Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003548
(1547 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179664.1| succinate-semialdehyde dehydrogenase, mitoch... 758 0.0
Alignment gi|XP_002697610.1| PREDICTED: aldehyde dehydrogenase 5 family, ... 758 0.0
Alignment gi|XP_002690901.1| PREDICTED: aldehyde dehydrogenase 1 family, ... 216 4e-56
Alignment gi|XP_615062.5| PREDICTED: aldehyde dehydrogenase 1A2, partial ... 216 4e-56
Alignment gi|NP_001069094.1| aldehyde dehydrogenase family 8 member A1 [B... 209 4e-54
Alignment gi|NP_001096557.1| 10-formyltetrahydrofolate dehydrogenase [Bos... 209 5e-54
Alignment gi|NP_001178320.1| aldehyde dehydrogenase 1 family, member L2 [... 200 2e-51
Alignment gi|XP_002687691.1| PREDICTED: aldehyde dehydrogenase 1 family, ... 200 2e-51
Alignment gi|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 s... 197 2e-50
Alignment gi|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subf... 197 2e-50
>ref|NP_001179664.1| succinate-semialdehyde dehydrogenase, mitochondrial [Bos taurus].
Length = 526
Score = 758 bits (1958), Expect = 0.0
Identities = 389/474 (82%), Positives = 403/474 (85%)
Frame = +1
Query: 109 MATCFRLRGCLTLHLPTAPAIRGLRPRADCLVATTRPSPGPAPIRRYARGTEGLSSALLR 288
MATC RLR C HL AP R RPRADC VA PIR YARG GLSSALLR
Sbjct: 1 MATCLRLRSCAAPHLRRAPPSRICRPRADCPVA---------PIRGYARGPAGLSSALLR 51
Query: 289 TDGFVGGRWLSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKGVSAKER 468
TDGFVGG W+SAA+TFPV+DPASGAELGLVADCGV FC+W+GVSAKER
Sbjct: 52 TDGFVGGLWVSAAATFPVHDPASGAELGLVADCGVPEARAAVRAAYEAFCSWRGVSAKER 111
Query: 469 SSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDVIY 648
SS LRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGD+I
Sbjct: 112 SSLLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDIIS 171
Query: 649 TPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXX 828
TPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFS
Sbjct: 172 TPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALAL 231
Query: 829 XXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANSV 1008
GIPPGVYNVIPCSQKKA EVGEALCTDPLVSKISFTGSTATGKVLLHHAANSV
Sbjct: 232 AELANQAGIPPGVYNVIPCSQKKAKEVGEALCTDPLVSKISFTGSTATGKVLLHHAANSV 291
Query: 1009 KRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKF 1188
KRVSMELGGHAPFIVFDSANVDQAVAGAM SKFRNSGQTCVCSNRFLVQ GIHDSFVKKF
Sbjct: 292 KRVSMELGGHAPFIVFDSANVDQAVAGAMASKFRNSGQTCVCSNRFLVQSGIHDSFVKKF 351
Query: 1189 AEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKNFF 1368
AEAIKTNL VGNGF+ERTTQGPLIN KAVEKVEKHV DAISKGAT+VTGGKRH VGKNFF
Sbjct: 352 AEAIKTNLHVGNGFDERTTQGPLINAKAVEKVEKHVSDAISKGATVVTGGKRHHVGKNFF 411
Query: 1369 EPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
EPTLLSNVT++MLCS+EETFGP+APVI+F+T GLAGYFYSQD
Sbjct: 412 EPTLLSNVTRDMLCSQEETFGPVAPVIKFNTEEEAVAIANAANVGLAGYFYSQD 465
>ref|XP_002697610.1| PREDICTED: aldehyde dehydrogenase 5 family, member A1 [Bos taurus].
Length = 526
Score = 758 bits (1958), Expect = 0.0
Identities = 389/474 (82%), Positives = 403/474 (85%)
Frame = +1
Query: 109 MATCFRLRGCLTLHLPTAPAIRGLRPRADCLVATTRPSPGPAPIRRYARGTEGLSSALLR 288
MATC RLR C HL AP R RPRADC VA PIR YARG GLSSALLR
Sbjct: 1 MATCLRLRSCAAPHLRRAPPSRICRPRADCPVA---------PIRGYARGPAGLSSALLR 51
Query: 289 TDGFVGGRWLSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKGVSAKER 468
TDGFVGG W+SAA+TFPV+DPASGAELGLVADCGV FC+W+GVSAKER
Sbjct: 52 TDGFVGGLWVSAAATFPVHDPASGAELGLVADCGVPEARAAVRAAYEAFCSWRGVSAKER 111
Query: 469 SSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDVIY 648
SS LRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGD+I
Sbjct: 112 SSLLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDIIS 171
Query: 649 TPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXX 828
TPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFS
Sbjct: 172 TPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALAL 231
Query: 829 XXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANSV 1008
GIPPGVYNVIPCSQKKA EVGEALCTDPLVSKISFTGSTATGKVLLHHAANSV
Sbjct: 232 AELANQAGIPPGVYNVIPCSQKKAKEVGEALCTDPLVSKISFTGSTATGKVLLHHAANSV 291
Query: 1009 KRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKF 1188
KRVSMELGGHAPFIVFDSANVDQAVAGAM SKFRNSGQTCVCSNRFLVQ GIHDSFVKKF
Sbjct: 292 KRVSMELGGHAPFIVFDSANVDQAVAGAMASKFRNSGQTCVCSNRFLVQSGIHDSFVKKF 351
Query: 1189 AEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKNFF 1368
AEAIKTNL VGNGF+ERTTQGPLIN KAVEKVEKHV DAISKGAT+VTGGKRH VGKNFF
Sbjct: 352 AEAIKTNLHVGNGFDERTTQGPLINAKAVEKVEKHVSDAISKGATVVTGGKRHHVGKNFF 411
Query: 1369 EPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
EPTLLSNVT++MLCS+EETFGP+APVI+F+T GLAGYFYSQD
Sbjct: 412 EPTLLSNVTRDMLCSQEETFGPVAPVIKFNTEEEAVAIANAANVGLAGYFYSQD 465
>ref|XP_002690901.1| PREDICTED: aldehyde dehydrogenase 1 family, member A2 isoform 1 [Bos
taurus].
Length = 518
Score = 216 bits (550), Expect = 4e-56
Identities = 139/422 (32%), Positives = 211/422 (50%), Gaps = 11/422 (2%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFC---TWKGVSAK 462
F+ W ++ S FPVY+PA+G ++ V + + F W+ + A
Sbjct: 41 FINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDAS 100
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSEEARR 627
ER L K DL+ +++ LA + + GKP +A QG I L +++ A +
Sbjct: 101 ERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVI----KTLRYYAGWADK 156
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
++G I + +P+GV I PWNFP M K+ AL G TVV+KPAE T
Sbjct: 157 IHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQT 215
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P S G PPGV N++P A G A+ + + KI+FTGST GK++
Sbjct: 216 PLSALYMGALIKEAGFPPGVINILPGYGPTA---GAAIASHVGIDKIAFTGSTEVGKLIQ 272
Query: 988 HHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGI 1164
A S +KRV++ELGG +P I+F A++D AV A F N GQ C +R V+ I
Sbjct: 273 EAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESI 332
Query: 1165 HDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKR 1344
++ FV++ E K + VG+ F+ T QGP I++K K+ + + +++GA + GGK
Sbjct: 333 YEEFVRRSVERAKRRI-VGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKG 391
Query: 1345 HQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYS 1524
F EPT+ SNVT +M ++EE FGP+ +++F T GL ++
Sbjct: 392 LGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFT 451
Query: 1525 QD 1530
D
Sbjct: 452 ND 453
>ref|XP_615062.5| PREDICTED: aldehyde dehydrogenase 1A2, partial [Bos taurus].
Length = 479
Score = 216 bits (550), Expect = 4e-56
Identities = 139/422 (32%), Positives = 211/422 (50%), Gaps = 11/422 (2%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFC---TWKGVSAK 462
F+ W ++ S FPVY+PA+G ++ V + + F W+ + A
Sbjct: 2 FINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDAS 61
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSEEARR 627
ER L K DL+ +++ LA + + GKP +A QG I L +++ A +
Sbjct: 62 ERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVI----KTLRYYAGWADK 117
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
++G I + +P+GV I PWNFP M K+ AL G TVV+KPAE T
Sbjct: 118 IHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQT 176
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P S G PPGV N++P A G A+ + + KI+FTGST GK++
Sbjct: 177 PLSALYMGALIKEAGFPPGVINILPGYGPTA---GAAIASHVGIDKIAFTGSTEVGKLIQ 233
Query: 988 HHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGI 1164
A S +KRV++ELGG +P I+F A++D AV A F N GQ C +R V+ I
Sbjct: 234 EAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESI 293
Query: 1165 HDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKR 1344
++ FV++ E K + VG+ F+ T QGP I++K K+ + + +++GA + GGK
Sbjct: 294 YEEFVRRSVERAKRRI-VGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKG 352
Query: 1345 HQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYS 1524
F EPT+ SNVT +M ++EE FGP+ +++F T GL ++
Sbjct: 353 LGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFT 412
Query: 1525 QD 1530
D
Sbjct: 413 ND 414
>ref|NP_001069094.1| aldehyde dehydrogenase family 8 member A1 [Bos taurus].
Length = 487
Score = 209 bits (533), Expect = 4e-54
Identities = 133/424 (31%), Positives = 217/424 (51%), Gaps = 9/424 (2%)
Frame = +1
Query: 280 LLRTDGFVGGRWLSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKGVSA 459
LL + F+GG++L +S YDP++G V + G F W S
Sbjct: 7 LLMLENFIGGKFLPCSSYLDSYDPSTGEVYCHVPNSGKEEIEAAVEAARAAFPGWSSRSP 66
Query: 460 KERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQG-EILYSANFLEWFSEEARRVYG 636
+ERS L++ DL+ Q+ ++LA+ + + GK + A+ +I + + +F+
Sbjct: 67 QERSQVLQRLADLLEQSLEELAQAESKDQGKTITLARTMDIPRAVHNFRFFASSILHHTS 126
Query: 637 DVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFS 816
+ ++ PVG+AA+I+PWN P ++T K+ A+AAG TV+ KP+E T +
Sbjct: 127 ECTQMDHLGCLHYTVRAPVGIAALISPWNLPLYLLTWKIAPAIAAGNTVIAKPSELTSVT 186
Query: 817 XXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHA 996
G+PPGV N++ + + VGEAL + P V ISFTGS T + ++ +
Sbjct: 187 AWMMCRLLEKAGVPPGVVNIVFGTGPR---VGEALVSHPEVPLISFTGSQPTAERIMQLS 243
Query: 997 ANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSF 1176
A K++S+ELGG P ++F+ AN+ + + + S F N G+ C+C++R VQR I+ F
Sbjct: 244 APHCKKLSLELGGKNPAVIFEDANLAECIPTTVRSSFANQGEICLCTSRIFVQRSIYSEF 303
Query: 1177 VKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG------- 1335
+K+F EA + VG + G LI++ +EKV ++ A +GA I+ G
Sbjct: 304 LKRFVEAARM-WKVGIPSDPSADMGALISKAHLEKVRSYIKKARMEGAQILCGEGVDKLN 362
Query: 1336 -GKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAG 1512
R+Q G F PT++++V E C +EE FGP+ V+ FD+ GLA
Sbjct: 363 LPPRNQAG-YFMLPTVITDVKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANNVKYGLAA 421
Query: 1513 YFYS 1524
+S
Sbjct: 422 TVWS 425
>ref|NP_001096557.1| 10-formyltetrahydrofolate dehydrogenase [Bos taurus].
Length = 902
Score = 209 bits (532), Expect = 5e-54
Identities = 132/395 (33%), Positives = 210/395 (53%), Gaps = 9/395 (2%)
Frame = +1
Query: 298 FVGGRWLSA--ASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCT--WKGVSAKE 465
F+GG ++ A T+ +P G+ L V+ VS F W +SA++
Sbjct: 425 FIGGTFVDAEGGKTYETINPTDGSALCQVSLAQVSDVDKAVAAAKDAFENGLWGKISARD 484
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEEARRVYGDV 642
R L + +LM Q++++LA I ++G A + + S +F+ ++ G
Sbjct: 485 RGRLLYRLAELMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGST 544
Query: 643 I-YTPAKERRALVL--KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPF 813
I A+ R L + ++P+GV +I PWN+P M++ K A LAAG TVV+KPA+ TP
Sbjct: 545 IPINQARPNRNLTMTRREPIGVCGIIIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPL 604
Query: 814 SXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHH 993
+ GIP GV NV+P S VG+ L P V KI FTGST GK ++
Sbjct: 605 TALKFAELTLKAGIPKGVVNVLPGS---GSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKS 661
Query: 994 AA-NSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHD 1170
A ++VK+VS+ELGG +P ++F ++ +AV M S F N G+ C+ + R V+ IHD
Sbjct: 662 CALSNVKKVSLELGGKSPLLIFADCDLGKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHD 721
Query: 1171 SFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQ 1350
FV++ E + + +GN + T GP + ++K+ ++ + +GAT+V GGK+
Sbjct: 722 QFVRRVVEEV-GKMKIGNPLDRDTNHGPQNHLAHLQKLLEYCQRGVEEGATLVCGGKQVP 780
Query: 1351 VGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
FFEPT+ ++V M +REE+FGP+ + +F
Sbjct: 781 RPGFFFEPTVFTDVQDHMFIAREESFGPIMIISRF 815
>ref|NP_001178320.1| aldehyde dehydrogenase 1 family, member L2 [Bos taurus].
