Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003558
(1311 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068758.1| DNA replication licensing factor MCM5 [Bos t... 558 e-171
Alignment gi|NP_001068626.1| DNA replication licensing factor MCM4 [Bos t... 74 2e-13
Alignment gi|NP_001013604.2| DNA replication licensing factor MCM3 [Bos t... 64 4e-10
Alignment gi|NP_001020516.2| DNA replication licensing factor MCM7 [Bos t... 63 7e-10
Alignment gi|XP_002707828.1| PREDICTED: KIAA0030-like [Bos taurus]. 63 7e-10
Alignment gi|XP_869445.4| PREDICTED: minichromosome maintenance complex c... 63 7e-10
Alignment gi|XP_002690126.1| PREDICTED: DNA replication licensing factor ... 52 9e-07
Alignment gi|XP_001789594.1| PREDICTED: minichromosome maintenance comple... 52 9e-07
>ref|NP_001068758.1| DNA replication licensing factor MCM5 [Bos taurus].
Length = 734
Score = 558 bits (1439), Expect(2) = e-171
Identities = 271/276 (98%), Positives = 274/276 (99%)
Frame = +1
Query: 376 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 555
MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK
Sbjct: 1 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60
Query: 556 RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEV 735
RHYNLGEYWIEVEMEDLASFDE+LADYLYKQPAEHLQLLEEAAKEVADEVTRPRP GDEV
Sbjct: 61 RHYNLGEYWIEVEMEDLASFDEELADYLYKQPAEHLQLLEEAAKEVADEVTRPRPAGDEV 120
Query: 736 LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLT 915
LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSC +TLT
Sbjct: 121 LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCHSTLT 180
Query: 916 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 1095
NIAMRPGL+GYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE
Sbjct: 181 NIAMRPGLDGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 240
Query: 1096 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 1203
MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL
Sbjct: 241 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 276
Score = 64.7 bits (156), Expect(2) = e-171
Identities = 31/34 (91%), Positives = 33/34 (97%)
Frame = +3
Query: 1209 HRGRDRVGVGIRSAYIRVLGNQVDTDGSGRSFAG 1310
+RGRDRVGVGIRSAYIRVLG QVDTDGSGR+FAG
Sbjct: 279 NRGRDRVGVGIRSAYIRVLGIQVDTDGSGRTFAG 312
>ref|NP_001068626.1| DNA replication licensing factor MCM4 [Bos taurus].
Length = 836
Score = 74.3 bits (181), Expect = 2e-13
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 4/246 (1%)
Frame = +1
Query: 457 KSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDEDL 627
K QR + F+ + G Y L+ GE ++ V E + SFD +L
Sbjct: 136 KENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLEEINVTGEPFLNVNCEHIKSFDTNL 195
Query: 628 ADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLKSD 804
L P E + + A E+ + D +L+ IQV + ++R+L +
Sbjct: 196 YRQLICYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLNPE 250
Query: 805 TMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAG 984
+ L+ I G+VI S + + QC+ C +T R + + +C+T +
Sbjct: 251 DIDQLIAISGMVIRTSQLIPEMQEAFFQCQVCAHTARVEIDRGRIAEPCVCERCHTSHS- 309
Query: 985 RPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRV 1164
++ ++ D Q +KLQE P+ +P G+ P + L+ L DKV PG+RV
Sbjct: 310 --------MALIHNRSVFSDKQMIKLQESPEDMPAGQTPHTVVLFAHNDLVDKVQPGDRV 361
Query: 1165 TIMGIY 1182
+ GIY
Sbjct: 362 HVTGIY 367
>ref|NP_001013604.2| DNA replication licensing factor MCM3 [Bos taurus].
Length = 808
Score = 63.5 bits (153), Expect = 4e-10
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 9/224 (4%)
Frame = +1
Query: 538 YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717
Y+ +++ + +Y + V + DL +E A+ L E L + A K+ +
Sbjct: 32 YQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLSNAFEELVAFQRALKDFVASIDA-- 89
Query: 718 PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891
T + ++ + L+ + R+L S +S +V + GIV S VR K R C
Sbjct: 90 -TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148
Query: 892 RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050
+ + T LT++ P Y P K + + L Y D Q
Sbjct: 149 PATKKTIERRYSDLTSLVAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197
Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
+ +QE+P+ P G++PR + + D L D+V PG+RV ++G Y
Sbjct: 198 IITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVQVVGTY 241
>ref|NP_001020516.2| DNA replication licensing factor MCM7 [Bos taurus].
Length = 719
Score = 62.8 bits (151), Expect = 7e-10
Identities = 54/272 (19%), Positives = 113/272 (41%), Gaps = 36/272 (13%)
Frame = +1
Query: 475 RFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPA 654
+ K+FL+++ + FKY ++L + + + + V+++D+A D +L D + +
Sbjct: 12 KVKKFLQEFYQDDESGKKQFKYGNQLVQLAHREQVAMYVDLDDIAEDDPELVDSICENTK 71
Query: 655 EHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK--------------------- 762
+ +L +A +E+ + +VL + ++M++
Sbjct: 72 RYARLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPELM 131
Query: 763 ----------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTL 912
S P IR +++D++ LV + GIV S V+ + + C C
Sbjct: 132 RRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGAET 191
Query: 913 TNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVP 1086
P + ++C T+++G ++ K + FQ +K+QE D VP
Sbjct: 192 YQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQVP 245
Query: 1087 HGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
G +PR + + + PG+ V++ GI+
Sbjct: 246 VGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277
>ref|XP_002707828.1| PREDICTED: KIAA0030-like [Bos taurus].
