Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003582
(1028 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069782.1| ADP-sugar pyrophosphatase [Bos taurus]. 286 3e-77
>ref|NP_001069782.1| ADP-sugar pyrophosphatase [Bos taurus].
Length = 172
Score = 286 bits (731), Expect = 3e-77
Identities = 134/163 (82%), Positives = 145/163 (88%)
Frame = +3
Query: 210 QQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSADGV 389
+Q A S N++Q++ISEELI+EGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSADGV
Sbjct: 2 EQGTAGSSRNTEQSIISEELIAEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSADGV 61
Query: 390 SIIPVLQRTLHYECVVLVKQFRPPMGGYCLEFPAGLIDENESPXXXXXXXXXXXTGYKGD 569
+IIPVLQRTLHYEC++LVKQFRPPMGGYCLEFPAGLID+NESP TGYKGD
Sbjct: 62 AIIPVLQRTLHYECIILVKQFRPPMGGYCLEFPAGLIDDNESPEAAALRELEEETGYKGD 121
Query: 570 VAECSPAVCMDPGLSNCTTHVVTVMINGDDAENVRPKPKPGDG 698
VAECSPAVCMDPGLSNCT H+VTV INGDDAENVRPKPKPGDG
Sbjct: 122 VAECSPAVCMDPGLSNCTAHIVTVTINGDDAENVRPKPKPGDG 164
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,893,572
Number of extensions: 1118368
Number of successful extensions: 3266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3264
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003582
(1028 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535190.2| PREDICTED: similar to ADP-sugar pyrophosphatase... 394 e-110
Alignment gi|XP_857789.1| PREDICTED: similar to ADP-sugar pyrophosphatase... 382 e-106
Alignment gi|XP_857747.1| PREDICTED: similar to ADP-sugar pyrophosphatase... 311 8e-85
>ref|XP_535190.2| PREDICTED: similar to ADP-sugar pyrophosphatase (Nucleoside
diphosphate-linked moiety X motif 5) (Nudix motif 5)
(YSA1H) isoform 1 [Canis familiaris].
Length = 219
Score = 394 bits (1013), Expect = e-110
Identities = 188/219 (85%), Positives = 201/219 (91%)
Frame = +3
Query: 204 MDQQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSAD 383
M+ +EPA+PS N+KQ++ISEELISEGKWVKLEKTTY DPTGK RTWETVKRTTRKGQSAD
Sbjct: 1 MENREPADPSQNTKQSIISEELISEGKWVKLEKTTYMDPTGKIRTWETVKRTTRKGQSAD 60
Query: 384 GVSIIPVLQRTLHYECVVLVKQFRPPMGGYCLEFPAGLIDENESPXXXXXXXXXXXTGYK 563
GV++IPVLQRTLHYEC+VLVKQFRPPMGGYCLEFPAGLID+NESP TGYK
Sbjct: 61 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYCLEFPAGLIDDNESPEAAALRELEEETGYK 120
Query: 564 GDVAECSPAVCMDPGLSNCTTHVVTVMINGDDAENVRPKPKPGDGEFVEVISLPKNDLLS 743
GDVAECSPAVCMDPGL+NCTTH+VTV INGDDAENVRPKPKPGDGEFVEVISLPKNDLL
Sbjct: 121 GDVAECSPAVCMDPGLTNCTTHIVTVTINGDDAENVRPKPKPGDGEFVEVISLPKNDLLK 180
Query: 744 RLHALVADEHLTVDARVYSYALALKHANTKPFEVPFLKF 860
RL ALVA+EHLTVDARVYSYALALKHANTKPFEVPFLKF
Sbjct: 181 RLDALVAEEHLTVDARVYSYALALKHANTKPFEVPFLKF 219
>ref|XP_857789.1| PREDICTED: similar to ADP-sugar pyrophosphatase (Nucleoside
diphosphate-linked moiety X motif 5) (Nudix motif 5)
(YSA1H) isoform 3 [Canis familiaris].
