Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003574
(1048 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069590.1| heparan sulfate glucosamine 3-O-sulfotransfe... 380 e-106
Alignment gi|NP_001069683.1| heparan sulfate glucosamine 3-O-sulfotransfe... 210 1e-54
Alignment gi|NP_001192923.1| heparan sulfate glucosamine 3-O-sulfotransfe... 160 2e-39
Alignment gi|XP_002698041.1| PREDICTED: heparan sulfate D-glucosaminyl 3-... 160 2e-39
Alignment gi|NP_001180068.1| heparan sulfate glucosamine 3-O-sulfotransfe... 155 6e-38
Alignment gi|XP_002695860.1| PREDICTED: heparan sulfate D-glucosaminyl 3-... 155 6e-38
Alignment gi|XP_002697966.1| PREDICTED: heparan sulfate (glucosamine) 3-O... 155 7e-38
Alignment gi|XP_613603.2| PREDICTED: heparan sulfate (glucosamine) 3-O-su... 155 7e-38
Alignment gi|NP_001179477.1| heparan sulfate glucosamine 3-O-sulfotransfe... 150 1e-36
Alignment gi|XP_002695859.1| PREDICTED: heparan sulfate D-glucosaminyl 3-... 149 4e-36
>ref|NP_001069590.1| heparan sulfate glucosamine 3-O-sulfotransferase 1 [Bos taurus].
Length = 312
Score = 380 bits (977), Expect = e-106
Identities = 187/213 (87%), Positives = 193/213 (90%), Gaps = 1/213 (0%)
Frame = +1
Query: 412 PCRPAM-PGAGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEM 588
P RPA+ PG P ELVRKAA LQ+E+ D AAPNGS QQLPQTIIIGVRKGGTRALLEM
Sbjct: 19 PSRPAVVPGDEPGLPELVRKAAALQEEISDGAAPNGSAQQLPQTIIIGVRKGGTRALLEM 78
Query: 589 LSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERV 768
LSLHPDVAAAENEVHFFDWEEHYSQGL WYLSQMPFS PHQLTVEKTPAYFTSPKVPERV
Sbjct: 79 LSLHPDVAAAENEVHFFDWEEHYSQGLGWYLSQMPFSAPHQLTVEKTPAYFTSPKVPERV 138
Query: 769 HRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVDYKAPHR 948
H MNP+IRLLLILRDPSERVLSDYTQVFYNHVQK KPYPSIEEFLVRDGRLNVDYKA +R
Sbjct: 139 HGMNPAIRLLLILRDPSERVLSDYTQVFYNHVQKRKPYPSIEEFLVRDGRLNVDYKALNR 198
Query: 949 SLYHVHMQNWLRFFSAGRIHIVDGDRLIRDPIP 1047
SLYH+HMQNWLRFF RIHIVDGDRLIRDP P
Sbjct: 199 SLYHLHMQNWLRFFPLRRIHIVDGDRLIRDPFP 231
>ref|NP_001069683.1| heparan sulfate glucosamine 3-O-sulfotransferase 5 [Bos taurus].
Length = 345
Score = 210 bits (535), Expect = 1e-54
Identities = 96/178 (53%), Positives = 133/178 (74%), Gaps = 2/178 (1%)
Frame = +1
Query: 520 VQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFS 699
VQQLP+ IIIGVRKGGTRALLEML+LHP V A E+HFFD +E+Y++G++WY +MPFS
Sbjct: 86 VQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDNDENYAKGIEWYRKKMPFS 145
Query: 700 YPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKP 879
YP Q+T+EK+PAYF + +VPER+++MN SI+LL+I+R+P+ R +SDYTQV +K+K
Sbjct: 146 YPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKT 205
Query: 880 YPSIEEFLVRDG--RLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDPIP 1047
Y E+ + +N YKA S+Y H++ WL++F + HIVDGDRLI +P+P
Sbjct: 206 YYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHIVDGDRLITEPLP 263
>ref|NP_001192923.1| heparan sulfate glucosamine 3-O-sulfotransferase 2 [Bos taurus].
Length = 367
Score = 160 bits (405), Expect = 2e-39
Identities = 85/217 (39%), Positives = 127/217 (58%), Gaps = 7/217 (3%)
Frame = +1
Query: 412 PCRPAMPGAG----PSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRAL 579
PC P+ P G PS + L S +P ++LPQ +I+GV+KGGTRA+
Sbjct: 72 PCDPSGPTPGEPGAPSAPAAGAPSPRLSGS-NHSGSPKLGTKRLPQALIVGVKKGGTRAV 130
Query: 580 LEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVP 759
LE + +HPDV A E HFFD +Y +GLDWY S MP + Q+T+EKTP+YF + + P
Sbjct: 131 LEFIRVHPDVRALGTEPHFFD--RNYGRGLDWYRSLMPRTLESQITLEKTPSYFVTQEAP 188
Query: 760 ERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNVD 930
R+ M+ +L++++R+P R +SDYTQ + K P+ E R+ G ++V
Sbjct: 189 RRIFNMSRDTKLIVVVRNPVTRAISDYTQT----LSKKPDIPTFEGLSFRNRTLGLVDVS 244
Query: 931 YKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+ A +Y +H+++WLR+F +IH V G+RLI DP
Sbjct: 245 WNAIRIGMYALHLESWLRYFPLAQIHFVSGERLITDP 281
>ref|XP_002698041.1| PREDICTED: heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2-like
[Bos taurus].
Length = 367
Score = 160 bits (405), Expect = 2e-39
Identities = 85/217 (39%), Positives = 127/217 (58%), Gaps = 7/217 (3%)
Frame = +1
Query: 412 PCRPAMPGAG----PSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRAL 579
PC P+ P G PS + L S +P ++LPQ +I+GV+KGGTRA+
Sbjct: 72 PCDPSGPTPGEPGAPSAPAAGAPSPRLSGS-NHSGSPKLGTKRLPQALIVGVKKGGTRAV 130
Query: 580 LEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVP 759
LE + +HPDV A E HFFD +Y +GLDWY S MP + Q+T+EKTP+YF + + P
Sbjct: 131 LEFIRVHPDVRALGTEPHFFD--RNYGRGLDWYRSLMPRTLESQITLEKTPSYFVTQEAP 188
Query: 760 ERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNVD 930
R+ M+ +L++++R+P R +SDYTQ + K P+ E R+ G ++V
Sbjct: 189 RRIFNMSRDTKLIVVVRNPVTRAISDYTQT----LSKKPDIPTFEGLSFRNRTLGLVDVS 244
Query: 931 YKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+ A +Y +H+++WLR+F +IH V G+RLI DP
Sbjct: 245 WNAIRIGMYALHLESWLRYFPLAQIHFVSGERLITDP 281
>ref|NP_001180068.1| heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [Bos taurus].
Length = 388
Score = 155 bits (392), Expect = 6e-38
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 13/220 (5%)
Frame = +1
Query: 421 PAMPGAGPSQQELVRKAATLQDE----VRDSAAPNGSV------QQLPQTIIIGVRKGGT 570
PA P + E + + A Q+E DS +P S +QLPQ IIIGV+KGGT
Sbjct: 89 PASPATQSAAGEEMAEGAASQEEQSPETPDSPSPISSFFSGSGSKQLPQAIIIGVKKGGT 148
Query: 571 RALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSP 750
RALLE L +HPDV A E HFFD Y +GL WY MP + Q+T+EKTP+YF +
Sbjct: 149 RALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTR 206
Query: 751 KVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRL 921
+ P R+ M+ +LL+++RDP R +SDYTQ + K PS E R+ G +
Sbjct: 207 EAPARISAMSKDTKLLVVVRDPVTRAVSDYTQT----LSKRPDIPSFESLAFRNRSAGLV 262
Query: 922 NVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+ + A LY H++ WLR F A ++ V G+RL+RDP
Sbjct: 263 DRSWSAIQIGLYAEHLERWLRHFPARQMLFVSGERLVRDP 302
>ref|XP_002695860.1| PREDICTED: heparan sulfate D-glucosaminyl 3-O-sulfotransferase
3B1-like [Bos taurus].
Length = 388
Score = 155 bits (392), Expect = 6e-38
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 13/220 (5%)
Frame = +1
Query: 421 PAMPGAGPSQQELVRKAATLQDE----VRDSAAPNGSV------QQLPQTIIIGVRKGGT 570
PA P + E + + A Q+E DS +P S +QLPQ IIIGV+KGGT
Sbjct: 89 PASPATQSAAGEEMAEGAASQEEQSPETPDSPSPISSFFSGSGSKQLPQAIIIGVKKGGT 148
Query: 571 RALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSP 750
RALLE L +HPDV A E HFFD Y +GL WY MP + Q+T+EKTP+YF +
Sbjct: 149 RALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTR 206
Query: 751 KVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRL 921
+ P R+ M+ +LL+++RDP R +SDYTQ + K PS E R+ G +
Sbjct: 207 EAPARISAMSKDTKLLVVVRDPVTRAVSDYTQT----LSKRPDIPSFESLAFRNRSAGLV 262
Query: 922 NVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+ + A LY H++ WLR F A ++ V G+RL+RDP
Sbjct: 263 DRSWSAIQIGLYAEHLERWLRHFPARQMLFVSGERLVRDP 302
>ref|XP_002697966.1| PREDICTED: heparan sulfate (glucosamine) 3-O-sulfotransferase 6-like
[Bos taurus].