Length = 916
Score = 62.8 bits (151), Expect = 7e-10
Identities = 43/146 (29%), Positives = 69/146 (47%)
Frame = +1
Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
++ RFK FLR + G F + D K + + V EDLA+ + LA +L
Sbjct: 194 EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 249
Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
+ PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+
Sbjct: 250 EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 306
Query: 823 KIPGIVIAASGVRAKATRISIQCRSC 900
+ G+V + +GV + + + C C
Sbjct: 307 RTSGVVTSCTGVLPQLSMVKYNCNKC 332
>ref|XP_869445.4| PREDICTED: minichromosome maintenance complex component 2 isoform 3
[Bos taurus].
Length = 857
Score = 62.8 bits (151), Expect = 7e-10
Identities = 43/146 (29%), Positives = 69/146 (47%)
Frame = +1
Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
++ RFK FLR + G F + D K + + V EDLA+ + LA +L
Sbjct: 194 EIHHRFKNFLRTHVDGRGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 249
Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
+ PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+
Sbjct: 250 EAPAELLQIFDEAALEV---VLAMYPKYDRIASRIHVRISHLPLVEELRSLRQLHLNQLI 306
Query: 823 KIPGIVIAASGVRAKATRISIQCRSC 900
+ G+V + +GV + + + C C
Sbjct: 307 RTSGVVTSCTGVLPQLSMVKYNCNKC 332
>ref|XP_002690126.1| PREDICTED: DNA replication licensing factor MCM9-like [Bos taurus].
Length = 1139
Score = 52.4 bits (124), Expect = 9e-07
Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 8/218 (3%)
Frame = +1
Query: 550 LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRP--RPT 723
LK Y + V L + ++ +Y P E L + + A + A + + +P
Sbjct: 29 LKERDEDAHYPVVVNAMTLFETNMEIGEYFNAFPNEVLTIFDNALRRSALTILQSLSQPE 88
Query: 724 GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894
G + Q++ + P +R K+ + H + + G VI S V+ C
Sbjct: 89 GLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKILEFERDYMCN 148
Query: 895 SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPD---KCKCVDFQTLKLQ 1065
C++ A + P C + + C + + D +C D+Q +K+Q
Sbjct: 149 KCKHVFVVQADFEQYYTFFRPSSCPSLE----NCDSSKFTCLSDLSSPTRCRDYQEIKIQ 204
Query: 1066 ELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
E + G +PR MQ+ + L D G+ +TI G+
Sbjct: 205 EQVQRLSVGSIPRSMQVILEDDLVDSCKSGDDITIYGV 242
>ref|XP_001789594.1| PREDICTED: minichromosome maintenance complex component 9 [Bos
taurus].
Length = 1139
Score = 52.4 bits (124), Expect = 9e-07
Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 8/218 (3%)
Frame = +1
Query: 550 LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRP--RPT 723
LK Y + V L + ++ +Y P E L + + A + A + + +P
Sbjct: 29 LKERDEDAHYPVVVNAMTLFETNMEIGEYFNAFPNEVLTIFDNALRRSALTILQSLSQPE 88
Query: 724 GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894
G + Q++ + P +R K+ + H + + G VI S V+ C
Sbjct: 89 GLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKILEFERDYMCN 148
Query: 895 SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPD---KCKCVDFQTLKLQ 1065
C++ A + P C + + C + + D +C D+Q +K+Q
Sbjct: 149 KCKHVFVVQADFEQYYTFFRPSSCPSLE----NCDSSKFTCLSDLSSPTRCRDYQEIKIQ 204
Query: 1066 ELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
E + G +PR MQ+ + L D G+ +TI G+
Sbjct: 205 EQVQRLSVGSIPRSMQVILEDDLVDSCKSGDDITIYGV 242
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,750,633
Number of extensions: 1326462
Number of successful extensions: 7174
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7117
Number of HSP's successfully gapped: 9
Length of query: 437
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 332
Effective length of database: 14,207,134
Effective search space: 4716768488
Effective search space used: 4716768488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003558
(1311 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853134.1| PREDICTED: similar to DNA replication licensing... 282 3e-88
Alignment gi|XP_541736.2| PREDICTED: similar to minichromosome maintenanc... 84 2e-16
Alignment gi|XP_535063.2| PREDICTED: similar to minichromosome maintenanc... 75 1e-13
Alignment gi|XP_538960.2| PREDICTED: similar to DNA replication licensing... 69 1e-11
Alignment gi|XP_536865.2| PREDICTED: similar to DNA replication licensing... 62 1e-09
Alignment gi|XP_859866.1| PREDICTED: similar to DNA replication licensing... 62 1e-09
Alignment gi|XP_859831.1| PREDICTED: similar to DNA replication licensing... 62 1e-09
Alignment gi|XP_849809.1| PREDICTED: similar to DNA replication licensing... 62 1e-09
>ref|XP_853134.1| PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46
homolog) (P1-CDC46) [Canis familiaris].
Length = 634
Score = 282 bits (721), Expect(2) = 3e-88
Identities = 132/138 (95%), Positives = 137/138 (99%)
Frame = +1
Query: 790 SLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCN 969
S++SD MSHLVKIPGI+I+ASGVRAKATRISIQCRSCRNTL+NIAMRPGLEGYALPRKCN
Sbjct: 39 SVQSDMMSHLVKIPGIIISASGVRAKATRISIQCRSCRNTLSNIAMRPGLEGYALPRKCN 98
Query: 970 TDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV 1149
TDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV
Sbjct: 99 TDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVV 158
Query: 1150 PGNRVTIMGIYSIKKFGL 1203
PGNRVTIMGIYSIKKFGL
Sbjct: 159 PGNRVTIMGIYSIKKFGL 176
Score = 63.2 bits (152), Expect(2) = 3e-88
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = +3
Query: 1212 RGRDRVGVGIRSAYIRVLGNQVDTDGSGRSFAG 1310
+GRDRVGVGIRS+YIRVLG QVDTDGSGRSFAG
Sbjct: 180 KGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAG 212
>ref|XP_541736.2| PREDICTED: similar to minichromosome maintenance protein 2 [Canis
familiaris].
