Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003599
(1383 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093821.1| apolipoprotein L, 3 [Bos taurus]. 382 e-106
Alignment gi|NP_001093767.1| apolipoprotein L3 [Bos taurus]. 287 1e-77
Alignment gi|XP_002687729.1| PREDICTED: apolipoprotein L2-like [Bos tauru... 278 8e-75
Alignment gi|XP_605852.4| PREDICTED: apolipoprotein L2-like [Bos taurus]. 278 8e-75
Alignment gi|XP_599474.5| PREDICTED: apolipoprotein L6-like [Bos taurus]. 278 8e-75
Alignment gi|XP_002687724.1| PREDICTED: apolipoprotein L2-like, partial [... 278 1e-74
Alignment gi|NP_001093803.1| apolipoprotein L, 3-like [Bos taurus]. 274 1e-73
Alignment gi|XP_002687725.1| PREDICTED: apolipoprotein L, 3-like [Bos tau... 271 8e-73
Alignment gi|XP_592110.5| PREDICTED: apolipoprotein L, 3-like [Bos taurus]. 271 8e-73
Alignment gi|XP_001254057.3| PREDICTED: apolipoprotein L, 3-like [Bos tau... 271 8e-73
>ref|NP_001093821.1| apolipoprotein L, 3 [Bos taurus].
Length = 338
Score = 382 bits (982), Expect = e-106
Identities = 206/338 (60%), Positives = 248/338 (73%)
Frame = +2
Query: 215 MSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALR 394
MSS+D R SESE+F E++ +Y +++VSRE+L+LLLTE +AWE FV EADLSREEA+ L
Sbjct: 1 MSSEDRRKSSESENFFEDIIQYLKDSVSREQLELLLTEKEAWETFVAEADLSREEANVLY 60
Query: 395 EYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDC 574
EYL EL+TDL ED+D QDQL+R RFL+EFPRVK E+E I KLHALA KVDKVHRDC
Sbjct: 61 EYLLELKTDLVEEDQDRPQQDQLDRKRFLEEFPRVKQELEETIAKLHALADKVDKVHRDC 120
Query: 575 TISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVN 754
T++NVVA+S GA SG+LT+LGLALAP+T VT VS SIV+ V+
Sbjct: 121 TVTNVVASSAGAVSGVLTILGLALAPMTAGISLGLSATGLGLGAAAAVTSVSTSIVEHVS 180
Query: 755 SSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKAN 934
S AE EASRL + N+ EV +E L K TPQIVS TKN IQ L IGKN+RAIKLAK N
Sbjct: 181 RSSAETEASRLGPIAINEGEVFAEVLCKRTPQIVSSTKNLIQALKGIGKNVRAIKLAKVN 240
Query: 935 PRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVK 1114
PRLA++AKRFMT GQVS R+ + V++ F GT LAMTK+ARI+G ATAG ALL+DV FLVK
Sbjct: 241 PRLASHAKRFMTVGQVSARSSKQVQRAFGGTALAMTKSARIVGAATAGAALLVDVAFLVK 300
Query: 1115 ESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESL 1228
E+ HL +GAK ESAER+RQ A+ R YESL
Sbjct: 301 EAKHLHEGAKTESAERMRQMAKELEKKLEELIRTYESL 338
>ref|NP_001093767.1| apolipoprotein L3 [Bos taurus].
Length = 328
Score = 287 bits (735), Expect = 1e-77
Identities = 167/336 (49%), Positives = 220/336 (65%)
Frame = +2
Query: 215 MSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALR 394
MSS+DPRD SES+SF ++V EY + +VS EELQ LLTE + W+ FVTEADLSREEAD L
Sbjct: 1 MSSEDPRDCSESQSFYKDVFEYVQKSVSLEELQFLLTEDEPWKNFVTEADLSREEADVLY 60
Query: 395 EYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDC 574
EYL +L TDLA EDKDSL + Q E+ RFL+EFP+VK E++ I KLH LA VDKVHRDC
Sbjct: 61 EYLIKLLTDLAEEDKDSLQKCQQEKERFLKEFPQVKQELKENIKKLHELADNVDKVHRDC 120
Query: 575 TISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVN 754
TISNVVA+STG ASG L++LG+ LAP T VTG+S +V+KVN
Sbjct: 121 TISNVVASSTGIASGALSILGVVLAPFTAGLSLGLSATGIGLGAASAVTGISTMVVEKVN 180
Query: 755 SSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKAN 934
S AE +AS L ++A++ S K + + GK+IRAI++A+
Sbjct: 181 LSSAESQASLL-----DRAKITS-------------YKRHLIKVKEFGKHIRAIRVARGY 222
Query: 935 PRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVK 1114
PRL A A+R++T G+VSV++ R V+ F+GT L++T+ ARI +G+ + +DV LVK
Sbjct: 223 PRLVATAQRYITTGRVSVQSARQVRSHFQGTALSVTRGARIWRGIVSGLFMGLDVYCLVK 282
Query: 1115 ESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYE 1222
++ LQQGAK SAE++RQ+AQ T IYE
Sbjct: 283 DAQELQQGAKTASAEKMRQKAQELETKLEKLTCIYE 318
>ref|XP_002687729.1| PREDICTED: apolipoprotein L2-like [Bos taurus].
Length = 321
Score = 278 bits (711), Expect = 8e-75
Identities = 162/339 (47%), Positives = 216/339 (63%)
Frame = +2
Query: 215 MSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALR 394
MSS+DPRD SES+SF E+V EYF+ +V E+LQ LLTE K WE FVTEADLSREEAD L
Sbjct: 1 MSSEDPRDCSESQSFFEDVLEYFQGSVRWEQLQFLLTEDKPWENFVTEADLSREEADVLY 60
Query: 395 EYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDC 574
E L +L+TDLA ED+D L + Q E+ RFL+EFP+VK E++ I KLH LA VDKVH DC
Sbjct: 61 ECLIKLQTDLAGEDQDRLQKYQQEKERFLKEFPQVKEELKESIRKLHELADNVDKVHSDC 120
Query: 575 TISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVN 754
TISNVVA+STG ASG L++LGL LAP T VTG+S +V+ V+
Sbjct: 121 TISNVVASSTGIASGTLSILGLVLAPFTAGLSLGLSAAGIGLGAAAAVTGLSTMVVENVH 180
Query: 755 SSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKAN 934
S AE +AS L +I+S + Q + G +IRAI++A+ N
Sbjct: 181 MSSAESQASLL-----------------DIAKIISYVYDLYQ-VKVFGSHIRAIRVARGN 222
Query: 935 PRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVK 1114
P+L A A+R++T G++S+R+ R V++ F GT LAMT+ AR+ +G+ + +DV LVK
Sbjct: 223 PQLVATAQRYITTGRISLRSARQVRRHFRGTALAMTRAARVRRGVLSGLFMGLDVYSLVK 282
Query: 1115 ESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
++ +Q+GAK AE +RQ+A+ T IYESLQ
Sbjct: 283 DAQDVQEGAKTALAENMRQKARELEKKLEELTWIYESLQ 321
>ref|XP_605852.4| PREDICTED: apolipoprotein L2-like [Bos taurus].
Length = 321
Score = 278 bits (711), Expect = 8e-75
Identities = 162/339 (47%), Positives = 216/339 (63%)
Frame = +2
Query: 215 MSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALR 394
MSS+DPRD SES+SF E+V EYF+ +V E+LQ LLTE K WE FVTEADLSREEAD L
Sbjct: 1 MSSEDPRDCSESQSFFEDVLEYFQGSVRWEQLQFLLTEDKPWENFVTEADLSREEADVLY 60
Query: 395 EYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDC 574
E L +L+TDLA ED+D L + Q E+ RFL+EFP+VK E++ I KLH LA VDKVH DC
Sbjct: 61 ECLIKLQTDLAGEDQDRLQKYQQEKERFLKEFPQVKEELKESIRKLHELADNVDKVHSDC 120
Query: 575 TISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVN 754
TISNVVA+STG ASG L++LGL LAP T VTG+S +V+ V+
Sbjct: 121 TISNVVASSTGIASGTLSILGLVLAPFTAGLSLGLSAAGIGLGAAAAVTGLSTMVVENVH 180
Query: 755 SSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKAN 934
S AE +AS L +I+S + Q + G +IRAI++A+ N
Sbjct: 181 MSSAESQASLL-----------------DIAKIISYVYDLYQ-VKVFGSHIRAIRVARGN 222
Query: 935 PRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVK 1114
P+L A A+R++T G++S+R+ R V++ F GT LAMT+ AR+ +G+ + +DV LVK
Sbjct: 223 PQLVATAQRYITTGRISLRSARQVRRHFRGTALAMTRAARVRRGVLSGLFMGLDVYSLVK 282
Query: 1115 ESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
++ +Q+GAK AE +RQ+A+ T IYESLQ
Sbjct: 283 DAQDVQEGAKTALAENMRQKARELEKKLEELTWIYESLQ 321
>ref|XP_599474.5| PREDICTED: apolipoprotein L6-like [Bos taurus].
Length = 424
Score = 278 bits (711), Expect = 8e-75
Identities = 166/353 (47%), Positives = 223/353 (63%)
Frame = +2
Query: 215 MSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALR 394
MSS++ + S+ E F E+V E + +SREEL LLLTE +K A LSRE+ +AL
Sbjct: 1 MSSENLGNCSDIEIFFEDVAECLWDILSREELLLLLTE--FLKKIEVNAGLSREDMNALH 58
Query: 395 EYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDC 574
EYL EL+ DLA +++++L ++QL+R RFL++FPRV ++ KL LA VDKVHRDC
Sbjct: 59 EYLNELKRDLAGKEQETLPKEQLDRKRFLKKFPRVTQQLVELKNKLQELADNVDKVHRDC 118
Query: 575 TISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVN 754
TISNVV STG SG LT+LGL LAPVT VT VS SIV+ V+
Sbjct: 119 TISNVVTHSTGTLSGALTILGLVLAPVTAGASVALSATGIGLGAAAAVTAVSTSIVEHVS 178
Query: 755 SSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKAN 934
S AE +AS+LMS K +V+ E L KS PQIV T+ + + NI A++ +AN
Sbjct: 179 RSSAENKASQLMSIGIKKWKVLLEVL-KSNPQIVDTTEKLAKAEKHLEINIHAMETGEAN 237
Query: 935 PRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVK 1114
P A NA +++ G+++ + V+ F+GT +A+TK ARI G ATAG+ LL+DVGFLVK
Sbjct: 238 PDSAVNANIYLSPGRIAAPAIQQVEAGFKGTAVAVTKGARIAGAATAGLFLLVDVGFLVK 297
Query: 1115 ESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ*GLSPPPPEQCRDT 1273
ES+HL GAKA SAE LRQ+A+ T+IY+ LQ +PP PEQC+ +
Sbjct: 298 ESMHLHDGAKAASAENLRQRARELERKLEELTQIYKCLQEDPTPPTPEQCQQS 350
>ref|XP_002687724.1| PREDICTED: apolipoprotein L2-like, partial [Bos taurus].