Length = 342
Score = 155 bits (391), Expect = 7e-38
Identities = 86/213 (40%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Frame = +1
Query: 415 CRPA--MPGAGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEM 588
C PA +P P++ E R + + ++ A+ +G ++ PQ +I+GV+KGGTRALLE
Sbjct: 51 CPPAGRVPAPAPARAEPPRASRSPREPGLPVASGSGR-RRFPQALIVGVKKGGTRALLEF 109
Query: 589 LSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERV 768
L LHPD+ A +E HFFD Y +GL WY S MP + Q+T+EKTP+YF + + P R+
Sbjct: 110 LRLHPDIRALGSEPHFFD--RCYERGLAWYRSLMPRTLDGQITLEKTPSYFVTREAPRRI 167
Query: 769 HRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVD--YKAP 942
H M+P+ +L++++R+P R +SDY Q + K PS R G VD + A
Sbjct: 168 HSMSPATKLIVVVRNPVTRAISDYAQT----LSKTPGLPSFGALAFRRGLGPVDTAWSAV 223
Query: 943 HRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
LY H+ NWLR+F R V G+RL+ DP
Sbjct: 224 RIGLYAQHLDNWLRYFPLSRFLFVSGERLVSDP 256
>ref|XP_613603.2| PREDICTED: heparan sulfate (glucosamine) 3-O-sulfotransferase 6-like
[Bos taurus].
Length = 342
Score = 155 bits (391), Expect = 7e-38
Identities = 86/213 (40%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Frame = +1
Query: 415 CRPA--MPGAGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEM 588
C PA +P P++ E R + + ++ A+ +G ++ PQ +I+GV+KGGTRALLE
Sbjct: 51 CPPAGRVPAPAPARAEPPRASRSPREPGLPVASGSGR-RRFPQALIVGVKKGGTRALLEF 109
Query: 589 LSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERV 768
L LHPD+ A +E HFFD Y +GL WY S MP + Q+T+EKTP+YF + + P R+
Sbjct: 110 LRLHPDIRALGSEPHFFD--RCYERGLAWYRSLMPRTLDGQITLEKTPSYFVTREAPRRI 167
Query: 769 HRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVD--YKAP 942
H M+P+ +L++++R+P R +SDY Q + K PS R G VD + A
Sbjct: 168 HSMSPATKLIVVVRNPVTRAISDYAQT----LSKTPGLPSFGALAFRRGLGPVDTAWSAV 223
Query: 943 HRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
LY H+ NWLR+F R V G+RL+ DP
Sbjct: 224 RIGLYAQHLDNWLRYFPLSRFLFVSGERLVSDP 256
>ref|NP_001179477.1| heparan sulfate glucosamine 3-O-sulfotransferase 3A1 [Bos taurus].
Length = 405
Score = 150 bits (380), Expect = 1e-36
Identities = 80/176 (45%), Positives = 108/176 (61%), Gaps = 3/176 (1%)
Frame = +1
Query: 523 QQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSY 702
+QLPQ IIIGV+KGGTRALLE L +HPDV A E HFFD Y +GL WY MP +
Sbjct: 149 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWYRDLMPRTL 206
Query: 703 PHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPY 882
Q+T+EKTP+YF + + P R+ M+ +LL+++RDP R +SDYTQ + K
Sbjct: 207 DGQITMEKTPSYFVTREAPARISAMSKDTKLLVVVRDPVTRAVSDYTQT----LSKRPDI 262
Query: 883 PSIEEFLVRD---GRLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
PS E R+ G ++ + A LY H++ WLR F A ++ V G+RL+RDP
Sbjct: 263 PSFESLAFRNRSAGLVDRSWSAIQIGLYAEHLERWLRHFPARQMLFVSGERLVRDP 318
>ref|XP_002695859.1| PREDICTED: heparan sulfate D-glucosaminyl 3-O-sulfotransferase
3A1-like [Bos taurus].
Length = 405
Score = 149 bits (376), Expect = 4e-36
Identities = 79/176 (44%), Positives = 108/176 (61%), Gaps = 3/176 (1%)
Frame = +1
Query: 523 QQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSY 702
+QLPQ IIIGV+KGGTRALLE L +HPDV A E HFFD Y +GL WY +P +
Sbjct: 149 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWYRQLIPQTL 206
Query: 703 PHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPY 882
Q+T+EKTP+YF + + P R+ M+ +LL+++RDP R +SDYTQ + K
Sbjct: 207 DGQITMEKTPSYFVTREAPARISAMSKDTKLLVVVRDPVTRAVSDYTQT----LSKRPDI 262
Query: 883 PSIEEFLVRD---GRLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
PS E R+ G ++ + A LY H++ WLR F A ++ V G+RL+RDP
Sbjct: 263 PSFESLAFRNRSAGLVDRSWSAIQIGLYAEHLERWLRHFPARQMLFVSGERLVRDP 318
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,570,733
Number of extensions: 920253
Number of successful extensions: 5112
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 5064
Number of HSP's successfully gapped: 19
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003574
(1048 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536238.1| PREDICTED: similar to heparan sulfate D-glucosa... 370 e-102
Alignment gi|XP_539089.2| PREDICTED: similar to heparan sulfate (glucosam... 214 1e-55
Alignment gi|XP_547095.2| PREDICTED: similar to heparan sulfate D-glucosa... 159 5e-39
Alignment gi|XP_546635.2| PREDICTED: similar to heparan sulfate D-glucosa... 154 2e-37
Alignment gi|XP_546631.2| PREDICTED: similar to heparan sulfate D-glucosa... 147 2e-35
Alignment gi|XP_547186.2| PREDICTED: similar to heparan sulfate (glucosam... 91 2e-18
Alignment gi|XP_547080.2| PREDICTED: similar to heparan sulfate D-glucosa... 89 7e-18
Alignment gi|XP_545034.1| PREDICTED: similar to N-deacetylase/N-sulfotran... 85 1e-16
Alignment gi|XP_545041.2| PREDICTED: similar to N-deacetylase/N-sulfotran... 84 3e-16
Alignment gi|XP_851568.1| PREDICTED: similar to N-deacetylase/N-sulfotran... 84 3e-16
>ref|XP_536238.1| PREDICTED: similar to heparan sulfate D-glucosaminyl
3-O-sulfotransferase 1 precursor [Canis familiaris].
Length = 309
Score = 370 bits (949), Expect = e-102
Identities = 183/212 (86%), Positives = 186/212 (87%)
Frame = +1
Query: 412 PCRPAMPGAGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEML 591
P RPA PGA P +AATLQ E RD AAPNGS QQLPQTIIIGVRKGGTRALLEML
Sbjct: 23 PSRPAAPGAEPG------RAATLQGEGRDGAAPNGSAQQLPQTIIIGVRKGGTRALLEML 76
Query: 592 SLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVH 771
SLHPDVAAAENEVHFFDWEEHYSQGL WYL QMPFS PHQLTVEKTPAYFTSPKVPERVH
Sbjct: 77 SLHPDVAAAENEVHFFDWEEHYSQGLGWYLGQMPFSSPHQLTVEKTPAYFTSPKVPERVH 136
Query: 772 RMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVDYKAPHRS 951
MNP IRLLLILRDPSERVLSDYTQVFYNHVQK KPYPSIEEFLVRDGRLNV YKA +RS
Sbjct: 137 SMNPGIRLLLILRDPSERVLSDYTQVFYNHVQKRKPYPSIEEFLVRDGRLNVGYKALNRS 196
Query: 952 LYHVHMQNWLRFFSAGRIHIVDGDRLIRDPIP 1047
LYHVH+QNWLRFF RIHIVDGDRLIRDP P
Sbjct: 197 LYHVHLQNWLRFFPLRRIHIVDGDRLIRDPFP 228
>ref|XP_539089.2| PREDICTED: similar to heparan sulfate (glucosamine)
3-O-sulfotransferase 5 [Canis familiaris].
Length = 345
Score = 214 bits (544), Expect = 1e-55
Identities = 102/197 (51%), Positives = 142/197 (72%), Gaps = 2/197 (1%)
Frame = +1
Query: 463 RKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFD 642
RK T +D+VR + VQQLP+ IIIGVRKGGTRALLEML+LHP V A E+HFFD
Sbjct: 71 RKGNTSKDQVR----LHDLVQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFD 126
Query: 643 WEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSE 822
+E+Y++G++WY +MPFSYP Q+T+EK+PAYF + +VPER+++MN SI+LL+I+R+P+
Sbjct: 127 NDENYAKGIEWYRKKMPFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTT 186
Query: 823 RVLSDYTQVFYNHVQKHKPYPSIEEFLVRDG--RLNVDYKAPHRSLYHVHMQNWLRFFSA 996
R +SDYTQV +K+K Y E+ + +N YKA S+Y H++ WL++F
Sbjct: 187 RAISDYTQVLEGKERKNKTYYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPI 246
Query: 997 GRIHIVDGDRLIRDPIP 1047
+ HIVDGDRLI +P+P
Sbjct: 247 EQFHIVDGDRLITEPLP 263
>ref|XP_547095.2| PREDICTED: similar to heparan sulfate D-glucosaminyl
3-O-sulfotransferase 2 [Canis familiaris].