Length = 1001
Score = 84.3 bits (207), Expect = 2e-16
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 1/241 (0%)
Frame = +1
Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
++ RFK FLR + G F + D K + + V EDLA+ + LA +L
Sbjct: 292 EIHHRFKNFLRTHVDGHGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 347
Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
+ PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+
Sbjct: 348 EAPAELLQIFDEAALEV---VLAMYPKYDRIASHIHVRISHLPLVEELRSLRQLHLNQLI 404
Query: 823 KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999
+ G+V + +GV + + + C C L E P C P+C
Sbjct: 405 RTSGVVTSCTGVLPQLSMVKYNCNKCSFVLGPFCQSQNQE--VKPGSC-------PECQS 455
Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
P+ + ++ ++Q +++QE P V G +PR L D PG+ + + GI
Sbjct: 456 AGPFEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGI 515
Query: 1180 Y 1182
Y
Sbjct: 516 Y 516
>ref|XP_535063.2| PREDICTED: similar to minichromosome maintenance protein 4 [Canis
familiaris].
Length = 929
Score = 75.5 bits (184), Expect = 1e-13
Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 4/246 (1%)
Frame = +1
Query: 457 KSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDEDL 627
K QR + F+ + G Y L +GE ++ V E + SFD++L
Sbjct: 229 KENFQRFLQHFIDPLAKEEETIGIDITEPLYMQRLGEINVIGEPFLNVNCEHIQSFDKNL 288
Query: 628 ADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLKSD 804
L P E + + A E+ + D +L+ IQV + ++R+L D
Sbjct: 289 YRQLICYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLNPD 343
Query: 805 TMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAG 984
+ L+ I G+VI S + + QC+ C +T R + ++ C+T +
Sbjct: 344 DIDQLIAISGMVIRTSQLIPEMQEAFFQCQVCAHTARVEIDRGRIAEPSVCEHCHTTHS- 402
Query: 985 RPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRV 1164
++ ++ D Q +KLQE P+ +P G+ P + L+ L DKV PG+RV
Sbjct: 403 --------MALIHNRSVFSDKQMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGDRV 454
Query: 1165 TIMGIY 1182
I GIY
Sbjct: 455 NITGIY 460
>ref|XP_538960.2| PREDICTED: similar to DNA replication licensing factor MCM3 (DNA
polymerase alpha holoenzyme-associated protein P1) (RLF
beta subunit) (P102 protein) (P1-MCM3) [Canis
familiaris].
Length = 916
Score = 68.9 bits (167), Expect = 1e-11
Identities = 74/295 (25%), Positives = 118/295 (40%), Gaps = 10/295 (3%)
Frame = +1
Query: 328 LVNLWFREAREGRGAVMSGFDDPGIFYSDSFGGDNAADEGQARKSQLQR-RFKEFLRQYR 504
++ LW+RE A DP GG + G A L +E R Y
Sbjct: 73 ILALWWREKSASFRAGAGPCGDP----RRGAGGGGSVAAGMAGTVVLDDVELREAQRDYL 128
Query: 505 VGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAA 684
D Y+ +++ + +Y + V + DL +E A+ L E L + A
Sbjct: 129 DFLDDEEDQGIYQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLSNAFEELVAFQRAL 188
Query: 685 KEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGV 858
K+ + T + ++ + L+ + R+L S +S +V + GIV S V
Sbjct: 189 KDFVASIDA---TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLV 245
Query: 859 RAKATRISIQCRSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFI 1017
R K R C + + T LT + P Y P K + + L Y
Sbjct: 246 RPKVVRSVHYCPATKKTIERRYSDLTTLVAFPSSSVY--PTKDEENNPLETEYGLSVY-- 301
Query: 1018 MPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
D QT+ +QE+P+ P G++PR + + D L DKV PG+RV ++G Y
Sbjct: 302 -------KDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDKVKPGDRVQVVGTY 349
>ref|XP_536865.2| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
homolog) (P1.1-MCM3) isoform 1 [Canis familiaris].
Length = 733
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
Frame = +1
Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
+ + K+FL+++ + FKY ++L + + + + ++++D+A D +L D + +
Sbjct: 10 KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69
Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
+ +L +A +E+ + +VL + ++M++
Sbjct: 70 ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129
Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
S P IR +++D++ LV + GIV S V+ + + C C
Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189
Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
P + ++C T+++G ++ K + FQ +K+QE D
Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243
Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
VP G +PR + + + PG+ V++ GI+
Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277
>ref|XP_859866.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
homolog) (P1.1-MCM3) isoform 5 [Canis familiaris].
Length = 724
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
Frame = +1
Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
+ + K+FL+++ + FKY ++L + + + + ++++D+A D +L D + +
Sbjct: 10 KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69
Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
+ +L +A +E+ + +VL + ++M++
Sbjct: 70 ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129
Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
S P IR +++D++ LV + GIV S V+ + + C C
Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189
Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
P + ++C T+++G ++ K + FQ +K+QE D
Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243
Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
VP G +PR + + + PG+ V++ GI+
Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277
>ref|XP_859831.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
homolog) (P1.1-MCM3) isoform 4 [Canis familiaris].
Length = 389
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
Frame = +1
Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
+ + K+FL+++ + FKY ++L + + + + ++++D+A D +L D + +
Sbjct: 10 KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69
Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
+ +L +A +E+ + +VL + ++M++
Sbjct: 70 ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129
Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
S P IR +++D++ LV + GIV S V+ + + C C
Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189
Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
P + ++C T+++G ++ K + FQ +K+QE D
Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243
Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
VP G +PR + + + PG+ V++ GI+
Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277
>ref|XP_849809.1| PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47
homolog) (P1.1-MCM3) isoform 3 [Canis familiaris].
