Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003568
(935 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033663.1| coiled-coil domain-containing protein 86 [Bo... 328 4e-90
>ref|NP_001033663.1| coiled-coil domain-containing protein 86 [Bos taurus].
Length = 354
Score = 328 bits (841), Expect = 4e-90
Identities = 182/289 (62%), Positives = 200/289 (69%), Gaps = 1/289 (0%)
Frame = +1
Query: 70 MDTPLRRSRRLEGLKPESPENPTPVLQARRALVELESHPEEAREPGSPRNVQPPGLGSPR 249
MDTPLRRSRRLEGLKPESPENPT VL+ RR LVE ES+P+E EP SP PGLGSP
Sbjct: 1 MDTPLRRSRRLEGLKPESPENPTSVLRVRRVLVEFESNPKETGEPRSP-----PGLGSPS 55
Query: 250 RQSETAPVSPSLQEGAGLGSSQRQPEPGPGSPQRQRDPGLXXXXXXXXXXXXTPGLQSKP 429
RQ ET+P SPSL G LGS ++QPE GSP+ RDPGL + LQ KP
Sbjct: 56 RQPETSPGSPSLPNGPALGSPRKQPELDSGSPEGHRDPGLNFPQNQPESSPESHLLQPKP 115
Query: 430 NGESPKFSQDQ-EADSELAGSKAEQTPESPQHQLQLGPGSLEPYPGQQAPDXXXXXXXXX 606
+ ESPKFSQ+Q EADSEL SK E TP P+HQLQ GSLEP+PGQ+AP
Sbjct: 116 SEESPKFSQNQGEADSELPKSKEEPTPGCPRHQLQQDSGSLEPFPGQKAPGPEPSKPLQE 175
Query: 607 XXXXXXXXXXXXXXXDQNEPSKPAPSRERGRDVLGPKKRESSSVQAPASKKQKKEEVPVI 786
DQ+EPSKP + E R+ PKKRE SS QAPASKK K EE+PVI
Sbjct: 176 LTPRSPGSPR-----DQHEPSKPPAAGEPAREGPAPKKREGSSAQAPASKKPK-EEIPVI 229
Query: 787 PKGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKERQERKLTKDFA 933
PKGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMK+RQERKL KDFA
Sbjct: 230 PKGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKDRQERKLAKDFA 278
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.306 0.127 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,066,669
Number of extensions: 1484004
Number of successful extensions: 8768
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8545
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,306,398
Effective search space: 2990037182
Effective search space used: 2990037182
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003568
(935 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540927.1| PREDICTED: hypothetical protein XP_540927 [Cani... 168 6e-42
>ref|XP_540927.1| PREDICTED: hypothetical protein XP_540927 [Canis familiaris].
Length = 296
Score = 168 bits (426), Expect = 6e-42
Identities = 116/257 (45%), Positives = 132/257 (51%), Gaps = 2/257 (0%)
Frame = +1
Query: 169 ELESHPEEAREPGSPRNVQPPGLGSPRRQSETAPVSPSLQEGAGLGSSQRQPEPGPGSPQ 348
E S P +AREPG P +V RQ E P +P+L+ AG +R P PG
Sbjct: 11 ESGSDPRDAREPGRPGSV---------RQPEPGPGAPALRRDAG----RRPPPMAPG--- 54
Query: 349 RQRDPGLXXXXXXXXXXXXTPGLQSKPNGESPKFSQ-DQEADSELAGSKAEQTPESPQHQ 525
DPG PGLQ P GES F Q +E DSE A P SP+HQ
Sbjct: 55 -PADPGPELPQTPPEAAPEPPGLQPGPRGESAGFPQARRELDSEPA-------PGSPRHQ 106
Query: 526 LQLGPGSLEPYPGQQAPDXXXXXXXXXXXXXXXXXXXXXXXXDQNEPSKPAPSRERGRDV 705
LGP EP+P P Q EPS+PAP+ G
Sbjct: 107 PGLGPP--EPHPEPPPP---------------------GSPRGQREPSRPAPATRTGSSD 143
Query: 706 LGPKKRESSSVQAPASKKQKKEEVP-VIPKGKPKSGRVWKDRSKKRFSQMVQDKPLRTSW 882
LG KKR + A ASKK K+ E VIPKGKP+SGR+WKD SKKRFSQMVQ KPLRTSW
Sbjct: 144 LGAKKRTGPAAHAAASKKLKEVEAALVIPKGKPQSGRLWKDGSKKRFSQMVQSKPLRTSW 203
Query: 883 QRKMKERQERKLTKDFA 933
Q+KMKERQERKL KD A
Sbjct: 204 QQKMKERQERKLAKDLA 220
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.306 0.127 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,997,501
Number of extensions: 1535201
Number of successful extensions: 8942
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8762
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 208
Effective length of database: 15,440,896
Effective search space: 3211706368
Effective search space used: 3211706368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003568
(935 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077003.1| coiled-coil domain-containing protein 86 [Homo ... 324 8e-89
>ref|NP_077003.1| coiled-coil domain-containing protein 86 [Homo sapiens].