Length = 356
Score = 159 bits (401), Expect = 5e-39
Identities = 86/213 (40%), Positives = 129/213 (60%), Gaps = 3/213 (1%)
Frame = +1
Query: 412 PCRPAMPGAGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEML 591
PC P PG PS AA L +A G+ ++LPQ +I+GV+KGGTRA+LE +
Sbjct: 72 PCDP--PGPTPSAP-----AARLPAANHSGSARLGT-KRLPQALIVGVKKGGTRAVLEFI 123
Query: 592 SLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVH 771
+HPDV A E HFFD +Y +GLDWY S MP + Q+T+EKTP+YF + + P R+
Sbjct: 124 RVHPDVRALGTEPHFFD--RNYGRGLDWYRSLMPRTLESQITLEKTPSYFVTQEAPRRIF 181
Query: 772 RMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNVDYKAP 942
M+ +L++++R+P R +SDYTQ + K P+ E R+ G+++V + A
Sbjct: 182 NMSRDTKLIVVVRNPVTRAISDYTQT----LSKKPDIPTFEGLSFRNRTLGQVDVSWNAI 237
Query: 943 HRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+Y +H+++WL++F +IH V G+RLI DP
Sbjct: 238 RIGMYALHLESWLQYFPLAQIHFVSGERLITDP 270
>ref|XP_546635.2| PREDICTED: similar to heparan sulfate D-glucosaminyl
3-O-sulfotransferase 3A1 [Canis familiaris].
Length = 390
Score = 154 bits (388), Expect = 2e-37
Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 12/222 (5%)
Frame = +1
Query: 412 PCRPAMPGAGPSQQELVRKAATLQDEVRDSAAPNGSV---------QQLPQTIIIGVRKG 564
P PA P A + QE AA+ ++ ++ P S+ +QLPQ IIIGV+KG
Sbjct: 91 PAAPATPPA--AGQEPAEGAASQEEPSPEAPDPPSSISSFFSGSGSKQLPQAIIIGVKKG 148
Query: 565 GTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFT 744
GTRALLE L +HPDV A E HFFD Y +GL WY MP + Q+T+EKTP+YF
Sbjct: 149 GTRALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWYRDLMPRTLDGQITMEKTPSYFV 206
Query: 745 SPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---G 915
+ + P R+ M+ +L++++RDP R +SDYTQ + K P+ E ++ G
Sbjct: 207 TREAPARISAMSKDTKLIVVVRDPVTRAISDYTQT----LSKRPDIPTFESLTFKNRSTG 262
Query: 916 RLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
++ + A +Y H+++WLR F G++ V G+RLI DP
Sbjct: 263 LIDTSWSAIQIGIYAKHLEHWLRHFPLGQMLFVSGERLISDP 304
>ref|XP_546631.2| PREDICTED: similar to heparan sulfate D-glucosaminyl
3-O-sulfotransferase 3A1 [Canis familiaris].
Length = 411
Score = 147 bits (371), Expect = 2e-35
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 4/211 (1%)
Frame = +1
Query: 421 PAMPGAGPSQQELVRKA-ATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSL 597
P GAG S E A L DE GS ++LPQ IIIGV+KGGTRALLE L +
Sbjct: 129 PGGSGAGSSAAEAPPGTLALLLDE--------GS-KRLPQAIIIGVKKGGTRALLEFLRV 179
Query: 598 HPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVHRM 777
HPDV A E HFFD Y +GL WY MP + Q+T+EKTP+YF + + P R+ M
Sbjct: 180 HPDVRAVGAEPHFFD--RSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPARISAM 237
Query: 778 NPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNVDYKAPHR 948
+ +L++++RDP R +SDYTQ + K P+ E ++ G ++ + A
Sbjct: 238 SKDTKLIVVVRDPVTRAISDYTQT----LSKRPDIPTFESLTFKNRSTGLIDTSWSAIQI 293
Query: 949 SLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+Y H+++WLR F G++ V G+RLI DP
Sbjct: 294 GIYAKHLEHWLRHFPLGQMLFVSGERLISDP 324
>ref|XP_547186.2| PREDICTED: similar to heparan sulfate (glucosamine)
3-O-sulfotransferase 6 [Canis familiaris].
Length = 235
Score = 90.9 bits (224), Expect = 2e-18
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Frame = +1
Query: 682 SQMPFSYPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNH 861
S MP + Q+T+EKTP+YF + + P R+H M+P +L++++R+P R +SDY Q
Sbjct: 32 SLMPRTLDGQITMEKTPSYFVTREAPGRIHGMSPDTKLIVVVRNPVTRAISDYAQT---- 87
Query: 862 VQKHKPYPSIEEFLVRDGRLNVD--YKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIR 1035
+ K PS R G VD + A LY H+ NWLRFF R V G+RL+
Sbjct: 88 LSKTPGLPSFRALAFRHGLGPVDTAWSAVRIGLYAQHLDNWLRFFPLSRFLFVSGERLVS 147
Query: 1036 DP 1041
DP
Sbjct: 148 DP 149
>ref|XP_547080.2| PREDICTED: similar to heparan sulfate D-glucosaminyl
3-O-sulfotransferase 4 [Canis familiaris].
Length = 227
Score = 89.0 bits (219), Expect = 7e-18
Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Frame = +1
Query: 688 MPFSYPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQ 867
MP + Q+T+EKTP+YF + + P+R+H M I+L++++R+P R +SDYTQ +
Sbjct: 19 MPKTLDGQVTMEKTPSYFVTNEAPQRIHAMAKDIKLIVVVRNPVTRAISDYTQT----LS 74
Query: 868 KHKPYPSIEEFLVRD---GRLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRD 1038
K P+ E ++ G ++ + A +Y +H++NWL++F +I V G+RLI D
Sbjct: 75 KKPEIPTFEVLAFKNRTLGLIDASWSAIRIGIYALHLENWLQYFPLSQILFVSGERLIVD 134
Query: 1039 P 1041
P
Sbjct: 135 P 135
>ref|XP_545034.1| PREDICTED: similar to N-deacetylase/N-sulfotransferase (heparan
glucosaminyl) 4 isoform 1 [Canis familiaris].
Length = 872
Score = 84.7 bits (208), Expect = 1e-16
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 19/190 (10%)
Frame = +1
Query: 529 LPQTIIIGVRKGGTRALLEMLSLHPDVAA------AENEVHFFDWEEHYSQGLDWYLSQM 690
LP+ ++IG +K GT AL L +HP + + EV FF+ +Y +G+DWY+
Sbjct: 594 LPKFLVIGPQKTGTTALYLFLLMHPSIISNLPSPKTFEEVQFFNGN-NYHKGIDWYMDFF 652
Query: 691 PFSYPHQLT----VEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYN 858
P P +T EK+ YF S + P+R + P +++ IL DPS+R S +Y
Sbjct: 653 PT--PPNITSDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSDRAYS-----WYQ 705
Query: 859 HVQKHKPYPSIE----EFLVRDGRLNVDYKAPHR-----SLYHVHMQNWLRFFSAGRIHI 1011
H + H+ ++ E + + KA R Y VH++ WL +F+ ++ I
Sbjct: 706 HQRSHEDPAALRFNFYEVITTGHWAPSNLKALQRRCLVPGWYAVHIERWLTYFATSQLLI 765
Query: 1012 VDGDRLIRDP 1041
+DG +L DP
Sbjct: 766 IDGQQLRSDP 775
>ref|XP_545041.2| PREDICTED: similar to N-deacetylase/N-sulfotransferase (heparan
glucosaminyl) 3 isoform 1 [Canis familiaris].
Length = 873
Score = 83.6 bits (205), Expect = 3e-16
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 19/202 (9%)
Frame = +1
Query: 493 RDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAE------NEVHFFDWEEH 654
RD + + +LP+ ++IG +K GT AL L +HP + + EV FF+ +
Sbjct: 583 RDIWSKEKTCDRLPKFLVIGPQKTGTTALYLFLVMHPSIFSNSPSPKTFEEVQFFN-RNN 641
Query: 655 YSQGLDWYLSQMPFSYPHQLTV----EKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSE 822
Y +G+DWY+ P P +T EK+ YF S + P+R + P +++ IL DPS+
Sbjct: 642 YHRGIDWYMDFFPV--PSNVTTDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSD 699
Query: 823 RVLSDYTQVFYNHVQKHKPYPSIE----EFLVRDGRLNVDYKAPHR-----SLYHVHMQN 975
R S +Y H + H+ +++ E + R + +A + Y H++
Sbjct: 700 RAYS-----WYQHQRSHEDPAALKFSFYEVISAGPRAPSELRALQKRCLVPGWYASHIER 754
Query: 976 WLRFFSAGRIHIVDGDRLIRDP 1041
WL +F ++ I+DG +L DP
Sbjct: 755 WLVYFPPFQLLIIDGQQLRMDP 776
>ref|XP_851568.1| PREDICTED: similar to N-deacetylase/N-sulfotransferase (heparan
glucosaminyl) 3 isoform 2 [Canis familiaris].