Length = 216
Score = 382 bits (981), Expect = e-106
Identities = 185/219 (84%), Positives = 198/219 (90%)
Frame = +3
Query: 204 MDQQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSAD 383
M+ +EPA+PS N+KQ++ISEELISEGKWVKLEKTTY DPTGK RTWETVKRTTRKGQSAD
Sbjct: 1 MENREPADPSQNTKQSIISEELISEGKWVKLEKTTYMDPTGKIRTWETVKRTTRKGQSAD 60
Query: 384 GVSIIPVLQRTLHYECVVLVKQFRPPMGGYCLEFPAGLIDENESPXXXXXXXXXXXTGYK 563
GV++IPVLQRTLHYEC+VLVKQFRPPMGGYCLEFPAGLID+NESP TGYK
Sbjct: 61 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYCLEFPAGLIDDNESPEAAALRELEEETGYK 120
Query: 564 GDVAECSPAVCMDPGLSNCTTHVVTVMINGDDAENVRPKPKPGDGEFVEVISLPKNDLLS 743
GDVAECSPAVCMDPGL+NCTTH+VTV INGDDAENVRPKPKP EFVEVISLPKNDLL
Sbjct: 121 GDVAECSPAVCMDPGLTNCTTHIVTVTINGDDAENVRPKPKP---EFVEVISLPKNDLLK 177
Query: 744 RLHALVADEHLTVDARVYSYALALKHANTKPFEVPFLKF 860
RL ALVA+EHLTVDARVYSYALALKHANTKPFEVPFLKF
Sbjct: 178 RLDALVAEEHLTVDARVYSYALALKHANTKPFEVPFLKF 216
>ref|XP_857747.1| PREDICTED: similar to ADP-sugar pyrophosphatase (Nucleoside
diphosphate-linked moiety X motif 5) (Nudix motif 5)
(YSA1H) isoform 2 [Canis familiaris].
Length = 175
Score = 311 bits (796), Expect = 8e-85
Identities = 152/182 (83%), Positives = 159/182 (87%)
Frame = +3
Query: 315 DPTGKTRTWETVKRTTRKGQSADGVSIIPVLQRTLHYECVVLVKQFRPPMGGYCLEFPAG 494
DPTGK RTWETVKRTTRKGQSADGV++IPVLQRTLHYEC+VLVKQFRPPMGGYCLEFPAG
Sbjct: 2 DPTGKIRTWETVKRTTRKGQSADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCLEFPAG 61
Query: 495 LIDENESPXXXXXXXXXXXTGYKGDVAECSPAVCMDPGLSNCTTHVVTVMINGDDAENVR 674
LID+NESP TGYK AVCMDPGL+NCTTH+VTV INGDDAENVR
Sbjct: 62 LIDDNESPEAAALRELEEETGYK--------AVCMDPGLTNCTTHIVTVTINGDDAENVR 113
Query: 675 PKPKPGDGEFVEVISLPKNDLLSRLHALVADEHLTVDARVYSYALALKHANTKPFEVPFL 854
PKPKPGDGEFVEVISLPKNDLL RL ALVA+EHLTVDARVYSYALALKHANTKPFEVPFL
Sbjct: 114 PKPKPGDGEFVEVISLPKNDLLKRLDALVAEEHLTVDARVYSYALALKHANTKPFEVPFL 173
Query: 855 KF 860
KF
Sbjct: 174 KF 175
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,399,699
Number of extensions: 1125660
Number of successful extensions: 3370
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3368
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003582
(1028 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054861.2| ADP-sugar pyrophosphatase [Homo sapiens]. 378 e-105
>ref|NP_054861.2| ADP-sugar pyrophosphatase [Homo sapiens].
Length = 219
Score = 378 bits (971), Expect = e-105
Identities = 180/219 (82%), Positives = 193/219 (88%)
Frame = +3
Query: 204 MDQQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSAD 383
M+ QEP E S N KQ +ISEELISEGKWVKLEKTTY DPTGKTRTWE+VKRTTRK Q+AD
Sbjct: 1 MESQEPTESSQNGKQYIISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTAD 60
Query: 384 GVSIIPVLQRTLHYECVVLVKQFRPPMGGYCLEFPAGLIDENESPXXXXXXXXXXXTGYK 563
GV++IPVLQRTLHYEC+VLVKQFRPPMGGYC+EFPAGLID+ E+P TGYK
Sbjct: 61 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYK 120
Query: 564 GDVAECSPAVCMDPGLSNCTTHVVTVMINGDDAENVRPKPKPGDGEFVEVISLPKNDLLS 743
GD+AECSPAVCMDPGLSNCT H+VTV INGDDAEN RPKPKPGDGEFVEVISLPKNDLL
Sbjct: 121 GDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQ 180
Query: 744 RLHALVADEHLTVDARVYSYALALKHANTKPFEVPFLKF 860
RL ALVA+EHLTVDARVYSYALALKHAN KPFEVPFLKF
Sbjct: 181 RLDALVAEEHLTVDARVYSYALALKHANAKPFEVPFLKF 219
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,595,124
Number of extensions: 1094252
Number of successful extensions: 3193
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3193
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003582
(1028 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058614.1| ADP-sugar pyrophosphatase [Mus musculus]. 352 3e-97
>ref|NP_058614.1| ADP-sugar pyrophosphatase [Mus musculus].