Length = 440
Score = 278 bits (710), Expect = 1e-74
Identities = 164/341 (48%), Positives = 216/341 (63%)
Frame = +2
Query: 251 ESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLAL 430
E F E+V E + +SREEL LLLTE +K A LSRE+ +AL EYL EL+ DLA
Sbjct: 29 EIFFEDVAECLWDILSREELLLLLTE--FLKKIEVNAGLSREDMNALHEYLNELKRDLAG 86
Query: 431 EDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGA 610
+++++L ++QL+R RFL++FPRV ++ KL LA VDKVHRDCTISNVV STG
Sbjct: 87 KEQETLPKEQLDRKRFLKKFPRVTQQLVELKNKLQELADNVDKVHRDCTISNVVTHSTGT 146
Query: 611 ASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLM 790
SG LT+LGL LAPVT VT VS SIV+ V+ S AE +AS+LM
Sbjct: 147 LSGALTILGLVLAPVTAGASVALSATGIGLGAAAAVTAVSTSIVEHVSRSSAENKASQLM 206
Query: 791 STSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMT 970
S K +V+ E L KS PQIV T+ + + NI A++ +ANP A NA +++
Sbjct: 207 SIGIKKWKVLLEVL-KSNPQIVDTTEKLAKAEKHLEINIHAMETGEANPDSAVNANIYLS 265
Query: 971 AGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAE 1150
G+++ + V+ F+GT +A+TK ARI G ATAG+ LLMDVGFLVKES+HL GAKA
Sbjct: 266 PGRIAAPAIQQVEAGFKGTAVAVTKGARIAGAATAGLFLLMDVGFLVKESMHLHDGAKAA 325
Query: 1151 SAERLRQQAQXXXXXXXXXTRIYESLQ*GLSPPPPEQCRDT 1273
SAE LRQ+A+ T+IY+ LQ +PPPPEQC+ +
Sbjct: 326 SAENLRQRARELERKLEELTQIYKCLQEDPTPPPPEQCQQS 366
>ref|NP_001093803.1| apolipoprotein L, 3-like [Bos taurus].
Length = 321
Score = 274 bits (701), Expect = 1e-73
Identities = 159/339 (46%), Positives = 212/339 (62%)
Frame = +2
Query: 215 MSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALR 394
MSS+ P+DHSES+SF ++V EYF+ +V E+LQ LLTE K WE FVTEA+LSRE+AD LR
Sbjct: 1 MSSEVPKDHSESQSFFDDVLEYFQGSVRWEQLQFLLTEDKPWENFVTEANLSREQADVLR 60
Query: 395 EYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDC 574
EYL +++T LA ED+D L + Q ++ RFL+EFP+VK E++ I KLH LA VDKVHRDC
Sbjct: 61 EYLTKVQTVLAGEDQDRLQKYQQKKERFLKEFPQVKEELKESIKKLHELADNVDKVHRDC 120
Query: 575 TISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVN 754
TISNVVA+STG ASG L++LGL LAP T VTG+S +V+ VN
Sbjct: 121 TISNVVASSTGIASGTLSILGLVLAPFTGGLSLGLSAAGIGLGAASAVTGISTMVVENVN 180
Query: 755 SSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKAN 934
S AE +A + N AE + N + + G++IRAI++A+ N
Sbjct: 181 LSSAETQAGHI-----NTAE-------------IKCYVNDLYQVKDFGRHIRAIRVARGN 222
Query: 935 PRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVK 1114
P L A+ +T GQV V++ + V F GT LA T+ ARI G + +++ +DV LVK
Sbjct: 223 PELLPTAQHCITTGQVLVQSAQQVSTHFRGTALAATRGARIGGGVLSALSMGLDVYSLVK 282
Query: 1115 ESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
++ LQ+GAK SAE +RQ+AQ T IYESLQ
Sbjct: 283 DAQELQEGAKTASAENMRQKAQELEKELEKLTWIYESLQ 321
>ref|XP_002687725.1| PREDICTED: apolipoprotein L, 3-like [Bos taurus].
Length = 657
Score = 271 bits (694), Expect = 8e-73
Identities = 162/351 (46%), Positives = 217/351 (61%)
Frame = +2
Query: 176 ERKGDP*DPAAATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVT 355
E KG DPAAA MSS D SESE+ + V E+ + V+ ++L +LL + W+ FV
Sbjct: 3 EPKGHLRDPAAAIMSSIDLFYCSESETVFQVVVEH--SQVTEKKLMVLL---RNWKIFVV 57
Query: 356 EADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLH 535
+A + REEA AL EYL L+T+L+++ D+L QDQL+R R L+E +K +E K+H
Sbjct: 58 KASIPREEAKALYEYLNRLKTNLSVKAPDTLQQDQLDRKRLLEEIAMMKQALEKDTEKIH 117
Query: 536 ALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXX 715
A A VDKVH+DCTIS VVA STGA SGIL+++GLALAP+T
Sbjct: 118 AFADNVDKVHKDCTISKVVAHSTGAVSGILSIVGLALAPLTMGATLPLLATGLGLGIAAT 177
Query: 716 VTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRI 895
VT VS SIV++VN+S AE + ++L+S + +VI + L KS I K FI L I
Sbjct: 178 VTNVSTSIVERVNTSSAETKTNQLLSRDLKRWKVIEDVLHKSKVHINLAKKLFISSLKII 237
Query: 896 GKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATA 1075
G++++ IK+ K +P L A K F+T G+ +R V KTF G L M K ARI G+ +
Sbjct: 238 GESLKFIKVIKGSPALTAQVKFFITNGRTFIRGSIQVPKTFGGVALTMAKGARIAGIVMS 297
Query: 1076 GVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESL 1228
+ L++DVGFLVKESIHL GAKAESAE+LRQQAQ T I+E+L
Sbjct: 298 SIGLVIDVGFLVKESIHLHDGAKAESAEKLRQQAQELESTLEFVTEIHENL 348
>ref|XP_592110.5| PREDICTED: apolipoprotein L, 3-like [Bos taurus].
Length = 547
Score = 271 bits (694), Expect = 8e-73
Identities = 162/351 (46%), Positives = 217/351 (61%)
Frame = +2
Query: 176 ERKGDP*DPAAATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVT 355
E KG DPAAA MSS D SESE+ + V E+ + V+ ++L +LL + W+ FV
Sbjct: 3 EPKGHLRDPAAAIMSSIDLFYCSESETVFQVVVEH--SQVTEKKLMVLL---RNWKIFVV 57
Query: 356 EADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLH 535
+A + REEA AL EYL L+T+L+++ D+L QDQL+R R L+E +K +E K+H
Sbjct: 58 KASIPREEAKALYEYLNRLKTNLSVKAPDTLQQDQLDRKRLLEEIAMMKQALEKDTEKIH 117
Query: 536 ALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXX 715
A A VDKVH+DCTIS VVA STGA SGIL+++GLALAP+T
Sbjct: 118 AFADNVDKVHKDCTISKVVAHSTGAVSGILSIVGLALAPLTMGATLPLLATGLGLGIAAT 177
Query: 716 VTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRI 895
VT VS SIV++VN+S AE + ++L+S + +VI + L KS I K FI L I
Sbjct: 178 VTNVSTSIVERVNTSSAETKTNQLLSRDLKRWKVIEDVLHKSKVHINLAKKLFISSLKII 237
Query: 896 GKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATA 1075
G++++ IK+ K +P L A K F+T G+ +R V KTF G L M K ARI G+ +
Sbjct: 238 GESLKFIKVIKGSPALTAQVKFFITNGRTFIRGSIQVPKTFGGVALTMAKGARIAGIVMS 297
Query: 1076 GVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESL 1228
+ L++DVGFLVKESIHL GAKAESAE+LRQQAQ T I+E+L
Sbjct: 298 SIGLVIDVGFLVKESIHLHDGAKAESAEKLRQQAQELESTLEFVTEIHENL 348
>ref|XP_001254057.3| PREDICTED: apolipoprotein L, 3-like [Bos taurus].
Length = 605
Score = 271 bits (694), Expect = 8e-73
Identities = 162/351 (46%), Positives = 217/351 (61%)
Frame = +2
Query: 176 ERKGDP*DPAAATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVT 355
E KG DPAAA MSS D SESE+ + V E+ + V+ ++L +LL + W+ FV
Sbjct: 3 EPKGHLRDPAAAIMSSIDLFYCSESETVFQVVVEH--SQVTEKKLMVLL---RNWKIFVV 57
Query: 356 EADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLH 535
+A + REEA AL EYL L+T+L+++ D+L QDQL+R R L+E +K +E K+H
Sbjct: 58 KASIPREEAKALYEYLNRLKTNLSVKAPDTLQQDQLDRKRLLEEIAMMKQALEKDTEKIH 117
Query: 536 ALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXX 715
A A VDKVH+DCTIS VVA STGA SGIL+++GLALAP+T
Sbjct: 118 AFADNVDKVHKDCTISKVVAHSTGAVSGILSIVGLALAPLTMGATLPLLATGLGLGIAAT 177
Query: 716 VTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRI 895
VT VS SIV++VN+S AE + ++L+S + +VI + L KS I K FI L I
Sbjct: 178 VTNVSTSIVERVNTSSAETKTNQLLSRDLKRWKVIEDVLHKSKVHINLAKKLFISSLKII 237
Query: 896 GKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATA 1075
G++++ IK+ K +P L A K F+T G+ +R V KTF G L M K ARI G+ +
Sbjct: 238 GESLKFIKVIKGSPALTAQVKFFITNGRTFIRGSIQVPKTFGGVALTMAKGARIAGIVMS 297
Query: 1076 GVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESL 1228
+ L++DVGFLVKESIHL GAKAESAE+LRQQAQ T I+E+L
Sbjct: 298 SIGLVIDVGFLVKESIHLHDGAKAESAEKLRQQAQELESTLEFVTEIHENL 348
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,793,280
Number of extensions: 1478244
Number of successful extensions: 6133
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 6073
Number of HSP's successfully gapped: 21
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003599
(1383 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853063.1| PREDICTED: similar to Apolipoprotein-L3 (Apolip... 199 5e-51
Alignment gi|XP_853058.1| PREDICTED: similar to apolipoprotein L, 3 (pred... 177 2e-44
Alignment gi|XP_538403.2| PREDICTED: similar to apolipoprotein L6 [Canis ... 152 1e-36
Alignment gi|XP_531749.2| PREDICTED: similar to apolipoprotein L5 [Canis ... 129 7e-30
>ref|XP_853063.1| PREDICTED: similar to Apolipoprotein-L3 (Apolipoprotein L-III)
(ApoL-III) (TNF-inducible protein CG12-1) (CG12_1) [Canis
familiaris].