Length = 873
Score = 83.6 bits (205), Expect = 3e-16
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 19/202 (9%)
Frame = +1
Query: 493 RDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAE------NEVHFFDWEEH 654
RD + + +LP+ ++IG +K GT AL L +HP + + EV FF+ +
Sbjct: 583 RDIWSKEKTCDRLPKFLVIGPQKTGTTALYLFLVMHPSIFSNSPSPKTFEEVQFFN-RNN 641
Query: 655 YSQGLDWYLSQMPFSYPHQLTV----EKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSE 822
Y +G+DWY+ P P +T EK+ YF S + P+R + P +++ IL DPS+
Sbjct: 642 YHRGIDWYMDFFPV--PSNVTTDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSD 699
Query: 823 RVLSDYTQVFYNHVQKHKPYPSIE----EFLVRDGRLNVDYKAPHR-----SLYHVHMQN 975
R S +Y H + H+ +++ E + R + +A + Y H++
Sbjct: 700 RAYS-----WYQHQRSHEDPAALKFSFYEVISAGPRAPSELRALQKRCLVPGWYASHIER 754
Query: 976 WLRFFSAGRIHIVDGDRLIRDP 1041
WL +F ++ I+DG +L DP
Sbjct: 755 WLVYFPPFQLLIIDGQQLRMDP 776
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,083,996
Number of extensions: 948329
Number of successful extensions: 5278
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5229
Number of HSP's successfully gapped: 14
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003574
(1048 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005105.1| heparan sulfate glucosamine 3-O-sulfotransferas... 379 e-105
Alignment gi|NP_705840.2| heparan sulfate glucosamine 3-O-sulfotransferas... 209 3e-54
Alignment gi|NP_006034.1| heparan sulfate glucosamine 3-O-sulfotransferas... 158 7e-39
Alignment gi|NP_006031.2| heparan sulfate glucosamine 3-O-sulfotransferas... 152 4e-37
Alignment gi|NP_006032.1| heparan sulfate glucosamine 3-O-sulfotransferas... 151 1e-36
Alignment gi|NP_001009606.2| heparan sulfate glucosamine 3-O-sulfotransfe... 147 2e-35
Alignment gi|NP_006033.1| heparan sulfate glucosamine 3-O-sulfotransferas... 145 6e-35
Alignment gi|NP_072091.1| bifunctional heparan sulfate N-deacetylase/N-su... 84 2e-16
Alignment gi|NP_004775.1| bifunctional heparan sulfate N-deacetylase/N-su... 84 2e-16
Alignment gi|NP_003626.1| bifunctional heparan sulfate N-deacetylase/N-su... 82 1e-15
>ref|NP_005105.1| heparan sulfate glucosamine 3-O-sulfotransferase 1 precursor [Homo
sapiens].
Length = 307
Score = 379 bits (973), Expect = e-105
Identities = 186/212 (87%), Positives = 192/212 (90%)
Frame = +1
Query: 412 PCRPAMPGAGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEML 591
P RPA G QQEL+RKA TLQD+VRD APNGS QQLPQTIIIGVRKGGTRALLEML
Sbjct: 19 PSRPAELG----QQELLRKAGTLQDDVRDGVAPNGSAQQLPQTIIIGVRKGGTRALLEML 74
Query: 592 SLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVH 771
SLHPDVAAAENEVHFFDWEEHYS GL WYLSQMPFS+PHQLTVEKTPAYFTSPKVPERV+
Sbjct: 75 SLHPDVAAAENEVHFFDWEEHYSHGLGWYLSQMPFSWPHQLTVEKTPAYFTSPKVPERVY 134
Query: 772 RMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVDYKAPHRS 951
MNPSIRLLLILRDPSERVLSDYTQVFYNH+QKHKPYPSIEEFLVRDGRLNVDYKA +RS
Sbjct: 135 SMNPSIRLLLILRDPSERVLSDYTQVFYNHMQKHKPYPSIEEFLVRDGRLNVDYKALNRS 194
Query: 952 LYHVHMQNWLRFFSAGRIHIVDGDRLIRDPIP 1047
LYHVHMQNWLRFF IHIVDGDRLIRDP P
Sbjct: 195 LYHVHMQNWLRFFPLRHIHIVDGDRLIRDPFP 226
>ref|NP_705840.2| heparan sulfate glucosamine 3-O-sulfotransferase 5 [Homo sapiens].
Length = 346
Score = 209 bits (533), Expect = 3e-54
Identities = 95/178 (53%), Positives = 132/178 (74%), Gaps = 2/178 (1%)
Frame = +1
Query: 520 VQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFS 699
VQQLP+ IIIGVRKGGTRALLEML+LHP V A E+HFFD +E+Y +G++WY +MPFS
Sbjct: 87 VQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDNDENYGKGIEWYRKKMPFS 146
Query: 700 YPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKP 879
YP Q+T+EK+PAYF + +VPER+++MN SI+LL+I+R+P+ R +SDYTQV +K+K
Sbjct: 147 YPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKT 206
Query: 880 YPSIEEFLVRDG--RLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDPIP 1047
Y E+ + +N YKA S+Y H++ WL++F + H+VDGDRLI +P+P
Sbjct: 207 YYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHVVDGDRLITEPLP 264
>ref|NP_006034.1| heparan sulfate glucosamine 3-O-sulfotransferase 2 [Homo sapiens].
Length = 367
Score = 158 bits (400), Expect = 7e-39
Identities = 84/217 (38%), Positives = 127/217 (58%), Gaps = 7/217 (3%)
Frame = +1
Query: 412 PCRPAMPG----AGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRAL 579
PC P+ P + PS A L S +P ++LPQ +I+GV+KGGTRA+
Sbjct: 72 PCDPSGPTPSEPSAPSAPAAAVPAPRLSGS-NHSGSPKLGTKRLPQALIVGVKKGGTRAV 130
Query: 580 LEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVP 759
LE + +HPDV A E HFFD +Y +GLDWY S MP + Q+T+EKTP+YF + + P
Sbjct: 131 LEFIRVHPDVRALGTEPHFFD--RNYGRGLDWYRSLMPRTLESQITLEKTPSYFVTQEAP 188
Query: 760 ERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNVD 930
R+ M+ +L++++R+P R +SDYTQ + K P+ E R+ G ++V
Sbjct: 189 RRIFNMSRDTKLIVVVRNPVTRAISDYTQT----LSKKPDIPTFEGLSFRNRTLGLVDVS 244
Query: 931 YKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+ A +Y +H+++WL++F +IH V G+RLI DP
Sbjct: 245 WNAIRIGMYVLHLESWLQYFPLAQIHFVSGERLITDP 281
>ref|NP_006031.2| heparan sulfate glucosamine 3-O-sulfotransferase 4 [Homo sapiens].
Length = 456
Score = 152 bits (385), Expect = 4e-37
Identities = 82/214 (38%), Positives = 128/214 (59%), Gaps = 4/214 (1%)
Frame = +1
Query: 412 PCRPAMPGAGPSQQELVRKAATLQDEVRDSAA-PNGSVQQLPQTIIIGVRKGGTRALLEM 588
P R A + + R+AA E + + P+ ++LPQ +IIGV+KGGTRALLE
Sbjct: 157 PEREAQESSTTDEDLAGRRAANGSSERGGAVSTPDYGEKKLPQALIIGVKKGGTRALLEA 216
Query: 589 LSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERV 768
+ +HPDV A E HFFD +Y +GL+WY + MP + Q+T+EKTP+YF + + P+R+
Sbjct: 217 IRVHPDVRAVGVEPHFFD--RNYEKGLEWYRNVMPKTLDGQITMEKTPSYFVTNEAPKRI 274
Query: 769 HRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNVDYKA 939
H M I+L++++R+P R +SDYTQ + K P+ E ++ G ++ + A
Sbjct: 275 HSMAKDIKLIVVVRNPVTRAISDYTQT----LSKKPEIPTFEVLAFKNRTLGLIDASWSA 330
Query: 940 PHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+Y +H++NWL++F +I V G+RLI DP
Sbjct: 331 IRIGIYALHLENWLQYFPLSQILFVSGERLIVDP 364
>ref|NP_006032.1| heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [Homo sapiens].
Length = 390
Score = 151 bits (381), Expect = 1e-36
Identities = 89/219 (40%), Positives = 127/219 (57%), Gaps = 12/219 (5%)
Frame = +1
Query: 421 PAMPGAGPSQQELVRKAATLQD---EVRDSAAPNGSV------QQLPQTIIIGVRKGGTR 573
PA P A S +E+ AA+ ++ EV DS +P S +QLPQ IIIGV+KGGTR
Sbjct: 94 PATPLA--SGKEMAEGAASPEEQSPEVPDSPSPISSFFSGSGSKQLPQAIIIGVKKGGTR 151
Query: 574 ALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPK 753
ALLE L +HPDV A E HFFD Y +GL WY MP + Q+T+EKTP+YF + +
Sbjct: 152 ALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTRE 209
Query: 754 VPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLN 924
P R+ M+ +L++++RDP R +SDYTQ + K P+ E ++ G ++
Sbjct: 210 APARISAMSKDTKLIVVVRDPVTRAISDYTQT----LSKRPDIPTFESLTFKNRTAGLID 265
Query: 925 VDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+ A +Y H+++WLR F ++ V G+RLI DP
Sbjct: 266 TSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDP 304
>ref|NP_001009606.2| heparan sulfate glucosamine 3-O-sulfotransferase 6 [Homo sapiens].