Length = 218
Score = 352 bits (903), Expect = 3e-97
Identities = 171/219 (78%), Positives = 187/219 (85%)
Frame = +3
Query: 204 MDQQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSAD 383
M+ +E E SP K V SEELISEGKWVK EKTTY DPTGKTRTWETVK TTRKG+SAD
Sbjct: 1 METRESTESSPG-KHLVTSEELISEGKWVKFEKTTYMDPTGKTRTWETVKLTTRKGKSAD 59
Query: 384 GVSIIPVLQRTLHYECVVLVKQFRPPMGGYCLEFPAGLIDENESPXXXXXXXXXXXTGYK 563
VS+IPVLQRTLH+ECV+LVKQFRPPMG YCLEFPAG I++ ESP TGYK
Sbjct: 60 AVSVIPVLQRTLHHECVILVKQFRPPMGSYCLEFPAGFIEDGESPEAAALRELEEETGYK 119
Query: 564 GDVAECSPAVCMDPGLSNCTTHVVTVMINGDDAENVRPKPKPGDGEFVEVISLPKNDLLS 743
G+VAECSPAVCMDPGLSNCTTHVVTV INGDDA NVRPKPKPGDGEF+EVISLPKNDLL+
Sbjct: 120 GEVAECSPAVCMDPGLSNCTTHVVTVTINGDDAGNVRPKPKPGDGEFMEVISLPKNDLLT 179
Query: 744 RLHALVADEHLTVDARVYSYALALKHANTKPFEVPFLKF 860
RL AL A++HLTVDA+VY+Y LALKHAN+KPFEVPFLKF
Sbjct: 180 RLDALGAEQHLTVDAKVYAYGLALKHANSKPFEVPFLKF 218
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,368,030
Number of extensions: 917679
Number of successful extensions: 2757
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2756
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003582
(1028 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361139.1| PREDICTED: ADP-sugar pyrophosphatase-like [S... 285 3e-77
>ref|XP_003361139.1| PREDICTED: ADP-sugar pyrophosphatase-like [Sus scrofa].
Length = 270
Score = 285 bits (729), Expect = 3e-77
Identities = 153/216 (70%), Positives = 156/216 (72%), Gaps = 37/216 (17%)
Frame = +3
Query: 204 MDQQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSAD 383
MDQQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSAD
Sbjct: 1 MDQQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSAD 60
Query: 384 GVSIIPVLQRTLHYECV-------------------------VLVKQFRPP--------- 461
GVSIIPVLQRTLHYECV VL PP
Sbjct: 61 GVSIIPVLQRTLHYECVSLNTGSGGGGLGVALDSIPSRKRTVVLSPPAPPPSFLQPPPPL 120
Query: 462 ---MGGYCLEFPAGLIDENESPXXXXXXXXXXXTGYKGDVAECSPAVCMDPGLSNCTTHV 632
+ G+CL IDENESP TGYKGDVAECSPAVCMDPGLSNCTTHV
Sbjct: 121 PRSLSGHCL------IDENESPEAAALRELEEETGYKGDVAECSPAVCMDPGLSNCTTHV 174
Query: 633 VTVMINGDDAENVRPKPKPGDGEFVEVISLPKNDLL 740
VTVMINGDDAENVRPKPKPGDGEFVEVISLPKNDL+
Sbjct: 175 VTVMINGDDAENVRPKPKPGDGEFVEVISLPKNDLI 210
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,032,781
Number of extensions: 769266
Number of successful extensions: 2304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2304
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003582
(1028 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 426 e-116
gb|GL893598.2| Sus scrofa unplaced genomic scaffold ChrUScaf1483 319 2e-84
>Sscrofa_Chr10
|| Length = 79102373
Score = 426 bits (215), Expect = e-116
Identities = 225/227 (99%), Gaps = 1/227 (0%)
Strand = Plus / Plus
Query: 753 gctctggtagccgacgaacacctgaccgtggatgcccgagtctactcgtacgcgctggcc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65574023 gctctggtagccgacgaacacctgaccgtggatgcccgagtctactcgtacgcgctggcc 65574082
Query: 813 ctgaaacacgcaaacacgaagccgtttgaagtgcccttcctcaagttttaaggccaaagg 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 65574083 ctgaaacacgcaaacacgaagccgtttgaagtgcccttcctcaagttttaaggccgaagg 65574142
Query: 873 acggtgggcatgttttggtaaacaaccaccaggccttttcactgagactttgtattcagc 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65574143 acggtgggcatgttttggtaaacaaccaccaggccttttcactgagactttgtattcagc 65574202
Query: 933 ttacttctaatggagagttg-aattagcttttcataaaataaaagca 978
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 65574203 ttacttctaatggagagttgaaattagcttttcataaaataaaagca 65574249