Length = 360
Score = 324 bits (830), Expect = 8e-89
Identities = 179/289 (61%), Positives = 198/289 (68%), Gaps = 1/289 (0%)
Frame = +1
Query: 70 MDTPLRRSRRLEGLKPESPENPTPVLQARRALVELESHPEEAREPGSPRNVQPPGLGSPR 249
MDTPLRRSRRL GL+PESPE+ T V + RRALVE ES+PEE REPGSP +VQ GLGSP
Sbjct: 1 MDTPLRRSRRLGGLRPESPESLTSVSRTRRALVEFESNPEETREPGSPPSVQRAGLGSPE 60
Query: 250 RQSETAPVSPSLQEGAGLGSSQRQPEPGPGSPQRQRDPGLXXXXXXXXXXXXTPGLQSKP 429
R +T+P SP LQ+GAGL S Q QPEPG SPQRQ+D L +P Q KP
Sbjct: 61 RPPKTSPGSPRLQQGAGLESPQGQPEPGAASPQRQQDLHLESPQRQPEYSPESPRCQPKP 120
Query: 430 NGESPKFSQDQEA-DSELAGSKAEQTPESPQHQLQLGPGSLEPYPGQQAPDXXXXXXXXX 606
+ E+PK SQDQ SELA +K E TP +PQHQL PGS EPYPGQQAP
Sbjct: 121 SEEAPKCSQDQGVLASELAQNKEELTPGAPQHQLPPVPGSPEPYPGQQAP-----GPEPS 175
Query: 607 XXXXXXXXXXXXXXXDQNEPSKPAPSRERGRDVLGPKKRESSSVQAPASKKQKKEEVPVI 786
Q+EPSKP P+ E G KKR+ SS QAPASKK KEE+PVI
Sbjct: 176 QPLLELTPRAPGSPRGQHEPSKPPPAGETVTGGFGAKKRKGSSSQAPASKKLNKEELPVI 235
Query: 787 PKGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKERQERKLTKDFA 933
PKGKPKSGRVWKDRSKKRFSQM+QDKPLRTSWQRKMKERQERKL KDFA
Sbjct: 236 PKGKPKSGRVWKDRSKKRFSQMLQDKPLRTSWQRKMKERQERKLAKDFA 284
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.306 0.127 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,803,039
Number of extensions: 1472736
Number of successful extensions: 8412
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8192
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,934,836
Effective search space: 3121380724
Effective search space used: 3121380724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003568
(935 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076220.2| coiled-coil domain-containing protein 86 [Mus m... 206 2e-53
>ref|NP_076220.2| coiled-coil domain-containing protein 86 [Mus musculus].
