Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003601
(1066 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069711.1| phytanoyl-CoA dioxygenase domain-containing ... 500 e-141
Alignment gi|NP_776567.1| phytanoyl-CoA dioxygenase, peroxisomal precurso... 56 6e-08
>ref|NP_001069711.1| phytanoyl-CoA dioxygenase domain-containing protein 1 [Bos taurus].
Length = 291
Score = 500 bits (1287), Expect = e-141
Identities = 250/292 (85%), Positives = 262/292 (89%)
Frame = +1
Query: 73 MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ 252
MA LSPSQLQKFQEDGFLVLEGFLSA EC AMQ+RI E+VA+MDVP HCRTEFSTQEEEQ
Sbjct: 1 MACLSPSQLQKFQEDGFLVLEGFLSADECEAMQRRIDEIVAKMDVPLHCRTEFSTQEEEQ 60
Query: 253 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS 432
LRAQGSTDYFLSSGDKIRFFFEKGVFD++GNFLVPPEK+INKIGHALHA DP+FRC+THS
Sbjct: 61 LRAQGSTDYFLSSGDKIRFFFEKGVFDKQGNFLVPPEKSINKIGHALHALDPIFRCVTHS 120
Query: 433 PKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDA 612
KVQALARSLGLQMPVVVQSMYIFKQPHFGGEV+PHQDASFLYTEPLGRVLG+W+ALEDA
Sbjct: 121 HKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVAPHQDASFLYTEPLGRVLGLWIALEDA 180
Query: 613 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 792
LENGCLWFIPGSHTGGVSRRMVR PAGS PGTSFLGSEP RDN+LFVPTPV RGALVLI
Sbjct: 181 MLENGCLWFIPGSHTGGVSRRMVRTPAGSVPGTSFLGSEPIRDNSLFVPTPVLRGALVLI 240
Query: 793 HGEVVHKSEQNLSDRSRQAYTFHLMGRR*HPGKPRKLAPGPHPNSPFPPL*T 948
HGEVVHKSEQNLSDRSRQAYTFHLM P P P PFPPL T
Sbjct: 241 HGEVVHKSEQNLSDRSRQAYTFHLMEAAGTIWSPDNWLQ-PTPELPFPPLYT 291
>ref|NP_776567.1| phytanoyl-CoA dioxygenase, peroxisomal precursor [Bos taurus].
Length = 337
Score = 55.8 bits (133), Expect = 6e-08
Identities = 63/270 (23%), Positives = 105/270 (38%), Gaps = 3/270 (1%)
Frame = +1
Query: 82 LSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRA 261
LS Q + ++E+GFLV++ LV++ D+ R R EF ++++
Sbjct: 53 LSLEQRKFYEENGFLVIKN----------------LVSDADIQRF-RNEFERICRKEVKP 95
Query: 262 QGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHSPKV 441
G + + V K + VP EK ++K+ + +FR T P++
Sbjct: 96 LGLS-------------VMRDVTITKSEY-VPSEKVVSKV-QDFQEDEELFRYCT-LPEI 139
Query: 442 QALARSLGLQMPVVVQSMYIFKQPHFGGEVSPH---QDASFLYTEPLGRVLGMWMALEDA 612
+ + + I K P + S H QD + P ++ W A+E
Sbjct: 140 LKYVECFTGPNIMAMHTXLINKPPDSXKKTSRHPLHQDLHYFPFRPSNSIVCAWTAMEHI 199
Query: 613 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 792
NGCL +PG+H G + G F G + NN V + +G V
Sbjct: 200 DRNNGCLVVLPGTHKGPLQPHDYPQWEGGV-NIMFHGIQDYDKNNARVHLVMEKGDTVFF 258
Query: 793 HGEVVHKSEQNLSDRSRQAYTFHLMGRR*H 882
H ++H S +N S R+A + H H
Sbjct: 259 HPLLIHGSGRNKSQGFRKAISCHFADANCH 288
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,186,460
Number of extensions: 1884330
Number of successful extensions: 9674
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9490
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003601
(1066 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851122.1| PREDICTED: similar to phytanoyl-CoA dioxygenase... 489 e-138
Alignment gi|XP_849313.1| PREDICTED: similar to phytanoyl-CoA hydroxylase... 58 2e-08
Alignment gi|XP_535184.2| PREDICTED: similar to phytanoyl-CoA hydroxylase... 55 1e-07
Alignment gi|XP_849299.1| PREDICTED: similar to phytanoyl-CoA hydroxylase... 54 3e-07
>ref|XP_851122.1| PREDICTED: similar to phytanoyl-CoA dioxygenase domain containing 1
(predicted) [Canis familiaris].