Score = 305 bits (154), Expect = 3e-80
Identities = 157/158 (99%)
Strand = Plus / Plus
Query: 1 gaaggaacgagcgctcatcctctctgcaccgcgagacgcggttgtggctcccccagtagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 65552475 gaaggaacgagcgctcatcctctctgcaccgcgagacgcggttgtggctcctccagtagc 65552534
Query: 61 gcagcatcttcggtgacgactgcctcggacccgtgctttctgcgttcctcccggttccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65552535 gcagcatcttcggtgacgactgcctcggacccgtgctttctgcgttcctcccggttccta 65552594
Query: 121 aaggagtacgcatcccttcgccccacgcctgggaggag 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 65552595 aaggagtacgcatcccttcgccccacgcctgggaggag 65552632
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 384 ggcgtgtccatcatccccgtcctgcagaggaccctgcactacgagtgtgtcgtgctggtc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65568169 ggcgtgtccatcatccccgtcctgcagaggaccctgcactacgagtgtgtcgtgctggtc 65568228
Query: 444 aagcagttccggccgcccatgggaggctactgcctggagttccccgccggt 494
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65568229 aagcagttccggccgcccatgggaggctactgcctggagttccccgccggt 65568279
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 157 agtgtgaactttttgctgggggcccataaagaccgacaagtttgaaaatggaccagcaag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65562817 agtgtgaactttttgctgggggcccataaagaccgacaagtttgaaaatggaccagcaag 65562876
Query: 217 agccagcggagccttctccgaattccaaacaggctgttatttcagaggag 266
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65562877 agccagcggagccttctccgaattccaaacaggctgttatttcagaggag 65562926
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 586 cagctgtgtgtatggacccggggctgtcaaactgtaccacccacgtcgtgaccgtcatga 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65569748 cagctgtgtgtatggacccggggctgtcaaactgtaccacccacgtcgtgaccgtcatga 65569807
Query: 646 tcaacggggatgacgctgagaacgtgaggcccaagccaaagccagg 691
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65569808 tcaacggggatgacgctgagaacgtgaggcccaagccaaagccagg 65569853
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 492 ggtctcattgatgagaacgaaagccccgaagcagctgctctgcgggagctcgaggaagag 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65569355 ggtctcattgatgagaacgaaagccccgaagcagctgctctgcgggagctcgaggaagag 65569414
Query: 552 actggctacaagggagatgtcgccgaatgttctccag 588
|||||||||||||||||||||||||||||||||||||
Sbjct: 65569415 actggctacaagggagatgtcgccgaatgttctccag 65569451
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 265 agttaatttcagaaggaaaatgggtcaagcttgaaaaaacaacttacagggatcctactg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65564193 agttaatttcagaaggaaaatgggtcaagcttgaaaaaacaacttacagggatcctactg 65564252
Query: 325 gaaaaacaag 334
||||||||||
Sbjct: 65564253 gaaaaacaag 65564262
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 698 agaattcgtggaagtaatttccttaccaaagaatgacctgctgagcagactccatg 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65571341 agaattcgtggaagtaatttccttaccaaagaatgacctgctgagcagactccatg 65571396
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 333 agaacttgggaaactgtgaagcgtacaaccaggaaaggacagtcggctgatgg 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65566918 agaacttgggaaactgtgaagcgtacaaccaggaaaggacagtcggctgatgg 65566970
>gb|GL893598.2| Sus scrofa unplaced genomic scaffold ChrUScaf1483
Length = 101682
Score = 319 bits (161), Expect = 2e-84
Identities = 171/173 (98%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 807 ctggccctgaaacacgcaaacacgaagccgtttgaagtgcccttcctcaagttttaaggc 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30493 ctggccctgaaacacgcaaacacgaagccgtttgaagtgcccttcctcaagttttaaggc 30434