Length = 311
Score = 147 bits (371), Expect = 2e-35
Identities = 76/175 (43%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Frame = +1
Query: 523 QQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSY 702
++ PQ +I+GV+KGGTRALLE L LHPDV A +E HFFD Y +GL WY S MP +
Sbjct: 57 RRFPQALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFD--RCYERGLAWYRSLMPRTL 114
Query: 703 PHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPY 882
Q+T+EKTP+YF + + P R+H M+P +L++++R+P R +SDY Q + K
Sbjct: 115 DGQITMEKTPSYFVTREAPRRIHAMSPDTKLIVVVRNPVTRAISDYAQT----LSKTPGL 170
Query: 883 PSIEEFLVRDGRLNVD--YKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
PS R G VD + A LY H+ +WLR+F V G+RL+ DP
Sbjct: 171 PSFRALAFRHGLGPVDTAWSAVRIGLYAQHLDHWLRYFPLSHFLFVSGERLVSDP 225
>ref|NP_006033.1| heparan sulfate glucosamine 3-O-sulfotransferase 3A1 [Homo sapiens].
Length = 406
Score = 145 bits (366), Expect = 6e-35
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Frame = +1
Query: 523 QQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSY 702
+QLPQ IIIGV+KGGTRALLE L +HPDV A E HFFD Y +GL WY MP +
Sbjct: 150 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWYRDLMPRTL 207
Query: 703 PHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPY 882
Q+T+EKTP+YF + + P R+ M+ +L++++RDP R +SDYTQ + K
Sbjct: 208 DGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQT----LSKRPDI 263
Query: 883 PSIEEFLVRD---GRLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
P+ E ++ G ++ + A +Y H+++WLR F ++ V G+RLI DP
Sbjct: 264 PTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDP 319
>ref|NP_072091.1| bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [Homo
sapiens].
Length = 872
Score = 84.0 bits (206), Expect = 2e-16
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Frame = +1
Query: 529 LPQTIIIGVRKGGTRALLEMLSLHPDVAA------AENEVHFFDWEEHYSQGLDWYLS-- 684
LP+ ++IG +K GT AL L +HP + + EV FF+ +Y +G+DWY+
Sbjct: 594 LPKFLVIGPQKTGTTALYLFLLMHPSIISNLPSPKTFEEVQFFNGN-NYHKGIDWYMDFF 652
Query: 685 QMPFSYPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHV 864
P + EK+ YF S + P R + P +++ IL DPS+R S +Y H
Sbjct: 653 PTPSNTTSDFLFEKSANYFHSEEAPRRAASLVPKAKIITILIDPSDRAYS-----WYQHQ 707
Query: 865 QKHKPYPSIE----EFLVRDGRLNVDYKAPHR-----SLYHVHMQNWLRFFSAGRIHIVD 1017
+ H+ ++ E + D K R Y VH++ WL +F+ ++ I+D
Sbjct: 708 RSHEDPAALRFNFYEVISTGHWAPSDLKTLQRRCLVPGWYAVHIERWLTYFATSQLLIID 767
Query: 1018 GDRLIRDP 1041
G +L DP
Sbjct: 768 GQQLRSDP 775
>ref|NP_004775.1| bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 [Homo
sapiens].
Length = 873
Score = 84.0 bits (206), Expect = 2e-16
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 19/202 (9%)
Frame = +1
Query: 493 RDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAE------NEVHFFDWEEH 654
RD + + +LP+ ++IG +K GT AL L +HP + + EV FF+ +
Sbjct: 583 RDIWSKEKTCDRLPKFLVIGPQKTGTTALYLFLVMHPSILSNSPSPKTFEEVQFFN-RNN 641
Query: 655 YSQGLDWYLSQMPFSYPHQLTV----EKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSE 822
Y +G+DWY+ P P +T EK+ YF S + P+R + P +++ IL DPS+
Sbjct: 642 YHRGIDWYMDFFPV--PSNVTTDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSD 699
Query: 823 RVLSDYTQVFYNHVQKHKPYPSIE----EFLVRDGRLNVDYKAPHR-----SLYHVHMQN 975
R S +Y H + H+ +++ E + R + +A + Y H++
Sbjct: 700 RAYS-----WYQHQRSHEDPAALKFSFYEVISAGPRAPSELRALQKRCLVPGWYASHIER 754
Query: 976 WLRFFSAGRIHIVDGDRLIRDP 1041
WL +F ++ I+DG +L DP
Sbjct: 755 WLVYFPPFQLLIIDGQQLRTDP 776
>ref|NP_003626.1| bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 [Homo
sapiens].
Length = 883
Score = 81.6 bits (200), Expect = 1e-15
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 17/200 (8%)
Frame = +1
Query: 493 RDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAE------NEVHFFDWEEH 654
+D + + +LP+ +I+G +K GT A+ LSLHP V ++ E+ FF+ +
Sbjct: 591 KDIWSKEKTCDRLPKFLIVGPQKTGTTAIHFFLSLHPAVTSSFPSPSTFEEIQFFN-SPN 649
Query: 655 YSQGLDWYLS--QMPFSYPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERV 828
Y +G+DWY+ +P + EK+ YF S VP R + P +++ +L +P++R
Sbjct: 650 YHKGIDWYMDFFPVPSNASTDFLFEKSATYFDSEVVPRRGAALLPRAKIITVLTNPADRA 709
Query: 829 LSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVDYKAPHRSL---------YHVHMQNWL 981
S +Y H + H ++ + + RSL Y H+Q WL
Sbjct: 710 YS-----WYQHQRAHGDPVALNYTFYQVISASSQTPLALRSLQNRCLVPGYYSTHLQRWL 764
Query: 982 RFFSAGRIHIVDGDRLIRDP 1041
++ +G++ IVDG L +P
Sbjct: 765 TYYPSGQLLIVDGQELRTNP 784
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,214,554
Number of extensions: 920151
Number of successful extensions: 4607
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4571
Number of HSP's successfully gapped: 11
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003574
(1048 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034604.1| heparan sulfate glucosamine 3-O-sulfotransferas... 357 7e-99
Alignment gi|NP_001074677.1| heparan sulfate glucosamine 3-O-sulfotransfe... 210 1e-54
Alignment gi|NP_001074796.1| heparan sulfate glucosamine 3-O-sulfotransfe... 162 3e-40
Alignment gi|XP_898657.3| PREDICTED: heparan sulfate glucosamine 3-O-sulf... 155 4e-38
Alignment gi|XP_003086711.1| PREDICTED: heparan sulfate glucosamine 3-O-s... 155 4e-38
Alignment gi|NP_061275.2| heparan sulfate glucosamine 3-O-sulfotransferas... 152 5e-37
Alignment gi|NP_849201.1| heparan sulfate glucosamine 3-O-sulfotransferas... 149 3e-36
Alignment gi|NP_001012402.1| heparan sulfate glucosamine 3-O-sulfotransfe... 147 1e-35
Alignment gi|NP_072087.2| bifunctional heparan sulfate N-deacetylase/N-su... 85 8e-17
Alignment gi|NP_112463.2| bifunctional heparan sulfate N-deacetylase/N-su... 77 2e-14
>ref|NP_034604.1| heparan sulfate glucosamine 3-O-sulfotransferase 1 precursor [Mus
musculus].
Length = 311
Score = 357 bits (917), Expect = 7e-99
Identities = 170/209 (81%), Positives = 182/209 (87%)
Frame = +1
Query: 421 PAMPGAGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLH 600
PA PG G QQEL+RK L ++ + A NGS QQLPQTIIIGVRKGGTRALLEMLSLH
Sbjct: 22 PAAPGPGLKQQELLRKVIILPEDTGEGTASNGSTQQLPQTIIIGVRKGGTRALLEMLSLH 81
Query: 601 PDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVHRMN 780
PDVAAAENEVHFFDWEEHYSQGL WYL+QMPFS PHQLTVEKTPAYFTSPKVPER+H MN
Sbjct: 82 PDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTPAYFTSPKVPERIHSMN 141
Query: 781 PSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVDYKAPHRSLYH 960
P+IRLLLILRDPSERVLSDYTQV YNH+QKHKPYP IE+ L+RDGRLN+DYKA +RSLYH
Sbjct: 142 PTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGRLNLDYKALNRSLYH 201
Query: 961 VHMQNWLRFFSAGRIHIVDGDRLIRDPIP 1047
HM NWLRFF G IHIVDGDRLIRDP P
Sbjct: 202 AHMLNWLRFFPLGHIHIVDGDRLIRDPFP 230
>ref|NP_001074677.1| heparan sulfate glucosamine 3-O-sulfotransferase 5 [Mus musculus].
Length = 346
Score = 210 bits (535), Expect = 1e-54
Identities = 96/178 (53%), Positives = 133/178 (74%), Gaps = 2/178 (1%)
Frame = +1
Query: 520 VQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFS 699
VQQLP+ IIIGVRKGGTRALLEML+LHP V A E+HFFD +E+Y++G++WY +MPFS
Sbjct: 87 VQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDNDENYAKGIEWYRKKMPFS 146
Query: 700 YPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKP 879
YP Q+T+EK+PAYF + +VPER+++MN SI+LL+I+R+P+ R +SDYTQV +K+K
Sbjct: 147 YPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKT 206
Query: 880 YPSIEEFLVRDG--RLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDPIP 1047
Y E+ + +N YKA S+Y H++ WL++F + HIVDGDRLI +P+P
Sbjct: 207 YYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHIVDGDRLITEPLP 264
>ref|NP_001074796.1| heparan sulfate glucosamine 3-O-sulfotransferase 2 [Mus musculus].