Length = 923
Score = 200 bits (509), Expect = 2e-51
Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 9/395 (2%)
Frame = +1
Query: 298 FVGGRWLSA--ASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCT--WKGVSAKE 465
F+ G++ A T+ +P G+ + V+ + F W ++A++
Sbjct: 446 FINGQFTDAEDGQTYDTINPTDGSTICKVSYASLVDVDKAVAAAKDAFENGEWGRMNARD 505
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEEARRVYGDV 642
R + + DLM + +++LA I +SG A + I S +F+ ++ G
Sbjct: 506 RGRLMYRLADLMEEKQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGST 565
Query: 643 I-YTPAKERRALVL--KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPF 813
I A+ R L K+P+GV A+I PWN+P M+ K A LAAG T+V+KPA+ TP
Sbjct: 566 IPINQARPNRNLTFTKKEPLGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPL 625
Query: 814 SXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHH 993
+ G P GV N+IP S VG+ L P + K+ FTGST GK ++
Sbjct: 626 TALKFAELSVKAGFPKGVINIIPGS---GGVVGQHLSEHPDIRKLGFTGSTLIGKQIMKS 682
Query: 994 AA-NSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHD 1170
A +++K+VS+ELGG +P I+F +D+AV M + F N G+ C+ + R V+ IHD
Sbjct: 683 CAMSNLKKVSLELGGKSPLIIFSDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEESIHD 742
Query: 1171 SFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQ 1350
FV + E IK + +G+ + T GP ++ +EK+ ++ + +GAT+V GG++ Q
Sbjct: 743 EFVTRMVEEIK-KMKIGDPLDRSTDHGPQNHKAHLEKLLQYCEAGVKEGATLVYGGRQVQ 801
Query: 1351 VGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
F EPT+ ++V M ++EE+FGP+ + +F
Sbjct: 802 RPGFFMEPTVFTDVEDHMYLAKEESFGPIMVISKF 836
>ref|XP_002687691.1| PREDICTED: aldehyde dehydrogenase 1 family, member L2 [Bos taurus].
Length = 923
Score = 200 bits (509), Expect = 2e-51
Identities = 126/395 (31%), Positives = 206/395 (52%), Gaps = 9/395 (2%)
Frame = +1
Query: 298 FVGGRWLSA--ASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCT--WKGVSAKE 465
F+ G++ A T+ +P G+ + V+ + F W ++A++
Sbjct: 446 FINGQFTDAEDGQTYDTINPTDGSTICKVSYASLVDVDKAVAAAKDAFENGEWGRMNARD 505
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEEARRVYGDV 642
R + + DLM + +++LA I +SG A + I S +F+ ++ G
Sbjct: 506 RGRLMYRLADLMEEKQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGST 565
Query: 643 I-YTPAKERRALVL--KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPF 813
I A+ R L K+P+GV A+I PWN+P M+ K A LAAG T+V+KPA+ TP
Sbjct: 566 IPINQARPNRNLTFTKKEPLGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPL 625
Query: 814 SXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHH 993
+ G P GV N+IP S VG+ L P + K+ FTGST GK ++
Sbjct: 626 TALKFAELSVKAGFPKGVINIIPGS---GGVVGQHLSEHPDIRKLGFTGSTLIGKQIMKS 682
Query: 994 AA-NSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHD 1170
A +++K+VS+ELGG +P I+F +D+AV M + F N G+ C+ + R V+ IHD
Sbjct: 683 CAMSNLKKVSLELGGKSPLIIFSDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEESIHD 742
Query: 1171 SFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQ 1350
FV + E IK + +G+ + T GP ++ +EK+ ++ + +GAT+V GG++ Q
Sbjct: 743 EFVTRMVEEIK-KMKIGDPLDRSTDHGPQNHKAHLEKLLQYCEAGVKEGATLVYGGRQVQ 801
Query: 1351 VGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
F EPT+ ++V M ++EE+FGP+ + +F
Sbjct: 802 RPGFFMEPTVFTDVEDHMYLAKEESFGPIMVISKF 836
>ref|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
taurus].
Length = 537
Score = 197 bits (501), Expect = 2e-50
Identities = 122/340 (35%), Positives = 183/340 (53%), Gaps = 2/340 (0%)
Frame = +1
Query: 442 WKGVSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSA-NFLEWFSEE 618
W+ + A R L++ DL+ +++ LA + T ++GKP A L L +F+
Sbjct: 113 WRRLDAPSRGRLLQQLADLVERDRAVLATLETMDTGKPFLHAFFIDLEGCIKTLRYFAGW 172
Query: 619 ARRVYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPA 798
A ++ G I T +P+GV ITPWNFP M+ K+ AL G TVV+KPA
Sbjct: 173 ADKIQGRTIPTDDNVV-CFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVLKPA 231
Query: 799 EDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGK 978
E TP + G PPGV N++P VG A+ + P ++KI+FTGST GK
Sbjct: 232 EQTPLTALYLGSLIKEVGFPPGVVNIVP---GFGPTVGAAISSHPHINKIAFTGSTEVGK 288
Query: 979 VLLHHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQ 1155
++ A++S +KRV++ELGG P IV A+ D AV A F N GQ C ++R V+
Sbjct: 289 LVKEAASHSNLKRVTLELGGKNPCIVCADADCDLAVECAHQGVFFNQGQCCTAASRVFVE 348
Query: 1156 RGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG 1335
++D FV++ E K VG+ F+ RT QGP I++K +K+ + +GA + G
Sbjct: 349 EQVYDEFVRRSVEYAKKR-PVGDPFDVRTEQGPQIDQKQFDKILDLIESGKKEGAKLECG 407
Query: 1336 GKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
G + F +PT+ S VT M ++EE FGP+ P+++F
Sbjct: 408 GSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKF 447
>ref|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
taurus].
Length = 537
Score = 197 bits (501), Expect = 2e-50
Identities = 122/340 (35%), Positives = 183/340 (53%), Gaps = 2/340 (0%)
Frame = +1
Query: 442 WKGVSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSA-NFLEWFSEE 618
W+ + A R L++ DL+ +++ LA + T ++GKP A L L +F+
Sbjct: 113 WRRLDAPSRGRLLQQLADLVERDRAVLATLETMDTGKPFLHAFFIDLEGCIKTLRYFAGW 172
Query: 619 ARRVYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPA 798
A ++ G I T +P+GV ITPWNFP M+ K+ AL G TVV+KPA
Sbjct: 173 ADKIQGRTIPTDDNVV-CFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVLKPA 231
Query: 799 EDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGK 978
E TP + G PPGV N++P VG A+ + P ++KI+FTGST GK
Sbjct: 232 EQTPLTALYLGSLIKEVGFPPGVVNIVP---GFGPTVGAAISSHPHINKIAFTGSTEVGK 288
Query: 979 VLLHHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQ 1155
++ A++S +KRV++ELGG P IV A+ D AV A F N GQ C ++R V+
Sbjct: 289 LVKEAASHSNLKRVTLELGGKNPCIVCADADCDLAVECAHQGVFFNQGQCCTAASRVFVE 348
Query: 1156 RGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG 1335
++D FV++ E K VG+ F+ RT QGP I++K +K+ + +GA + G
Sbjct: 349 EQVYDEFVRRSVEYAKKR-PVGDPFDVRTEQGPQIDQKQFDKILDLIESGKKEGAKLECG 407
Query: 1336 GKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
G + F +PT+ S VT M ++EE FGP+ P+++F
Sbjct: 408 GSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKF 447
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,701,079
Number of extensions: 1712664
Number of successful extensions: 6887
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 6787
Number of HSP's successfully gapped: 26
Length of query: 515
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,140,958
Effective search space: 5769510864
Effective search space used: 5769510864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003548
(1547 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545368.2| PREDICTED: similar to aldehyde dehydrogenase 5A... 616 e-176
Alignment gi|XP_863947.1| PREDICTED: similar to aldehyde dehydrogenase 1A... 217 3e-56
Alignment gi|XP_535494.2| PREDICTED: similar to aldehyde dehydrogenase 1A... 216 6e-56
Alignment gi|XP_533713.2| PREDICTED: similar to 10-formyltetrahydrofolate... 216 6e-56
Alignment gi|XP_863966.1| PREDICTED: similar to aldehyde dehydrogenase 1A... 214 2e-55
Alignment gi|XP_533415.2| PREDICTED: similar to aldehyde dehydrogenase 8A... 212 7e-55
Alignment gi|XP_863924.1| PREDICTED: similar to aldehyde dehydrogenase 1A... 211 2e-54
Alignment gi|XP_538742.2| PREDICTED: similar to aldehyde dehydrogenase 1B... 206 5e-53
Alignment gi|XP_531763.2| PREDICTED: similar to aldehyde dehydrogenase 1 ... 203 3e-52
Alignment gi|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinas... 196 5e-50
>ref|XP_545368.2| PREDICTED: similar to aldehyde dehydrogenase 5A1 precursor, isoform 2
[Canis familiaris].
Length = 482
Score = 616 bits (1588), Expect = e-176
Identities = 310/356 (87%), Positives = 323/356 (90%)
Frame = +1
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDV 642
ERSS LRKWYDLM+QNKDDLAKIITAESGKPLKEAQGEI+YSA FLEWFSEEARR+YGDV
Sbjct: 66 ERSSLLRKWYDLMMQNKDDLAKIITAESGKPLKEAQGEIVYSALFLEWFSEEARRIYGDV 125
Query: 643 IYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXX 822
IYTPAKE+RALVLKQP+GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAE TPFS
Sbjct: 126 IYTPAKEKRALVLKQPLGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEHTPFSAL 185
Query: 823 XXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAAN 1002
GIPPGVYNVIPCS+KKA EVGEALCTDPLVSKISFTGSTATGKVLLHHAA
Sbjct: 186 ALAELANQAGIPPGVYNVIPCSRKKAKEVGEALCTDPLVSKISFTGSTATGKVLLHHAAG 245
Query: 1003 SVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVK 1182
SVKRVSMELGGHAPFIVFDSANVDQAVAGAM SKFRNSGQTCVCSNRFLVQRGIHDSFVK
Sbjct: 246 SVKRVSMELGGHAPFIVFDSANVDQAVAGAMASKFRNSGQTCVCSNRFLVQRGIHDSFVK 305
Query: 1183 KFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKN 1362
KFAEA+KTNL VGNGFEERTTQGPLI+EKAVEKVEKHV DA+SKGATIVTGGKRHQ+GKN
Sbjct: 306 KFAEAMKTNLRVGNGFEERTTQGPLIDEKAVEKVEKHVSDAVSKGATIVTGGKRHQLGKN 365
Query: 1363 FFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
FFEPTLLSNVT++MLCS EETFGPLAPVI+FDT GLAGYFYSQD
Sbjct: 366 FFEPTLLSNVTRDMLCSHEETFGPLAPVIKFDTEEEAVAIANAADVGLAGYFYSQD 421
>ref|XP_863947.1| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform 5
[Canis familiaris].
Length = 496
Score = 217 bits (552), Expect = 3e-56
Identities = 140/423 (33%), Positives = 213/423 (50%), Gaps = 12/423 (2%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFC---TWKGVSAK 462
F+ W ++ S FPVY+PA+G ++ V + + F W+ + A
Sbjct: 41 FINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDAS 100
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSEEARR 627
ER L K DL+ +++ LA + + GKP +A QG I L +++ A +
Sbjct: 101 ERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVI----KTLRYYAGWADK 156
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
++G I + +P+GV I PWNFP M K+ AL G TVV+KPAE T
Sbjct: 157 IHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQT 215
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P S G PPGV N++P A G A+ + + KI+FTGST TG L+
Sbjct: 216 PLSALYMGALIKEAGFPPGVINILPGYGPTA---GAAIASHIGIDKIAFTGSTETGLHLI 272
Query: 988 HHAA--NSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRG 1161
AA +++KRV++ELGG +P I+F A++D AV A F N GQ C +R V+
Sbjct: 273 QEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEES 332
Query: 1162 IHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGK 1341
I++ FV++ E K + VG+ F+ T QGP I++K K+ + + +++GA + GGK
Sbjct: 333 IYEEFVRRSVERAKRRI-VGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGK 391
Query: 1342 RHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFY 1521
F EPT+ SNVT +M ++EE FGP+ +++F T GL +
Sbjct: 392 GLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVF 451
Query: 1522 SQD 1530
+ D
Sbjct: 452 TND 454
>ref|XP_535494.2| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform 1
[Canis familiaris].
Length = 518
Score = 216 bits (549), Expect = 6e-56
Identities = 139/422 (32%), Positives = 211/422 (50%), Gaps = 11/422 (2%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFC---TWKGVSAK 462
F+ W ++ S FPVY+PA+G ++ V + + F W+ + A
Sbjct: 41 FINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDAS 100
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSEEARR 627
ER L K DL+ +++ LA + + GKP +A QG I L +++ A +
Sbjct: 101 ERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVI----KTLRYYAGWADK 156
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
++G I + +P+GV I PWNFP M K+ AL G TVV+KPAE T
Sbjct: 157 IHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQT 215
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P S G PPGV N++P A G A+ + + KI+FTGST GK++
Sbjct: 216 PLSALYMGALIKEAGFPPGVINILPGYGPTA---GAAIASHIGIDKIAFTGSTEVGKLIQ 272
Query: 988 HHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGI 1164
A S +KRV++ELGG +P I+F A++D AV A F N GQ C +R V+ I
Sbjct: 273 EAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESI 332
Query: 1165 HDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKR 1344
++ FV++ E K + VG+ F+ T QGP I++K K+ + + +++GA + GGK
Sbjct: 333 YEEFVRRSVERAKRRI-VGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKG 391
Query: 1345 HQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYS 1524
F EPT+ SNVT +M ++EE FGP+ +++F T GL ++
Sbjct: 392 LGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFT 451
Query: 1525 QD 1530
D
Sbjct: 452 ND 453
>ref|XP_533713.2| PREDICTED: similar to 10-formyltetrahydrofolate dehydrogenase
(10-FTHFDH) (Aldehyde dehydrogenase 1 family member L1)
[Canis familiaris].
