Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003576
(419 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698102.1| PREDICTED: similar to BolA-like protein 2 [B... 169 6e-43
Alignment gi|XP_872694.1| PREDICTED: similar to BolA-like protein 2 isofo... 169 6e-43
Alignment gi|NP_001029524.1| bolA-like protein 1 [Bos taurus]. 57 4e-09
>ref|XP_002698102.1| PREDICTED: similar to BolA-like protein 2 [Bos taurus].
Length = 86
Score = 169 bits (429), Expect = 6e-43
Identities = 83/86 (96%), Positives = 85/86 (98%)
Frame = +2
Query: 83 MELSADYLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL 262
MELSA+YLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL
Sbjct: 1 MELSAEYLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL 60
Query: 263 SEELPHIHAFEQKTLTPEQWAREQQK 340
+EEL HIHAFEQKTLTPEQWAREQQK
Sbjct: 61 AEELLHIHAFEQKTLTPEQWAREQQK 86
>ref|XP_872694.1| PREDICTED: similar to BolA-like protein 2 isoform 1 [Bos taurus].
Length = 86
Score = 169 bits (429), Expect = 6e-43
Identities = 83/86 (96%), Positives = 85/86 (98%)
Frame = +2
Query: 83 MELSADYLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL 262
MELSA+YLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL
Sbjct: 1 MELSAEYLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL 60
Query: 263 SEELPHIHAFEQKTLTPEQWAREQQK 340
+EEL HIHAFEQKTLTPEQWAREQQK
Sbjct: 61 AEELLHIHAFEQKTLTPEQWAREQQK 86
>ref|NP_001029524.1| bolA-like protein 1 [Bos taurus].
Length = 135
Score = 57.4 bits (137), Expect = 4e-09
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Frame = +2
Query: 104 LREKLQRDLEAEHVEVEDTT-----PNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCLSE 268
+R KL++ L E +E+ + + P + FRV VVS++FEG LQRHRLV+ LSE
Sbjct: 36 IRTKLEQALNPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVHAALSE 95
Query: 269 ELP-HIHAFEQKTLTPEQWAREQQ 337
EL +HA + TP QW Q
Sbjct: 96 ELAGPVHALAIQARTPAQWKENPQ 119
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 16,274,124
Number of extensions: 515806
Number of successful extensions: 3559
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3478
Number of HSP's successfully gapped: 3
Length of query: 139
Length of database: 17,681,374
Length adjustment: 92
Effective length of query: 47
Effective length of database: 14,637,278
Effective search space: 687952066
Effective search space used: 687952066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003576
(419 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849783.1| PREDICTED: similar to BolA-like protein My016 [... 168 2e-42
Alignment gi|XP_533041.1| PREDICTED: similar to bolA-like 1 isoform 1 [Ca... 60 7e-10
Alignment gi|XP_849759.1| PREDICTED: similar to bolA-like 1 isoform 3 [Ca... 60 7e-10
>ref|XP_849783.1| PREDICTED: similar to BolA-like protein My016 [Canis familiaris].
Length = 86
Score = 168 bits (425), Expect = 2e-42
Identities = 82/86 (95%), Positives = 85/86 (98%)
Frame = +2
Query: 83 MELSADYLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL 262
MELSA+YLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL
Sbjct: 1 MELSAEYLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL 60
Query: 263 SEELPHIHAFEQKTLTPEQWAREQQK 340
+EEL HIHAFEQKTLTPEQWARE+QK
Sbjct: 61 AEELLHIHAFEQKTLTPEQWARERQK 86
>ref|XP_533041.1| PREDICTED: similar to bolA-like 1 isoform 1 [Canis familiaris].
Length = 137
Score = 60.1 bits (144), Expect = 7e-10
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Frame = +2
Query: 104 LREKLQRDLEAEHVEVEDTT-----PNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCLSE 268
+R KL++ L E +E+ + + P + FRV VVS++FEG LQRHRLV+ LSE
Sbjct: 36 IRTKLEQALNPEVLELRNESDAHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVHAALSE 95
Query: 269 ELP-HIHAFEQKTLTPEQWAREQQ 337
EL +HA +T TP QW Q
Sbjct: 96 ELAGRVHALAIQTRTPAQWKENPQ 119
>ref|XP_849759.1| PREDICTED: similar to bolA-like 1 isoform 3 [Canis familiaris].