Length = 343
Score = 199 bits (506), Expect = 5e-51
Identities = 123/330 (37%), Positives = 187/330 (56%)
Frame = +2
Query: 242 SESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETD 421
+E++SF+E+ EYF++TV+RE L LL + WEKFV E LSRE+ADALRE L +LE D
Sbjct: 26 TENKSFIEDAIEYFQDTVNREVLHFLLINHETWEKFVAETSLSREDADALREGLNDLEGD 85
Query: 422 LALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATS 601
+ +ED+ R +FL FP+VK+E+E I +L A +VD+VH CTI+N+VA+S
Sbjct: 86 MDIEDEGQ------AREKFLNVFPQVKVELEGYIKRLRECADEVDQVHEGCTITNIVASS 139
Query: 602 TGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREAS 781
TGAA+G L + GL L PV T V+ SIV+ + S A E
Sbjct: 140 TGAATGPLGIHGLGLVPVIGGLSPETLVAGVGLGAASDATQVTTSIVEGSHESPATAE-- 197
Query: 782 RLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKR 961
T+ +K EV+++ L ++ I SL + ++ L R ++IR ++L + + A
Sbjct: 198 ----TTLDKEEVVAKVLHENWSSISSLALDSMKVLARAARDIRNLRLGRFTCQPVVAAAG 253
Query: 962 FMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGA 1141
F+TA VK+ G++ A+ + AR++G A+ G+ +LM+ LV +S +L + A
Sbjct: 254 FLTANTALGLGWAQVKRVVRGSLRAIARGARVVGTASLGLFILMEAVSLVFKSGNLHEEA 313
Query: 1142 KAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
K SAE +R++AQ IYESL+
Sbjct: 314 KTWSAESMREEAQELNRKLELLKEIYESLK 343
>ref|XP_853058.1| PREDICTED: similar to apolipoprotein L, 3 (predicted) [Canis
familiaris].
Length = 297
Score = 177 bits (450), Expect = 2e-44
Identities = 113/246 (45%), Positives = 149/246 (60%)
Frame = +2
Query: 371 REEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAK 550
REEAD LRE L +L + +ED+D L R FL FP++K+E+E +I KL LA +
Sbjct: 60 REEADILREGLNDLTGHMDMEDED------LARETFLNVFPQLKVELEKRIRKLRRLADE 113
Query: 551 VDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVS 730
VDKVH+ CTISN+VA+STGAASG+L VLGL LAPVT VT +S
Sbjct: 114 VDKVHKRCTISNMVASSTGAASGLLGVLGLGLAPVTAGFSLTLLTTGSMLGVAATVTHMS 173
Query: 731 ASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIR 910
S+V+ N+S A EAS L+S ++ + + L + +I+SL + I+ L +I KN
Sbjct: 174 TSLVEYSNTSSARAEASDLVS-GIDQGDRVGLDLQNTILKILSL-GSVIRNLKKIAKNNS 231
Query: 911 AIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALL 1090
A K+A P L A+R MT VSVR+ LV+K F GT LAMTK R +GMA++GV L
Sbjct: 232 AKKVATVQPHLVDKARRLMTGRSVSVRSGNLVQKAFGGTALAMTKGIRFLGMASSGVFLK 291
Query: 1091 MDVGFL 1108
MDV L
Sbjct: 292 MDVASL 297
>ref|XP_538403.2| PREDICTED: similar to apolipoprotein L6 [Canis familiaris].
Length = 394
Score = 152 bits (383), Expect = 1e-36
Identities = 92/285 (32%), Positives = 147/285 (51%)
Frame = +2
Query: 374 EEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKV 553
+E LRE +++ + DL+ E+ RFL+E+P +K E+EA I KLHALA +
Sbjct: 42 QEGILLREGMQQQDRDLSAEE-----------IRFLEEYPIIKEEMEANIRKLHALADHI 90
Query: 554 DKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSA 733
D HR +N+V +S SG + LGLALAPVT TG+
Sbjct: 91 DATHRTQIKTNMVTSSVAVVSGAMNFLGLALAPVTAGGSLMLSAAGKVLGTAATTTGIVT 150
Query: 734 SIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRA 913
++V+ + + + + S L+ T + A + + ++ + + + I A
Sbjct: 151 NVVEHLQNQDIQAQVSNLVPTHSHNAREAEVENAVCAMTVRKVAYDYRSKIKDVKRTIHA 210
Query: 914 IKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLM 1093
+++A+ PRL AKR MT GQVS R R V++ F+GT L MT++AR++G AG++L
Sbjct: 211 LQIARERPRLVTAAKRLMTTGQVSARRSRQVRRAFKGTTLLMTRSARLMGSVMAGLSLHG 270
Query: 1094 DVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESL 1228
D+ L++ L++GA + AE LR +A +R+YESL
Sbjct: 271 DLTTLLRNWKQLKEGASSTLAEELRAEAWELETKLTELSRLYESL 315
>ref|XP_531749.2| PREDICTED: similar to apolipoprotein L5 [Canis familiaris].
Length = 362
Score = 129 bits (324), Expect = 7e-30
Identities = 101/317 (31%), Positives = 154/317 (48%), Gaps = 11/317 (3%)
Frame = +2
Query: 371 REEADALREYLKELETDLALEDKDSLLQDQLERTR-FLQEFPRVKLEIEAQIGKLHALAA 547
R+EA+ L L E +L + S+L++ E + FL FP K ++ I +LHALA
Sbjct: 7 RDEANILYHMLME---ELMQNKEASMLENLSEEEKIFLFWFPLQKNNLKKNIRELHALAD 63
Query: 548 KVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGV 727
+VD H+ T +++VA+S+G SG++++LG ALAPVT T
Sbjct: 64 QVDAKHKMLTKTSLVASSSGTVSGVMSILGFALAPVTVGGSLMLSAAGLGLGVAAVATNT 123
Query: 728 SASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNI 907
SI+++ ++S A ASRL+ SE G S L + + K +
Sbjct: 124 LTSILERNSNSAARDRASRLVPVPAMTVHDSSEERGCSEISAALLCIDKCVRAFKNLKEL 183
Query: 908 RAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVAL 1087
RA ++AKAN A +FM G + +++ +V+ MTK AR++G A AG++L
Sbjct: 184 RAYQMAKANSGFMAKVNKFMAMGHIPFWRTGGLQRAVGASVMPMTKVARLLGAAGAGLSL 243
Query: 1088 LMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESL---Q*GLSPP--- 1249
+ D+ L + HL++GAKAE+AE LR A T+ YE + Q L P
Sbjct: 244 MQDLRSLQQSWTHLEEGAKAETAEELRAVAGALEQELDQLTQRYELIIWRQGQLKSPLLS 303
Query: 1250 ----PPEQCRDTSGANT 1288
P + RDT G T
Sbjct: 304 QEHARPGRARDTQGWGT 320
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,042,188
Number of extensions: 1518428
Number of successful extensions: 6263
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6245
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003599
(1383 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663615.1| apolipoprotein L3 isoform 1 [Homo sapiens]. 250 2e-66
Alignment gi|NP_112092.1| apolipoprotein L2 [Homo sapiens]. 249 6e-66
Alignment gi|NP_663612.1| apolipoprotein L2 [Homo sapiens]. 249 6e-66
Alignment gi|NP_085146.2| apolipoprotein L4 isoform 1 [Homo sapiens]. 198 1e-50
Alignment gi|NP_663693.1| apolipoprotein L4 isoform 2 precursor [Homo sap... 198 1e-50
Alignment gi|NP_001130013.1| apolipoprotein L1 isoform c precursor [Homo ... 195 1e-49
Alignment gi|NP_001130012.1| apolipoprotein L1 isoform a precursor [Homo ... 195 1e-49
Alignment gi|NP_663318.1| apolipoprotein L1 isoform b precursor [Homo sap... 195 1e-49
Alignment gi|NP_003652.2| apolipoprotein L1 isoform a precursor [Homo sap... 195 1e-49
Alignment gi|NP_085144.1| apolipoprotein L6 [Homo sapiens]. 159 4e-39
>ref|NP_663615.1| apolipoprotein L3 isoform 1 [Homo sapiens].
Length = 402
Score = 250 bits (639), Expect = 2e-66
Identities = 147/341 (43%), Positives = 206/341 (60%)
Frame = +2
Query: 206 AATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEAD 385
A + S R E + F EE T+YFR VS LQ+LLT +AW++FVT A+L R+EAD
Sbjct: 62 AGSCSHSFKRSFLEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEAD 121
Query: 386 ALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVH 565
AL E LK+L T A+ED+ +D+ R FL+EFP+VK +I+ I KL ALA +++VH
Sbjct: 122 ALYEALKKLRTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVH 181
Query: 566 RDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVD 745
R CTISNVV++STGAASGI+++ GL LAP T VTG++ SIV+
Sbjct: 182 RGCTISNVVSSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVE 241
Query: 746 KVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLA 925
+S AE EASRL +TS ++ +V E + TP ++SL N+ + IG IRAI+ A
Sbjct: 242 HSYTSSAEAEASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQA 301
Query: 926 KANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGF 1105
+A RL +T ++S + ++T GT A+++ ARI+ T+G+ L +DV
Sbjct: 302 RARARLP------VTTWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVN 355
Query: 1106 LVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESL 1228
LV ES HL +GAK+ SAE LR+QAQ T+IY+ L
Sbjct: 356 LVYESKHLHEGAKSASAEELRRQAQELEENLMELTQIYQRL 396
>ref|NP_112092.1| apolipoprotein L2 [Homo sapiens].
Length = 337
Score = 249 bits (635), Expect = 6e-66
Identities = 141/331 (42%), Positives = 201/331 (60%)
Frame = +2
Query: 245 ESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDL 424
ES F+E+ +YF++ VSRE L LLT+ +AW FV A+L R+EAD LR+ L +L + +
Sbjct: 4 ESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLASHM 63
Query: 425 ALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATST 604
++DK+ +DQ R FL+EFPR+K E+E I KL ALA +V++VHR TI+NVV+ S
Sbjct: 64 VMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSV 123
Query: 605 GAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASR 784
G SGILT+LGL LAP T V G++ S+V+ VN A +A
Sbjct: 124 GTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARN 183
Query: 785 LMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRF 964
L + N A+V+ E +G +TP +++L N+ Q IG+NIRAI+ A+ANP+L A A
Sbjct: 184 LDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPP 243
Query: 965 MTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAK 1144
G++S V++ EG AM++ I+G AT G+ LL+DV L ES HL +GAK
Sbjct: 244 HIIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAK 303
Query: 1145 AESAERLRQQAQXXXXXXXXXTRIYESLQ*G 1237
+ESAE L+++AQ T+I+E LQ G
Sbjct: 304 SESAEELKKRAQELEGKLNFLTKIHEMLQPG 334
>ref|NP_663612.1| apolipoprotein L2 [Homo sapiens].