Length = 902
Score = 216 bits (549), Expect = 6e-56
Identities = 137/397 (34%), Positives = 214/397 (53%), Gaps = 11/397 (2%)
Frame = +1
Query: 298 FVGGRWLSA--ASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCT--WKGVSAKE 465
F+GG ++ A A T+ +P G + V+ VS F W +SA++
Sbjct: 425 FIGGMFVDAEGAKTYETINPTDGNVICQVSLAQVSDVDKAVAAAKDAFENGLWGKISARD 484
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEEARRVYGDV 642
R L + DLM Q++++LA I ++G A + + S +F+ ++ G
Sbjct: 485 RGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGST 544
Query: 643 I-YTPAKERRALVL--KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPF 813
I A+ R L L K+P+GV ++ PWN+P M++ K A LAAG TVV+KPA+ TP
Sbjct: 545 IPINHARPNRNLTLTKKEPIGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPL 604
Query: 814 SXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHH 993
+ GIP GV N++P S VG+ L P V KI FTGST GK ++
Sbjct: 605 TALKFAELTLKAGIPKGVVNILPGS---GSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKS 661
Query: 994 AA-NSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHD 1170
A ++VK+VS+ELGG +P I+F ++ +AV M S F N G+ C+ + R V+ IHD
Sbjct: 662 CALSNVKKVSLELGGKSPLIIFADCDLSKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHD 721
Query: 1171 SFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQ 1350
FV+K E +K + +GN + T GP ++ ++K+ ++ + +GAT+V GG HQ
Sbjct: 722 QFVQKVVEEVK-KMKIGNPLDRDTNHGPQNHQAHLQKLVEYCQHGVEEGATLVCGG--HQ 778
Query: 1351 VGKN--FFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
V + FFEPT+ ++V M ++EE+FGP+ + +F
Sbjct: 779 VPRPGFFFEPTVFTDVEDHMFIAKEESFGPIMIISRF 815
>ref|XP_863966.1| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform 6
[Canis familiaris].
Length = 496
Score = 214 bits (544), Expect = 2e-55
Identities = 138/423 (32%), Positives = 212/423 (50%), Gaps = 12/423 (2%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFC---TWKGVSAK 462
F+ W ++ S FPVY+PA+G ++ V + + F W+ + A
Sbjct: 41 FINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDAS 100
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSEEARR 627
ER L K DL+ +++ LA + + GKP +A QG I L +++ A +
Sbjct: 101 ERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVI----KTLRYYAGWADK 156
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
++G I + +P+GV I PWNFP M K+ AL G TVV+KPAE T
Sbjct: 157 IHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQT 215
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P S G PPGV N++P A G A+ + + KI+FTGST + L+
Sbjct: 216 PLSALYMGALIKEAGFPPGVINILPGYGPTA---GAAIASHIGIDKIAFTGSTEVERELI 272
Query: 988 HHAA--NSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRG 1161
AA +++KRV++ELGG +P I+F A++D AV A F N GQ C +R V+
Sbjct: 273 QEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEES 332
Query: 1162 IHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGK 1341
I++ FV++ E K + VG+ F+ T QGP I++K K+ + + +++GA + GGK
Sbjct: 333 IYEEFVRRSVERAKRRI-VGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGK 391
Query: 1342 RHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFY 1521
F EPT+ SNVT +M ++EE FGP+ +++F T GL +
Sbjct: 392 GLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVF 451
Query: 1522 SQD 1530
+ D
Sbjct: 452 TND 454
>ref|XP_533415.2| PREDICTED: similar to aldehyde dehydrogenase 8A1 isoform 1 isoform 1
[Canis familiaris].
Length = 487
Score = 212 bits (540), Expect = 7e-55
Identities = 131/426 (30%), Positives = 217/426 (50%), Gaps = 8/426 (1%)
Frame = +1
Query: 271 SSALLRTDGFVGGRWLSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKG 450
++AL+ + F+ G+++ S YDP++G V + G F W
Sbjct: 4 TNALMTLENFINGKFVPCNSYIDSYDPSTGEVYCRVPNSGKEEIEAAVEAARAAFPGWSA 63
Query: 451 VSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQG-EILYSANFLEWFSEEARR 627
S +ERS L + DL+ Q+ ++LA+ + + GK + A+ +I + + +F+
Sbjct: 64 RSPQERSKVLYRLADLLEQSLEELAQAESRDQGKTVTLARSMDIPRAVQNVRFFASSVLH 123
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
+ ++ PVG+A +I+PWN P ++T KV A+AAG TV+ KP+E T
Sbjct: 124 HTSECTQADPAGCVHYTVRAPVGIAGLISPWNLPLYLLTWKVAPAIAAGNTVIAKPSELT 183
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
+ G+PPGV N++ + + VGEAL P V ISFTGS T + ++
Sbjct: 184 SVTAWMMCKLLEKAGVPPGVVNIVFGTGPR---VGEALVAHPEVPLISFTGSQPTAERII 240
Query: 988 HHAANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIH 1167
H +A K++S+ELGG P I+F+ AN+++ + + S F N G+ C+C++R VQR I+
Sbjct: 241 HLSAPHCKKLSLELGGKNPAIIFEDANLEECIPTTVKSSFANQGEICLCTSRIFVQRSIY 300
Query: 1168 DSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGG--- 1338
+ F++KF EA + VG + + G LI++ +EKV ++ A S+GA I+ G
Sbjct: 301 EEFLEKFVEATR-RWKVGIPSDPLASMGALISKAHLEKVRSYIKKARSEGAQILCGEGVD 359
Query: 1339 ----KRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGL 1506
G F PT+++++ E C +EE FGP+ V+ FD+ GL
Sbjct: 360 TLSLPAKNQGGYFMLPTVITHIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKYGL 419
Query: 1507 AGYFYS 1524
A +S
Sbjct: 420 AATVWS 425
>ref|XP_863924.1| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform 4
[Canis familiaris].
Length = 494
Score = 211 bits (536), Expect = 2e-54
Identities = 135/421 (32%), Positives = 209/421 (49%), Gaps = 10/421 (2%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFC---TWKGVSAK 462
F+ W ++ S FPVY+PA+G ++ V + + F W+ + A
Sbjct: 41 FINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDAS 100
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSEEARR 627
ER L K DL+ +++ LA + + GKP +A QG I L +++ A +
Sbjct: 101 ERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVI----KTLRYYAGWADK 156
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
++G I + +P+GV I PWNFP M K+ AL G TVV+KPAE T
Sbjct: 157 IHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQT 215
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P S G PPGV N++P A G A+ + + KI+FTGS+ +L
Sbjct: 216 PLSALYMGALIKEAGFPPGVINILPGYGPTA---GAAIASHIGIDKIAFTGSSPMSGSML 272
Query: 988 HHAANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIH 1167
+ ++KRV++ELGG +P I+F A++D AV A F N GQ C +R V+ I+
Sbjct: 273 DMESANLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIY 332
Query: 1168 DSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRH 1347
+ FV++ E K + VG+ F+ T QGP I++K K+ + + +++GA + GGK
Sbjct: 333 EEFVRRSVERAKRRI-VGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGL 391
Query: 1348 QVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQ 1527
F EPT+ SNVT +M ++EE FGP+ +++F T GL ++
Sbjct: 392 GRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTN 451
Query: 1528 D 1530
D
Sbjct: 452 D 452
>ref|XP_538742.2| PREDICTED: similar to aldehyde dehydrogenase 1B1 precursor [Canis
familiaris].
Length = 520
Score = 206 bits (524), Expect = 5e-53
Identities = 148/462 (32%), Positives = 220/462 (47%), Gaps = 11/462 (2%)
Frame = +1
Query: 178 LRPRADCLVATTRPSPG----PAPIRRYARGTEGLSSALLRTDGFVGGRWLSAAS--TFP 339
L PR CL T P P+PI L+ + F+ W AAS TFP
Sbjct: 8 LAPRLLCLRGRTAPYSSAAALPSPI---------LNPDIRYNQLFINNEWQDAASKKTFP 58
Query: 340 VYDPASGAELGLVADCGVSXXXXXXXXXXXXF---CTWKGVSAKERSSFLRKWYDLMIQN 510
+P +G +G VA+ + F W+ + A ER L + DL+ ++
Sbjct: 59 TVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERD 118
Query: 511 KDDLAKIITAESGKPLKEAQGEILYSA-NFLEWFSEEARRVYGDVIYTPAKERRALVLKQ 687
+ LA + T ++GKP +E+ L +F+ A + +G I E +
Sbjct: 119 RVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDG-EHFCFTRHE 177
Query: 688 PVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXXXXXXXXXGIPPGV 867
PVGV I PWNFP M K+ ALA G TVV+K AE TP S G PPGV
Sbjct: 178 PVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGV 237
Query: 868 YNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANS-VKRVSMELGGHAP 1044
NV+ A G A+ + K++FTGST G ++ A +S +KRV++ELGG +P
Sbjct: 238 VNVVTGYGPTA---GAAIARHMDIDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSP 294
Query: 1045 FIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKFAEAIKTNLCVGN 1224
+V A+++ AVA + F N GQ C +R VQ I+D F+++ E K VGN
Sbjct: 295 SVVLADADMEHAVAQCHEALFFNMGQCCCAGSRTFVQESIYDEFLERTVEKAKQRR-VGN 353
Query: 1225 GFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKNFFEPTLLSNVTQEM 1404
FE T QGP ++++ E++ ++ +GA ++ GG+R F +PT+ +V +M
Sbjct: 354 PFELDTQQGPQVDKEQFERILNYIRLGQKEGAKLLCGGERFGDRGFFIKPTVFGDVQDDM 413
Query: 1405 LCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
+REE FGP+ P+ +F GLA ++QD
Sbjct: 414 KIAREEIFGPVQPLFKFKKIEEVIERANNTRYGLAAAVFTQD 455
>ref|XP_531763.2| PREDICTED: similar to aldehyde dehydrogenase 1 family, member L2
[Canis familiaris].
Length = 923
Score = 203 bits (517), Expect = 3e-52
Identities = 128/395 (32%), Positives = 208/395 (52%), Gaps = 9/395 (2%)
Frame = +1
Query: 298 FVGGRWLSA--ASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXF--CTWKGVSAKE 465
F+ G++ A T+ +P G+ + V+ + F W ++A+E
Sbjct: 446 FINGQFTDANDGKTYDTINPTDGSTICKVSYASLVDVDKAVAAAKDAFEKGEWGRMNARE 505
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEEARRVYGDV 642
R + + DL+ +N+++LA I +SG A + I S +F+ ++ G
Sbjct: 506 RGRLMYRLADLLEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGST 565
Query: 643 I-YTPAKERRALVL--KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPF 813
I A+ R L K+P+GV A+I PWN+P M+ K A LAAG T+V+KPA+ TP
Sbjct: 566 IPINQARPNRNLTFTKKEPLGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPL 625
Query: 814 SXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHH 993
+ G P GV N+IP S A G+ L P + K+ FTGSTA GK ++
Sbjct: 626 TALKFAELSSKAGFPKGVINIIPGSGGVA---GQRLSEHPHIRKLGFTGSTAIGKQIMKS 682
Query: 994 AA-NSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHD 1170
A +++K+VS+ELGG +P I+F+ +D+AV M + F N G+ C+ + R V+ IHD
Sbjct: 683 CAVSNLKKVSLELGGKSPLIIFNDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEESIHD 742
Query: 1171 SFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQ 1350
FV K E IK + +G+ + T GP ++ +EK+ ++ + +GAT+V GG++
Sbjct: 743 EFVTKVVEEIK-KMKIGDPLDRSTDHGPQNHQAHLEKLLQYCEAGVKEGATLVYGGRQVC 801
Query: 1351 VGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
F EPT+ ++V M ++EE+FGP+ + +F
Sbjct: 802 RPGFFMEPTVFTDVEDHMYLAKEESFGPIMVISKF 836
>ref|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinase 1 [Canis
familiaris].