Length = 137
Score = 60.1 bits (144), Expect = 7e-10
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Frame = +2
Query: 104 LREKLQRDLEAEHVEVEDTT-----PNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCLSE 268
+R KL++ L E +E+ + + P + FRV VVS++FEG LQRHRLV+ LSE
Sbjct: 36 IRTKLEQALNPEVLELRNESDAHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVHAALSE 95
Query: 269 ELP-HIHAFEQKTLTPEQWAREQQ 337
EL +HA +T TP QW Q
Sbjct: 96 ELAGRVHALAIQTRTPAQWKENPQ 119
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 16,790,858
Number of extensions: 499721
Number of successful extensions: 3776
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3649
Number of HSP's successfully gapped: 3
Length of query: 139
Length of database: 18,874,504
Length adjustment: 92
Effective length of query: 47
Effective length of database: 15,807,592
Effective search space: 742956824
Effective search space used: 742956824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003576
(419 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034271.1| bolA-like protein 2 [Homo sapiens]. 188 1e-48
Alignment gi|NP_001026997.1| BolA-like protein 2 [Homo sapiens]. 188 1e-48
Alignment gi|NP_057158.1| bolA-like protein 1 [Homo sapiens]. 56 1e-08
>ref|NP_001034271.1| bolA-like protein 2 [Homo sapiens].
Length = 152
Score = 188 bits (478), Expect = 1e-48
Identities = 93/108 (86%), Positives = 98/108 (90%)
Frame = +2
Query: 17 SVAGVRAGVPSPLGCCPRWAAAMELSADYLREKLQRDLEAEHVEVEDTTPNRCASSFRVL 196
SVAG RAGV S LGC W AAMELSA+YLREKLQRDLEAEHVEVEDTT NRC+ SFRVL
Sbjct: 45 SVAGARAGVVSLLGCRSSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVL 104
Query: 197 VVSAKFEGKPLLQRHRLVNTCLSEELPHIHAFEQKTLTPEQWAREQQK 340
VVSAKFEGKPLLQRHRLVN CL+EELPHIHAFEQKTLTP+QWARE+QK
Sbjct: 105 VVSAKFEGKPLLQRHRLVNACLAEELPHIHAFEQKTLTPDQWARERQK 152
>ref|NP_001026997.1| BolA-like protein 2 [Homo sapiens].
Length = 152
Score = 188 bits (478), Expect = 1e-48
Identities = 93/108 (86%), Positives = 98/108 (90%)
Frame = +2
Query: 17 SVAGVRAGVPSPLGCCPRWAAAMELSADYLREKLQRDLEAEHVEVEDTTPNRCASSFRVL 196
SVAG RAGV S LGC W AAMELSA+YLREKLQRDLEAEHVEVEDTT NRC+ SFRVL
Sbjct: 45 SVAGARAGVVSLLGCRSSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVL 104
Query: 197 VVSAKFEGKPLLQRHRLVNTCLSEELPHIHAFEQKTLTPEQWAREQQK 340
VVSAKFEGKPLLQRHRLVN CL+EELPHIHAFEQKTLTP+QWARE+QK
Sbjct: 105 VVSAKFEGKPLLQRHRLVNACLAEELPHIHAFEQKTLTPDQWARERQK 152
>ref|NP_057158.1| bolA-like protein 1 [Homo sapiens].
Length = 137
Score = 55.8 bits (133), Expect = 1e-08
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Frame = +2
Query: 104 LREKLQRDLEAEHVEVEDTT-----PNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCLSE 268
+R KL+ L E +E+ + + P + FRV VVS++FEG LQRHRLV+ L+E
Sbjct: 36 IRTKLEEALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVHAALAE 95
Query: 269 EL-PHIHAFEQKTLTPEQWAREQQ 337
EL +HA + TP QW Q
Sbjct: 96 ELGGPVHALAIQARTPAQWRENSQ 119
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 16,482,123
Number of extensions: 488056
Number of successful extensions: 3395
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3305
Number of HSP's successfully gapped: 3
Length of query: 139
Length of database: 18,297,164
Length adjustment: 92
Effective length of query: 47
Effective length of database: 15,264,476
Effective search space: 717430372
Effective search space used: 717430372
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003576
(419 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780312.1| bolA-like protein 2 [Mus musculus]. 157 3e-39
Alignment gi|NP_081251.1| bolA-like protein 1 [Mus musculus]. 57 4e-09
>ref|NP_780312.1| bolA-like protein 2 [Mus musculus].
Length = 86
Score = 157 bits (397), Expect = 3e-39
Identities = 75/86 (87%), Positives = 83/86 (96%)
Frame = +2
Query: 83 MELSADYLREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCL 262
MELSADYLREKL++DLEAEHVEVEDTT NRCA+SFRVLVVSAKFEGKPLLQRHRLVN CL
Sbjct: 1 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 60
Query: 263 SEELPHIHAFEQKTLTPEQWAREQQK 340
+EELPHIHAFEQKTLTPEQW R++++
Sbjct: 61 AEELPHIHAFEQKTLTPEQWTRQRRE 86
>ref|NP_081251.1| bolA-like protein 1 [Mus musculus].