Query: 867 caaaggacggtgggcatgttttggtaaacaaccaccaggccttttcactgagactttgta 926
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30433 cgaaggacggtgggcatgttttggtaaacaaccaccaggccttttcactgagactttgta 30374
Query: 927 ttcagcttacttctaatggagagttg-aattagcttttcataaaataaaagca 978
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 30373 ttcagcttacttctaatggagagttgaaattagcttttcataaaataaaagca 30321
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 157 agtgtgaactttttgctgggggcccataaagaccgacaagtttgaaaatggaccagcaag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41648 agtgtgaactttttgctgggggcccataaagaccgacaagtttgaaaatggaccagcaag 41589
Query: 217 agccagcggagccttctccgaattccaaacaggctgttatttcagaggag 266
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41588 agccagcggagccttctccgaattccaaacaggctgttatttcagaggag 41539
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 586 cagctgtgtgtatggacccggggctgtcaaactgtaccacccacgtcgtgaccgtcatga 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34932 cagctgtgtgtatggacccggggctgtcaaactgtaccacccacgtcgtgaccgtcatga 34873
Query: 646 tcaacggggatgacgctgagaacgtgaggcccaagccaaagccagg 691
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34872 tcaacggggatgacgctgagaacgtgaggcccaagccaaagccagg 34827
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 58 agcgcagcatcttcggtgacgactgcctcggacccgtgctttctgcgttcctcccggttc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49166 agcgcagcatcttcggtgacgactgcctcggacccgtgctttctgcgttcctcccggttc 49107
Query: 118 ctaaaggagtacgcatcccttcgccccacgcctgggaggag 158
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 49106 ctaaaggagtacgcatcccttcgccccacgcctgggaggag 49066
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 492 ggtctcattgatgagaacgaaagccccgaagcagctgctctgcgggagctcgaggaagag 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35486 ggtctcattgatgagaacgaaagccccgaagcagctgctctgcgggagctcgaggaagag 35427
Query: 552 actggctacaagggagatgtcgccgaatgttctccag 588
|||||||||||||||||||||||||||||||||||||
Sbjct: 35426 actggctacaagggagatgtcgccgaatgttctccag 35390
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 265 agttaatttcagaaggaaaatgggtcaagcttgaaaaaacaacttacagggatcctactg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40386 agttaatttcagaaggaaaatgggtcaagcttgaaaaaacaacttacagggatcctactg 40327
Query: 325 gaaaaacaag 334
||||||||||
Sbjct: 40326 gaaaaacaag 40317
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 384 ggcgtgtccatcatccccgtcctgcagaggaccctgcactacgagtgtgtcgt 436
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36164 ggcgtgtccatcatccccgtcctgcagaggaccctgcactacgagtgtgtcgt 36112
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 333 agaacttgggaaactgtgaagcgtacaaccaggaaaggacagtcggctgatgg 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37574 agaacttgggaaactgtgaagcgtacaaccaggaaaggacagtcggctgatgg 37522
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 698 agaattcgtggaagtaatttccttaccaaagaatgacctgctgagcaga 746
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33339 agaattcgtggaagtaatttccttaccaaagaatgacctgctgagcaga 33291
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,656,083
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 18
Length of query: 1028
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1007
Effective length of database: 2,808,413,156
Effective search space: 2828072048092
Effective search space used: 2828072048092
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)