Length = 367
Score = 162 bits (411), Expect = 3e-40
Identities = 86/218 (39%), Positives = 127/218 (58%), Gaps = 8/218 (3%)
Frame = +1
Query: 412 PCRPAMPGAGPSQQELVRKAATLQDEVR-----DSAAPNGSVQQLPQTIIIGVRKGGTRA 576
PC P PG PS+ A R S +P ++LPQ +I+GV+KGGTRA
Sbjct: 72 PCDP--PGPTPSEPSAPSAPAAAAPAPRLSGSNHSGSPKPGTKRLPQALIVGVKKGGTRA 129
Query: 577 LLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKV 756
+LE + +HPDV A E HFFD +Y +GLDWY S MP + Q+T+EKTP+YF + +
Sbjct: 130 VLEFIRVHPDVRALGTEPHFFD--RNYGRGLDWYRSLMPRTLETQITLEKTPSYFVTQEA 187
Query: 757 PERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNV 927
P R+ M+ +L++++R+P R +SDYTQ + K P+ E R+ G ++V
Sbjct: 188 PRRIFNMSRDTKLIVVVRNPVTRAISDYTQT----LSKKPDIPTFEGLSFRNRSLGLVDV 243
Query: 928 DYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+ A +Y +H+++WLR+F +IH V G+RLI DP
Sbjct: 244 SWNAIRIGMYALHLESWLRYFPLAQIHFVSGERLITDP 281
>ref|XP_898657.3| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 4 [Mus
musculus].
Length = 449
Score = 155 bits (393), Expect = 4e-38
Identities = 80/204 (39%), Positives = 127/204 (62%), Gaps = 3/204 (1%)
Frame = +1
Query: 439 GPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAA 618
G +++ R+AA E ++ P+ ++LPQ +IIGV+KGGTRALLE + +HPDV A
Sbjct: 160 GAAEELEGRRAANGSAERGPASTPDYGEKKLPQALIIGVKKGGTRALLEAIRVHPDVRAV 219
Query: 619 ENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLL 798
E HFFD +Y +GL+WY + MP + Q+T+EKTP+YF + + P+R+H M I+L+
Sbjct: 220 GVEPHFFD--RNYEKGLEWYRNVMPKTLDGQITMEKTPSYFVTNEAPKRIHSMAKDIKLI 277
Query: 799 LILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNVDYKAPHRSLYHVHM 969
+++R+P R +SDYTQ + K P+ E ++ G ++ + A +Y +H+
Sbjct: 278 VVVRNPVTRAISDYTQT----LSKKPEIPTFEVLAFKNRTLGLIDASWSAIRIGIYALHL 333
Query: 970 QNWLRFFSAGRIHIVDGDRLIRDP 1041
+NWL++F +I V G+RLI DP
Sbjct: 334 ENWLQYFPLSQILFVSGERLIVDP 357
>ref|XP_003086711.1| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 4 [Mus
musculus].
Length = 338
Score = 155 bits (393), Expect = 4e-38
Identities = 80/204 (39%), Positives = 127/204 (62%), Gaps = 3/204 (1%)
Frame = +1
Query: 439 GPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAA 618
G +++ R+AA E ++ P+ ++LPQ +IIGV+KGGTRALLE + +HPDV A
Sbjct: 49 GAAEELEGRRAANGSAERGPASTPDYGEKKLPQALIIGVKKGGTRALLEAIRVHPDVRAV 108
Query: 619 ENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLL 798
E HFFD +Y +GL+WY + MP + Q+T+EKTP+YF + + P+R+H M I+L+
Sbjct: 109 GVEPHFFD--RNYEKGLEWYRNVMPKTLDGQITMEKTPSYFVTNEAPKRIHSMAKDIKLI 166
Query: 799 LILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNVDYKAPHRSLYHVHM 969
+++R+P R +SDYTQ + K P+ E ++ G ++ + A +Y +H+
Sbjct: 167 VVVRNPVTRAISDYTQT----LSKKPEIPTFEVLAFKNRTLGLIDASWSAIRIGIYALHL 222
Query: 970 QNWLRFFSAGRIHIVDGDRLIRDP 1041
+NWL++F +I V G+RLI DP
Sbjct: 223 ENWLQYFPLSQILFVSGERLIVDP 246
>ref|NP_061275.2| heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [Mus musculus].
Length = 390
Score = 152 bits (383), Expect = 5e-37
Identities = 87/206 (42%), Positives = 120/206 (58%), Gaps = 3/206 (1%)
Frame = +1
Query: 433 GAGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVA 612
GAG SQ+E +A + + GS +QLPQ IIIGV+KGGTRALLE L +HPDV
Sbjct: 107 GAG-SQEEQSPEAPDSPSPISSFFSGAGS-KQLPQAIIIGVKKGGTRALLEFLRVHPDVR 164
Query: 613 AAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVHRMNPSIR 792
A E HFFD Y +GL WY MP + Q+T+EKTP+YF + + P R+ M+ +
Sbjct: 165 AVGAEPHFFD--RSYHKGLAWYRDLMPRTLKGQITMEKTPSYFVTREAPARISAMSKDTK 222
Query: 793 LLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNVDYKAPHRSLYHV 963
L++++RDP R +SDYTQ + K PS E R+ G ++ + A LY
Sbjct: 223 LIVVVRDPVTRAISDYTQT----LSKRPDIPSFESLTFRNRSAGLIDTSWSAIQIGLYAK 278
Query: 964 HMQNWLRFFSAGRIHIVDGDRLIRDP 1041
H++ WLR F G++ V G+RL+ DP
Sbjct: 279 HLEPWLRHFPLGQMLFVSGERLVSDP 304
>ref|NP_849201.1| heparan sulfate glucosamine 3-O-sulfotransferase 3A1 [Mus musculus].
Length = 393
Score = 149 bits (377), Expect = 3e-36
Identities = 78/176 (44%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Frame = +1
Query: 523 QQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSY 702
+QLPQ IIIGV+KGGTRALLE L +HPDV A E HFFD Y +GL WY MP +
Sbjct: 137 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFD--RSYHKGLAWYRDLMPRTL 194
Query: 703 PHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPY 882
Q+T+EKTP+YF + + P R+ M+ +L++++RDP R +SDYTQ + K
Sbjct: 195 EGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQT----LSKRPDI 250
Query: 883 PSIEEFLVRD---GRLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
PS E R+ G ++ + A LY H++ WLR F G++ V G+RL+ DP
Sbjct: 251 PSFESLTFRNRSAGLIDTSWSAIQIGLYAKHLEPWLRHFPLGQMLFVSGERLVSDP 306
>ref|NP_001012402.1| heparan sulfate glucosamine 3-O-sulfotransferase 6 [Mus musculus].
Length = 342
Score = 147 bits (372), Expect = 1e-35
Identities = 76/175 (43%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
Frame = +1
Query: 523 QQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSY 702
++ PQ +I+GV+KGGTRALLE L LHPDV A +E HFFD Y +GL WY MP +
Sbjct: 88 RRFPQALIVGVKKGGTRALLEFLRLHPDVRALGSEPHFFD--RCYDRGLAWYRGLMPRTL 145
Query: 703 PHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPY 882
Q+T+EKTP+YF + + P R+H M+P +L++++R+P R +SDY Q + K
Sbjct: 146 DGQITMEKTPSYFVTQEAPRRIHGMSPDTKLIVVVRNPVTRAISDYAQT----LSKTPGL 201
Query: 883 PSIEEFLVRDGRLNVD--YKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
PS R G VD + A LY H+ NWLR+F V G+RL+ DP
Sbjct: 202 PSFRALAFRHGLGPVDTAWSAVRIGLYAQHLDNWLRYFPLSHFLFVSGERLVSDP 256
>ref|NP_072087.2| bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [Mus
musculus].
Length = 872
Score = 85.1 bits (209), Expect = 8e-17
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Frame = +1
Query: 529 LPQTIIIGVRKGGTRALLEMLSLHPDVAA------AENEVHFFDWEEHYSQGLDWYLSQM 690
LP+ ++IG +K GT AL L +HP + + EV FF+ +Y +G++WY+
Sbjct: 594 LPKFLVIGPQKTGTTALYLFLLMHPSIISNLPSPKTFEEVQFFNGN-NYHKGIEWYMDFF 652
Query: 691 PFSYPHQLT----VEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYN 858
P P +T EK+ YF S + P+R + P +++ IL DPS+R S +Y
Sbjct: 653 PT--PSNITSDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSDRAYS-----WYQ 705
Query: 859 HVQKHKPYPSIE----EFLVRDGRLNVDYKAPHRSL-----YHVHMQNWLRFFSAGRIHI 1011
H + H+ ++ E + D K R Y VH++ WL +FS ++ I
Sbjct: 706 HQRSHEDPAALRFNFYEVITTGHWAPPDLKTLQRRCLVPGWYAVHIERWLAYFSTSQLLI 765
Query: 1012 VDGDRLIRDP 1041
+DG +L DP
Sbjct: 766 IDGQQLRSDP 775
>ref|NP_112463.2| bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 [Mus
musculus].