Length = 2787
Score = 196 bits (498), Expect = 5e-50
Identities = 154/491 (31%), Positives = 223/491 (45%), Gaps = 49/491 (9%)
Frame = +1
Query: 130 RGCLTLHLPTAPAIRGLRPRADCLVA-----------------TTRPSPGP------API 240
RG T P +RG PR A T RP P P A
Sbjct: 177 RGAQTPDAPRGSRLRGAHPRGTARQAKPGECAERRRSGGGRLRTLRPEPAPQTRAPGAGE 236
Query: 241 RRYARGTEGLS----------SALLR---------TDGFVGGRWLSAAS--TFPVYDPAS 357
RR A T L+ AL R T F+ W + S F Y+P++
Sbjct: 237 RRRAMATTNLAVENGQPDRKPPALPRPVRSLEVEFTKIFINNEWHESKSGKKFATYNPST 296
Query: 358 GAELGLVAD---CGVSXXXXXXXXXXXXFCTWKGVSAKERSSFLRKWYDLMIQNKDDLAK 528
++ V + V W+ + A R L + DL+ +++ LA
Sbjct: 297 LEKICEVEEGDKLDVDKAVEAAHAAFQRGSPWRRLDALGRGWLLHQLADLVERDRAILAT 356
Query: 529 IITAESGKPLKEAQGEILYSA-NFLEWFSEEARRVYGDVIYTPAKERRALVLKQPVGVAA 705
+ T ++GKP A L L +F+ A ++ G I T +P+GV
Sbjct: 357 LETMDTGKPFLHAFFIDLEGCIKTLRYFAGWADKIQGRTIPTDDNVV-CFTRHEPIGVCG 415
Query: 706 VITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXXXXXXXXXGIPPGVYNVIPC 885
ITPWNFP M+ K+ AL G T+VVKPAE TP + G PPGV N++P
Sbjct: 416 AITPWNFPLLMLVWKLAPALCCGNTIVVKPAEQTPLTALYLGSLIKEVGFPPGVVNIVP- 474
Query: 886 SQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANS-VKRVSMELGGHAPFIVFDS 1062
VG A+ + P +SKI+FTGST GK++ A+ S +KRV++ELGG P IV
Sbjct: 475 --GFGPTVGAAISSHPHISKIAFTGSTEVGKLVKEAASRSNLKRVTLELGGKNPCIVCAD 532
Query: 1063 ANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKFAEAIKTNLCVGNGFEERT 1242
A++D AV A F N GQ C ++R V+ I+ FV++ E K +G+ F+ RT
Sbjct: 533 ADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQIYPEFVRRSVEYAKKR-PIGDPFDIRT 591
Query: 1243 TQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKNFFEPTLLSNVTQEMLCSREE 1422
QGP I++K +K+ + +GA + GG + F +PT+ S VT M ++EE
Sbjct: 592 EQGPQIDQKQFDKILDLIESGKKEGAKLECGGSAMEDRGLFIKPTVFSEVTDTMRIAKEE 651
Query: 1423 TFGPLAPVIQF 1455
FGP+ P+++F
Sbjct: 652 IFGPVQPILKF 662
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,269,866
Number of extensions: 1772756
Number of successful extensions: 7763
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 7647
Number of HSP's successfully gapped: 31
Length of query: 515
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 408
Effective length of database: 15,307,552
Effective search space: 6245481216
Effective search space used: 6245481216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003548
(1547 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071.1| succinate-semialdehyde dehydrogenase, mitochond... 710 0.0
Alignment gi|NP_733936.1| succinate-semialdehyde dehydrogenase, mitochond... 701 0.0
Alignment gi|NP_001193826.1| retinal dehydrogenase 2 isoform 4 [Homo sapi... 215 1e-55
Alignment gi|NP_003879.2| retinal dehydrogenase 2 isoform 1 [Homo sapiens]. 215 1e-55
Alignment gi|NP_072090.1| aldehyde dehydrogenase family 8 member A1 isofo... 211 2e-54
Alignment gi|NP_036322.2| aldehyde dehydrogenase family 1 member L1 [Homo... 210 3e-54
Alignment gi|NP_001029345.2| aldehyde dehydrogenase family 1 member L2, m... 203 4e-52
Alignment gi|NP_733798.1| retinal dehydrogenase 2 isoform 3 [Homo sapiens]. 199 8e-51
Alignment gi|NP_000684.2| aldehyde dehydrogenase family 1 member A3 [Homo... 195 1e-49
Alignment gi|NP_000681.2| aldehyde dehydrogenase, mitochondrial isoform 1... 193 3e-49
>ref|NP_001071.1| succinate-semialdehyde dehydrogenase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 535
Score = 710 bits (1832), Expect = 0.0
Identities = 365/475 (76%), Positives = 391/475 (82%), Gaps = 1/475 (0%)
Frame = +1
Query: 109 MATCFRLRGCLTLHL-PTAPAIRGLRPRADCLVATTRPSPGPAPIRRYARGTEGLSSALL 285
MATC LR C L T P R LRPRA LV + P+PGPA +R YA GLS+ALL
Sbjct: 1 MATCIWLRSCGARRLGSTFPGCR-LRPRAGGLVPASGPAPGPAQLRCYAGRLAGLSAALL 59
Query: 286 RTDGFVGGRWLSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKGVSAKE 465
RTD FVGGRWL AA+TFPV DPASGA LG+VADCGV FC W+ VSAKE
Sbjct: 60 RTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCRWREVSAKE 119
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDVI 645
RSS LRKWY+LMIQNKDDLA+IITAESGKPLKEA GEILYSA FLEWFSEEARRVYGD+I
Sbjct: 120 RSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDII 179
Query: 646 YTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXX 825
+TPAK+RRALVLKQP+GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFS
Sbjct: 180 HTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALA 239
Query: 826 XXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANS 1005
GIP GVYNVIPCS+K A EVGEA+CTDPLVSKISFTGST TGK+LLHHAANS
Sbjct: 240 LAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANS 299
Query: 1006 VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKK 1185
VKRVSMELGG APFIVFDSANVDQAVAGAM SKFRN+GQTCVCSN+FLVQRGIHD+FVK
Sbjct: 300 VKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFVKA 359
Query: 1186 FAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKNF 1365
FAEA+K NL VGNGFEE TTQGPLINEKAVEKVEK V DA+SKGAT+VTGGKRHQ+GKNF
Sbjct: 360 FAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNF 419
Query: 1366 FEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
FEPTLL NVTQ+MLC+ EETFGPLAPVI+FDT GLAGYFYSQD
Sbjct: 420 FEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQD 474
>ref|NP_733936.1| succinate-semialdehyde dehydrogenase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 548
Score = 701 bits (1808), Expect = 0.0
Identities = 365/488 (74%), Positives = 391/488 (80%), Gaps = 14/488 (2%)
Frame = +1
Query: 109 MATCFRLRGCLTLHL-PTAPAIRGLRPRADCLVATTRPSPGPAPIRRYARGTEGLSSALL 285
MATC LR C L T P R LRPRA LV + P+PGPA +R YA GLS+ALL
Sbjct: 1 MATCIWLRSCGARRLGSTFPGCR-LRPRAGGLVPASGPAPGPAQLRCYAGRLAGLSAALL 59
Query: 286 RTDGFVGGRWLSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKGVSAKE 465
RTD FVGGRWL AA+TFPV DPASGA LG+VADCGV FC W+ VSAKE
Sbjct: 60 RTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCRWREVSAKE 119
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDVI 645
RSS LRKWY+LMIQNKDDLA+IITAESGKPLKEA GEILYSA FLEWFSEEARRVYGD+I
Sbjct: 120 RSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDII 179
Query: 646 YTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXX 825
+TPAK+RRALVLKQP+GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFS
Sbjct: 180 HTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALA 239
Query: 826 XXXXXXXX-------------GIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGST 966
GIP GVYNVIPCS+K A EVGEA+CTDPLVSKISFTGST
Sbjct: 240 LAEVNQGFLLDLDPLLLASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGST 299
Query: 967 ATGKVLLHHAANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRF 1146
TGK+LLHHAANSVKRVSMELGG APFIVFDSANVDQAVAGAM SKFRN+GQTCVCSN+F
Sbjct: 300 TTGKILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQF 359
Query: 1147 LVQRGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATI 1326
LVQRGIHD+FVK FAEA+K NL VGNGFEE TTQGPLINEKAVEKVEK V DA+SKGAT+
Sbjct: 360 LVQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATV 419
Query: 1327 VTGGKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGL 1506
VTGGKRHQ+GKNFFEPTLL NVTQ+MLC+ EETFGPLAPVI+FDT GL
Sbjct: 420 VTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGL 479
Query: 1507 AGYFYSQD 1530
AGYFYSQD
Sbjct: 480 AGYFYSQD 487
>ref|NP_001193826.1| retinal dehydrogenase 2 isoform 4 [Homo sapiens].
Length = 497
Score = 215 bits (547), Expect = 1e-55
Identities = 139/422 (32%), Positives = 209/422 (49%), Gaps = 11/422 (2%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFC---TWKGVSAK 462
F+ W ++ S FPVY+PA+G ++ V + + F W+ + A
Sbjct: 20 FINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDAS 79
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSEEARR 627
ER L K DL+ +++ LA + + GKP +A QG I + W A +
Sbjct: 80 ERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGW----ADK 135
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
++G I + +P+GV I PWNFP M K+ AL G TVV+KPAE T
Sbjct: 136 IHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQT 194
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P S G PPGV N++P A G A+ + + KI+FTGST GK++
Sbjct: 195 PLSALYMGALIKEAGFPPGVINILPGYGPTA---GAAIASHIGIDKIAFTGSTEVGKLIQ 251
Query: 988 HHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGI 1164
A S +KRV++ELGG +P I+F A++D AV A F N GQ C +R V+ I
Sbjct: 252 EAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESI 311
Query: 1165 HDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKR 1344
++ FV++ E K + VG+ F+ T QGP I++K K+ + + +++GA + GGK
Sbjct: 312 YEEFVRRSVERAKRRV-VGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKG 370
Query: 1345 HQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYS 1524
F EPT+ SNVT +M ++EE FGP+ +++F T GL ++
Sbjct: 371 LGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFT 430
Query: 1525 QD 1530
D
Sbjct: 431 ND 432
>ref|NP_003879.2| retinal dehydrogenase 2 isoform 1 [Homo sapiens].
Length = 518
Score = 215 bits (547), Expect = 1e-55
Identities = 139/422 (32%), Positives = 209/422 (49%), Gaps = 11/422 (2%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFC---TWKGVSAK 462
F+ W ++ S FPVY+PA+G ++ V + + F W+ + A
Sbjct: 41 FINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDAS 100
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSEEARR 627
ER L K DL+ +++ LA + + GKP +A QG I + W A +
Sbjct: 101 ERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGW----ADK 156
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
++G I + +P+GV I PWNFP M K+ AL G TVV+KPAE T
Sbjct: 157 IHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQT 215
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P S G PPGV N++P A G A+ + + KI+FTGST GK++
Sbjct: 216 PLSALYMGALIKEAGFPPGVINILPGYGPTA---GAAIASHIGIDKIAFTGSTEVGKLIQ 272
Query: 988 HHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGI 1164
A S +KRV++ELGG +P I+F A++D AV A F N GQ C +R V+ I
Sbjct: 273 EAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESI 332
Query: 1165 HDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKR 1344
++ FV++ E K + VG+ F+ T QGP I++K K+ + + +++GA + GGK
Sbjct: 333 YEEFVRRSVERAKRRV-VGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKG 391
Query: 1345 HQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYS 1524
F EPT+ SNVT +M ++EE FGP+ +++F T GL ++
Sbjct: 392 LGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFT 451
Query: 1525 QD 1530
D
Sbjct: 452 ND 453
>ref|NP_072090.1| aldehyde dehydrogenase family 8 member A1 isoform 1 [Homo sapiens].
Length = 487
Score = 211 bits (536), Expect = 2e-54
Identities = 135/429 (31%), Positives = 219/429 (51%), Gaps = 9/429 (2%)
Frame = +1
Query: 271 SSALLRTDGFVGGRWLSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKG 450
++ALL + F+ G++L +S YDP++G V + G F +W
Sbjct: 4 TNALLMLENFIDGKFLPCSSYIDSYDPSTGEVYCRVPNSGKDEIEAAVKAAREAFPSWSS 63
Query: 451 VSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQG-EILYSANFLEWFSEEARR 627
S +ERS L + DL+ Q+ ++ A+ + + GK L A+ +I S +F+ +
Sbjct: 64 RSPQERSRVLNQVADLLEQSLEEFAQAESKDQGKTLALARTMDIPRSVQNFRFFASSSLH 123
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
+ ++ PVGVA +I+PWN P ++T K+ A+AAG TV+ KP+E T
Sbjct: 124 HTSECTQMDHLGCMHYTVRAPVGVAGLISPWNLPLYLLTWKIAPAMAAGNTVIAKPSELT 183
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
+ G+PPGV N++ + + VGEAL + P V ISFTGS T + +
Sbjct: 184 SVTAWMLCKLLDKAGVPPGVVNIVFGTGPR---VGEALVSHPEVPLISFTGSQPTAERIT 240
Query: 988 HHAANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIH 1167
+A K++S+ELGG P I+F+ AN+D+ + + S F N G+ C+C++R VQ+ I+
Sbjct: 241 QLSAPHCKKLSLELGGKNPAIIFEDANLDECIPATVRSSFANQGEICLCTSRIFVQKSIY 300
Query: 1168 DSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG---- 1335
F+K+F EA + VG + + G LI++ +EKV +V A+++GA I G
Sbjct: 301 SEFLKRFVEATR-KWKVGIPSDPLVSIGALISKAHLEKVRSYVKRALAEGAQIWCGEGVD 359
Query: 1336 ----GKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXG 1503
R+Q G F PT+++++ E C EE FGP+ V+ FD+ G
Sbjct: 360 KLSLPARNQAG-YFMLPTVITDIKDESCCMTEEIFGPVTCVVPFDSEEEVIERANNVKYG 418
Query: 1504 LAGYFYSQD 1530
LA +S +
Sbjct: 419 LAATVWSSN 427
>ref|NP_036322.2| aldehyde dehydrogenase family 1 member L1 [Homo sapiens].
Length = 902
Score = 210 bits (534), Expect = 3e-54
Identities = 134/395 (33%), Positives = 210/395 (53%), Gaps = 9/395 (2%)
Frame = +1
Query: 298 FVGGRWLSA--ASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCT--WKGVSAKE 465
F+GG ++ A A T +P G+ + V+ V+ F W +SA++
Sbjct: 425 FIGGEFVDAEGAKTSETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARD 484
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEEARRVYGDV 642
R + + DLM Q++++LA I ++G A + + S +F+ ++ G
Sbjct: 485 RGRLMYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGST 544
Query: 643 I-YTPAKERRALVL--KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPF 813
I A+ R L L K+PVGV +I PWN+P M++ K A LAAG TVV+KPA+ TP
Sbjct: 545 IPINQARPNRNLTLTRKEPVGVCGIIIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPL 604
Query: 814 SXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHH 993
+ GIP GV NV+P S VG+ L P V KI FTGST GK ++
Sbjct: 605 TALKFAELTLKAGIPKGVVNVLPGS---GSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKS 661
Query: 994 AA-NSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHD 1170
A ++VK+VS+ELGG +P I+F ++++AV M S F N G+ C+ + R V+ IHD
Sbjct: 662 CAISNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHD 721
Query: 1171 SFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQ 1350
FV++ E ++ + VGN + T GP + + K+ ++ + +GAT+V GG +
Sbjct: 722 EFVRRVVEEVR-KMKVGNPLDRDTDHGPQNHHAHLVKLMEYCQHGVKEGATLVCGGNQVP 780
Query: 1351 VGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
FFEPT+ ++V M ++EE+FGP+ + +F
Sbjct: 781 RPGFFFEPTVFTDVEDHMFIAKEESFGPVMIISRF 815
>ref|NP_001029345.2| aldehyde dehydrogenase family 1 member L2, mitochondrial precursor
[Homo sapiens].