Length = 337
Score = 249 bits (635), Expect = 6e-66
Identities = 141/331 (42%), Positives = 201/331 (60%)
Frame = +2
Query: 245 ESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDL 424
ES F+E+ +YF++ VSRE L LLT+ +AW FV A+L R+EAD LR+ L +L + +
Sbjct: 4 ESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLASHM 63
Query: 425 ALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATST 604
++DK+ +DQ R FL+EFPR+K E+E I KL ALA +V++VHR TI+NVV+ S
Sbjct: 64 VMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNSV 123
Query: 605 GAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASR 784
G SGILT+LGL LAP T V G++ S+V+ VN A +A
Sbjct: 124 GTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARN 183
Query: 785 LMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRF 964
L + N A+V+ E +G +TP +++L N+ Q IG+NIRAI+ A+ANP+L A A
Sbjct: 184 LDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPP 243
Query: 965 MTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAK 1144
G++S V++ EG AM++ I+G AT G+ LL+DV L ES HL +GAK
Sbjct: 244 HIIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAK 303
Query: 1145 AESAERLRQQAQXXXXXXXXXTRIYESLQ*G 1237
+ESAE L+++AQ T+I+E LQ G
Sbjct: 304 SESAEELKKRAQELEGKLNFLTKIHEMLQPG 334
>ref|NP_085146.2| apolipoprotein L4 isoform 1 [Homo sapiens].
Length = 348
Score = 198 bits (503), Expect = 1e-50
Identities = 123/331 (37%), Positives = 187/331 (56%)
Frame = +2
Query: 245 ESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDL 424
E + F EEV EYF+ VS L++LLT +AW++FV A+L REEADAL E LK L +
Sbjct: 28 EKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTPYV 87
Query: 425 ALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATST 604
A+EDKD ++Q R FL+EFP+++ +I+ I +L +A +++KVHR C I+NVV+ ST
Sbjct: 88 AIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIANVVSGST 147
Query: 605 GAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASR 784
GIL+V+G+ LAP T G+++SIV+ + AE ASR
Sbjct: 148 ----GILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASR 203
Query: 785 LMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRF 964
L +TS ++ E + + L TP ++S +F + I ++ ++ +KA A R+
Sbjct: 204 LTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAWRY 263
Query: 965 MTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAK 1144
+ V +T + K AR +G AT+GV +++DV LV++S+ L +GAK
Sbjct: 264 VPINVVE------TLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGAK 317
Query: 1145 AESAERLRQQAQXXXXXXXXXTRIYESLQ*G 1237
+ESAE LRQ AQ T I++SL+ G
Sbjct: 318 SESAESLRQWAQELEENLNELTHIHQSLKAG 348
>ref|NP_663693.1| apolipoprotein L4 isoform 2 precursor [Homo sapiens].
Length = 351
Score = 198 bits (503), Expect = 1e-50
Identities = 123/331 (37%), Positives = 187/331 (56%)
Frame = +2
Query: 245 ESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDL 424
E + F EEV EYF+ VS L++LLT +AW++FV A+L REEADAL E LK L +
Sbjct: 31 EKKRFTEEVIEYFQKKVSPVHLKILLTSDEAWKRFVRVAELPREEADALYEALKNLTPYV 90
Query: 425 ALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATST 604
A+EDKD ++Q R FL+EFP+++ +I+ I +L +A +++KVHR C I+NVV+ ST
Sbjct: 91 AIEDKDMQQKEQQFREWFLKEFPQIRWKIQESIERLRVIANEIEKVHRGCVIANVVSGST 150
Query: 605 GAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASR 784
GIL+V+G+ LAP T G+++SIV+ + AE ASR
Sbjct: 151 ----GILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASR 206
Query: 785 LMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRF 964
L +TS ++ E + + L TP ++S +F + I ++ ++ +KA A R+
Sbjct: 207 LTATSTDQLEALRDILRDITPNVLSFALDFDEATKMIANDVHTLRRSKATVGRPLIAWRY 266
Query: 965 MTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAK 1144
+ V +T + K AR +G AT+GV +++DV LV++S+ L +GAK
Sbjct: 267 VPINVVE------TLRTRGAPTRIVRKVARNLGKATSGVLVVLDVVNLVQDSLDLHKGAK 320
Query: 1145 AESAERLRQQAQXXXXXXXXXTRIYESLQ*G 1237
+ESAE LRQ AQ T I++SL+ G
Sbjct: 321 SESAESLRQWAQELEENLNELTHIHQSLKAG 351
>ref|NP_001130013.1| apolipoprotein L1 isoform c precursor [Homo sapiens].
Length = 380
Score = 195 bits (495), Expect = 1e-49
Identities = 126/347 (36%), Positives = 191/347 (55%), Gaps = 2/347 (0%)
Frame = +2
Query: 197 DPAAATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSRE 376
D AA TM DP ES F+E+ +YF+ VS + L LLLT+ +AW FV A+L R
Sbjct: 36 DWAAGTM---DP----ESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAELPRN 88
Query: 377 EADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVD 556
EAD LR+ L L + ++DK+ + Q R FL+EFPR+K E+E I +L ALA V
Sbjct: 89 EADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRALADGVQ 148
Query: 557 KVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSAS 736
KVH+ TI+NVV+ S +SGILT++G+ LAP T +TG+++S
Sbjct: 149 KVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALTGITSS 208
Query: 737 IVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAI 916
+D + +A L+ S +K + + E LG++ +SL N Q IGK+IRA+
Sbjct: 209 TMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGKDIRAL 268
Query: 917 KLAKANPRLA--ANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALL 1090
+ A+AN + A+A R +S + V++ E ++L M++ ++ +A L+
Sbjct: 269 RRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFFLV 328
Query: 1091 MDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
+DV +LV ES HL +GAK+E+AE L++ AQ Y+ LQ
Sbjct: 329 LDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQ 375
>ref|NP_001130012.1| apolipoprotein L1 isoform a precursor [Homo sapiens].
Length = 398
Score = 195 bits (495), Expect = 1e-49
Identities = 126/347 (36%), Positives = 191/347 (55%), Gaps = 2/347 (0%)
Frame = +2
Query: 197 DPAAATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSRE 376
D AA TM DP ES F+E+ +YF+ VS + L LLLT+ +AW FV A+L R
Sbjct: 54 DWAAGTM---DP----ESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAELPRN 106
Query: 377 EADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVD 556
EAD LR+ L L + ++DK+ + Q R FL+EFPR+K E+E I +L ALA V
Sbjct: 107 EADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRALADGVQ 166
Query: 557 KVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSAS 736
KVH+ TI+NVV+ S +SGILT++G+ LAP T +TG+++S
Sbjct: 167 KVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALTGITSS 226
Query: 737 IVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAI 916
+D + +A L+ S +K + + E LG++ +SL N Q IGK+IRA+
Sbjct: 227 TMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGKDIRAL 286
Query: 917 KLAKANPRLA--ANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALL 1090
+ A+AN + A+A R +S + V++ E ++L M++ ++ +A L+
Sbjct: 287 RRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFFLV 346
Query: 1091 MDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
+DV +LV ES HL +GAK+E+AE L++ AQ Y+ LQ
Sbjct: 347 LDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQ 393
>ref|NP_663318.1| apolipoprotein L1 isoform b precursor [Homo sapiens].
Length = 414
Score = 195 bits (495), Expect = 1e-49
Identities = 126/347 (36%), Positives = 191/347 (55%), Gaps = 2/347 (0%)
Frame = +2
Query: 197 DPAAATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSRE 376
D AA TM DP ES F+E+ +YF+ VS + L LLLT+ +AW FV A+L R
Sbjct: 70 DWAAGTM---DP----ESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAELPRN 122
Query: 377 EADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVD 556
EAD LR+ L L + ++DK+ + Q R FL+EFPR+K E+E I +L ALA V
Sbjct: 123 EADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRALADGVQ 182
Query: 557 KVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSAS 736
KVH+ TI+NVV+ S +SGILT++G+ LAP T +TG+++S
Sbjct: 183 KVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALTGITSS 242
Query: 737 IVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAI 916
+D + +A L+ S +K + + E LG++ +SL N Q IGK+IRA+
Sbjct: 243 TMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGKDIRAL 302
Query: 917 KLAKANPRLA--ANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALL 1090
+ A+AN + A+A R +S + V++ E ++L M++ ++ +A L+
Sbjct: 303 RRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFFLV 362
Query: 1091 MDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
+DV +LV ES HL +GAK+E+AE L++ AQ Y+ LQ
Sbjct: 363 LDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQ 409
>ref|NP_003652.2| apolipoprotein L1 isoform a precursor [Homo sapiens].
Length = 398
Score = 195 bits (495), Expect = 1e-49
Identities = 126/347 (36%), Positives = 191/347 (55%), Gaps = 2/347 (0%)
Frame = +2
Query: 197 DPAAATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSRE 376
D AA TM DP ES F+E+ +YF+ VS + L LLLT+ +AW FV A+L R
Sbjct: 54 DWAAGTM---DP----ESSIFIEDAIKYFKEKVSTQNLLLLLTDNEAWNGFVAAAELPRN 106
Query: 377 EADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVD 556
EAD LR+ L L + ++DK+ + Q R FL+EFPR+K E+E I +L ALA V
Sbjct: 107 EADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKSELEDNIRRLRALADGVQ 166
Query: 557 KVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSAS 736
KVH+ TI+NVV+ S +SGILT++G+ LAP T +TG+++S
Sbjct: 167 KVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALTGITSS 226
Query: 737 IVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAI 916
+D + +A L+ S +K + + E LG++ +SL N Q IGK+IRA+
Sbjct: 227 TMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLAGNTYQLTRGIGKDIRAL 286
Query: 917 KLAKANPRLA--ANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALL 1090
+ A+AN + A+A R +S + V++ E ++L M++ ++ +A L+
Sbjct: 287 RRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEMSRGVKLTDVAPVSFFLV 346
Query: 1091 MDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
+DV +LV ES HL +GAK+E+AE L++ AQ Y+ LQ
Sbjct: 347 LDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNYKILQ 393
>ref|NP_085144.1| apolipoprotein L6 [Homo sapiens].