Length = 719
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
Frame = +1
Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
+ + K+FL+++ + FKY ++L + + + + ++++D+A D +L D + +
Sbjct: 10 KEKVKKFLQEFYQDDEYGKKQFKYGNQLVQLAHREQVAMYIDLDDVAEDDPELVDSICEN 69
Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
+ +L +A +E+ + +VL + ++M++
Sbjct: 70 ARRYTRLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGAARSPQNQYPPE 129
Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
S P IR +++D++ LV + GIV S V+ + + C C
Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPRMVVATYTCDQCGA 189
Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
P + ++C T+++G ++ K + FQ +K+QE D
Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFIKFQEMKMQEHSDQ 243
Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
VP G +PR + + + PG+ V++ GI+
Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,639,206
Number of extensions: 1345182
Number of successful extensions: 7450
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7396
Number of HSP's successfully gapped: 9
Length of query: 437
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 331
Effective length of database: 15,340,888
Effective search space: 5077833928
Effective search space used: 5077833928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003558
(1311 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006730.2| DNA replication licensing factor MCM5 [Homo sap... 554 e-170
Alignment gi|NP_004517.2| DNA replication licensing factor MCM2 [Homo sap... 82 8e-16
Alignment gi|NP_877423.1| DNA replication licensing factor MCM4 [Homo sap... 77 3e-14
Alignment gi|NP_005905.2| DNA replication licensing factor MCM4 [Homo sap... 77 3e-14
Alignment gi|NP_002379.2| DNA replication licensing factor MCM3 [Homo sap... 65 1e-10
Alignment gi|NP_005907.3| DNA replication licensing factor MCM7 isoform 1... 64 2e-10
>ref|NP_006730.2| DNA replication licensing factor MCM5 [Homo sapiens].
Length = 734
Score = 554 bits (1427), Expect(2) = e-170
Identities = 269/276 (97%), Positives = 272/276 (98%)
Frame = +1
Query: 376 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 555
MSGFDDPGIFYSDSFGGD ADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK
Sbjct: 1 MSGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60
Query: 556 RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEV 735
RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRP+G+EV
Sbjct: 61 RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPSGEEV 120
Query: 736 LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLT 915
LQDIQVMLKSDASPSSIRSLKSD MSHLVKIPGI+IAAS VRAKATRISIQCRSCRNTLT
Sbjct: 121 LQDIQVMLKSDASPSSIRSLKSDMMSHLVKIPGIIIAASAVRAKATRISIQCRSCRNTLT 180
Query: 916 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 1095
NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE
Sbjct: 181 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 240
Query: 1096 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 1203
MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL
Sbjct: 241 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 276
Score = 64.3 bits (155), Expect(2) = e-170
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +3
Query: 1212 RGRDRVGVGIRSAYIRVLGNQVDTDGSGRSFAG 1310
RGRDRVGVGIRS+YIRVLG QVDTDGSGRSFAG
Sbjct: 280 RGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAG 312
>ref|NP_004517.2| DNA replication licensing factor MCM2 [Homo sapiens].
Length = 904
Score = 82.4 bits (202), Expect = 8e-16
Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 1/241 (0%)
Frame = +1
Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
++ RFK FLR + F + D K + + V EDLA+ + LA +L
Sbjct: 194 EIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 249
Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
+ PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+
Sbjct: 250 EAPAELLQIFDEAALEV---VLAMYPKYDRITNHIHVRISHLPLVEELRSLRQLHLNQLI 306
Query: 823 KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999
+ G+V + +GV + + + C C L E P C P+C
Sbjct: 307 RTSGVVTSCTGVLPQLSMVKYNCNKCNFVLGPFCQSQNQE--VKPGSC-------PECQS 357
Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
P+ + ++ ++Q +++QE P V G +PR L D PG+ + + GI
Sbjct: 358 AGPFEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGI 417
Query: 1180 Y 1182
Y
Sbjct: 418 Y 418
>ref|NP_877423.1| DNA replication licensing factor MCM4 [Homo sapiens].
Length = 863
Score = 77.4 bits (189), Expect = 3e-14
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 4/248 (1%)
Frame = +1
Query: 451 ARKSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDE 621
A K QR + F+ + G Y L +GE ++ V E + SFD+
Sbjct: 161 ACKENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDK 220
Query: 622 DLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLK 798
+L L P E + + A E+ + D +L+ IQV + ++R+L
Sbjct: 221 NLYRQLISYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLN 275
Query: 799 SDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQ 978
+ + L+ I G+VI S + + QC+ C +T T + M G A P C
Sbjct: 276 PEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHT-TRVEMDRGR--IAEPSVCGRCH 332
Query: 979 AGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGN 1158
+ + DK Q +KLQE P+ +P G+ P + L+ L DKV PG+
Sbjct: 333 TTHSMALIHNRSLFSDK------QMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGD 386
Query: 1159 RVTIMGIY 1182
RV + GIY
Sbjct: 387 RVNVTGIY 394
>ref|NP_005905.2| DNA replication licensing factor MCM4 [Homo sapiens].
Length = 863
Score = 77.4 bits (189), Expect = 3e-14
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 4/248 (1%)
Frame = +1
Query: 451 ARKSQLQRRFKEFLRQYRVGTDRTGFTFK---YRDELKRHYNLGEYWIEVEMEDLASFDE 621
A K QR + F+ + G Y L +GE ++ V E + SFD+
Sbjct: 161 ACKENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDK 220
Query: 622 DLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ-DIQVMLKSDASPSSIRSLK 798
+L L P E + + A E+ + D +L+ IQV + ++R+L
Sbjct: 221 NLYRQLISYPQEVIPTFDMAVNEIFFD-----RYPDSILEHQIQVRPFNALKTKNMRNLN 275
Query: 799 SDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQ 978
+ + L+ I G+VI S + + QC+ C +T T + M G A P C
Sbjct: 276 PEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHT-TRVEMDRGR--IAEPSVCGRCH 332
Query: 979 AGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGN 1158
+ + DK Q +KLQE P+ +P G+ P + L+ L DKV PG+
Sbjct: 333 TTHSMALIHNRSLFSDK------QMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGD 386
Query: 1159 RVTIMGIY 1182
RV + GIY
Sbjct: 387 RVNVTGIY 394
>ref|NP_002379.2| DNA replication licensing factor MCM3 [Homo sapiens].