Length = 923
Score = 203 bits (516), Expect = 4e-52
Identities = 127/395 (32%), Positives = 209/395 (52%), Gaps = 9/395 (2%)
Frame = +1
Query: 298 FVGGRWLSA--ASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCT--WKGVSAKE 465
F+ G++ A T+ +P G+ + V+ ++ F W ++A+E
Sbjct: 446 FINGQFTDADDGKTYDTINPTDGSTICKVSYASLADVDKAVAAAKDAFENGEWGRMNARE 505
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEEARRVYGDV 642
R + + DL+ +N+++LA I +SG A + I S +F+ ++ G
Sbjct: 506 RGRLMYRLADLLEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGST 565
Query: 643 I-YTPAKERRALVL--KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPF 813
I A+ R L K+P+GV A+I PWN+P M+ K A LAAG T+V+KPA+ TP
Sbjct: 566 IPINQARPNRNLTFTKKEPLGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPL 625
Query: 814 SXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHH 993
+ G P GV N+IP S A G+ L P + K+ FTGST GK ++
Sbjct: 626 TALKFAELSVKAGFPKGVINIIPGSGGIA---GQRLSEHPDIRKLGFTGSTPIGKQIMKS 682
Query: 994 -AANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHD 1170
A +++K+VS+ELGG +P I+F+ +D+AV M + F N G+ C+ + R V+ IHD
Sbjct: 683 CAVSNLKKVSLELGGKSPLIIFNDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEESIHD 742
Query: 1171 SFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQ 1350
FV + E IK + +G+ + T GP ++ +EK+ ++ + +GAT+V GG++ Q
Sbjct: 743 EFVTRVVEEIK-KMKIGDPLDRSTDHGPQNHKAHLEKLLQYCETGVKEGATLVYGGRQVQ 801
Query: 1351 VGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
F EPT+ ++V M ++EE+FGP+ + +F
Sbjct: 802 RPGFFMEPTVFTDVEDYMYLAKEESFGPIMVISKF 836
>ref|NP_733798.1| retinal dehydrogenase 2 isoform 3 [Homo sapiens].
Length = 422
Score = 199 bits (505), Expect = 8e-51
Identities = 126/366 (34%), Positives = 186/366 (50%), Gaps = 6/366 (1%)
Frame = +1
Query: 451 VSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSE 615
+ A ER L K DL+ +++ LA + + GKP +A QG I + W
Sbjct: 1 MDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGW--- 57
Query: 616 EARRVYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKP 795
A +++G I + +P+GV I PWNFP M K+ AL G TVV+KP
Sbjct: 58 -ADKIHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKP 115
Query: 796 AEDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATG 975
AE TP S G PPGV N++P A G A+ + + KI+FTGST G
Sbjct: 116 AEQTPLSALYMGALIKEAGFPPGVINILPGYGPTA---GAAIASHIGIDKIAFTGSTEVG 172
Query: 976 KVLLHHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLV 1152
K++ A S +KRV++ELGG +P I+F A++D AV A F N GQ C +R V
Sbjct: 173 KLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFV 232
Query: 1153 QRGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVT 1332
+ I++ FV++ E K + VG+ F+ T QGP I++K K+ + + +++GA +
Sbjct: 233 EESIYEEFVRRSVERAKRRV-VGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLEC 291
Query: 1333 GGKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAG 1512
GGK F EPT+ SNVT +M ++EE FGP+ +++F T GL
Sbjct: 292 GGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVA 351
Query: 1513 YFYSQD 1530
++ D
Sbjct: 352 AVFTND 357
>ref|NP_000684.2| aldehyde dehydrogenase family 1 member A3 [Homo sapiens].
Length = 512
Score = 195 bits (495), Expect = 1e-49
Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 2/340 (0%)
Frame = +1
Query: 442 WKGVSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSA-NFLEWFSEE 618
W+ + A R L + DL+ +++ LA + T ++GKP A L L +F+
Sbjct: 88 WRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHAFFIDLEGCIRTLRYFAGW 147
Query: 619 ARRVYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPA 798
A ++ G I T +P+GV ITPWNFP M+ K+ AL G T+V+KPA
Sbjct: 148 ADKIQGKTIPTDDNVV-CFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTMVLKPA 206
Query: 799 EDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGK 978
E TP + G PPGV N++P VG A+ + P ++KI+FTGST GK
Sbjct: 207 EQTPLTALYLGSLIKEAGFPPGVVNIVP---GFGPTVGAAISSHPQINKIAFTGSTEVGK 263
Query: 979 VLLHHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQ 1155
++ A+ S +KRV++ELGG P IV A++D AV A F N GQ C ++R V+
Sbjct: 264 LVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVE 323
Query: 1156 RGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG 1335
++ FV++ E K VG+ F+ +T QGP I++K +K+ + + +GA + G
Sbjct: 324 EQVYSEFVRRSVEYAKKR-PVGDPFDVKTEQGPQIDQKQFDKILELIESGKKEGAKLECG 382
Query: 1336 GKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
G + F +PT+ S VT M ++EE FGP+ P+++F
Sbjct: 383 GSAMEDKGLFIKPTVFSEVTDNMRIAKEEIFGPVQPILKF 422
>ref|NP_000681.2| aldehyde dehydrogenase, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 517
Score = 193 bits (491), Expect = 3e-49
Identities = 130/418 (31%), Positives = 206/418 (49%), Gaps = 7/418 (1%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXF---CTWKGVSAK 462
F+ W A S TFP +P++G + VA+ F W+ + A
Sbjct: 40 FINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDAS 99
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQ-GEILYSANFLEWFSEEARRVYGD 639
R L + DL+ +++ LA + T ++GKP + ++ L +++ A + +G
Sbjct: 100 HRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK 159
Query: 640 VIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSX 819
I + + +PVGV I PWNFP M K+G ALA G VV+K AE TP +
Sbjct: 160 TIPIDG-DFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTA 218
Query: 820 XXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAA 999
G PPGV N++P A G A+ + V K++FTGST G+V+ A
Sbjct: 219 LYVANLIKEAGFPPGVVNIVPGFGPTA---GAAIASHEDVDKVAFTGSTEIGRVIQVAAG 275
Query: 1000 NS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSF 1176
+S +KRV++ELGG +P I+ A++D AV A + F N GQ C +R VQ I+D F
Sbjct: 276 SSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEF 335
Query: 1177 VKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVG 1356
V++ K+ + VGN F+ +T QGP ++E +K+ ++ +GA ++ GG
Sbjct: 336 VERSVARAKSRV-VGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADR 394
Query: 1357 KNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
F +PT+ +V M ++EE FGP+ +++F T GLA +++D
Sbjct: 395 GYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKD 452
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,976,615
Number of extensions: 1725133
Number of successful extensions: 6772
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 6670
Number of HSP's successfully gapped: 39
Length of query: 515
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,770,016
Effective search space: 6026166528
Effective search space used: 6026166528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003548
(1547 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766120.1| succinate-semialdehyde dehydrogenase, mitochond... 675 0.0
Alignment gi|NP_033048.2| retinal dehydrogenase 2 [Mus musculus]. 215 7e-56
Alignment gi|NP_848828.1| aldehyde dehydrogenase family 8 member A1 [Mus ... 213 4e-55
Alignment gi|NP_081682.1| aldehyde dehydrogenase family 1 member L1 [Mus ... 211 1e-54
Alignment gi|NP_705771.2| aldehyde dehydrogenase family 1 member L2, mito... 200 2e-51
Alignment gi|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus muscul... 199 5e-51
Alignment gi|NP_038495.2| retinal dehydrogenase 1 [Mus musculus]. 197 2e-50
Alignment gi|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus ... 195 9e-50
Alignment gi|NP_033786.1| aldehyde dehydrogenase, mitochondrial precursor... 194 2e-49
Alignment gi|NP_064377.2| 4-trimethylaminobutyraldehyde dehydrogenase [Mu... 189 7e-48
>ref|NP_766120.1| succinate-semialdehyde dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 523
Score = 675 bits (1741), Expect = 0.0
Identities = 350/474 (73%), Positives = 371/474 (78%)
Frame = +1
Query: 109 MATCFRLRGCLTLHLPTAPAIRGLRPRADCLVATTRPSPGPAPIRRYARGTEGLSSALLR 288
MATCF LR P R RP P P R YA G GL + LLR
Sbjct: 1 MATCFLLRSFWAARPALPPPGR------------FRPEPAGTPRRSYASGPGGLHADLLR 48
Query: 289 TDGFVGGRWLSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKGVSAKER 468
D FVGGRWL A +TFPVYDPASGA+LG VADCGV F +WKGVS KER
Sbjct: 49 GDSFVGGRWLPAPATFPVYDPASGAKLGTVADCGVPEARAAVRAAYDAFNSWKGVSVKER 108
Query: 469 SSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDVIY 648
S LRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSA FLEWFSEEARR+YGD+IY
Sbjct: 109 SLLLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSALFLEWFSEEARRIYGDIIY 168
Query: 649 TPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXX 828
T AK++R LVLKQPVGVAA+ITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTP+S
Sbjct: 169 TSAKDKRGLVLKQPVGVAAIITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPYSALAL 228
Query: 829 XXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANSV 1008
GIP GVYNVIPCS+ KA EVGE LCTDPLVSKISFTGSTATGK+LLHHAANSV
Sbjct: 229 AQLANQAGIPAGVYNVIPCSRNKAKEVGEVLCTDPLVSKISFTGSTATGKILLHHAANSV 288
Query: 1009 KRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKF 1188
KRVSMELGG APFIVFDSANVDQAVAGAM SKFRN+GQTCVCSNRFLVQRGIHDSFV KF
Sbjct: 289 KRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNAGQTCVCSNRFLVQRGIHDSFVTKF 348
Query: 1189 AEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKNFF 1368
AEA+K +L VGNGFEE TTQGPLINEKAVEKVEK V DA++KGAT+VTGGKRHQ G NFF
Sbjct: 349 AEAMKKSLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVAKGATVVTGGKRHQSGGNFF 408
Query: 1369 EPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
EPTLLSNVT++MLC EETFGPLAPVI+FD GLAGYFYSQD
Sbjct: 409 EPTLLSNVTRDMLCITEETFGPLAPVIKFDKEEEAVAIANAAEVGLAGYFYSQD 462
>ref|NP_033048.2| retinal dehydrogenase 2 [Mus musculus].
Length = 518
Score = 215 bits (548), Expect = 7e-56
Identities = 141/422 (33%), Positives = 210/422 (49%), Gaps = 11/422 (2%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFC---TWKGVSAK 462
F+ W ++ S FPV +PA+G ++ V + F W+ + A
Sbjct: 41 FINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDAS 100
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEWFSEEARR 627
ER L K DL+ +++ LA + + GKP +A QG I L +++ A +
Sbjct: 101 ERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVI----KTLRYYAGWADK 156
Query: 628 VYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
++G I + +P+GV I PWNFP M T K+ AL G TVV+KPAE T
Sbjct: 157 IHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQT 215
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P S G PPGV N++P A G A+ + + KI+FTGST GK++
Sbjct: 216 PLSALYMGALIKEAGFPPGVVNILPGYGPTA---GAAIASHIGIDKIAFTGSTEVGKLIQ 272
Query: 988 HHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGI 1164
A S +KRV++ELGG +P I+F A++D AV A F N GQ C +R V+ I
Sbjct: 273 EAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESI 332
Query: 1165 HDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKR 1344
++ FVK+ E K + VG+ F+ T QGP I++K KV + + +++GA + GGK
Sbjct: 333 YEEFVKRSVERAKRRI-VGSPFDPTTEQGPQIDKKQYNKVLELIQSGVAEGAKLECGGKG 391
Query: 1345 HQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYS 1524
F EPT+ SNVT +M ++EE FGP+ +++F T GL ++
Sbjct: 392 LGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFT 451
Query: 1525 QD 1530
D
Sbjct: 452 ND 453
>ref|NP_848828.1| aldehyde dehydrogenase family 8 member A1 [Mus musculus].
Length = 487
Score = 213 bits (541), Expect = 4e-55
Identities = 135/426 (31%), Positives = 216/426 (50%), Gaps = 9/426 (2%)
Frame = +1
Query: 280 LLRTDGFVGGRWLSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKGVSA 459
LL + F+GG++L S YDP++G V + G F W S
Sbjct: 7 LLMLENFIGGKFLPCNSYIDSYDPSTGEVYCKVPNSGKEEIEAAVEAAREAFPAWSSRSP 66
Query: 460 KERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQG-EILYSANFLEWFSEEARRVYG 636
+ERS L + D++ Q+ ++LA+ + + GK L A+ +I S +F+
Sbjct: 67 QERSLVLNRLADVLEQSLEELAQAESKDQGKTLTLARTMDIPRSVLNFRFFASSNLHHVS 126
Query: 637 DVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFS 816
+ ++ PVG+A +I+PWN P ++T K+ A+AAG TV+ KP+E T +
Sbjct: 127 ECTQMSHLGCMHYTVRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSEMTSVT 186
Query: 817 XXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHA 996
G+PPGV N++ + + VGEAL + P V ISFTGS T + + +
Sbjct: 187 AWMFCKLLDKAGVPPGVINIVFGTGPR---VGEALVSHPEVPLISFTGSQPTAERITQLS 243
Query: 997 ANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSF 1176
A K++S+ELGG P I+F+ AN+++ + + S F N G+ C+C++R VQR I+ F
Sbjct: 244 APHCKKLSLELGGKNPAIIFEDANLEECIPATVRSSFANQGEICLCTSRIFVQRSIYSEF 303
Query: 1177 VKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG------- 1335
+K+F EA + VG + G LI++ +EKV +V+ A ++GA I+ G
Sbjct: 304 LKRFVEATR-KWKVGVPSDPSANMGALISKAHLEKVRSYVLKAQTEGARILCGEGVDQLS 362
Query: 1336 -GKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAG 1512
R+Q G F PT+++++ E C EE FGP+ V+ FD+ GLA
Sbjct: 363 LPLRNQAG-YFMLPTVITDIKDESRCMTEEIFGPVTCVVPFDSEEEVITRANSVRYGLAA 421
Query: 1513 YFYSQD 1530
+S+D
Sbjct: 422 TVWSKD 427
>ref|NP_081682.1| aldehyde dehydrogenase family 1 member L1 [Mus musculus].