Length = 343
Score = 159 bits (403), Expect = 4e-39
Identities = 103/289 (35%), Positives = 152/289 (52%)
Frame = +2
Query: 365 LSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALA 544
L R+E DA L D+ L+D D ++++ FL+EFPR+K +++ I KL ALA
Sbjct: 15 LQRDEDDA------PLCEDVELQDGDLSPEEKI----FLREFPRLKEDLKGNIDKLRALA 64
Query: 545 AKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTG 724
+DK H+ T +N+VATST SG++++LGLALAP T VT
Sbjct: 65 DDIDKTHKKFTKANMVATSTAVISGVMSLLGLALAPATGGGSLLLSTAGQGLATAAGVTS 124
Query: 725 VSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKN 904
+ + +++ + A+ A ++ T + E + N L KN
Sbjct: 125 IVSGTLERSKNKEAQARAEDILPTYDQEDREDEEEKADYVTAAGKIIYNLRNTLKYAKKN 184
Query: 905 IRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVA 1084
+RA +ANPRLA KR +T GQVS R+R V+K F GT LAMTKNAR++G + +
Sbjct: 185 VRAFWKLRANPRLANATKRLLTTGQVSSRSRVQVQKAFAGTTLAMTKNARVLGGVMSAFS 244
Query: 1085 LLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
L D+ L KE HL++GA+ + AE LR +A T++Y+SLQ
Sbjct: 245 LGYDLATLSKEWKHLKEGARTKFAEELRAKALELERKLTELTQLYKSLQ 293
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,994,068
Number of extensions: 1490826
Number of successful extensions: 5931
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5891
Number of HSP's successfully gapped: 13
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003599
(1383 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075439.1| apolipoprotein L2 [Mus musculus]. 284 1e-76
Alignment gi|NP_001020019.2| apolipoprotein L 7b [Mus musculus]. 276 2e-74
Alignment gi|NP_001128274.1| apolipoprotein L 7e [Mus musculus]. 273 2e-73
Alignment gi|NP_780600.1| apolipoprotein L 7c [Mus musculus]. 253 3e-67
Alignment gi|NP_001158112.1| apolipoprotein L 7a [Mus musculus]. 235 7e-62
Alignment gi|NP_083695.2| apolipoprotein L 7a [Mus musculus]. 235 7e-62
Alignment gi|NP_001162131.1| apolipoprotein L 9b [Mus musculus]. 192 7e-49
Alignment gi|NP_776104.1| apolipoprotein L 9b [Mus musculus]. 192 7e-49
Alignment gi|NP_001156355.1| apolipoprotein L 9a [Mus musculus]. 187 1e-47
Alignment gi|NP_776147.1| apolipoprotein L 9a [Mus musculus]. 187 1e-47
>ref|NP_001075439.1| apolipoprotein L2 [Mus musculus].
Length = 339
Score = 284 bits (726), Expect = 1e-76
Identities = 163/341 (47%), Positives = 220/341 (64%)
Frame = +2
Query: 215 MSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALR 394
M D D +F+EE EY ++T RE+L+LLLTE AWE FV EA+LSR +AD LR
Sbjct: 1 MDPSDCEDAPGDRTFIEEAAEYLQHTSGREDLRLLLTEDGAWEAFVAEAELSRADADTLR 60
Query: 395 EYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDC 574
+ L L +LA+ED++ L +D + RF+ FP+VKLE+E IGKL LA KVDKVHRDC
Sbjct: 61 DALHALTANLAVEDQERLQRDLQDMERFMDAFPQVKLELEGHIGKLRTLADKVDKVHRDC 120
Query: 575 TISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVDKVN 754
TIS +VA ST SGILT+LGL L PVT VT VS+ IVD +
Sbjct: 121 TISKLVAGSTSTVSGILTLLGLTLVPVTAGISLVLLATGMGLGAAAAVTSVSSGIVDYTS 180
Query: 755 SSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKAN 934
SLA+ EAS L+ST K +++++++ S PQ++SL++N + L I ++I AIKL KAN
Sbjct: 181 RSLAKTEASHLVSTGMAKVKMVADAVVHSGPQVLSLSENCCRVLRCIEQSIYAIKLTKAN 240
Query: 935 PRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVK 1114
P LAA+A G S ++ + VKK F+GT LA+++ ARI+G+ATAGV+L+ DV LVK
Sbjct: 241 PALAASA-----MGSTSAQSGKHVKKAFKGTALAISRRARIMGIATAGVSLVGDVISLVK 295
Query: 1115 ESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ*G 1237
+S +L +G KA+SAE LRQQA+ ++YE LQ G
Sbjct: 296 QSKNLHKGTKAKSAEELRQQARELEEKLEALIQMYEGLQAG 336
>ref|NP_001020019.2| apolipoprotein L 7b [Mus musculus].
Length = 369
Score = 276 bits (707), Expect = 2e-74
Identities = 168/363 (46%), Positives = 212/363 (58%), Gaps = 35/363 (9%)
Frame = +2
Query: 245 ESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDL 424
+ E F+E V EY + +S E+LQLLLTE + W+ FV E DLSREE ALRE L E+ +D
Sbjct: 5 DRECFIETVAEYLLDVISTEDLQLLLTEEETWKHFVAEVDLSREEETALREALAEIFSDP 64
Query: 425 ALEDKDSL---LQDQLERT--------------------------------RFLQEFPRV 499
ED+D L LQD+ ER RFL +PRV
Sbjct: 65 DGEDEDELQNDLQDKNERKEEDALSEALGETVADTDAEDEEEIQNDPWHKERFLDAYPRV 124
Query: 500 KLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXX 679
KLE+E I LHALA KVDKVHRDCTIS VVA+S+ A SG+LT+LGL+LAPVT
Sbjct: 125 KLELEESIRMLHALADKVDKVHRDCTISRVVASSSSAVSGVLTILGLSLAPVTAGVSLAL 184
Query: 680 XXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVS 859
VT VS SIV+KV+ AE +AS+L+ T+ + + + E L +S P+++
Sbjct: 185 SATGLGLGAAAAVTSVSTSIVEKVSVVFAEAKASKLVPTNKDTMKGMKEVLDQSGPRLLF 244
Query: 860 LTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAM 1039
L+ N + L I NI AIKL KANP L NAKR MT G+ S + VK+ F GT LAM
Sbjct: 245 LSMNSFKKLKNIKNNIHAIKLTKANPSLVTNAKRLMTTGKTSTETTKQVKEAFGGTALAM 304
Query: 1040 TKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIY 1219
TK ARI+G AT G LL+D+ LV +S HL +GAKAESA LR QAQ R++
Sbjct: 305 TKGARIMGAATTGFFLLLDIVSLVGDSKHLHEGAKAESAAELRHQAQDLEQKLQELIRVH 364
Query: 1220 ESL 1228
+SL
Sbjct: 365 DSL 367
>ref|NP_001128274.1| apolipoprotein L 7e [Mus musculus].
Length = 369
Score = 273 bits (698), Expect = 2e-73
Identities = 166/363 (45%), Positives = 211/363 (58%), Gaps = 35/363 (9%)
Frame = +2
Query: 245 ESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDL 424
+ E F+E V EY + +S E+LQLLLTE + W+ FV E DLSREE ALRE L E+ +D
Sbjct: 5 DRECFIETVAEYLLDVISTEDLQLLLTEEETWKHFVAEVDLSREEETALREALAEIFSDP 64
Query: 425 ALEDKDSL---LQDQLERT--------------------------------RFLQEFPRV 499
ED+D L LQD+ ER RFL +PRV
Sbjct: 65 DGEDEDELQNDLQDKNERKEEDALSEALGKTVADTDAEDEEEIQNDPWHKERFLDAYPRV 124
Query: 500 KLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXX 679
KLE+E I LHALA KVDKVHRDCTIS VVA+S+ A SG+LT+LGL+LAPVT
Sbjct: 125 KLELEESIRMLHALADKVDKVHRDCTISRVVASSSSAVSGVLTILGLSLAPVTAGVSLAL 184
Query: 680 XXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVS 859
VT VS SIV+KV+ AE +AS+L+ T+ + + + E L +S P+++
Sbjct: 185 SATGLGLGAAAAVTSVSTSIVEKVSVVSAEAKASKLVPTNKDTMKGMKEVLDQSGPRLLF 244
Query: 860 LTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAM 1039
L+ N + L I NI AIKL KANP L NAKR MT G+ + + VK+ F GT LAM
Sbjct: 245 LSMNSFKKLKNIKNNIHAIKLTKANPSLVTNAKRLMTTGKTTTETTKQVKEAFGGTALAM 304
Query: 1040 TKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIY 1219
TK ARI+G AT G LL+D+ V +S HL +GAKAESA LR QAQ R++
Sbjct: 305 TKGARIMGAATTGFFLLLDIVSFVGDSKHLHEGAKAESAAELRHQAQDPEQKLQELIRVH 364
Query: 1220 ESL 1228
+SL
Sbjct: 365 DSL 367
>ref|NP_780600.1| apolipoprotein L 7c [Mus musculus].
Length = 369
Score = 253 bits (645), Expect = 3e-67
Identities = 161/363 (44%), Positives = 209/363 (57%), Gaps = 35/363 (9%)
Frame = +2
Query: 245 ESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDL 424
E + F+ V ++ + S E LQLLLTE + W++FV E DLSREE ALRE L E+ D
Sbjct: 5 ERKRFIPTVAQHLLDRKSLEVLQLLLTEEETWKQFVAEVDLSREEEAALRESLAEIFADP 64
Query: 425 ALEDKDSL---LQDQLERT--------------------------------RFLQEFPRV 499
ED+D L LQD+ ER RFL +P V
Sbjct: 65 DGEDEDELQIDLQDKNERKEEDALSEALTETIADTDAEDEEEIQNDLWHKERFLDAYPWV 124
Query: 500 KLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXX 679
KLEIE I KLHALA KVDKVHRDCTIS VVA+S+ A SG+LT+LGLALAPVT
Sbjct: 125 KLEIEESIRKLHALADKVDKVHRDCTISRVVASSSSAVSGVLTILGLALAPVTAGVSLAL 184
Query: 680 XXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVS 859
VT VS SIV+KV+ AE +A L+ T+ + + I E L +S P+++S
Sbjct: 185 SATGLGLGAAATVTSVSTSIVEKVSVVSAEAKARNLVPTNKDTMKGIIEVLDQSGPRLIS 244
Query: 860 LTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAM 1039
+ N IQ + I K I AI+L+KAN RLA +A+R MT G+ S + + V+K F GT LAM
Sbjct: 245 GSTNTIQNIQGIQKCINAIQLSKANTRLANDARRLMTTGKTSTQTTKQVQKAFGGTTLAM 304
Query: 1040 TKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIY 1219
TK RI+G AT G LL+DV LV++S HL +GAK+++A L+QQA ++
Sbjct: 305 TKGVRIMGAATTGFFLLLDVISLVEDSKHLHEGAKSQTAAELQQQAWNLELKLQELKEVH 364
Query: 1220 ESL 1228
SL
Sbjct: 365 NSL 367
>ref|NP_001158112.1| apolipoprotein L 7a [Mus musculus].
