggactaaaatgtcggacacgtg 83003683
Query: 241 gagctctatccaggcccacaaaaagcagctggactcgctgagggaaaggctgcggcggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83003684 gagctctatccaggcccacaaaaagcagctggactcgctgagggaaaggctgcggcggag 83003743
Query: 301 gcggaagcaggactcagggcacttgg 326
||||||||||||||||||||||||||
Sbjct: 83003744 gcggaagcaggactcagggcacttgg 83003769
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Plus
Query: 326 gatcttcggaatccagaggcagcactgtctccaaccttccgtagtgacagcccagtgcct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83014470 gatcttcggaatccagaggcagcactgtctccaaccttccgtagtgacagcccagtgcct 83014529
Query: 386 actgtacccacttctggtggccctaagcccagcacagcttcagcagttcctgagctagct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83014530 actgtacccacttctggtggccctaagcccagcacagcttcagcagttcctgagctagct 83014589
Query: 446 acagaccctgaattagagaagaagttgctacaccacctttctgatctggcgctaacattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83014590 acagaccctgaattagagaagaagttgctacaccacctttctgatctggcgctaacattg 83014649
Query: 506 cccactgatgctgtctccatccgtcttgccatctccacg 544
|||||||||||||||||||||||||||||||||||||||
Sbjct: 83014650 cccactgatgctgtctccatccgtcttgccatctccacg 83014688
Score = 305 bits (154), Expect = 3e-80
Identities = 167/170 (98%), Gaps = 1/170 (0%)
Strand = Plus / Plus
Query: 948 aggttagtccagagatcctagaactattaaatactacaacagccaaggaacaatccattg 1007
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83016231 aggttagtcaagagatcctagaactattaaatactacaacagccaaggaacaatccattg 83016290
Query: 1008 ttgaaaagtttcgttcacgaggtcgggctcaagtgcaagaattctgtgactatggaacca 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83016291 ttgaaaagtttcgttcacgaggtcgggctcaagtgcaagaattctgtgactatggaacca 83016350
Query: 1068 aggaggagtgcatgaaagccagtgatgctgacgggcc-tgtcgcaagctg 1116
|||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 83016351 aggaggagtgcatgaaagccagtgatgctgaccggccttgtcgcaagctg 83016400
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,555,635
Number of extensions: 141
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 4
Length of query: 1116
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1095
Effective length of database: 2,808,413,156
Effective search space: 3075212405820
Effective search space used: 3075212405820
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)