Length = 808
Score = 65.5 bits (158), Expect = 1e-10
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
Frame = +1
Query: 538 YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717
Y+ +++ + +Y + V + DL +E A+ L E L + A K+ +
Sbjct: 32 YQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVASIDA-- 89
Query: 718 PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891
T + ++ V L+ + R+L S +S +V + GIV S VR K R C
Sbjct: 90 -TYAKQYEEFYVGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148
Query: 892 RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050
+ + T LT + P Y P K + + L Y D Q
Sbjct: 149 PATKKTIERRYSDLTTLVAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197
Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
T+ +QE+P+ P G++PR + + D L DK PG+RV ++G Y
Sbjct: 198 TITIQEMPEKAPAGQLPRSVDVILDDDLVDKAKPGDRVQVVGTY 241
>ref|NP_005907.3| DNA replication licensing factor MCM7 isoform 1 [Homo sapiens].
Length = 719
Score = 64.3 bits (155), Expect = 2e-10
Identities = 55/274 (20%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
Frame = +1
Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
+ + K+FL+++ + FKY ++L R + + + V+++D+A D +L D + +
Sbjct: 10 KEKVKKFLQEFYQDDELGKKQFKYGNQLVRLAHREQVALYVDLDDVAEDDPELVDSICEN 69
Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
+ +L +A +E+ + +VL + ++M++
Sbjct: 70 ARRYAKLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGMVRSPQNQYPAE 129
Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
S P IR +++D++ LV + GIV S V+ K + C C
Sbjct: 130 LMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPKMVVATYTCDQCGA 189
Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
P + ++C T+++G ++ + + FQ +K+QE D
Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSRFIKFQEMKMQEHSDQ 243
Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
VP G +PR + + + PG+ V++ GI+
Sbjct: 244 VPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIF 277
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,345,558
Number of extensions: 1281341
Number of successful extensions: 6589
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6550
Number of HSP's successfully gapped: 7
Length of query: 437
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 331
Effective length of database: 14,802,980
Effective search space: 4899786380
Effective search space used: 4899786380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003558
(1311 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032592.2| DNA replication licensing factor MCM5 [Mus musc... 540 e-165
Alignment gi|NP_032590.2| DNA replication licensing factor MCM2 [Mus musc... 82 7e-16
Alignment gi|NP_032591.3| DNA replication licensing factor MCM4 [Mus musc... 71 2e-12
Alignment gi|NP_032589.1| DNA replication licensing factor MCM3 [Mus musc... 67 4e-11
Alignment gi|NP_032594.1| DNA replication licensing factor MCM7 [Mus musc... 62 1e-09
Alignment gi|NP_082106.2| DNA replication licensing factor MCM9 [Mus musc... 52 1e-06
Alignment gi|NP_079952.2| DNA replication licensing factor MCM8 [Mus musc... 50 3e-06
Alignment gi|NP_032593.1| DNA replication licensing factor MCM6 [Mus musc... 50 5e-06
>ref|NP_032592.2| DNA replication licensing factor MCM5 [Mus musculus].
Length = 734
Score = 540 bits (1390), Expect(2) = e-165
Identities = 261/276 (94%), Positives = 268/276 (97%)
Frame = +1
Query: 376 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 555
MSGFDDPGIFYSDSFGGD A+EGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK
Sbjct: 1 MSGFDDPGIFYSDSFGGDPGAEEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60
Query: 556 RHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEV 735
RHYNLGEYWIEVEMEDLASFDE+LAD+L+KQPAEHLQLLEEAAKEVADEVTRPRP GDE+
Sbjct: 61 RHYNLGEYWIEVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVADEVTRPRPAGDEL 120
Query: 736 LQDIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLT 915
LQDIQVMLKSDASPSSIR LKSD MSHLVKIPGI+I+AS VRAKATRISIQCRSC NTLT
Sbjct: 121 LQDIQVMLKSDASPSSIRILKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLT 180
Query: 916 NIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 1095
NIAMRPGLEGYALPRKCN DQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE
Sbjct: 181 NIAMRPGLEGYALPRKCNMDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGE 240
Query: 1096 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 1203
MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL
Sbjct: 241 MPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIKKFGL 276
Score = 63.2 bits (152), Expect(2) = e-165
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = +3
Query: 1212 RGRDRVGVGIRSAYIRVLGNQVDTDGSGRSFAG 1310
+GRDRVGVGIRS+YIRVLG QVDTDGSGRSFAG
Sbjct: 280 KGRDRVGVGIRSSYIRVLGIQVDTDGSGRSFAG 312
>ref|NP_032590.2| DNA replication licensing factor MCM2 [Mus musculus].
Length = 904
Score = 82.4 bits (202), Expect = 7e-16
Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 1/241 (0%)
Frame = +1
Query: 463 QLQRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLY 642
++ RFK FLR + F + D K + + V EDLA+ + LA +L
Sbjct: 194 EIHHRFKNFLRTHVDSHGHNVFKERISDMCKENRES----LVVNYEDLAAREHVLAYFLP 249
Query: 643 KQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLV 822
+ PAE LQ+ +EAA EV V P D + I V + +RSL+ ++ L+
Sbjct: 250 EAPAELLQIFDEAALEV---VLAMYPKYDRITNHIHVRISHLPLVEELRSLRQLHLNQLI 306
Query: 823 KIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKC-P 999
+ G+V + +GV + + + C C L E P C P+C
Sbjct: 307 RTSGVVTSCTGVLPQLSMVKYNCSKCNFVLGPFCQSQNQE--VKPGSC-------PECQS 357
Query: 1000 LDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
P+ I ++ ++Q +++QE P V G +PR L D PG+ + + GI
Sbjct: 358 AGPFEINMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGI 417
Query: 1180 Y 1182
Y
Sbjct: 418 Y 418
>ref|NP_032591.3| DNA replication licensing factor MCM4 [Mus musculus].