Length = 418
Score = 235 bits (599), Expect = 7e-62
Identities = 153/365 (41%), Positives = 212/365 (58%), Gaps = 6/365 (1%)
Frame = +2
Query: 152 LRSSLTQTERKGDP*DPAAATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEG 331
L+ SL + D D D + E +S E++ E +T +E E
Sbjct: 53 LQESLAEIFADPDGEDEDELQNDLQDKNERKEEDSLSEDLGESVADTDVEDEDGDAEDED 112
Query: 332 KAWE---KFVTEADLSREEADALREYLKELET---DLALEDKDSLLQDQLERTRFLQEFP 493
E + + + + +RE+ D+ E ++ +T D ED++ + D + RFL +P
Sbjct: 113 SDTEDEDRDIEDENSNREDEDSDTED-EDSDTEGEDSNTEDEEEIQNDLWHKERFLDAYP 171
Query: 494 RVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXX 673
+VKLE+E I KLHALA KVDKVHRDCTIS VVA+S+ A SG+L +LGL+LAPVT
Sbjct: 172 QVKLELEEIIRKLHALADKVDKVHRDCTISRVVASSSSAVSGVLIILGLSLAPVTAGVSL 231
Query: 674 XXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQI 853
VT VS SIV+KV+ AE EAS+L+ T+ + + + E L +S P++
Sbjct: 232 ALSATGLGLGAAAAVTSVSTSIVEKVSVVSAEDEASKLVPTNKDTMKGMKEVLDQSGPRL 291
Query: 854 VSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVL 1033
+SL+ + IQ L I K I AI LAKAN RLA NAKR MT G++S RN + V+K F GT L
Sbjct: 292 LSLSTDTIQRLQGIQKCINAIPLAKANTRLANNAKRLMTTGKISARNTKQVQKAFGGTAL 351
Query: 1034 AMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTR 1213
AMTK ARI+G ATAG LL DV LV++S HL +GAK+++A LR+QAQ
Sbjct: 352 AMTKGARIMGAATAGFFLLQDVISLVEDSKHLHEGAKSQTAAELRKQAQDLEQKLQELKE 411
Query: 1214 IYESL 1228
+++SL
Sbjct: 412 VHDSL 416
Score = 68.9 bits (167), Expect = 9e-12
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +2
Query: 236 DHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELE 415
D + E F+E V Y +T S E+L+LLLTE + W+ FV E DLSREE AL+E L E+
Sbjct: 2 DTPDRECFVESVVNYLLDTWSTEDLRLLLTEEETWKHFVAEVDLSREEEAALQESLAEIF 61
Query: 416 TDLALEDKDSL---LQDQLER 469
D ED+D L LQD+ ER
Sbjct: 62 ADPDGEDEDELQNDLQDKNER 82
>ref|NP_083695.2| apolipoprotein L 7a [Mus musculus].
Length = 418
Score = 235 bits (599), Expect = 7e-62
Identities = 153/365 (41%), Positives = 212/365 (58%), Gaps = 6/365 (1%)
Frame = +2
Query: 152 LRSSLTQTERKGDP*DPAAATMSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEG 331
L+ SL + D D D + E +S E++ E +T +E E
Sbjct: 53 LQESLAEIFADPDGEDEDELQNDLQDKNERKEEDSLSEDLGESVADTDVEDEDGDAEDED 112
Query: 332 KAWE---KFVTEADLSREEADALREYLKELET---DLALEDKDSLLQDQLERTRFLQEFP 493
E + + + + +RE+ D+ E ++ +T D ED++ + D + RFL +P
Sbjct: 113 SDTEDEDRDIEDENSNREDEDSDTED-EDSDTEGEDSNTEDEEEIQNDLWHKERFLDAYP 171
Query: 494 RVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXX 673
+VKLE+E I KLHALA KVDKVHRDCTIS VVA+S+ A SG+L +LGL+LAPVT
Sbjct: 172 QVKLELEEIIRKLHALADKVDKVHRDCTISRVVASSSSAVSGVLIILGLSLAPVTAGVSL 231
Query: 674 XXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQI 853
VT VS SIV+KV+ AE EAS+L+ T+ + + + E L +S P++
Sbjct: 232 ALSATGLGLGAAAAVTSVSTSIVEKVSVVSAEDEASKLVPTNKDTMKGMKEVLDQSGPRL 291
Query: 854 VSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVL 1033
+SL+ + IQ L I K I AI LAKAN RLA NAKR MT G++S RN + V+K F GT L
Sbjct: 292 LSLSTDTIQRLQGIQKCINAIPLAKANTRLANNAKRLMTTGKISARNTKQVQKAFGGTAL 351
Query: 1034 AMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTR 1213
AMTK ARI+G ATAG LL DV LV++S HL +GAK+++A LR+QAQ
Sbjct: 352 AMTKGARIMGAATAGFFLLQDVISLVEDSKHLHEGAKSQTAAELRKQAQDLEQKLQELKE 411
Query: 1214 IYESL 1228
+++SL
Sbjct: 412 VHDSL 416
Score = 68.9 bits (167), Expect = 9e-12
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +2
Query: 236 DHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELE 415
D + E F+E V Y +T S E+L+LLLTE + W+ FV E DLSREE AL+E L E+
Sbjct: 2 DTPDRECFVESVVNYLLDTWSTEDLRLLLTEEETWKHFVAEVDLSREEEAALQESLAEIF 61
Query: 416 TDLALEDKDSL---LQDQLER 469
D ED+D L LQD+ ER
Sbjct: 62 ADPDGEDEDELQNDLQDKNER 82
>ref|NP_001162131.1| apolipoprotein L 9b [Mus musculus].
Length = 310
Score = 192 bits (487), Expect = 7e-49
Identities = 121/307 (39%), Positives = 173/307 (56%)
Frame = +2
Query: 308 LQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQE 487
L L+ E AW+ FV++A LSRE A AL + L+EL LA+ D+ L + R +FL+
Sbjct: 7 LYSLVAEDGAWQAFVSKAKLSRERAVALHKALRELTALLAIADRGRLQKGLKGREKFLKV 66
Query: 488 FPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXX 667
FPR+K E+ I +LHALA +K+HR CTISNVVA S AAS IL++LGL LAPVT
Sbjct: 67 FPRLKAELVEHISQLHALADHAEKLHRGCTISNVVADSFSAASDILSLLGLFLAPVTAEG 126
Query: 668 XXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTP 847
VT V+ SIV++ + L E EA+ + +A S+ +
Sbjct: 127 SLVLSATGLGLGVAATVTDVATSIVEETSRVLDEVEAALTGTHVLGEA---GTSVARIVN 183
Query: 848 QIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGT 1027
+I T++ + L + +++ A++L +ANPRL +A+ T G +S + V+ EGT
Sbjct: 184 KIPQATRDITRDLEALEQHMNALRLVRANPRLEEDARILATTGSISAQRAMQVRARLEGT 243
Query: 1028 VLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXX 1207
LAM+ ARI ATAG AL DV LVKES HL +G+ +ESAE LR+ A+
Sbjct: 244 PLAMSNEARIQRAATAGAALWSDVDSLVKESKHLYEGSASESAEALRKLARELEEKLEGL 303
Query: 1208 TRIYESL 1228
Y+++
Sbjct: 304 MEFYKTI 310
>ref|NP_776104.1| apolipoprotein L 9b [Mus musculus].
Length = 310
Score = 192 bits (487), Expect = 7e-49
Identities = 121/307 (39%), Positives = 173/307 (56%)
Frame = +2
Query: 308 LQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQE 487
L L+ E AW+ FV++A LSRE A AL + L+EL LA+ D+ L + R +FL+
Sbjct: 7 LYSLVAEDGAWQAFVSKAKLSRERAVALHKALRELTALLAIADRGRLQKGLKGREKFLKV 66
Query: 488 FPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXX 667
FPR+K E+ I +LHALA +K+HR CTISNVVA S AAS IL++LGL LAPVT
Sbjct: 67 FPRLKAELVEHISQLHALADHAEKLHRGCTISNVVADSFSAASDILSLLGLFLAPVTAEG 126
Query: 668 XXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTP 847
VT V+ SIV++ + L E EA+ + +A S+ +
Sbjct: 127 SLVLSATGLGLGVAATVTDVATSIVEETSRVLDEVEAALTGTHVLGEA---GTSVARIVN 183
Query: 848 QIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGT 1027
+I T++ + L + +++ A++L +ANPRL +A+ T G +S + V+ EGT
Sbjct: 184 KIPQATRDITRDLEALEQHMNALRLVRANPRLEEDARILATTGSISAQRAMQVRARLEGT 243
Query: 1028 VLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXX 1207
LAM+ ARI ATAG AL DV LVKES HL +G+ +ESAE LR+ A+
Sbjct: 244 PLAMSNEARIQRAATAGAALWSDVDSLVKESKHLYEGSASESAEALRKLARELEEKLEGL 303
Query: 1208 TRIYESL 1228
Y+++
Sbjct: 304 MEFYKTI 310
>ref|NP_001156355.1| apolipoprotein L 9a [Mus musculus].
Length = 310
Score = 187 bits (476), Expect = 1e-47
Identities = 117/307 (38%), Positives = 170/307 (55%)
Frame = +2
Query: 308 LQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQE 487
L L+ E W+ FV++A LSRE A AL + L+EL LA+ D+ L + R +FL+
Sbjct: 7 LYSLVAEDGVWQAFVSKAKLSRERAVALHKALRELTALLAIADRGRLQKGLKGREKFLKV 66
Query: 488 FPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXX 667
FPR+K E+ I +LHALA +K+HR CTISNVVA S AAS IL++LGL LAPVT
Sbjct: 67 FPRLKAELVEHISQLHALADHAEKLHRGCTISNVVADSFSAASDILSLLGLFLAPVTAEG 126
Query: 668 XXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTP 847
VT V+ SIV++ + L E EA+ + +A + + P
Sbjct: 127 SLVLSATGLGLGVAATVTDVATSIVEETSRVLDEVEAAPTGTHVLGEAGTSVDRIASKVP 186
Query: 848 QIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGT 1027
Q T++ + L + +++ A++L +ANPRL +A+ T G +S + V+ + +GT
Sbjct: 187 Q---ATRDITRDLEALEQHMNALRLVRANPRLEEDARILATTGSISAQRAMQVRASLKGT 243
Query: 1028 VLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXX 1207
LAM+ ARI AG AL DV LVKES HL +G+ +ESAE LR+ A+
Sbjct: 244 PLAMSNEARIQRATAAGAALWSDVDSLVKESKHLYEGSASESAEALRKLARELEEKLEGL 303
Query: 1208 TRIYESL 1228
Y+++
Sbjct: 304 MEFYKTI 310
>ref|NP_776147.1| apolipoprotein L 9a [Mus musculus].