Length = 137
Score = 57.4 bits (137), Expect = 4e-09
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Frame = +2
Query: 104 LREKLQRDLEAEHVEVEDTT-----PNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCLSE 268
+R KL++ L E +E+ + + P + FRV VVS++FEG LQRHRLV+ LSE
Sbjct: 36 IRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSE 95
Query: 269 ELP-HIHAFEQKTLTPEQWAREQQ 337
EL +HA + TP QW Q
Sbjct: 96 ELAGPVHALAIQAKTPAQWRENPQ 119
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 13,888,194
Number of extensions: 404654
Number of successful extensions: 2527
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2473
Number of HSP's successfully gapped: 2
Length of query: 139
Length of database: 15,617,559
Length adjustment: 91
Effective length of query: 48
Effective length of database: 12,884,283
Effective search space: 618445584
Effective search space used: 618445584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003576
(419 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360881.1| PREDICTED: bolA-like protein 2-like, partial... 162 5e-41
Alignment gi|NP_001230325.1| bolA-like protein 1 [Sus scrofa]. 59 9e-10
>ref|XP_003360881.1| PREDICTED: bolA-like protein 2-like, partial [Sus scrofa].
Length = 79
Score = 162 bits (411), Expect = 5e-41
Identities = 79/79 (100%), Positives = 79/79 (100%)
Frame = +2
Query: 104 LREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCLSEELPHI 283
LREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCLSEELPHI
Sbjct: 1 LREKLQRDLEAEHVEVEDTTPNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCLSEELPHI 60
Query: 284 HAFEQKTLTPEQWAREQQK 340
HAFEQKTLTPEQWAREQQK
Sbjct: 61 HAFEQKTLTPEQWAREQQK 79
>ref|NP_001230325.1| bolA-like protein 1 [Sus scrofa].
Length = 137
Score = 58.9 bits (141), Expect = 9e-10
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Frame = +2
Query: 104 LREKLQRDLEAEHVEVEDTT-----PNRCASSFRVLVVSAKFEGKPLLQRHRLVNTCLSE 268
+R KL++ L E +E+ + + P + FRV VVS++FEG LQRHRLV+T LSE
Sbjct: 36 IRMKLEQALNPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQRHRLVHTALSE 95
Query: 269 ELP-HIHAFEQKTLTPEQWAREQQ 337
EL +HA + TP QW Q
Sbjct: 96 ELAGPVHALAIQARTPAQWRENPQ 119
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 10,760,658
Number of extensions: 371637
Number of successful extensions: 2335
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2243
Number of HSP's successfully gapped: 2
Length of query: 139
Length of database: 11,343,932
Length adjustment: 89
Effective length of query: 50
Effective length of database: 9,128,099
Effective search space: 456404950
Effective search space used: 456404950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003576
(419 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892962.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 276 9e-72
Sscrofa_Chr13 84 7e-14
>gb|GL892962.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1775
Length = 17377
Score = 276 bits (139), Expect = 9e-72
Identities = 142/143 (99%)
Strand = Plus / Minus
Query: 243 ggcttgtgaacacgtgcctatcggaagagcttccgcacatccatgcctttgagcagaaaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8861 ggcttgtgaacacgtgcctatcggaagagcttccgcacatccatgcctttgagcagaaaa 8802
Query: 303 ccctgaccccagagcagtgggcccgtgagcagcaaaaataaggaaaccagacccgcacac 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8801 ccctgaccccagagcagtgggcccgtgagcagcaaaaataaggaaaccagacccacacac 8742
Query: 363 ctattaaattatgaatcagggcc 385
|||||||||||||||||||||||
Sbjct: 8741 ctattaaattatgaatcagggcc 8719
Score = 198 bits (100), Expect = 2e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 145 ggaagtggaggacacgactcccaatcgttgtgcgtccagcttccgagtgctcgtggtgtc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9313 ggaagtggaggacacgactcccaatcgttgtgcgtccagcttccgagtgctcgtggtgtc 9254
Query: 205 ggctaagttcgaagggaagcctctgcttcagagacaccgg 244
||||||||||||||||||||||||||||||||||||||||
Sbjct: 9253 ggctaagttcgaagggaagcctctgcttcagagacaccgg 9214
Score = 87.7 bits (44), Expect = 4e-15
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 103 cctccgggagaagctgcagcgggacctagaggctgagcacgtgg 146
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9490 cctccgggagaagctgcagcgggacctagaggctgagcacgtgg 9447
>Sscrofa_Chr13
|| Length = 218635234
Score = 83.8 bits (42), Expect = 7e-14
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 320 tgggcccgtgagcagcaaaaataaggaaaccagacccgcacacctattaaattatgaatc 379
||||||| |||||||||||||||||| | ||||||| | |||||||||||||||||||||
Sbjct: 51705217 tgggcccatgagcagcaaaaataagggacccagacctgtacacctattaaattatgaatc 51705158
Query: 380 ag 381
||
Sbjct: 51705157 ag 51705156
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 9,132,461
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 4
Length of query: 419
Length of database: 2,808,509,378
Length adjustment: 20
Effective length of query: 399
Effective length of database: 2,808,417,738
Effective search space: 1120558677462
Effective search space used: 1120558677462
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)