Length = 862
Score = 70.9 bits (172), Expect = 2e-12
Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 1/216 (0%)
Frame = +1
Query: 538 YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717
Y +L GE ++ V E + SF ++L L P E + + A E+ +
Sbjct: 192 YMQQLGEINITGEPFLNVNCEHIKSFSKNLYRQLISYPQEVIPTFDMAVNEIFFD----- 246
Query: 718 PTGDEVLQ-DIQVMLKSDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894
D +L+ IQV + S+R+L + + L+ I G+VI S + + QC+
Sbjct: 247 RYPDSILEHQIQVRPFNALKTKSMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFQCQ 306
Query: 895 SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELP 1074
C +T T + + G A P C + DK Q +KLQE P
Sbjct: 307 VCAHT-TRVEIDRGR--IAEPCSCVHCHTTHSMALIHNRSFFSDK------QMIKLQESP 357
Query: 1075 DAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
+ +P G+ P + L+ L DKV PG+RV + GIY
Sbjct: 358 EDMPAGQTPHTIVLFAHNDLVDKVQPGDRVNVTGIY 393
>ref|NP_032589.1| DNA replication licensing factor MCM3 [Mus musculus].
Length = 812
Score = 66.6 bits (161), Expect = 4e-11
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 9/224 (4%)
Frame = +1
Query: 538 YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717
Y+++++ + +Y + V + DL +E A+ L E L + A K+ +
Sbjct: 32 YQNKVRELISDNQYRLIVSVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVASIDA-- 89
Query: 718 PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891
T + ++ + L+ + R+L S +S +V + GIV S VR K R C
Sbjct: 90 -TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148
Query: 892 RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050
+ + T LT + P Y P K + + L Y D Q
Sbjct: 149 PATKKTIERRYSDLTTLVAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197
Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
T+ +QE+P+ P G++PR + + D L DKV PG+R+ ++G Y
Sbjct: 198 TITIQEMPEKAPAGQLPRSVDVILDDDLVDKVKPGDRIQVVGTY 241
>ref|NP_032594.1| DNA replication licensing factor MCM7 [Mus musculus].
Length = 719
Score = 62.0 bits (149), Expect = 1e-09
Identities = 54/274 (19%), Positives = 112/274 (40%), Gaps = 36/274 (13%)
Frame = +1
Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
+ + K+FL+++ + FKY +L + + + V+++D+A D +L D + +
Sbjct: 10 KEKVKKFLQEFYYENELGKKQFKYGTQLVHLAHREQVALYVDLDDIAEDDPELVDSICEN 69
Query: 649 PAEHLQLLEEAAKEVADEVTRPRPTGDEVLQ---DIQVMLK------------------- 762
+ +L + +E+ E +VL + ++M++
Sbjct: 70 AKRYSRLFGDVVQELLPEYKEKEVVNKDVLDVYIEHRLMMEQRSRDPGAVRNPQNQYPSE 129
Query: 763 ------------SDASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRN 906
S + P IR +++D++ L+ + GIV S V+ + + C C
Sbjct: 130 LMRRFELYFRGPSSSKPRVIREVRADSVGKLLTVRGIVTRVSEVKPRMVVATYTCDQCGA 189
Query: 907 TLTNIAMRPGLEGYAL--PRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDA 1080
P + ++C T+++G ++ K V FQ +K+QE D
Sbjct: 190 ETYQPIQSPTFMPLIMCPSQECQTNRSG------GRLYLQTRGSKFVKFQEMKIQEHSDQ 243
Query: 1081 VPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
VP G +PR + + + PG+ V++ GI+
Sbjct: 244 VPVGNIPRSITVVLEGENTRIAQPGDHVSVTGIF 277
>ref|NP_082106.2| DNA replication licensing factor MCM9 [Mus musculus].
Length = 1290
Score = 51.6 bits (122), Expect = 1e-06
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 9/219 (4%)
Frame = +1
Query: 550 LKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTR--PRPT 723
LK Y + V L + ++ DY P E L + + A + A + + P
Sbjct: 185 LKERDEDAHYPVVVNAMSLFETNMEIGDYFTVFPNEVLTVFDSALRRSALAILQSLPETE 244
Query: 724 GDEVLQDIQVMLKS-DASPSSIRSL--KSDTMSHLVKIPGIVIAASGVRAKATRISIQCR 894
G + Q++ + P +R K+ + H + + G VI S V+ C
Sbjct: 245 GLSMKQNLHARISGLPVCPELVREHIPKTKDVGHFLSVTGTVIRTSLVKVLEFERDYMCN 304
Query: 895 SCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPD----KCKCVDFQTLKL 1062
C++ A ++ P C + C + + D +C D+Q +K+
Sbjct: 305 KCKHVFMVEADFEQYYTFSRPSSCPS----LASCDSSKFSCLSDLSSSPARCRDYQEIKI 360
Query: 1063 QELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGI 1179
QE + G +PR M++ + L D G+ +TI G+
Sbjct: 361 QEQVQRLSVGSIPRSMKVILEDDLVDSCKSGDDLTIYGV 399
>ref|NP_079952.2| DNA replication licensing factor MCM8 [Mus musculus].