Length = 902
Score = 211 bits (538), Expect = 1e-54
Identities = 133/395 (33%), Positives = 211/395 (53%), Gaps = 9/395 (2%)
Frame = +1
Query: 298 FVGGRWLSA--ASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCT--WKGVSAKE 465
F+GG ++ A A T+ +P G+ + V+ VS F W ++A++
Sbjct: 425 FIGGEFVDAEGAKTYSTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARD 484
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEEARRVYGDV 642
R L + DLM Q++++LA I ++G A + + S +F+ ++ G
Sbjct: 485 RGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGAT 544
Query: 643 I-YTPAKERRALVL--KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPF 813
I A+ R L L K+PVGV ++ PWN+P M++ K A LAAG TVV+KPA+ TP
Sbjct: 545 IPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPL 604
Query: 814 SXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHH 993
+ GIP GV N++P S VG+ L P V KI FTGST GK ++
Sbjct: 605 TALKFAELTLKAGIPKGVVNILPGS---GSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKS 661
Query: 994 AA-NSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHD 1170
A ++VK+VS+ELGG +P I+F ++++AV M S F N G+ C+ + R V+ IHD
Sbjct: 662 CALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHD 721
Query: 1171 SFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQ 1350
FV+K E + + +GN + T GP +E + K+ ++ + +GAT+V GG +
Sbjct: 722 QFVQKVVEEV-GKMKIGNPLDRDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVP 780
Query: 1351 VGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
FF+PT+ ++V M ++EE+FGP+ + +F
Sbjct: 781 RPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRF 815
>ref|NP_705771.2| aldehyde dehydrogenase family 1 member L2, mitochondrial [Mus
musculus].
Length = 923
Score = 200 bits (509), Expect = 2e-51
Identities = 124/397 (31%), Positives = 206/397 (51%), Gaps = 11/397 (2%)
Frame = +1
Query: 298 FVGGRWLSA--ASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCT--WKGVSAKE 465
F+ G+++ A T+ +P G + V+ ++ F W ++A++
Sbjct: 446 FINGQFVDAEDGETYATVNPTDGTTICRVSYASLADVDRAVAAAKDAFENGEWGRMNARD 505
Query: 466 RSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEEARRVYGDV 642
R + + DLM +N+++LA I +SG A + I S +F+ ++ G
Sbjct: 506 RGRLMYRLADLMEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGST 565
Query: 643 IYTPAKERR-----ALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDT 807
I P + R K+P+G A+I PWN+P M+ K A LAAG T+V+KPA+ T
Sbjct: 566 I--PINQARPNYNLTFTKKEPLGACAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVT 623
Query: 808 PFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLL 987
P + G P GV N+IP S A G+ L P + K+ FTGST+ GK ++
Sbjct: 624 PLTALKFAELTVKAGFPKGVINIIPGSGGVA---GQRLSQHPDIRKLGFTGSTSVGKQIM 680
Query: 988 HH-AANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGI 1164
A +++K+VS+ELGG +P I+F ++++AV M + F N G+ C+ + R V+ I
Sbjct: 681 KSCAVSNLKKVSLELGGKSPLIIFSDCDLEKAVRMGMGAVFFNKGENCIAAGRLFVEEAI 740
Query: 1165 HDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKR 1344
HD FV + E IK + +G+ + T GP + +EK+ ++ + +GAT+V GG++
Sbjct: 741 HDEFVTRVVEEIK-KMKIGDPLDRSTDHGPQNHRAHLEKLLQYCETGVQEGATLVYGGRQ 799
Query: 1345 HQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
Q F EPT+ + V M ++EE+FGP+ + +F
Sbjct: 800 VQRPGFFMEPTVFTGVEDHMYLAKEESFGPIMVISKF 836
>ref|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus musculus].
Length = 501
Score = 199 bits (506), Expect = 5e-51
Identities = 135/418 (32%), Positives = 209/418 (50%), Gaps = 7/418 (1%)
Frame = +1
Query: 298 FVGGRWLSAAST--FPVYDPASGAELGLVADCGVSXXXXXXXXXXXXF---CTWKGVSAK 462
F+ W + S+ FPV +PA+ + V + + F W+ + A
Sbjct: 24 FINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDAS 83
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQG-EILYSANFLEWFSEEARRVYGD 639
ER L K DLM +++ LA + + +GK A ++ S L++F+ A +++G
Sbjct: 84 ERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQ 143
Query: 640 VIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSX 819
I + ++P+GV I PWN P + T K+G AL+ G TVVVKPAE TP +
Sbjct: 144 TIPSDGNIF-TYTRREPIGVCGQIIPWNGPLIIFTWKLGPALSCGNTVVVKPAEQTPLTA 202
Query: 820 XXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAA 999
G PPGV N++P A G A+ + + K+SFTGST GK++ A
Sbjct: 203 LHMASLIKEAGFPPGVVNIVPGYGPTA---GGAISSHMDIDKVSFTGSTEVGKLIKEAAG 259
Query: 1000 NS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSF 1176
S +KRV++ELGG +P IVF A++D AV A F + GQ CV ++R V+ I+D F
Sbjct: 260 KSNLKRVTLELGGKSPCIVFADADLDSAVEFAHQGVFFHQGQICVAASRLFVEESIYDEF 319
Query: 1177 VKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVG 1356
V++ E K + +GN QGP I+++ K+ + +GA + GG R
Sbjct: 320 VRRSVERAKKYI-LGNPLNSGINQGPQIDKEQHNKILGLIESGKKEGAKLECGGGRWGNK 378
Query: 1357 KNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
F +PT+ SNVT EM ++EE FGP+ +++F + GLA +++D
Sbjct: 379 GFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSMDDVIKRANNTTYGLAAGVFTKD 436
>ref|NP_038495.2| retinal dehydrogenase 1 [Mus musculus].
Length = 501
Score = 197 bits (500), Expect = 2e-50
Identities = 134/418 (32%), Positives = 206/418 (49%), Gaps = 7/418 (1%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXF---CTWKGVSAK 462
F+ W ++ S FPV +PA+ + V + + F W+ + A
Sbjct: 24 FINNEWHNSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDAS 83
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQ-GEILYSANFLEWFSEEARRVYGD 639
ER L K DLM +++ LA + GK A ++ L++ + A +++G
Sbjct: 84 ERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYLSDLGGCIKALKYCAGWADKIHGQ 143
Query: 640 VIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSX 819
I + + ++P+GV I PWNFP M K+G AL+ G TVVVKPAE TP +
Sbjct: 144 TIPSDG-DIFTYTRREPIGVCGQIIPWNFPMLMFIWKIGPALSCGNTVVVKPAEQTPLTA 202
Query: 820 XXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAA 999
G PPGV N++P A G A+ + V K++FTGST GK++ A
Sbjct: 203 LHLASLIKEAGFPPGVVNIVPGYGPTA---GAAISSHMDVDKVAFTGSTQVGKLIKEAAG 259
Query: 1000 NS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSF 1176
S +KRV++ELGG +P IVF A++D AV A F + GQ CV ++R V+ ++D F
Sbjct: 260 KSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQGQCCVAASRIFVEESVYDEF 319
Query: 1177 VKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVG 1356
VK+ E K +GN QGP I+++ +K+ + +GA + GG R
Sbjct: 320 VKRSVERAK-KYVLGNPLTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNK 378
Query: 1357 KNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
F +PT+ SNVT EM ++EE FGP+ +++F + GLA +++D
Sbjct: 379 GFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIKRANNTTYGLAAGLFTKD 436
>ref|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus musculus].
Length = 512
Score = 195 bits (495), Expect = 9e-50
Identities = 121/344 (35%), Positives = 183/344 (53%), Gaps = 6/344 (1%)
Frame = +1
Query: 442 WKGVSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-----QGEILYSANFLEW 606
W+ + A R L + DL+ +++ LA + T ++GKP A +G I F W
Sbjct: 88 WRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGW 147
Query: 607 FSEEARRVYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVV 786
A ++ G I T +P+GV ITPWNFP M+ K+ AL G TVV
Sbjct: 148 ----ADKIQGRTIPTDDNVV-CFTRHEPIGVCGAITPWNFPLLMLAWKLAPALCCGNTVV 202
Query: 787 VKPAEDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGST 966
+KPAE TP + G PPGV N++P VG A+ + P ++KI+FTGST
Sbjct: 203 LKPAEQTPLTALYLASLIKEVGFPPGVVNIVP---GFGPTVGAAISSHPQINKIAFTGST 259
Query: 967 ATGKVLLHHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNR 1143
GK++ A+ S +KRV++ELGG P IV A++D AV A F N GQ C ++R
Sbjct: 260 EVGKLVREAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASR 319
Query: 1144 FLVQRGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGAT 1323
V+ ++ FV++ E K VG+ F+ +T QGP I++K +K+ + + +GA
Sbjct: 320 VFVEEQVYGEFVRRSVEFAKKR-PVGDPFDAKTEQGPQIDQKQFDKILELIESGKKEGAK 378
Query: 1324 IVTGGKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
+ GG + F +PT+ S+VT M ++EE FGP+ P+++F
Sbjct: 379 LECGGSAMEDRGLFIKPTVFSDVTDNMRIAKEEIFGPVQPILKF 422
>ref|NP_033786.1| aldehyde dehydrogenase, mitochondrial precursor [Mus musculus].
Length = 519
Score = 194 bits (493), Expect = 2e-49
Identities = 129/418 (30%), Positives = 206/418 (49%), Gaps = 7/418 (1%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXF---CTWKGVSAK 462
F+ W A S TFP +P++G + VA+ F W+ + A
Sbjct: 42 FINNEWHDAVSRKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAARAAFQLGSPWRRMDAS 101
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQ-GEILYSANFLEWFSEEARRVYGD 639
+R L + DL+ +++ LA + T ++GKP + ++ L +++ A + +G
Sbjct: 102 DRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK 161
Query: 640 VIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSX 819
I + + +PVGV I PWNFP M K+G ALA G VV+K AE TP +
Sbjct: 162 TIPIDG-DFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTA 220
Query: 820 XXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAA 999
G PPGV N++P A G A+ + V K++FTGST G ++ A
Sbjct: 221 LYVANLIKEAGFPPGVVNIVPGFGPTA---GAAIASHEGVDKVAFTGSTEVGHLIQVAAG 277
Query: 1000 NS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSF 1176
+S +KRV++ELGG +P I+ A++D AV A + F N GQ C +R VQ ++D F
Sbjct: 278 SSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQENVYDEF 337
Query: 1177 VKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVG 1356
V++ K+ + VGN F+ RT QGP ++E +K+ ++ +GA ++ GG
Sbjct: 338 VERSVARAKSRV-VGNPFDSRTEQGPQVDETQFKKILGYIKSGQQEGAKLLCGGGAAADR 396
Query: 1357 KNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
F +PT+ +V M ++EE FGP+ +++F T GLA +++D
Sbjct: 397 GYFIQPTVFGDVKDGMTIAKEEIFGPVMQILKFKTIEEVVGRANDSKYGLAAAVFTKD 454
>ref|NP_064377.2| 4-trimethylaminobutyraldehyde dehydrogenase [Mus musculus].
Length = 518
Score = 189 bits (479), Expect = 7e-48
Identities = 122/415 (29%), Positives = 199/415 (47%), Gaps = 6/415 (1%)
Frame = +1
Query: 316 LSAASTFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKGVSAKERSSFLRKWYD 495
+ A+ T ++PA+G + A G F W S ER L +
Sbjct: 47 VDASGTEKAFEPATGRVIATFACSGEKEVNLAVENAKAAFKLWSKKSGLERCQVLLEAAR 106
Query: 496 LMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDVIYTPAKERRAL 675
++ + KD++A + T +GK + EA+ ++ LE+++ A + G+ I P
Sbjct: 107 IIKERKDEIATVETINNGKSIFEARLDVDTCWQCLEYYAGLAASMAGEHIQLPGGSF-GY 165
Query: 676 VLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXXXXXXXXXGI 855
++P+GV I WN+P + K ALA G ++ KP+ TP S G
Sbjct: 166 TRREPLGVCVGIGAWNYPFQIACWKSAPALACGNAMIFKPSPFTPVSALLLAEIYTKAGA 225
Query: 856 PPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANSVKRVSMELGG 1035
PPG++NV+ + G+ LC V+KISFTGS TG ++ +A VK +++ELGG
Sbjct: 226 PPGLFNVV----QGGAATGQFLCHHREVAKISFTGSVPTGVKIMEMSAKGVKPITLELGG 281
Query: 1036 HAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKFAEAIKTNLC 1215
+P I+F N++ AV GA+++ F GQ C R VQ+ I D F+ + + + +
Sbjct: 282 KSPLIIFSDCNMENAVKGALMANFLTQGQVCCNGTRVFVQKEIADKFINEVVKQTQ-KIK 340
Query: 1216 VGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGK------NFFEPT 1377
+G+ E T GPLIN +E+V V A +GAT++ GG+ + + P
Sbjct: 341 LGDPLLEDTRMGPLINAPHLERVLGFVKLAKEQGATVLCGGEVYVPEDPKLKHGYYMTPC 400
Query: 1378 LLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD*PRS 1542
+L+N +M C +EE FGP+ ++ F T GLA +++D R+
Sbjct: 401 ILTNCRDDMTCVKEEIFGPVMSILTFGTEAEVLERANDTTFGLAAGVFTRDIQRA 455
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,512,451
Number of extensions: 1437951
Number of successful extensions: 5524
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 5451
Number of HSP's successfully gapped: 24
Length of query: 515
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 409
Effective length of database: 12,433,743
Effective search space: 5085400887
Effective search space used: 5085400887
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003548
(1547 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 m... 201 7e-52
Alignment gi|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitocho... 200 2e-51
Alignment gi|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitocho... 200 2e-51
Alignment gi|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 m... 197 1e-50
Alignment gi|XP_001924895.1| PREDICTED: 4-trimethylaminobutyraldehyde deh... 191 1e-48
Alignment gi|XP_003132963.2| PREDICTED: aldehyde dehydrogenase, mitochond... 188 8e-48
Alignment gi|NP_001038076.1| aldehyde dehydrogenase, mitochondrial precur... 188 8e-48
Alignment gi|XP_003121238.2| PREDICTED: aldehyde dehydrogenase family 8 m... 175 5e-44
Alignment gi|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochond... 169 4e-42
Alignment gi|XP_001929208.1| PREDICTED: methylmalonate-semialdehyde dehyd... 154 1e-37
>ref|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 member L2, mitochondrial
[Sus scrofa].
