Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003577
(628 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193315.1| huntingtin-interacting protein K [Bos taurus]. 192 1e-49
>ref|NP_001193315.1| huntingtin-interacting protein K [Bos taurus].
Length = 121
Score = 192 bits (489), Expect = 1e-49
Identities = 103/121 (85%), Positives = 103/121 (85%)
Frame = +1
Query: 43 MATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVIG 222
MATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVIG
Sbjct: 1 MATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVIG 60
Query: 223 DXXXXXXXXXXXXXXXXXXVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIALT 402
D VTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIALT
Sbjct: 61 DRRSREQKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIALT 120
Query: 403 N 405
N
Sbjct: 121 N 121
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,131,819
Number of extensions: 643574
Number of successful extensions: 2432
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2400
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 111
Effective length of database: 14,438,750
Effective search space: 1602701250
Effective search space used: 1602701250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003577
(628 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544652.2| PREDICTED: similar to Huntingtin interacting pr... 195 3e-50
>ref|XP_544652.2| PREDICTED: similar to Huntingtin interacting protein K [Canis
familiaris].
Length = 165
Score = 195 bits (495), Expect = 3e-50
Identities = 104/123 (84%), Positives = 105/123 (85%)
Frame = +1
Query: 37 IEMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSV 216
I+MATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSV
Sbjct: 43 IDMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSV 102
Query: 217 IGDXXXXXXXXXXXXXXXXXXVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIA 396
IGD VTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIA
Sbjct: 103 IGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIA 162
Query: 397 LTN 405
LTN
Sbjct: 163 LTN 165
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 23,052,941
Number of extensions: 624133
Number of successful extensions: 2715
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2699
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 111
Effective length of database: 15,607,576
Effective search space: 1732440936
Effective search space used: 1732440936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003577
(628 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057484.3| huntingtin-interacting protein K isoform 1 [Hom... 195 3e-50
Alignment gi|NP_001186814.1| huntingtin-interacting protein K isoform 2 [... 113 9e-31
>ref|NP_057484.3| huntingtin-interacting protein K isoform 1 [Homo sapiens].
Length = 129
Score = 195 bits (495), Expect = 3e-50
Identities = 104/123 (84%), Positives = 105/123 (85%)
Frame = +1
Query: 37 IEMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSV 216
I+MATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSV
Sbjct: 7 IDMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSV 66
Query: 217 IGDXXXXXXXXXXXXXXXXXXVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIA 396
IGD VTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIA
Sbjct: 67 IGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIA 126
Query: 397 LTN 405
LTN
Sbjct: 127 LTN 129
>ref|NP_001186814.1| huntingtin-interacting protein K isoform 2 [Homo sapiens].
Length = 81
Score = 113 bits (282), Expect(2) = 9e-31
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = +1
Query: 37 IEMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLET 204
I+MATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLET
Sbjct: 7 IDMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLET 62
Score = 38.5 bits (88), Expect(2) = 9e-31
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +3
Query: 246 SKAGAGEGTGKSHHQEGRSGADND 317
S GE TGKSH+QEGRSGA+ND
Sbjct: 58 SNLETGERTGKSHYQEGRSGANND 81
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,418,281
Number of extensions: 601162
Number of successful extensions: 2535
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2508
Number of HSP's successfully gapped: 3
Length of query: 209
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 111
Effective length of database: 15,066,692
Effective search space: 1672402812
Effective search space used: 1672402812
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003577
(628 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080594.2| huntingtin-interacting protein K [Mus musculus]. 196 1e-50
>ref|NP_080594.2| huntingtin-interacting protein K [Mus musculus].
Length = 129
Score = 196 bits (498), Expect = 1e-50
Identities = 105/123 (85%), Positives = 105/123 (85%)
Frame = +1
Query: 37 IEMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSV 216
IEMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSV
Sbjct: 7 IEMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSV 66
Query: 217 IGDXXXXXXXXXXXXXXXXXXVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIA 396
IGD VTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIA
Sbjct: 67 IGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIA 126
Query: 397 LTN 405
LTN
Sbjct: 127 LTN 129
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 18,847,606
Number of extensions: 496713
Number of successful extensions: 1995
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1964
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 112
Effective length of database: 12,704,067
Effective search space: 1422855504
Effective search space used: 1422855504
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003577
(628 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925828.2| PREDICTED: huntingtin-interacting protein K-... 194 2e-50
>ref|XP_001925828.2| PREDICTED: huntingtin-interacting protein K-like [Sus scrofa].
Length = 136
Score = 194 bits (494), Expect = 2e-50
Identities = 104/122 (85%), Positives = 104/122 (85%)
Frame = +1
Query: 40 EMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVI 219
EMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVI
Sbjct: 15 EMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVI 74
Query: 220 GDXXXXXXXXXXXXXXXXXXVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIAL 399
GD VTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIAL
Sbjct: 75 GDRRSREQKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEALIAL 134
Query: 400 TN 405
TN
Sbjct: 135 TN 136
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,763,485
Number of extensions: 487480
Number of successful extensions: 1656
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 115
Effective length of database: 9,003,614
Effective search space: 1035415610
Effective search space used: 1035415610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003577
(628 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 373 e-101
>Sscrofa_Chr01
|| Length = 315321322
Score = 373 bits (188), Expect = e-101
Identities = 191/192 (99%)
Strand = Plus / Minus
Query: 14 ggcctgaggggcggcgcggtgggatcgaaatggcgaccgagggggatgtggagctagaat 73
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 142589337 ggcctgaggggcggcgcggtgggagcgaaatggcgaccgagggggatgtggagctagaat 142589278
Query: 74 tggagactgagaccagtggcccggagcgacctcccgagaagccacggaagcacgacagcg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142589277 tggagactgagaccagtggcccggagcgacctcccgagaagccacggaagcacgacagcg 142589218
Query: 134 gtgcggcggacttggagcgagtcaccgattatgcggaggagaaggagatccagagttcca 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142589217 gtgcggcggacttggagcgagtcaccgattatgcggaggagaaggagatccagagttcca 142589158
Query: 194 atctggagacgg 205
||||||||||||
Sbjct: 142589157 atctggagacgg 142589146
Score = 321 bits (162), Expect = 3e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 313 atgacagagatggagatctctcgagcagcagcagaacggagtttgagagaacacatgggc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142588227 atgacagagatggagatctctcgagcagcagcagaacggagtttgagagaacacatgggc 142588168
Query: 373 aacgtggtagaggctcttattgccctgaccaactgatttgtgctttctcagacataccca 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142588167 aacgtggtagaggctcttattgccctgaccaactgatttgtgctttctcagacataccca 142588108
Query: 433 ctggattaacttatttcaataaagatgccttctttttcttgc 474
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142588107 ctggattaacttatttcaataaagatgccttctttttcttgc 142588066
Score = 107 bits (54), Expect = 7e-21
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 204 ggccatgtccgtaatcggagatagacggtcccgggagcagaaagcaaagcaggagcgg 261
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 142588844 ggccatgtccgtaatcggagataggcggtcccgggagcagaaagcaaagcaggagcgg 142588787
Score = 105 bits (53), Expect = 3e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 260 gggagaaggaactggcaaaagtcaccatcaagaaggaagatctggagctgata 312
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142588414 gggagaaggaactggcaaaagtcaccatcaagaaggaagatctggagctgata 142588362
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,320,581
Number of extensions: 264
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 4
Length of query: 628
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 607
Effective length of database: 2,808,413,156
Effective search space: 1704706785692
Effective search space used: 1704706785692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)