Length = 426
Score = 206 bits (525), Expect = 2e-53
Identities = 156/358 (43%), Positives = 176/358 (49%), Gaps = 70/358 (19%)
Frame = +1
Query: 70 MDTPLRRSRRLEGLKPESPEN-PTP-VLQARRALVELESHPEEAREPGSPRNVQPPGLGS 243
MDTPLRRSRRLEGLKP SPEN P P V +A+RALV+ +S+ EE E S R V P L S
Sbjct: 1 MDTPLRRSRRLEGLKPLSPENLPVPEVSRAKRALVDFKSNSEETGELKSTR-VPPLSLPS 59
Query: 244 PRRQSETAPVSPSLQEGAGLGSSQRQPEPGPGS-----------PQRQRDPG-------- 366
P Q ET+P SP L S QPE PGS PQ + PG
Sbjct: 60 PGPQPETSPGSPC--PPLSLPSPGPQPETSPGSPCPPLSLPSPGPQPETSPGSPCPPLSL 117
Query: 367 --------LXXXXXXXXXXXXTPGLQSKPNGESPKFSQD--------------------Q 462
+PG Q + + SP QD Q
Sbjct: 118 PSPGPQPETSPGSPCPPLSLPSPGPQPEASPGSPGPRQDADDGSPQRQPEPHPGSLQPHQ 177
Query: 463 EADSELAGSKAEQTPESPQHQL--------------------QLGPGSLEPYPGQQAPDX 582
+ E + E +PESPQ + ++ PGS EP PGQQAP
Sbjct: 178 DLGLESPAGQTESSPESPQREQPSKLPPPQGELDSEAAHAKEEVIPGSPEPCPGQQAPGP 237
Query: 583 XXXXXXXXXXXXXXXXXXXXXXXDQNEPSKPAPSRERGRDVLGPKKRESSSVQAPASKKQ 762
Q EP K P+ E + L KKR +S QAPASKK
Sbjct: 238 EPSQPAQELTVQAPSSPER-----QLEPGKLPPAGETVTESLNLKKRVIASPQAPASKKL 292
Query: 763 K-KEEVPVIPKGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKERQERKLTKDFA 933
K KEE+PVIPKGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKERQERKL KDFA
Sbjct: 293 KEKEELPVIPKGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKERQERKLAKDFA 350
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.306 0.127 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,580,625
Number of extensions: 1186306
Number of successful extensions: 6612
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6437
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 210
Effective length of database: 12,583,923
Effective search space: 2642623830
Effective search space used: 2642623830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003568
(935 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122716.1| PREDICTED: coiled-coil domain-containing pro... 498 e-141
>ref|XP_003122716.1| PREDICTED: coiled-coil domain-containing protein 86-like [Sus
scrofa].
Length = 364
Score = 498 bits (1283), Expect = e-141
Identities = 252/288 (87%), Positives = 252/288 (87%)
Frame = +1
Query: 70 MDTPLRRSRRLEGLKPESPENPTPVLQARRALVELESHPEEAREPGSPRNVQPPGLGSPR 249
MDTPLRRSRRLEGLKPESPENPTPVLQARRALVELESHPEEAREPGSPRNVQPPGLGSPR
Sbjct: 1 MDTPLRRSRRLEGLKPESPENPTPVLQARRALVELESHPEEAREPGSPRNVQPPGLGSPR 60
Query: 250 RQSETAPVSPSLQEGAGLGSSQRQPEPGPGSPQRQRDPGLXXXXXXXXXXXXTPGLQSKP 429
RQSETAPVSPSLQEGAGLGSSQRQPEPGPGSPQRQRDPGL TPGLQSKP
Sbjct: 61 RQSETAPVSPSLQEGAGLGSSQRQPEPGPGSPQRQRDPGLESSQRQPESSPETPGLQSKP 120
Query: 430 NGESPKFSQDQEADSELAGSKAEQTPESPQHQLQLGPGSLEPYPGQQAPDXXXXXXXXXX 609
NGESPKFSQDQEADSELAGSKAEQTPESPQHQLQLGPGSLEPYPGQQAPD
Sbjct: 121 NGESPKFSQDQEADSELAGSKAEQTPESPQHQLQLGPGSLEPYPGQQAPDLEPSQPLQEL 180
Query: 610 XXXXXXXXXXXXXXDQNEPSKPAPSRERGRDVLGPKKRESSSVQAPASKKQKKEEVPVIP 789
DQNEPSKPAPSRERGRDVLGPKKRESSSVQAPASKKQKKEEVPVIP
Sbjct: 181 PLQELPLQSPGSPQDQNEPSKPAPSRERGRDVLGPKKRESSSVQAPASKKQKKEEVPVIP 240
Query: 790 KGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKERQERKLTKDFA 933
KGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKERQERKLTKDFA
Sbjct: 241 KGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKERQERKLTKDFA 288
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.306 0.127 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,281,418
Number of extensions: 964205
Number of successful extensions: 5576
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5456
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 212
Effective length of database: 8,879,129
Effective search space: 1882375348
Effective search space used: 1882375348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003568