Length = 310
Score = 187 bits (476), Expect = 1e-47
Identities = 117/307 (38%), Positives = 170/307 (55%)
Frame = +2
Query: 308 LQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQE 487
L L+ E W+ FV++A LSRE A AL + L+EL LA+ D+ L + R +FL+
Sbjct: 7 LYSLVAEDGVWQAFVSKAKLSRERAVALHKALRELTALLAIADRGRLQKGLKGREKFLKV 66
Query: 488 FPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXX 667
FPR+K E+ I +LHALA +K+HR CTISNVVA S AAS IL++LGL LAPVT
Sbjct: 67 FPRLKAELVEHISQLHALADHAEKLHRGCTISNVVADSFSAASDILSLLGLFLAPVTAEG 126
Query: 668 XXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTP 847
VT V+ SIV++ + L E EA+ + +A + + P
Sbjct: 127 SLVLSATGLGLGVAATVTDVATSIVEETSRVLDEVEAAPTGTHVLGEAGTSVDRIASKVP 186
Query: 848 QIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGT 1027
Q T++ + L + +++ A++L +ANPRL +A+ T G +S + V+ + +GT
Sbjct: 187 Q---ATRDITRDLEALEQHMNALRLVRANPRLEEDARILATTGSISAQRAMQVRASLKGT 243
Query: 1028 VLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXX 1207
LAM+ ARI AG AL DV LVKES HL +G+ +ESAE LR+ A+
Sbjct: 244 PLAMSNEARIQRATAAGAALWSDVDSLVKESKHLYEGSASESAEALRKLARELEEKLEGL 303
Query: 1208 TRIYESL 1228
Y+++
Sbjct: 304 MEFYKTI 310
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,701,782
Number of extensions: 1247116
Number of successful extensions: 5193
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5157
Number of HSP's successfully gapped: 24
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003599
(1383 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126115.2| PREDICTED: apolipoprotein L3-like, partial [... 471 e-133
Alignment gi|XP_003355410.1| PREDICTED: apolipoprotein L3-like [Sus scrof... 286 1e-77
Alignment gi|XP_003355392.1| PREDICTED: apolipoprotein L3 [Sus scrofa]. 286 2e-77
Alignment gi|XP_003126117.1| PREDICTED: apolipoprotein L6-like [Sus scrof... 139 5e-33
>ref|XP_003126115.2| PREDICTED: apolipoprotein L3-like, partial [Sus scrofa].
Length = 348
Score = 471 bits (1213), Expect = e-133
Identities = 258/287 (89%), Positives = 259/287 (90%)
Frame = +2
Query: 371 REEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAK 550
REEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAK
Sbjct: 62 REEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAK 121
Query: 551 VDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVS 730
VDKVHRDCTISNVVATSTGAASGILTVLGLALAPVT VTGVS
Sbjct: 122 VDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTAGFSLALSATGLGLGVAASVTGVS 181
Query: 731 ASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIR 910
ASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIR
Sbjct: 182 ASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIR 241
Query: 911 AIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALL 1090
AIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALL
Sbjct: 242 AIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALL 301
Query: 1091 MDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ 1231
MDVGFLVKESIHLQQGAKAESAERLRQQAQ TRIYE+LQ
Sbjct: 302 MDVGFLVKESIHLQQGAKAESAERLRQQAQELEKKLEELTRIYENLQ 348
>ref|XP_003355410.1| PREDICTED: apolipoprotein L3-like [Sus scrofa].
Length = 322
Score = 286 bits (733), Expect = 1e-77
Identities = 163/328 (49%), Positives = 211/328 (64%)
Frame = +2
Query: 308 LQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQE 487
++ LLT+ ++ + E L REEADAL EYL+ELETDL++++K+ QL+R RFL
Sbjct: 1 MKRLLTQ--VLDRILAEIRLPREEADALCEYLEELETDLSMKNKE-----QLDRKRFLTR 53
Query: 488 FPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXX 667
FP +KLE+E +IGKLHALA K DKVHRDCTIS VVATS A S +LT++GL+LAPVT
Sbjct: 54 FPHIKLELEERIGKLHALADKADKVHRDCTISKVVATSADAVSSVLTIVGLSLAPVTAGV 113
Query: 668 XXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTP 847
VT VS IVDK++ SL E EAS L+ST K +V+ + L K+TP
Sbjct: 114 SLALSATGLGLRIAASVTSVSTDIVDKISLSLRETEASCLLSTDIKKWQVVVQVLVKNTP 173
Query: 848 QIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGT 1027
+IV + + + R+ NIRA++ K NP L A++ T + + K F G+
Sbjct: 174 KIVDNARVLAKAIERVETNIRAMERVKVNPCLEAHSNLLWTDEGIEALSSTQRKAAFRGS 233
Query: 1028 VLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXX 1207
LAMTKNARI+G+ATAGV LL+DVGFLVKESIHL +GAK + AE LRQ+AQ
Sbjct: 234 ALAMTKNARIMGIATAGVGLLVDVGFLVKESIHLHKGAKTQLAEALRQRAQKLEGKLEEL 293
Query: 1208 TRIYESLQ*GLSPPPPEQCRDTSGANTQ 1291
T IY+SLQ G +PPPPEQC D + Q
Sbjct: 294 TCIYDSLQEGPTPPPPEQCTDQTHVQGQ 321
>ref|XP_003355392.1| PREDICTED: apolipoprotein L3 [Sus scrofa].
Length = 322
Score = 286 bits (731), Expect = 2e-77
Identities = 163/328 (49%), Positives = 210/328 (64%)
Frame = +2
Query: 308 LQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQE 487
++ LLT+ ++ + E L REEADAL EYL+ELETDL++++K+ QL+R RFL
Sbjct: 1 MKRLLTQ--VLDRILAEIRLPREEADALCEYLEELETDLSMKNKE-----QLDRKRFLTR 53
Query: 488 FPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTXXX 667
FP +KLE+E +IGKLHALA K DKVHRDCTIS VVATS A S +LT++GL+LAPVT
Sbjct: 54 FPHIKLELEERIGKLHALADKADKVHRDCTISKVVATSADAVSSVLTIVGLSLAPVTAGV 113
Query: 668 XXXXXXXXXXXXXXXXVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTP 847
VT VS IVDK++ SL E EAS L+ST K V+ + L K+TP
Sbjct: 114 SLALSATGLGLRIAASVTSVSTDIVDKISLSLRETEASCLLSTDIKKWHVVVQVLVKNTP 173
Query: 848 QIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGT 1027
+IV + + + R+ NIRA++ K NP L A++ T + + K F G+
Sbjct: 174 KIVDNARVLAKAIERVETNIRAMERVKVNPCLEAHSNLLWTDEGIEALSSTQRKAAFRGS 233
Query: 1028 VLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXX 1207
LAMTKNARI+G+ATAGV LL+DVGFLVKESIHL +GAK + AE LRQ+AQ
Sbjct: 234 ALAMTKNARIMGIATAGVGLLVDVGFLVKESIHLHKGAKTQLAEALRQRAQKLERKLEEL 293
Query: 1208 TRIYESLQ*GLSPPPPEQCRDTSGANTQ 1291
T IY+SLQ G +PPPPEQC D + Q
Sbjct: 294 TCIYDSLQEGPTPPPPEQCTDQTHVQGQ 321
>ref|XP_003126117.1| PREDICTED: apolipoprotein L6-like [Sus scrofa].