Length = 923
Score = 201 bits (512), Expect = 7e-52
Identities = 118/343 (34%), Positives = 191/343 (55%), Gaps = 5/343 (1%)
Frame = +1
Query: 442 WKGVSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEA-QGEILYSANFLEWFSEE 618
W ++A+ER + + DL+ +N+++LA I +SG A + I S +F+
Sbjct: 498 WGRMNARERGRLMYRLADLLEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGW 557
Query: 619 ARRVYGDVI-YTPAKERRALVL--KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVV 789
++ G I A+ R L K+P+GV A+I PWN+P M+ K A LAAG T+V+
Sbjct: 558 CDKIQGSTIPINQARPNRNLTFTKKEPIGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVL 617
Query: 790 KPAEDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTA 969
KPA+ TP + G P GV N+IP S A G+ L P + K+ FTGST
Sbjct: 618 KPAQVTPLTALKFAELSVKAGFPKGVINIIPGSGGIA---GQRLSEHPDIRKLGFTGSTP 674
Query: 970 TGKVLLHH-AANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRF 1146
GK ++ A +++K+VS+ELGG +P ++F+ +D+AV M + F N G+ C+ + R
Sbjct: 675 IGKQIMKSCAVSNLKKVSLELGGKSPLLIFNDCELDKAVRMGMGAVFFNKGENCIAAGRL 734
Query: 1147 LVQRGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATI 1326
V+ IHD FV + E IK + +G+ + T GP ++ +EK+ ++ + +GAT+
Sbjct: 735 FVEESIHDEFVTRVVEEIK-KMKIGDPLDRSTDHGPQNHKAHLEKLLQYCEAGVKEGATL 793
Query: 1327 VTGGKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
V GG++ Q F EPT+ ++V M ++EE+FGP+ + +F
Sbjct: 794 VYGGRQVQRPGFFMEPTVFTDVEDHMYLAKEESFGPIMVISKF 836
>ref|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial [Sus scrofa].
Length = 517
Score = 200 bits (509), Expect = 2e-51
Identities = 148/464 (31%), Positives = 217/464 (46%), Gaps = 8/464 (1%)
Frame = +1
Query: 163 PAIRGL-RPRADCLVATTRPSPGPAPIRRYARGTEGLSSALLRTDGFVGGRWLSAAS--T 333
P + GL RP A A PSP P RY F+ W A S T
Sbjct: 7 PRLFGLCRPVAPYSSAAALPSPILNPDIRY-------------NQLFINNEWQDAVSKKT 53
Query: 334 FPVYDPASGAELGLVADCGVSXXXXXXXXXXXXF---CTWKGVSAKERSSFLRKWYDLMI 504
F +P +G +G VA+ + F W+ + A ER L + DL+
Sbjct: 54 FQTVNPTTGEVIGHVAEGDQADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVE 113
Query: 505 QNKDDLAKIITAESGKPLKEAQGEILYSA-NFLEWFSEEARRVYGDVIYTPAKERRALVL 681
+++ LA + T ++GKP +E+ L +F+ A + +G I E
Sbjct: 114 RDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDG-EHFCFTR 172
Query: 682 KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXXXXXXXXXGIPP 861
+PVGV I PWNFP M K+ ALA G TVV+K AE TP S G PP
Sbjct: 173 HEPVGVCGQIIPWNFPLVMQAWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEVGFPP 232
Query: 862 GVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANS-VKRVSMELGGH 1038
GV N++ A G A+ V+K++FTGST G ++ A +S +KRV++ELGG
Sbjct: 233 GVVNILTGYGPTA---GTAIAHHMDVNKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGK 289
Query: 1039 APFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKFAEAIKTNLCV 1218
+P IV A++D AV + F N GQ C +R V+ I+D F+++ E K V
Sbjct: 290 SPSIVLADADMDHAVEQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKRRK-V 348
Query: 1219 GNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKNFFEPTLLSNVTQ 1398
GN FE T QGP +N++ E++ ++ +GA ++ GG+R F +PT+ V
Sbjct: 349 GNPFELDTQQGPQVNKEQFERILGYIQLGQKEGAKLLCGGERFGERGFFIKPTVFGGVQD 408
Query: 1399 EMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
+M ++EE FGP+ P+ +F GLA ++QD
Sbjct: 409 DMRIAKEEIFGPVQPLFKFKRIEEVIERANNTRYGLAAAVFTQD 452
>ref|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial-like [Sus scrofa].
Length = 517
Score = 200 bits (509), Expect = 2e-51
Identities = 148/464 (31%), Positives = 217/464 (46%), Gaps = 8/464 (1%)
Frame = +1
Query: 163 PAIRGL-RPRADCLVATTRPSPGPAPIRRYARGTEGLSSALLRTDGFVGGRWLSAAS--T 333
P + GL RP A A PSP P RY F+ W A S T
Sbjct: 7 PRLFGLCRPVAPYSSAAALPSPILNPDIRY-------------NQLFINNEWQDAVSKKT 53
Query: 334 FPVYDPASGAELGLVADCGVSXXXXXXXXXXXXF---CTWKGVSAKERSSFLRKWYDLMI 504
F +P +G +G VA+ + F W+ + A ER L + DL+
Sbjct: 54 FQTVNPTTGEVIGHVAEGDQADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVE 113
Query: 505 QNKDDLAKIITAESGKPLKEAQGEILYSA-NFLEWFSEEARRVYGDVIYTPAKERRALVL 681
+++ LA + T ++GKP +E+ L +F+ A + +G I E
Sbjct: 114 RDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDG-EHFCFTR 172
Query: 682 KQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXXXXXXXXXGIPP 861
+PVGV I PWNFP M K+ ALA G TVV+K AE TP S G PP
Sbjct: 173 HEPVGVCGQIIPWNFPLVMQAWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEVGFPP 232
Query: 862 GVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANS-VKRVSMELGGH 1038
GV N++ A G A+ V+K++FTGST G ++ A +S +KRV++ELGG
Sbjct: 233 GVVNILTGYGPTA---GTAIAHHMDVNKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGK 289
Query: 1039 APFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKFAEAIKTNLCV 1218
+P IV A++D AV + F N GQ C +R V+ I+D F+++ E K V
Sbjct: 290 SPSIVLADADMDHAVEQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKRRK-V 348
Query: 1219 GNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKNFFEPTLLSNVTQ 1398
GN FE T QGP +N++ E++ ++ +GA ++ GG+R F +PT+ V
Sbjct: 349 GNPFELDTQQGPQVNKEQFERILGYIQLGQKEGAKLLCGGERFGERGFFIKPTVFGGVQD 408
Query: 1399 EMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
+M ++EE FGP+ P+ +F GLA ++QD
Sbjct: 409 DMRIAKEEIFGPVQPLFKFKRIEEVIERANNTRYGLAAAVFTQD 452
>ref|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 member A3, partial [Sus
scrofa].
Length = 655
Score = 197 bits (501), Expect = 1e-50
Identities = 123/340 (36%), Positives = 180/340 (52%), Gaps = 2/340 (0%)
Frame = +1
Query: 442 WKGVSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSA-NFLEWFSEE 618
W+ + A R L + DL+ +++ LA + T ++GKP A L L +F+
Sbjct: 231 WRRLDALSRGRLLHQLADLVERDRTILATLETMDTGKPFLHAFFIDLEGCIKTLRYFAGW 290
Query: 619 ARRVYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPA 798
A ++ G I T +P+GV ITPWNFP M+ K+ AL G TVVVKPA
Sbjct: 291 ADKIQGKTIPTDDNVV-CFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVVKPA 349
Query: 799 EDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGK 978
E TP + G PPGV N++P VG A+ + P ++KI+FTGST GK
Sbjct: 350 EQTPLTALHLGSLIREVGFPPGVVNIVP---GFGPTVGAAISSHPQINKIAFTGSTEVGK 406
Query: 979 VLLHHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQ 1155
++ A+ S +KRV++ELGG P IV A++D AV A F N GQ C ++R V+
Sbjct: 407 LVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVE 466
Query: 1156 RGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG 1335
++ FVK+ E K VG+ F+ RT QGP I++K K+ + +GA + G
Sbjct: 467 EQVYSEFVKRSVEYAKKR-PVGDPFDVRTEQGPQIDQKQFNKILDLIESGKKEGAKLECG 525
Query: 1336 GKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQF 1455
G + F +PT+ S VT M ++EE FGP+ P+++F
Sbjct: 526 GSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKF 565
>ref|XP_001924895.1| PREDICTED: 4-trimethylaminobutyraldehyde dehydrogenase [Sus scrofa].
Length = 596
Score = 191 bits (484), Expect = 1e-48
Identities = 127/447 (28%), Positives = 215/447 (48%), Gaps = 9/447 (2%)
Frame = +1
Query: 229 PAPIRRYARGTEGLSSALLRTDGFVGGRWLS---AASTFPVYDPASGAELGLVADCGVSX 399
PAP+ + GT +S L + GG + A+ T ++PA+G + G
Sbjct: 97 PAPVAAMSTGTFIVSQPL----NYRGGARVDPVDASGTEKAFEPATGRVIATFTCSGEKE 152
Query: 400 XXXXXXXXXXXFCTWKGVSAKERSSFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEI 579
F W S ER L + ++ + K+++A + T +GK + EA+ ++
Sbjct: 153 VNLAVQDAKAAFKIWSQKSGMERCRILLEAARIIRERKEEIATMETINNGKSIFEARLDV 212
Query: 580 LYSANFLEWFSEEARRVYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGA 759
S LE+++ A + G+ I P ++P+GV I WN+P + K
Sbjct: 213 DISWQCLEYYAGLAGSMAGEHIQLPGGSF-GYTRREPLGVCVGIGAWNYPFQIACWKSAP 271
Query: 760 ALAAGCTVVVKPAEDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLV 939
ALA G ++ KP+ TP S G+PPG++NV+ + G+ LC V
Sbjct: 272 ALACGNAMIFKPSPFTPLSVLLLAEIYTEAGVPPGLFNVV----QGGATTGQLLCQHRDV 327
Query: 940 SKISFTGSTATGKVLLHHAANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSG 1119
+KISFTGS TG ++ +A +K V++ELGG +P I+F ++ AV GA+++ F G
Sbjct: 328 AKISFTGSVPTGSKIMEMSAKGIKPVTLELGGKSPLIIFSDCDMGNAVKGALMANFLTQG 387
Query: 1120 QTCVCSNRFLVQRGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVI 1299
+ C R VQ+ I D F ++ + + + +G+ E T GPLIN +E++ V
Sbjct: 388 EVCCNGTRVFVQKEILDKFTEEVVKQTQ-RIKIGDPLLEDTRMGPLINRPHLERILGFVK 446
Query: 1300 DAISKGATIVTGGKRH-----QVGKNFF-EPTLLSNVTQEMLCSREETFGPLAPVIQFDT 1461
A +GA ++ GG + ++ + ++ P +L+N +M C +EE FGP+ ++ FDT
Sbjct: 447 VAKEQGAKVLCGGDLYVPEDPKLKEGYYMRPCVLTNCRDDMTCVKEEIFGPVMSILSFDT 506
Query: 1462 XXXXXXXXXXXXXGLAGYFYSQD*PRS 1542
GLA +++D R+
Sbjct: 507 EAEVVERANDTTFGLAAGVFTRDIQRA 533
>ref|XP_003132963.2| PREDICTED: aldehyde dehydrogenase, mitochondrial-like isoform 1 [Sus
scrofa].
Length = 521
Score = 188 bits (477), Expect = 8e-48
Identities = 129/425 (30%), Positives = 202/425 (47%), Gaps = 14/425 (3%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXF---CTWKGVSAK 462
F+ W A S TFP +P++G + VA+ F W+ + A
Sbjct: 44 FINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDVDRAVEAARAAFQLGSPWRRLDAS 103
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKP--------LKEAQGEILYSANFLEWFSEE 618
+R L + DL+ +++ LA + T ++GKP L + Y A + + + +
Sbjct: 104 DRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK 163
Query: 619 ARRVYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPA 798
+ GD + +PVGV I PWNFP M K+G ALA G VV+K +
Sbjct: 164 TLPIDGDYF--------SYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVS 215
Query: 799 EDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGK 978
E TP + G PPGV N++P A G A+ + V K++FTGST G
Sbjct: 216 EQTPLTALYVANLIKEAGFPPGVVNIVPGYGPTA---GAAIASHEDVDKVAFTGSTEVGH 272
Query: 979 VLLHHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQ 1155
++ A S +KRV++ELGG +P I+ A++D AV A + F N GQ C +R VQ
Sbjct: 273 LIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQ 332
Query: 1156 RGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG 1335
I+ FV++ ++ + VGN F+ RT QGP I+E +K+ ++ +GA ++ G
Sbjct: 333 EDIYAEFVERSVARARSRV-VGNPFDSRTEQGPQIDETQFKKILGYIKSGKEEGAKLLCG 391
Query: 1336 GKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGY 1515
G F +PT+ +V M ++EE FGP+ +++F T GLA
Sbjct: 392 GGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVIGRANNSKYGLAAA 451
Query: 1516 FYSQD 1530
+++D
Sbjct: 452 VFTKD 456
>ref|NP_001038076.1| aldehyde dehydrogenase, mitochondrial precursor [Sus scrofa].