(935 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1647 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1647 bits (831), Expect = 0.0
Identities = 834/835 (99%)
Strand = Plus / Plus
Query: 7 aggacggcgccgggagtcccagaagctgcacgtgggcttggatttagaaactctggcggt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480103 aggacggcgccgggagtcccagaagctgcacgtgggcttggatttagaaactctggcggt 10480162
Query: 67 gccatggatacacctctcaggcgcagtcggcggctggaaggactaaagcctgaatccccc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480163 gccatggatacacctctcaggcgcagtcggcggctggaaggactaaagcctgaatccccc 10480222
Query: 127 gagaaccccaccccagttttgcaggcgagacgggcccttgtggagctcgagtcgcaccca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480223 gagaaccccaccccagttttgcaggcgagacgggcccttgtggagctcgagtcgcaccca 10480282
Query: 187 gaagaagcgagggagcccgggtctcctcggaatgtgcagccaccaggtttggggtccccc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480283 gaagaagcgagggagcccgggtctcctcggaatgtgcagccaccaggtttggggtccccc 10480342
Query: 247 agacgtcagtcagagacagctccagtttcacccagtctacaggaaggggcaggcttgggg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480343 agacgtcagtcagagacagctccagtttcacccagtctacaggaaggggcaggcttgggg 10480402
Query: 307 tcctcccagagacagccagagccgggcccagggtccccccagcgtcagcgagatccgggt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480403 tcctcccagagacagccagagccgggcccagggtccccccagcgtcagcgagatccgggt 10480462
Query: 367 ctggagtcttcccaaaggcagccggaatcgagtcctgaaaccccaggacttcagtcaaag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480463 ctggagtcttcccaaaggcagccggaatcgagtcctgaaaccccaggacttcagtcaaag 10480522
Query: 427 ccaaatggggagtcaccaaagttctcccaggaccaagaagcggattcggagttggccggg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480523 ccaaatggggagtcaccaaagttctcccaggaccaagaagcggattcggagttggccggg 10480582
Query: 487 agtaaggcggagcagaccccggagtctccccaacatcagctgcagttgggcccagggtca 546
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480583 agtaaggcggagcagactccggagtctccccaacatcagctgcagttgggcccagggtca 10480642
Query: 547 ctagagccttaccccggtcagcaagcgccggatctggagccctcgcagccactacaggag 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480643 ctagagccttaccccggtcagcaagcgccggatctggagccctcgcagccactacaggag 10480702
Query: 607 ctgccactgcaggagctgccactccagtcacccggttccccacaggatcagaacgagcca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480703 ctgccactgcaggagctgccactccagtcacccggttccccacaggatcagaacgagcca 10480762
Query: 667 agcaagccagctccatccagggaaagggggagagacgtcctcgggccaaagaagcgagaa 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480763 agcaagccagctccatccagggaaagggggagagacgtcctcgggccaaagaagcgagaa 10480822
Query: 727 agttcttcagtccaggccccagcgtccaaaaagcagaagaaagaggaggttcctgttatc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480823 agttcttcagtccaggccccagcgtccaaaaagcagaagaaagaggaggttcctgttatc 10480882
Query: 787 ccgaaggggaagcccaagtctgggcgagtgtggaaggaccgctcaaagaagaggt 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10480883 ccgaaggggaagcccaagtctgggcgagtgtggaaggaccgctcaaagaagaggt 10480937
Score = 190 bits (96), Expect = 9e-46
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 838 aggttctcccaaatggtccaggacaagcccctgcgcacatcttggcagagaaagatgaag 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10486155 aggttctcccaaatggtccaggacaagcccctgcgcacatcttggcagagaaagatgaag 10486214
Query: 898 gagcggcaggagaggaagctgaccaaggacttcgcc 933
||||||||||||||||||||||||||||||||||||
Sbjct: 10486215 gagcggcaggagaggaagctgaccaaggacttcgcc 10486250
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,239,877
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 935
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 914
Effective length of database: 2,808,413,156
Effective search space: 2566889624584
Effective search space used: 2566889624584
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)