Length = 873
Score = 77.4 bits (189), Expect = 2e-14
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 21/204 (10%)
Frame = +1
Query: 493 RDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAE------NEVHFFDWEEH 654
RD + + +LP+ ++IG +K GT AL L +HP + + EV FF+ +
Sbjct: 583 RDIWSKEKTCDRLPKFLVIGPQKTGTTALCLFLIMHPSILSNSPSPKSFEEVQFFN-RNN 641
Query: 655 YSQGLDWYLSQMPFSYPHQLTV----EKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSE 822
Y +G+DWY+ P P +T EK+ YF S P+R + P +++ IL DPS+
Sbjct: 642 YHRGIDWYMDFFPV--PSNVTTDFLFEKSANYFHSEDAPKRAASLVPKAKIITILIDPSD 699
Query: 823 RVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVDYKAPH--RSL---------YHVHM 969
R S +Y H + H+ P+ +F + ++ AP R+L Y H+
Sbjct: 700 RAYS-----WYQHQRSHED-PAALKFSFYE-VISAGPNAPWELRTLQKRCLVPGWYANHI 752
Query: 970 QNWLRFFSAGRIHIVDGDRLIRDP 1041
+ WL +F ++ I+DG +L P
Sbjct: 753 ERWLVYFPPFQLLIIDGQQLRTTP 776
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,579,830
Number of extensions: 756319
Number of successful extensions: 3689
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3652
Number of HSP's successfully gapped: 12
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003574
(1048 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361717.1| PREDICTED: heparan sulfate glucosamine 3-O-s... 414 e-116
Alignment gi|XP_001928006.1| PREDICTED: heparan sulfate glucosamine 3-O-s... 211 4e-55
Alignment gi|XP_003124592.1| PREDICTED: heparan sulfate glucosamine 3-O-s... 162 4e-40
Alignment gi|XP_003132059.1| PREDICTED: heparan sulfate glucosamine 3-O-s... 149 2e-36
Alignment gi|XP_003132064.1| PREDICTED: heparan sulfate glucosamine 3-O-s... 87 2e-17
Alignment gi|XP_003129284.2| PREDICTED: bifunctional heparan sulfate N-de... 86 4e-17
Alignment gi|XP_003129276.2| PREDICTED: bifunctional heparan sulfate N-de... 84 1e-16
Alignment gi|XP_003354616.1| PREDICTED: heparan sulfate glucosamine 3-O-s... 82 5e-16
Alignment gi|XP_003124580.2| PREDICTED: heparan sulfate glucosamine 3-O-s... 70 2e-12
Alignment gi|XP_003358346.1| PREDICTED: heparan sulfate glucosamine 3-O-s... 69 4e-12
>ref|XP_003361717.1| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 1-like
[Sus scrofa].
Length = 311
Score = 414 bits (1063), Expect = e-116
Identities = 200/212 (94%), Positives = 201/212 (94%)
Frame = +1
Query: 412 PCRPAMPGAGPSQQELVRKAATLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEML 591
PCRPAMPGAGPSQQE TLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEML
Sbjct: 19 PCRPAMPGAGPSQQEXXXXXXTLQDEVRDSAAPNGSVQQLPQTIIIGVRKGGTRALLEML 78
Query: 592 SLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVH 771
SLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVH
Sbjct: 79 SLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKVPERVH 138
Query: 772 RMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVDYKAPHRS 951
RMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVDYKA +RS
Sbjct: 139 RMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRDGRLNVDYKALNRS 198
Query: 952 LYHVHMQNWLRFFSAGRIHIVDGDRLIRDPIP 1047
LYHVHMQNWLRFF RIHIVDGDRLIRDP P
Sbjct: 199 LYHVHMQNWLRFFPLRRIHIVDGDRLIRDPFP 230
>ref|XP_001928006.1| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 5 [Sus
scrofa].
Length = 345
Score = 211 bits (538), Expect = 4e-55
Identities = 97/178 (54%), Positives = 133/178 (74%), Gaps = 2/178 (1%)
Frame = +1
Query: 520 VQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFS 699
VQQLP+ IIIGVRKGGTRALLEML+LHP V A E+HFFD +E+Y++G++WY +MPFS
Sbjct: 86 VQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDNDENYAKGIEWYRKKMPFS 145
Query: 700 YPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKP 879
YP Q+T+EK+PAYF + +VPER++RMN SI+LL+I+R+P+ R +SDYTQV +K+K
Sbjct: 146 YPQQITIEKSPAYFITEEVPERIYRMNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKT 205
Query: 880 YPSIEEFLVRDG--RLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDPIP 1047
Y E+ + +N YKA S+Y H++ WL++F + HIVDGDRLI +P+P
Sbjct: 206 YYKFEKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHIVDGDRLIAEPLP 263
>ref|XP_003124592.1| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 2 [Sus
scrofa].
Length = 367
Score = 162 bits (409), Expect = 4e-40
Identities = 85/218 (38%), Positives = 126/218 (57%), Gaps = 8/218 (3%)
Frame = +1
Query: 412 PCRPAMPGAGPSQQELVRKAATLQDE-----VRDSAAPNGSVQQLPQTIIIGVRKGGTRA 576
PC P PG PS+ A V S +P ++LPQ +I+GV+KGGTRA
Sbjct: 72 PCDP--PGPTPSEPSAASAPAAAAPASRLSGVNHSGSPKLGTKRLPQALIVGVKKGGTRA 129
Query: 577 LLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSYPHQLTVEKTPAYFTSPKV 756
+LE + +HPDV A E HFFD +Y +GLDWY S MP + Q+T+EKTP+YF + +
Sbjct: 130 VLEFIRVHPDVRALGTEPHFFD--RNYGRGLDWYRSLMPRTLESQITLEKTPSYFVTQEA 187
Query: 757 PERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEEFLVRD---GRLNV 927
P R+ M+ +L++++R+P R +SDYTQ + K P+ E R+ G ++
Sbjct: 188 PRRIFNMSRDTKLIVVVRNPVTRAISDYTQT----LSKKPDIPTFEGLSFRNRTLGLVDA 243
Query: 928 DYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
+ A +Y +H+++WLR+F +IH V G+RLI DP
Sbjct: 244 SWNAIRIGMYALHLESWLRYFPLAQIHFVSGERLITDP 281
>ref|XP_003132059.1| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 3A1 [Sus
scrofa].
Length = 406
Score = 149 bits (377), Expect = 2e-36
Identities = 78/176 (44%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Frame = +1
Query: 523 QQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWYLSQMPFSY 702
+QLPQ IIIGV+KGGTRALLE L +HPDV A E HFFD Y +GL WY MP +
Sbjct: 150 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWYRDLMPRTL 207
Query: 703 PHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPY 882
Q+T+EKTP+YF + + P R+ M+ + +L++++RDP R +SDYTQ + K
Sbjct: 208 DGQITMEKTPSYFVTREAPARISAMSKATKLIVVVRDPVTRAVSDYTQT----LSKRPDI 263
Query: 883 PSIEEFLVRD---GRLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
P+ E R+ G ++ + A LY H+++WLR F ++ V G+RLIRDP
Sbjct: 264 PTFESLTFRNRSAGLIDTSWSAIQIGLYAKHLEHWLRHFPLRQMLFVSGERLIRDP 319
>ref|XP_003132064.1| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 3A1-like
[Sus scrofa].
Length = 227
Score = 87.0 bits (214), Expect = 2e-17
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Frame = +1
Query: 688 MPFSYPHQLTVEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQ 867
MP + Q+T+EKTP+YF + + P R+ M+ + +L++++RDP R +SDYTQ +
Sbjct: 25 MPRTLDGQITMEKTPSYFVTREAPARISAMSKATKLIVVVRDPVTRAVSDYTQT----LS 80
Query: 868 KHKPYPSIEEFLVRD---GRLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRD 1038
K P+ E R+ G ++ + A LY H+++WLR F ++ V G+RLIRD
Sbjct: 81 KRPDIPTFESLTFRNRSAGLIDTSWSAIQIGLYAKHLEHWLRHFPLRQMLFVSGERLIRD 140
Query: 1039 P 1041
P
Sbjct: 141 P 141
>ref|XP_003129284.2| PREDICTED: bifunctional heparan sulfate
N-deacetylase/N-sulfotransferase 4, partial [Sus scrofa].
Length = 465
Score = 85.5 bits (210), Expect = 4e-17
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Frame = +1
Query: 529 LPQTIIIGVRKGGTRALLEMLSLHPDVAA------AENEVHFFDWEEHYSQGLDWYLSQM 690
LP+ ++IG +K GT AL L +HP + + EV FF+ +Y +G+DWY+
Sbjct: 187 LPKFLVIGPQKTGTTALYLFLLMHPSIISNLPSPKTFEEVQFFNGN-NYHKGIDWYMDFF 245
Query: 691 PFSYPHQLT----VEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYN 858
P P +T EK+ YF S + P+R + P +++ IL DPS+R S +Y
Sbjct: 246 PT--PSNITSDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSDRAYS-----WYQ 298
Query: 859 HVQKHKPYPSIE----EFLVRDGRLNVDYKAPHR-----SLYHVHMQNWLRFFSAGRIHI 1011
H + H+ ++ E + D K R Y VH++ WL +F+ ++ I
Sbjct: 299 HQRSHEDPAALRFNFYEVITTGHWAPSDLKTLQRRCLVPGWYAVHIERWLTYFATSQLLI 358
Query: 1012 VDGDRLIRDP 1041
+DG +L DP
Sbjct: 359 IDGQQLRSDP 368
>ref|XP_003129276.2| PREDICTED: bifunctional heparan sulfate
N-deacetylase/N-sulfotransferase 3 [Sus scrofa].