Length = 521
Score = 188 bits (477), Expect = 8e-48
Identities = 129/425 (30%), Positives = 202/425 (47%), Gaps = 14/425 (3%)
Frame = +1
Query: 298 FVGGRWLSAAS--TFPVYDPASGAELGLVADCGVSXXXXXXXXXXXXF---CTWKGVSAK 462
F+ W A S TFP +P++G + VA+ F W+ + A
Sbjct: 44 FINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDVDRAVEAARAAFQLGSPWRRLDAS 103
Query: 463 ERSSFLRKWYDLMIQNKDDLAKIITAESGKP--------LKEAQGEILYSANFLEWFSEE 618
+R L + DL+ +++ LA + T ++GKP L + Y A + + + +
Sbjct: 104 DRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK 163
Query: 619 ARRVYGDVIYTPAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPA 798
+ GD + +PVGV I PWNFP M K+G ALA G VV+K +
Sbjct: 164 TLPIDGDYF--------SYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVS 215
Query: 799 EDTPFSXXXXXXXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGK 978
E TP + G PPGV N++P A G A+ + V K++FTGST G
Sbjct: 216 EQTPLTALYVANLIKEAGFPPGVVNIVPGYGPTA---GAAIASHEDVDKVAFTGSTEVGH 272
Query: 979 VLLHHAANS-VKRVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQ 1155
++ A S +KRV++ELGG +P I+ A++D AV A + F N GQ C +R VQ
Sbjct: 273 LIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQ 332
Query: 1156 RGIHDSFVKKFAEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG 1335
I+ FV++ ++ + VGN F+ RT QGP I+E +K+ ++ +GA ++ G
Sbjct: 333 EDIYAEFVERSVARARSRV-VGNPFDSRTEQGPQIDETQFKKILGYIKSGKEEGAKLLCG 391
Query: 1336 GKRHQVGKNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGY 1515
G F +PT+ +V M ++EE FGP+ +++F T GLA
Sbjct: 392 GGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVIGRANNSKYGLAAA 451
Query: 1516 FYSQD 1530
+++D
Sbjct: 452 VFTKD 456
>ref|XP_003121238.2| PREDICTED: aldehyde dehydrogenase family 8 member A1-like [Sus
scrofa].
Length = 483
Score = 175 bits (444), Expect = 5e-44
Identities = 102/290 (35%), Positives = 161/290 (55%), Gaps = 8/290 (2%)
Frame = +1
Query: 679 LKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXXXXXXXXXGIP 858
++ PVG+A +I+PWN P ++T K+ A+AAG TV+ KP+E T + G+P
Sbjct: 137 VRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSELTSVTAWMMCKLLEKAGVP 196
Query: 859 PGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANSVKRVSMELGGH 1038
PGV N++ + +A GEAL + P V ISFTGS T + + +A K++S+ELGG
Sbjct: 197 PGVVNIVFGTGPRA---GEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGK 253
Query: 1039 APFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKFAEAIKTNLCV 1218
P I+F+ AN+++ V + S F N G+ C+C++R VQR I+ F+K+F +A + V
Sbjct: 254 NPAIIFEDANLEECVPTTVRSSFANQGEICLCTSRIFVQRSIYSEFLKRFVDATRM-WKV 312
Query: 1219 GNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTG--------GKRHQVGKNFFEP 1374
G + + G LI++ +EKV ++ A +GA I+ G R+Q G F P
Sbjct: 313 GIPSDPSASMGALISKAHLEKVRSYIKKARLEGAQILCGEGVDKLNLPPRNQ-GGYFMLP 371
Query: 1375 TLLSNVTQEMLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYS 1524
T+++++ E C +EE FGP+ V+ FD+ GLA +S
Sbjct: 372 TVITDIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKYGLAATVWS 421
>ref|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochondrial-like isoform 2 [Sus
scrofa].
Length = 474
Score = 169 bits (428), Expect = 4e-42
Identities = 100/283 (35%), Positives = 149/283 (52%), Gaps = 1/283 (0%)
Frame = +1
Query: 685 QPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXXXXXXXXXGIPPG 864
+PVGV I PWNFP M K+G ALA G VV+K +E TP + G PPG
Sbjct: 131 EPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVSEQTPLTALYVANLIKEAGFPPG 190
Query: 865 VYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANS-VKRVSMELGGHA 1041
V N++P A G A+ + V K++FTGST G ++ A S +KRV++ELGG +
Sbjct: 191 VVNIVPGYGPTA---GAAIASHEDVDKVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKS 247
Query: 1042 PFIVFDSANVDQAVAGAMVSKFRNSGQTCVCSNRFLVQRGIHDSFVKKFAEAIKTNLCVG 1221
P I+ A++D AV A + F N GQ C +R VQ I+ FV++ ++ + VG
Sbjct: 248 PNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYAEFVERSVARARSRV-VG 306
Query: 1222 NGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQVGKNFFEPTLLSNVTQE 1401
N F+ RT QGP I+E +K+ ++ +GA ++ GG F +PT+ +V
Sbjct: 307 NPFDSRTEQGPQIDETQFKKILGYIKSGKEEGAKLLCGGGAAADRGYFIQPTVFGDVQDG 366
Query: 1402 MLCSREETFGPLAPVIQFDTXXXXXXXXXXXXXGLAGYFYSQD 1530
M ++EE FGP+ +++F T GLA +++D
Sbjct: 367 MTIAKEEIFGPVMQILKFKTIEEVIGRANNSKYGLAAAVFTKD 409
>ref|XP_001929208.1| PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating],
mitochondrial [Sus scrofa].
Length = 533
Score = 154 bits (390), Expect = 1e-37
Identities = 110/395 (27%), Positives = 182/395 (46%), Gaps = 7/395 (1%)
Frame = +1
Query: 298 FVGGRWLSAAST--FPVYDPASGAELGLVADCGVSXXXXXXXXXXXXFCTWKGVSAKERS 471
F+GG+++ + S +++PA+ +G V + F W S R
Sbjct: 41 FIGGKFIESKSDKWIDIHNPATNELIGRVPQATKAEMDAAVSSCKRAFPAWADTSILSRQ 100
Query: 472 SFLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSANFLEWFSEEARRVYGDVIYT 651
L ++ L+ +N ++AK+IT E GK L +A+G++ +E + G+ + +
Sbjct: 101 QVLLRYQQLIKENLKEIAKLITLEQGKTLADAEGDVFRGLQVVEHACSVTSLMLGETMPS 160
Query: 652 PAKERRALVLKQPVGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSXXXXX 831
K+ + P+GV A I P+NFP+ + A+ G T ++KP+E P +
Sbjct: 161 ITKDMDLYSYRLPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMKPSERVPGATMLLA 220
Query: 832 XXXXXXGIPPGVYNVIPCSQKKAMEVGEALCTDPLVSKISFTGSTATGKVLLHHAANSVK 1011
G P G NVI Q +A+ +C P + ISF GS G+ + + K
Sbjct: 221 KLLQDSGAPDGTLNVIH-GQHEAVNF---ICDHPDIKAISFVGSNQAGEYIFERGSRHGK 276
Query: 1012 RVSMELGGHAPFIVFDSANVDQAVAGAMVSKFRNSGQTCVC-SNRFLVQRGIHDSFVKKF 1188
RV +G +V AN + + + + F +GQ C+ S LV G ++ +
Sbjct: 277 RVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAILV--GEAKKWLPEL 334
Query: 1189 AEAIKTNLCVGNGFEERTTQGPLINEKAVEKVEKHVIDAISKGATIVTGGKRHQV----G 1356
E K NL V G + GPLI+ +A E+V + +GA+I+ G+ +V
Sbjct: 335 VERAK-NLRVNAGDQPGADLGPLISPQAKERVCNLIDSGTKEGASILLDGRNIKVKGYEN 393
Query: 1357 KNFFEPTLLSNVTQEMLCSREETFGPLAPVIQFDT 1461
NF PT++SNV M C +EE FGP+ V++ DT
Sbjct: 394 GNFVGPTIISNVKPNMTCYKEEIFGPVLVVLETDT 428
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,585,068
Number of extensions: 1108097
Number of successful extensions: 4455
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4394
Number of HSP's successfully gapped: 20
Length of query: 515
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 412
Effective length of database: 8,779,541
Effective search space: 3617170892
Effective search space used: 3617170892
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003548
(1547 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 910 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 910 bits (459), Expect = 0.0
Identities = 462/463 (99%)
Strand = Plus / Plus
Query: 1 ttttcagcccgcgtctgccgccagccgggctcgtcaccgccgccgcccgacccctgtgct 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20501782 ttttcagccagcgtctgccgccagccgggctcgtcaccgccgccgcccgacccctgtgct 20501841
Query: 61 cgggtgcgcgctctcgcttgcgtgcttcctgccgccgccgccgggaccatggcgacctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20501842 cgggtgcgcgctctcgcttgcgtgcttcctgccgccgccgccgggaccatggcgacctgc 20501901
Query: 121 tttcggttgcggggctgcctgaccctgcacctccccactgcacctgcgatccgcggcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20501902 tttcggttgcggggctgcctgaccctgcacctccccactgcacctgcgatccgcggcctc 20501961
Query: 181 cgcccccgcgccgactgcctggtggccaccacgcggccctcgccaggcccggccccgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20501962 cgcccccgcgccgactgcctggtggccaccacgcggccctcgccaggcccggccccgatc 20502021
Query: 241 cgccgctatgcccggggcacagagggcctttcctcggcactgctgcgcaccgacggcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20502022 cgccgctatgcccggggcacagagggcctttcctcggcactgctgcgcaccgacggcttc 20502081
Query: 301 gtgggtggccgctggctctcggccgcctccaccttcccggtgtacgacccggccagcggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20502082 gtgggtggccgctggctctcggccgcctccaccttcccggtgtacgacccggccagcggc 20502141
Query: 361 gccgagctgggcttggtggccgactgcggggtgtccgaggcccgcgccgcggtgcgcgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20502142 gccgagctgggcttggtggccgactgcggggtgtccgaggcccgcgccgcggtgcgcgcc 20502201
Query: 421 gcctatgaggctttctgcacctggaagggggtctcggccaagg 463
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20502202 gcctatgaggctttctgcacctggaagggggtctcggccaagg 20502244
Score = 331 bits (167), Expect = 7e-88
Identities = 170/171 (99%)
Strand = Plus / Plus
Query: 547 ggaaaaccactgaaggaggcacagggagaaattctctattctgccaactttctggagtgg 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20509135 ggaaaaccactgaaggaggcacagggagaaattctctattctgccaactttctggagtgg 20509194
Query: 607 ttttcagaggaagcccgccgcgtttatggagatgttatctacaccccagccaaagaaagg 666
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20509195 tgttcagaggaagcccgccgcgtttatggagatgttatctacaccccagccaaagaaagg 20509254
Query: 667 cgggctctggtcctcaagcagcccgttggtgtagctgcagtcatcacccca 717
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20509255 cgggctctggtcctcaagcagcccgttggtgtagctgcagtcatcacccca 20509305
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1121 agacttgtgtttgctctaaccgtttcttggtgcaaagaggtatccatgattcctttgtga 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20517371 agacttgtgtttgctctaaccgtttcttggtgcaaagaggtatccatgattcctttgtga 20517430
Query: 1181 aaaaatttgccgaggcaattaagacaaacctgtgtgtgggtaatggatttgaagagagaa 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20517431 aaaaatttgccgaggcaattaagacaaacctgtgtgtgggtaatggatttgaagagagaa 20517490
Query: 1241 ctactcaaggcccgttaattaatgagaaagcagtagaaaaggt 1283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20517491 ctactcaaggcccgttaattaatgagaaagcagtagaaaaggt 20517533
Score = 321 bits (162), Expect = 6e-85
Identities = 168/170 (98%)
Strand = Plus / Plus
Query: 1280 aggtggagaagcatgtgattgatgccatttccaaaggggccaccattgtgacagggggga 1339
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 20521727 aggtagagaagcatgtgattgatgccatttccaaaggggccaccgttgtgacagggggga 20521786
Query: 1340 agcgacatcaagttggaaaaaatttcttcgagcccaccctgctcagcaacgtcacccagg 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20521787 agcgacatcaagttggaaaaaatttcttcgagcccaccctgctcagcaacgtcacccagg 20521846
Query: 1400 aaatgctctgctctcgggaagagacttttgggccactggcaccagttatc 1449
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20521847 aaatgctctgctctcgggaagagacttttgggccactggcaccagttatc 20521896
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 833 agcttgcaaaccaggctggaattcctccgggtgtgtacaatgttattccctgctctcaaa 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20511354 agcttgcaaaccaggctggaattcctccgggtgtgtacaatgttattccctgctctcaaa 20511413
Query: 893 agaaggccatggaagtaggggaagcactgtgcacggatcctcttgtgtctaaaatctcct 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20511414 agaaggccatggaagtaggggaagcactgtgcacggatcctcttgtgtctaaaatctcct 20511473
Query: 953 ttacaggctccacagccaccggaaaggt 980
||||||||||||||||||||||||||||
Sbjct: 20511474 ttacaggctccacagccaccggaaaggt 20511501
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 977 aggtcctgttgcaccacgcagcaaactctgtgaaaagggtgtccatggagctgggcggcc 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20515435 aggtcctgttgcaccacgcagcaaactctgtgaaaagggtgtccatggagctgggcggcc 20515494
Query: 1037 atgcccccttcatcgtgttcgacagcgccaatgtggaccaggctgtggcaggggccatgg 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20515495 atgcccccttcatcgtgttcgacagcgccaatgtggaccaggctgtggcaggggccatgg 20515554
Query: 1097 tctccaaatttaggaactctggacag 1122
||||||||||||||||||||||||||
Sbjct: 20515555 tctccaaatttaggaactctggacag 20515580
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 718 tggaatttccccagtgccatgatcacacggaaggtgggggccgccctggcagcgggctgc 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20510023 tggaatttccccagtgccatgatcacacggaaggtgggggccgccctggcagcgggctgc 20510082
Query: 778 acggtggtggtgaaacctgcggaggacacgcccttctccgccctggccttggcccag 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20510083 acggtggtggtgaaacctgcggaggacacgcccttctccgccctggccttggcccag 20510139
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 461 aggagaggagttctttccttcggaaatggtatgatttaatgatacaaaataaggatgacc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20508044 aggagaggagttctttccttcggaaatggtatgatttaatgatacaaaataaggatgacc 20508103
Query: 521 ttgccaagataattacagctgaaagtg 547
|||||||||||||||||||||||||||
Sbjct: 20508104 ttgccaagataattacagctgaaagtg 20508130
Score = 81.8 bits (41), Expect = 1e-12
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1452 gttcgatacagaggaagaggcagttgcgatcgctaatgcangcaatngtgggttggcagg 1511
|||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct: 20524430 gttcgatacagaggaagaggcagtggcgatcgctaatgcagccaat-gtgggttggcagg 20524488
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,336,398
Number of extensions: 413
Number of successful extensions: 413
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 9
Length of query: 1547
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1526
Effective length of database: 2,808,413,156
Effective search space: 4285638476056
Effective search space used: 4285638476056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)