Length = 805
Score = 50.4 bits (119), Expect = 3e-06
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Frame = +1
Query: 784 IRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEG-YALPR 960
++++++ + I G V+ S ++ T ++ QC +C I P +G Y LP
Sbjct: 172 LKNIRATCYGKYISIRGTVVRVSNIKPLCTNMAFQCAACGE----IQSFPLPDGKYTLPT 227
Query: 961 KCNTDQA-GRPKCPL--DPYFIMPDKCKCVDFQTLKLQELPDAVPH--GEMPRHMQLYCD 1125
KC GR PL P + +D+Q +K+QEL G +PR ++
Sbjct: 228 KCPVPACRGRSFAPLRSSPLTVT------LDWQLIKIQELMSDAQREAGRIPRTIECELV 281
Query: 1126 RYLCDKVVPGNRVTIMGIYSI 1188
L D VPG+ VT+ GI +
Sbjct: 282 HDLVDSCVPGDTVTVTGIVKV 302
>ref|NP_032593.1| DNA replication licensing factor MCM6 [Mus musculus].
Length = 821
Score = 49.7 bits (117), Expect = 5e-06
Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 2/238 (0%)
Frame = +1
Query: 469 QRRFKEFLRQYRVGTDRTGFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQ 648
Q+ F +FL +++ G+D ++ +EL R + V DL F++ L+ + ++
Sbjct: 27 QKLFLDFLEEFQ-GSDGEIKYLQFAEELIRPER---NTLVVSFADLEQFNQQLSTTIQEE 82
Query: 649 PAEHLQLLEEAAKE-VADEVTRPRPTGDEVLQDIQVMLKSDASPSSIRSLKSDTMSHLVK 825
L A K V D P +D V + + IR L S + L +
Sbjct: 83 FYRVYPYLCRALKTFVKDRKEIP------FAKDFYVAFQDLPTRHKIRELTSSRIGLLTR 136
Query: 826 IPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGYALPRKCNTDQAGRPKCPLD 1005
I G V+ V + + C C+ + ++ + Y P C P C
Sbjct: 137 ISGQVVRTHPVHPELVSGTFLCLDCQTVIKDVEQQ---FKYTQPNICRN-----PVCANR 188
Query: 1006 PYFIMP-DKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMG 1176
F++ +K + VDFQ +++QE +P G +PR +++ + G+R G
Sbjct: 189 KRFLLDTNKSRFVDFQKVRIQETQAELPRGSIPRSLEVILRAEAVESAQAGDRCDFTG 246
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,819,890
Number of extensions: 1050547
Number of successful extensions: 5174
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5129
Number of HSP's successfully gapped: 9
Length of query: 437
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 333
Effective length of database: 12,493,815
Effective search space: 4160440395
Effective search space used: 4160440395
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003558
(1311 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362036.1| PREDICTED: DNA replication licensing factor ... 121 8e-28
Alignment gi|XP_003358597.1| PREDICTED: DNA replication licensing factor ... 75 6e-14
Alignment gi|XP_001924848.1| PREDICTED: DNA replication licensing factor ... 64 2e-10
>ref|XP_003362036.1| PREDICTED: DNA replication licensing factor MCM5-like, partial [Sus
scrofa].
Length = 441
Score = 121 bits (304), Expect = 8e-28
Identities = 55/60 (91%), Positives = 57/60 (95%)
Frame = +1
Query: 973 DQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVP 1152
DQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDR L K++P
Sbjct: 1 DQAGRPKCPLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDR-LSVKILP 59
Score = 65.9 bits (159), Expect = 5e-11
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +3
Query: 1209 HRGRDRVGVGIRSAYIRVLGNQVDTDGSGRSFAG 1310
+RGRDRVGVGIRSAYIRVLG QVDTDGSGRSFAG
Sbjct: 130 NRGRDRVGVGIRSAYIRVLGIQVDTDGSGRSFAG 163
>ref|XP_003358597.1| PREDICTED: DNA replication licensing factor MCM2 [Sus scrofa].
Length = 596
Score = 75.5 bits (184), Expect = 6e-14
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 1/199 (0%)
Frame = +1
Query: 589 VEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPRPTGDEVLQDIQVMLKSD 768
V EDLA+ + LA +L + PAE LQ+ +EAA EV V P D + I V +
Sbjct: 11 VNYEDLAAREHVLAYFLPEAPAELLQIFDEAALEV---VLAMYPKYDRIASHIHVRISHL 67
Query: 769 ASPSSIRSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQCRSCRNTLTNIAMRPGLEGY 948
+RSL+ ++ L++ G+V + +GV + + + C C L E
Sbjct: 68 PLVEELRSLRQLHLNQLIRTSGVVTSCTGVLPQLSMVKYNCNKCGFVLGPFCQSQNQE-- 125
Query: 949 ALPRKCNTDQAGRPKC-PLDPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCD 1125
P C P+C P+ + ++ ++Q +++QE P V G +PR
Sbjct: 126 VKPGSC-------PECQSAGPFEVNMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILL 178
Query: 1126 RYLCDKVVPGNRVTIMGIY 1182
L D PG+ + + GIY
Sbjct: 179 ADLVDSCKPGDEIELTGIY 197
>ref|XP_001924848.1| PREDICTED: DNA replication licensing factor MCM3 [Sus scrofa].