Length = 394
Score = 139 bits (349), Expect = 5e-33
Identities = 98/287 (34%), Positives = 146/287 (50%), Gaps = 1/287 (0%)
Frame = +2
Query: 386 ALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVH 565
AL E +K+ E+DL++E++ FL+EFP +K +E + +L ALAA +D H
Sbjct: 33 ALHEDMKQPESDLSVEERI-----------FLEEFPIMKEGLEEDLRRLRALAAHIDTTH 81
Query: 566 RDCTISNVVATSTGAASGILTVLGLALAPVTXXXXXXXXXXXXXXXXXXXVTGVSASIVD 745
+ T ++ VA + SG +++LG ALAP T T + A I++
Sbjct: 82 KIVTKTSAVANAFAVLSGAVSILGSALAPATAGGSLVLSVTGRVLGTRGEATSILAKILE 141
Query: 746 KVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPR-IGKNIRAIKL 922
+ A+ + LM T + L ++ P V+ K +Q R I I A ++
Sbjct: 142 CFYNQEAQAQVGSLMPTC-------GQELWQAGPISVTAAKKVVQNCGRTIEMGICAFQM 194
Query: 923 AKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVG 1102
A A+PRLA AKR +T GQVS + R V++ EG V M NA ++ MA AG L D+
Sbjct: 195 ASAHPRLATAAKRLLTTGQVSAQRSRQVQRALEGVVQLMKANAPLLRMAMAGFYLSADLL 254
Query: 1103 FLVKESIHLQQGAKAESAERLRQQAQXXXXXXXXXTRIYESLQ*GLS 1243
L+K+ L++GAK E AE LR QA+ T+ +ESLQ LS
Sbjct: 255 SLLKDWKQLKEGAKTELAEELRVQARALERKLKELTQCFESLQQKLS 301
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,056,336
Number of extensions: 952641
Number of successful extensions: 3993
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3978
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003599
(1383 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1939 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1939 bits (978), Expect = 0.0
Identities = 1005/1014 (99%)
Strand = Plus / Plus
Query: 370 cagggaagaggcagatgcactgcgtgagtatctgaaggagctggaaacagacttggcctt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275334 cagggaagaggcagatgcactgcgtgagtatctgaaggagctggaaacagacttggcctt 9275393
Query: 430 ggaggacaaagactccctcctacaagaccagctggagagaacgaggtttttgcaggagtt 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275394 ggaggacaaagactccctcctacaagaccagctggagagaacgaggtttttgcaggagtt 9275453
Query: 490 tccccgagtgaaactggagatcgaggcgcaaataggaaagctgcatgcgcttgcggccaa 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275454 tccccgagtgaaactggagatcgaggcgcaaataggaaagctgcatgcgcttgcggccaa 9275513
Query: 550 ggttgacaaggtgcacagggactgcaccatctccaacgtggtggccacctccaccggtgc 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275514 ggttgacaaggtgcacagggactgcaccatctccaacgtggtggccacctccaccggtgc 9275573
Query: 610 tgcgtctggcatcctgaccgttcttggtctggctctggcacccgtgacagcagggttcag 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275574 tgcgtctggcatcctgaccgttcttggtctggctctggcacccgtgacagcagggttcag 9275633
Query: 670 tctggcactctctgccactgggttagggctgggagtagcggcttctgtgactggtgtgtc 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275634 tctggcactctctgccactgggttagggctgggagtagcggcttctgtgactggtgtgtc 9275693
Query: 730 cgccagcattgtggacaaggtcaacagttcattagcagaaagagaagccagtcgcctcat 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275694 cgccagcattgtggacaaggtcaacagttcattagcagaaagagaagccagtcgcctcat 9275753
Query: 790 gtccaccagcttcaacaaagcggaggtgatttcagagtctctgggcaagagcacacccca 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275754 gtccaccagcttcaacaaagcggaggtgatttcagagtctctgggcaagagcacacccca 9275813
Query: 850 aattgtgtccttaacaaagaatttcatccaaggcttgccacgcattgggaagaatatccg 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275814 aattgtgtccttaacaaagaatttcatccaaggcttgccacgcattgggaagaatatccg 9275873
Query: 910 ggccatcaagctggccaaagccaaccctcgcttagcagccaatgccaagcgcttcatgac 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275874 ggccatcaagctggccaaagccaaccctcgcttagcagccaatgccaagcgcttcatgac 9275933
Query: 970 cgctgggcaagtctcagttcgaaacagaaggctggtgaagaaaacgtttgaagggacagt 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275934 cgctgggcaagtctcagttcgaaacagaaggctggtgaagaaaacgtttgaagggacagt 9275993
Query: 1030 tctggcaatgaccaaaaatgcccggatcatcggtatggctactgcaggtgttgcccttct 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9275994 tctggcaatgaccaaaaatgcccggatcatcggtatggctactgcaggtgttgcccttct 9276053
Query: 1090 gatggacgtgggcttcctggtgaaagagtcaatccacttgcagcagggggcaaaggcaga 1149
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9276054 gatggacgtgggcttcctcgtgaaagagtcaatccacttgcagcagggggcaaaggcaga 9276113
Query: 1150 gtcagcagaaaggctgagacagcaggcccaggagctggagaagaagctggaggagctcac 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9276114 gtcagcagaaaggctgagacagcaggcccaggagctggagaagaagctggaggagcttac 9276173
Query: 1210 caggatctatgagagtctgcagtaaggcctgagtccgccacccccagagcagtgcagaga 1269
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9276174 caggatctatgagaatctgcagtaaggcctgactccgccacccccagagcagtgcagaga 9276233
Query: 1270 cacgtccggggccaacacgcagtggtacctttggagcaaagagacgtggacataaaatga 1329
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 9276234 cacgtccggggccaacacgcagtggtaccttggaggcaaagagacgtggacataaaatga 9276293
Query: 1330 taaaagtggggaagctgagctagtctctctgactcctcttttggtctattttct 1383
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 9276294 taaaagtggggaagctgagctggtctctctgactcttcttttggtctattttct 9276347
Score = 268 bits (135), Expect = 7e-69
Identities = 138/139 (99%)
Strand = Plus / Plus
Query: 1 ttttctctttcgattcttcagctctatctgggcccagagggtgtgtctggttattgcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9313150 ttttctctttcgattcttcagctctatctgggcccagagggtgtgtctggttattgcaga 9313209
Query: 61 gccgcacagctggggaccagatcctcacggtgagaggagctgctttgtgttcaccctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9313210 gccgcacagctggggaccagatcctcacggtgagaggagctgctttgtgctcaccctcag 9313269
Query: 121 cccaaggaagactcctggg 139
|||||||||||||||||||
Sbjct: 9313270 cccaaggaagactcctggg 9313288
Score = 208 bits (105), Expect = 6e-51
Identities = 213/249 (85%)
Strand = Plus / Minus
Query: 500 aaactggagatcgaggcgcaaataggaaagctgcatgcgcttgcggccaaggttgacaag 559
||||||||| |||||| || ||||||||||||||||||||||||| ||||| ||||||
Sbjct: 9296815 aaactggagctcgaggagcgtataggaaagctgcatgcgcttgcggacaaggctgacaaa 9296756
Query: 560 gtgcacagggactgcaccatctccaacgtggtggccacctccaccggtgctgcgtctggc 619
|| ||||| ||||||||||||||||| ||||||||||||||| | | |||| ||| ||
Sbjct: 9296755 gtacacagagactgcaccatctccaaagtggtggccacctccgctgacgctgtgtccagc 9296696
Query: 620 atcctgaccgttcttggtctggctctggcacccgtgacagcagggttcagtctggcactc 679
|||||||| | | |||||| |||||||||| ||||| |||||| |||| || ||||||
Sbjct: 9296695 gtcctgaccatcgtcggtctgtctctggcacctgtgactgcaggggtcagcctagcactc 9296636
Query: 680 tctgccactgggttagggctgggagtagcggcttctgtgactggtgtgtccgccagcatt 739
|||||||||||||| |||||| || |||||||||||||||| |||||||| || ||||
Sbjct: 9296635 tctgccactgggttggggctgagaatagcggcttctgtgaccagtgtgtccaccgacatt 9296576
Query: 740 gtggacaag 748
|||||||||
Sbjct: 9296575 gtggacaag 9296567
Score = 208 bits (105), Expect = 6e-51
Identities = 213/249 (85%)
Strand = Plus / Plus
Query: 500 aaactggagatcgaggcgcaaataggaaagctgcatgcgcttgcggccaaggttgacaag 559
||||||||| |||||| || ||||||||||||||||||||||||| ||||| ||||||
Sbjct: 9330306 aaactggagctcgaggagcgtataggaaagctgcatgcgcttgcggacaaggctgacaaa 9330365
Query: 560 gtgcacagggactgcaccatctccaacgtggtggccacctccaccggtgctgcgtctggc 619
|| ||||| ||||||||||||||||| ||||||||||||||| | | |||| ||| ||
Sbjct: 9330366 gtacacagagactgcaccatctccaaagtggtggccacctccgctgacgctgtgtccagc 9330425
Query: 620 atcctgaccgttcttggtctggctctggcacccgtgacagcagggttcagtctggcactc 679
|||||||| | | |||||| |||||||||| ||||| |||||| |||| || ||||||
Sbjct: 9330426 gtcctgaccatcgtcggtctgtctctggcacctgtgactgcaggggtcagcctagcactc 9330485
Query: 680 tctgccactgggttagggctgggagtagcggcttctgtgactggtgtgtccgccagcatt 739
|||||||||||||| |||||| || |||||||||||||||| |||||||| || ||||
Sbjct: 9330486 tctgccactgggttggggctgagaatagcggcttctgtgaccagtgtgtccaccgacatt 9330545
Query: 740 gtggacaag 748
|||||||||
Sbjct: 9330546 gtggacaag 9330554
Score = 206 bits (104), Expect = 2e-50
Identities = 203/236 (86%)
Strand = Plus / Minus
Query: 1030 tctggcaatgaccaaaaatgcccggatcatcggtatggctactgcaggtgttgcccttct 1089
|||||||||||||||||| ||||||||||| || || || ||||||||||| | ||||||
Sbjct: 9296285 tctggcaatgaccaaaaacgcccggatcatgggaatagccactgcaggtgtcggccttct 9296226
Query: 1090 gatggacgtgggcttcctggtgaaagagtcaatccacttgcagcagggggcaaaggcaga 1149
| |||||||||||||||||||||| ||||||||||||||||| | ||||||||| || |
Sbjct: 9296225 ggtggacgtgggcttcctggtgaaggagtcaatccacttgcacaaaggggcaaagacaca 9296166
Query: 1150 gtcagcagaaaggctgagacagcaggcccaggagctggagaagaagctggaggagctcac 1209
|| || ||| |||||| |||| |||||| | ||||||| |||| |||||||||||||
Sbjct: 9296165 gttggctgaagcgctgaggcagcgtgcccagaaactggagaggaagttggaggagctcac 9296106
Query: 1210 caggatctatgagagtctgcagtaaggcctgagtccgccacccccagagcagtgca 1265
| | |||||||| ||||||||| | |||| || |||||||||||||||||||||||
Sbjct: 9296105 ctgcatctatgacagtctgcaggagggcccgactccgccacccccagagcagtgca 9296050
Score = 198 bits (100), Expect = 6e-48
Identities = 202/236 (85%)
Strand = Plus / Plus
Query: 1030 tctggcaatgaccaaaaatgcccggatcatcggtatggctactgcaggtgttgcccttct 1089
|||||||||||||||||| ||||||||||| || || || ||||||||||| | ||||||
Sbjct: 9330836 tctggcaatgaccaaaaacgcccggatcatgggaatagccactgcaggtgtcggccttct 9330895
Query: 1090 gatggacgtgggcttcctggtgaaagagtcaatccacttgcagcagggggcaaaggcaga 1149
| |||||||||||||||||||||| ||||||||||||||||| | ||||||||| || |
Sbjct: 9330896 ggtggacgtgggcttcctggtgaaggagtcaatccacttgcacaaaggggcaaagacaca 9330955
Query: 1150 gtcagcagaaaggctgagacagcaggcccaggagctggagaagaagctggaggagctcac 1209
|| || ||| |||||| |||| |||||| | |||||| |||| |||||||||||||
Sbjct: 9330956 gttggctgaagcgctgaggcagcgtgcccagaaactggaggggaagttggaggagctcac 9331015
Query: 1210 caggatctatgagagtctgcagtaaggcctgagtccgccacccccagagcagtgca 1265
| | |||||||| ||||||||| | |||| || |||||||||||||||||||||||
Sbjct: 9331016 ctgcatctatgacagtctgcaggagggcccgactccgccacccccagagcagtgca 9331071
Score = 121 bits (61), Expect = 1e-24
Identities = 80/84 (95%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 142 gaagccacacctccgttccagcctgacccaga--cggagcggaagggagatccctgagac 199
||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 9322685 gaagccacacctc-gttccagcctgacccagaaacggagcggaagggagattcctgagac 9322743
Query: 200 cctgcagctgccaccatgagctca 223
||||||||||||||||||||||||
Sbjct: 9322744 cctgcagctgccaccatgagctca 9322767
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,204,781
Number of extensions: 295
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 9
Length of query: 1383
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1362
Effective length of database: 2,808,413,156
Effective search space: 3825058718472
Effective search space used: 3825058718472
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)