Length = 887
Score = 84.0 bits (206), Expect = 1e-16
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 19/202 (9%)
Frame = +1
Query: 493 RDSAAPNGSVQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAE------NEVHFFDWEEH 654
RD + + +LP+ ++IG +K GT AL L +HP + + EV FF+ +
Sbjct: 597 RDIWSKEKTCDRLPKFLVIGPQKTGTTALYLFLVMHPSILSNSPSPKTFEEVQFFN-RNN 655
Query: 655 YSQGLDWYLSQMPFSYPHQLTV----EKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSE 822
Y +G+DWY+ P P +T EK+ YF S + P+R + P +++ IL DPS+
Sbjct: 656 YHRGIDWYMDFFPV--PSNVTTDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSD 713
Query: 823 RVLSDYTQVFYNHVQKHKPYPSIE----EFLVRDGRLNVDYKAPHR-----SLYHVHMQN 975
R S +Y H + H+ +++ E + R + +A + Y H++
Sbjct: 714 RAYS-----WYQHQRSHEDPAALKFSFYEVISAGPRAPSELRALQKRCLVPGWYASHIER 768
Query: 976 WLRFFSAGRIHIVDGDRLIRDP 1041
WL +F ++ I+DG +L DP
Sbjct: 769 WLVYFPPFQLLIIDGQQLRTDP 790
>ref|XP_003354616.1| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 4-like
[Sus scrofa].
Length = 199
Score = 82.0 bits (201), Expect = 5e-16
Identities = 39/111 (35%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 718 VEKTPAYFTSPKVPERVHRMNPSIRLLLILRDPSERVLSDYTQVFYNHVQKHKPYPSIEE 897
+EKTP+YF + + P+R+H M I+L++++R+P R +SDYTQ + K P+ E
Sbjct: 1 MEKTPSYFVTNEAPKRIHSMAKDIKLIVVVRNPVTRAISDYTQT----LSKKPEIPTFEV 56
Query: 898 FLVRD---GRLNVDYKAPHRSLYHVHMQNWLRFFSAGRIHIVDGDRLIRDP 1041
++ G ++ + A +Y +H++NWL++F +I V G+RLI DP
Sbjct: 57 LAFKNRTLGLIDASWSAIRIGIYALHLENWLQYFPLSQILFVSGERLIVDP 107
>ref|XP_003124580.2| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase 4 [Sus
scrofa].
Length = 336
Score = 70.1 bits (170), Expect = 2e-12
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 18/104 (17%)
Frame = +1
Query: 421 PAMPGAGPSQQELV-----RKAATLQDEVRDSAAPNGSVQQ-------------LPQTII 546
P PG + Q + ++++T +E+ A NGS ++ LPQ +I
Sbjct: 143 PLAPGEMVTAQSALLEREAQESSTTDEELAGRRAANGSSERGGAVSTPDYGEKKLPQALI 202
Query: 547 IGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWY 678
IGV+KGGTRALLE + +HPDV A E HFFD +Y +GL+WY
Sbjct: 203 IGVKKGGTRALLEAIRVHPDVRAVGVEPHFFD--RNYEKGLEWY 244
>ref|XP_003358346.1| PREDICTED: heparan sulfate glucosamine 3-O-sulfotransferase
3A1-like [Sus scrofa].
Length = 200
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/52 (65%), Positives = 38/52 (73%)
Frame = +1
Query: 523 QQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLDWY 678
+QLPQ IIIGV+KGGTRALLE L +HPDV A E HFFD Y +GL WY
Sbjct: 150 KQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFD--RSYDKGLAWY 199
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,366,401
Number of extensions: 597006
Number of successful extensions: 3262
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3239
Number of HSP's successfully gapped: 10
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003574
(1048 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118868.1| Sus scrofa unplaced genomic scaffold ChrUScaf3020 1053 0.0
Sscrofa_Chr08 468 e-129
Sscrofa_Chr12 60 3e-06
>gb|JH118868.1| Sus scrofa unplaced genomic scaffold ChrUScaf3020
Length = 414758
Score = 1053 bits (531), Expect = 0.0
Identities = 566/575 (98%), Gaps = 2/575 (0%)
Strand = Plus / Minus
Query: 475 accctccaggatgaggtccgggacagcgcggcccccaacggctccgtccagcagctgccg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140981 accctccaggatgaggtccgggacagcgcggcccccaacggctccgtccagcagctgccg 140922
Query: 535 cagaccatcatcatcggcgtgcgcaagggcgggacccgcgcgctgctggagatgctcagc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140921 cagaccatcatcatcggcgtgcgcaagggcgggacccgcgcgctgctggagatgctcagc 140862
Query: 595 ctgcatcccgacgtggctgctgcggagaacgaggtgcacttcttcgactgggaggagcat 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140861 ctgcatcccgacgtggctgctgcggagaacgaggtgcacttcttcgactgggaggagcat 140802
Query: 655 tacagccaaggcctggactggtacctcagccagatgcccttctcctacccgcaccagctc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140801 tacagccaaggcctggactggtacctcagccagatgcccttctcctacccgcaccagctc 140742
Query: 715 acggttgaaaagacccccgcgtacttcacgtcgcccaaagtgcctgagcgggtccaccgc 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140741 acggttgaaaagacccccgcgtacttcacgtcgcccaaagtgcctgagcgggtccaccgc 140682
Query: 775 atgaacccgtccatccggctgctgctcatcctgcgggacccgtcggagcgcgtgctgtcc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140681 atgaacccgtccatccggctgctgctcatcctgcgggacccgtcggagcgcgtgctgtcc 140622
Query: 835 gactacacccaagtgttctacaaccacgtgcagaagcacaagccctacccgtccatcgag 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140621 gactacacccaagtgttctacaaccacgtgcagaagcacaagccctacccgtccatcgag 140562
Query: 895 gagttcctggtgcgcgacggccgcctcaacgtggactacaaggcccctcatcgaagcctg 954
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 140561 gagttcctggtgcgcgacggccgcctcaacgtggactacaaggccctcaaccgaagcctg 140502
Query: 955 taccacgtgcacatgcagaactggctgcgcttcttttccgc-gggccgcatccacatcgt 1013
||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||||
Sbjct: 140501 taccacgtgcacatgcagaactggctgcgcttc-ttcccgctgcgccgcatccacatcgt 140443
Query: 1014 ggatggcgaccgcctcatcagggaccctattcctg 1048
|||||||||||||||||||||||||||| ||||||
Sbjct: 140442 ggatggcgaccgcctcatcagggacccttttcctg 140408
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 355 agcatggccgcgctgctcctgggcgcggtgatgctggtccttcagctccagctggtgcct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141183 agcatggccgcgctgctcctgggcgcggtgatgctggtccttcagctccagctggtgcct 141124
Query: 415 tgccgccccgccatgcccggggccgggccgagccagcaggag 456
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141123 tgccgccccgccatgcccggggccgggccgagccagcaggag 141082
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 248 agtaatcagaggcccgtgacacccatgagtcactgatctggaggcatcccctgcgcagcg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141346 agtaatcagaggcccgtgacacccatgagtcactgatctggaggcatcccctgcgcagcg 141287
Query: 308 ctt 310
|||
Sbjct: 141286 ctt 141284
>Sscrofa_Chr08
|| Length = 148491826
Score = 468 bits (236), Expect = e-129
Identities = 236/236 (100%)
Strand = Plus / Plus
Query: 14 agcgggtctgatcgcctagtctccagcctgcaaagtccccggcgcgccggcagccaagaa 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6756565 agcgggtctgatcgcctagtctccagcctgcaaagtccccggcgcgccggcagccaagaa 6756624
Query: 74 ccgccgccactgccactgccgggtctcagtgggtgcctgcaccgctgcctcacccgcctg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6756625 ccgccgccactgccactgccgggtctcagtgggtgcctgcaccgctgcctcacccgcctg 6756684
Query: 134 cccggggttgtcccgaggcttgctccgccggccgctggtgctccaaggcactgcccatgg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6756685 cccggggttgtcccgaggcttgctccgccggccgctggtgctccaaggcactgcccatgg 6756744
Query: 194 cccagcccgagaggcgacttcgggtgcctgaccggctggatcgtagcgccgctcag 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6756745 cccagcccgagaggcgacttcgggtgcctgaccggctggatcgtagcgccgctcag 6756800
>Sscrofa_Chr12
|| Length = 63588571
Score = 60.0 bits (30), Expect = 3e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 524 agcagctgccgcagaccatcatcatcggcgtgcgcaagggcgggacccgcgcgctgct 581
|||||||||||||| ||||||||||||||||| |||||||| || || ||||||||
Sbjct: 60647767 agcagctgccgcaggccatcatcatcggcgtgaagaagggcggcacgcgggcgctgct 60647710
Score = 60.0 bits (30), Expect = 3e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 524 agcagctgccgcagaccatcatcatcggcgtgcgcaagggcgggacccgcgcgctgct 581
|||||||||||||| ||||||||||||||||| |||||||| || || ||||||||
Sbjct: 61094230 agcagctgccgcaggccatcatcatcggcgtgaagaagggcggcacgcgggcgctgct 61094287
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,081,062
Number of extensions: 80
Number of successful extensions: 80
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 6
Length of query: 1048
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1027
Effective length of database: 2,808,413,156
Effective search space: 2884240311212
Effective search space used: 2884240311212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)