Length = 808
Score = 63.9 bits (154), Expect = 2e-10
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
Frame = +1
Query: 538 YRDELKRHYNLGEYWIEVEMEDLASFDEDLADYLYKQPAEHLQLLEEAAKEVADEVTRPR 717
Y+ +++ + +Y + V + DL +E A+ L E L + A K+ +
Sbjct: 32 YQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVASIDA-- 89
Query: 718 PTGDEVLQDIQVMLKSDASPSSI--RSLKSDTMSHLVKIPGIVIAASGVRAKATRISIQC 891
T + ++ + L+ + R+L S +S +V + GIV S VR K R C
Sbjct: 90 -TYAKQYEEFYIGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYC 148
Query: 892 RSCRNT-------LTNIAMRPGLEGYALPRKCNTDQAGRPKCPLDPYFIMPDKCKCVDFQ 1050
+ + T LT + P Y P K + + L Y D Q
Sbjct: 149 PATKKTIERRYTDLTTLEAFPSSSVY--PTKDEENNPLETEYGLSVY---------KDHQ 197
Query: 1051 TLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 1182
+ +QE+P+ P G++PR + + D L DKV PG+RV ++G Y
Sbjct: 198 IITIQEMPEKAPAGQLPRSVDVILDDDLVDKVKPGDRVQVVGTY 241
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,942,232
Number of extensions: 908404
Number of successful extensions: 4639
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4604
Number of HSP's successfully gapped: 4
Length of query: 437
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,804,438
Effective search space: 2949486730
Effective search space used: 2949486730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003558
(1311 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896232.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 313 1e-82
gb|GL894747.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 278 7e-72
gb|GL896505.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 250 2e-63
>gb|GL896232.1| Sus scrofa unplaced genomic scaffold chrU_scaffold593
Length = 17252
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 972 ggatcaggccgggcgccccaagtgcccgctggacccgtacttcatcatgcccgacaagtg 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16980 ggatcaggccgggcgccccaagtgcccgctggacccgtacttcatcatgcccgacaagtg 16921
Query: 1032 caagtgtgtggacttccagaccctgaagttgcaggagctgccggacgcggtgcctcacgg 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16920 caagtgtgtggacttccagaccctgaagttgcaggagctgccggacgcggtgcctcacgg 16861
Query: 1092 cgagatgcccagacacatgcagctctactgcgacaggt 1129
||||||||||||||||||||||||||||||||||||||
Sbjct: 16860 cgagatgcccagacacatgcagctctactgcgacaggt 16823
Score = 188 bits (95), Expect = 5e-45
Identities = 108/111 (97%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 1185 catcaagaagtttggcctgacctcca-caggggccgcgacagggtgggcgtgggcatccg 1243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 14965 catcaagaagtttggcctgacctccaacaggggccgcgacagggtgggcgtgggcatccg 14906
Query: 1244 gagcgcctacatccgggtcctgggcaatcaggtggacacggatggctctgg 1294
|||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 14905 gagcgcctacatccgggtcctgggcatccaggtggacacggatggctctgg 14855
>gb|GL894747.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3381
Length = 17340
Score = 278 bits (140), Expect = 7e-72
Identities = 143/144 (99%)
Strand = Plus / Minus
Query: 227 tggtcgcgcagccctggcgaaccaatgagggcacagcagccgcggcgtccaaaccgcagc 286
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tggtcgcgcagccccggcgaaccaatgagggcacagcagccgcggcgtccaaaccgcagc 127
Query: 287 gtctattttttcccgcgaaactcagcggaggaccgtgggggcttgtgaatctctggttcc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtctattttttcccgcgaaactcagcggaggaccgtgggggcttgtgaatctctggttcc 67
Query: 347 gggaagcgcgggaagggagaggtg 370
||||||||||||||||||||||||
Sbjct: 66 gggaagcgcgggaagggagaggtg 43
Score = 95.6 bits (48), Expect = 6e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 55 ccatccgccatcactgcgccgctctcagcggcatcctccggatcagtt 102
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccatccgccatcactgcgccgctctcagcggcatcctccggatcagtt 287
>gb|GL896505.1| Sus scrofa unplaced genomic scaffold chrU_scaffold839
Length = 3597
Score = 250 bits (126), Expect = 2e-63
Identities = 129/130 (99%)
Strand = Plus / Plus
Query: 669 gctggaggaagctgccaaggaggtggctgatgaggtgacccggccccggcccactggcga 728
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 gctggaggaagctgctaaggaggtggctgatgaggtgacccggccccggcccactggcga 1172
Query: 729 tgaggtgctccaggacatccaggtcatgctcaagtcggacgccagcccgtccagcatccg 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 tgaggtgctccaggacatccaggtcatgctcaagtcggacgccagcccgtccagcatccg 1232
Query: 789 gagcctgaag 798
||||||||||
Sbjct: 1233 gagcctgaag 1242
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 581 ggatcgaggtggagatggaggacctggccagcttcgacgaggacctggccgactacctgt 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 ggatcgaggtggagatggaggacctggccagcttcgacgaggacctggccgactacctgt 1004
Query: 641 acaagcagccagctgagcatttgcagctg 669
|||||||||||||||||||||||||||||
Sbjct: 1005 acaagcagccagctgagcatttgcagctg 1033
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 797 agtcggacacgatgtcgcacctggtgaagatcccgggcatcgtcatcgccgcctccgggg 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3366 agtcggacacgatgtcgcacctggtgaagatcccgggcatcgtcatcgccgcctccgggg 3425
Query: 857 tccgcgccaaggcc 870
||||||||||||||
Sbjct: 3426 tccgcgccaaggcc 3439
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 927 gcgccccggcctggagggctacgccctgcccaggaagtgcaacacg 972
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3540 gcgccccggcctggagggctacgccctgcccaggaagtgcaacacg 3585
Score = 81.8 bits (41), Expect = 9e-13
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 540 cagggatgaactcaagcggcattataacctgggggagtatt 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cagggatgaactcaagcggcattataacctgggggagtatt 790
Score = 73.8 bits (37), Expect = 2e-10
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 540 cagggatgaactcaagcggcattataacctgggggagtatt 580
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 804 cagggatgaactcaaacggcattataacctgggggagtatt 844
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,075,991
Number of extensions: 123
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 10
Length of query: 1311
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1290
Effective length of database: 2,808,413,156
Effective search space: 3622852971240
Effective search space used: 3622852971240
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)