Length = 312
Score = 489 bits (1260), Expect = e-138
Identities = 246/296 (83%), Positives = 260/296 (87%)
Frame = +1
Query: 61 C*VLMANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQ 240
C +LMA LSPSQLQKFQEDGFLVLEGFLSA ECVAMQQRIGELVA+MDVP HCR EFSTQ
Sbjct: 18 CLILMACLSPSQLQKFQEDGFLVLEGFLSADECVAMQQRIGELVADMDVPLHCRIEFSTQ 77
Query: 241 EEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRC 420
EEEQLR+QG DYFLSSGDKIRFFFEKGVFDEKGNFLVPPEK+INKIGHALHAHDPVFR
Sbjct: 78 EEEQLRSQGKKDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRH 137
Query: 421 ITHSPKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMA 600
+THSPKVQALA+SLGLQMPVVVQSMYIFKQPHFGGEVSPHQD++FLYTEPLGRVLG+W+A
Sbjct: 138 VTHSPKVQALAKSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDSTFLYTEPLGRVLGIWIA 197
Query: 601 LEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGA 780
LEDATLENGCLWFIPGSHTGGVSRRMVRA AG T FLGSEP D++LFVPTPV+RGA
Sbjct: 198 LEDATLENGCLWFIPGSHTGGVSRRMVRAFAGLKLNTRFLGSEPVWDDSLFVPTPVQRGA 257
Query: 781 LVLIHGEVVHKSEQNLSDRSRQAYTFHLMGRR*HPGKPRKLAPGPHPNSPFPPL*T 948
L+LIHGEVVHKSEQNLSDRSR AYTFHLM P P PFPPL T
Sbjct: 258 LILIHGEVVHKSEQNLSDRSRHAYTFHLMESLGTMWSPENWLQ-PTAELPFPPLYT 312
>ref|XP_849313.1| PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis
familiaris].
Length = 438
Score = 57.8 bits (138), Expect = 2e-08
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 3/263 (1%)
Frame = +1
Query: 82 LSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRA 261
LS Q + ++E+GFLV++ +S A+ + + R CR E ++ +R
Sbjct: 153 LSLEQRKFYEENGFLVIKNLVSDADIQRFRDQF---------ERICRGEVKPEQMMIMR- 202
Query: 262 QGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHSPKV 441
D ++ + I P E+ I+KI + +FR T P++
Sbjct: 203 ----DVSIAKSEYI-----------------PSERMISKIQY-FEDDKELFRYCT-LPEI 239
Query: 442 QALARSLGLQMPVVVQSMYIFKQPHFGGEVSPH---QDASFLYTEPLGRVLGMWMALEDA 612
+ + +M I K P G + S H QD + P +++ W A+E
Sbjct: 240 LKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPNNKIVCAWTAMEHI 299
Query: 613 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 792
NGCL +PG+H G + G F G + +N+ V + +G V
Sbjct: 300 DRNNGCLCVLPGTHKGPLKPHDYPNWEGGV-NLMFYGIQDYDENSPCVHLVMEKGDTVFF 358
Query: 793 HGEVVHKSEQNLSDRSRQAYTFH 861
H ++H S N + R+A + H
Sbjct: 359 HPLLIHGSGWNKTQGYRKAISCH 381
>ref|XP_535184.2| PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis
familiaris].
Length = 540
Score = 55.1 bits (131), Expect = 1e-07
Identities = 61/265 (23%), Positives = 103/265 (38%), Gaps = 3/265 (1%)
Frame = +1
Query: 76 ANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQL 255
A LS Q + ++E+GFLV++ +S A+ + + R CR E ++ +
Sbjct: 253 AVLSLEQRKFYEENGFLVIKSLVSDADIQRFRDQF---------ERICRGEVKPEQMMIM 303
Query: 256 RAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHSP 435
R D ++ + I P E+ I+KI +FR T P
Sbjct: 304 R-----DVSIAKSEYI-----------------PSERMISKI-QDFQEDKELFRYCT-LP 339
Query: 436 KVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPH---QDASFLYTEPLGRVLGMWMALE 606
++ + + +M I K P G + S H QD + P +++ W A+E
Sbjct: 340 EILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLLYFPFRPSNKIVCAWTAME 399
Query: 607 DATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALV 786
NGCL +PG+H G + G F G + + V + +G V
Sbjct: 400 HIDRNNGCLCVLPGTHKGPLKPHDYPQWEGGV-NLMFYGIQDYDEKTPRVHLVMEKGDTV 458
Query: 787 LIHGEVVHKSEQNLSDRSRQAYTFH 861
H ++H S N + R+A + H
Sbjct: 459 FFHPLLIHGSGWNRTQGYRKAISCH 483
>ref|XP_849299.1| PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis
familiaris].
Length = 269
Score = 53.5 bits (127), Expect = 3e-07
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 3/173 (1%)
Frame = +1
Query: 352 VPPEKAINKIGHALHAHDPVFRCITHSPKVQALARSLGLQMPVVVQSMYIFKQPHFGGEV 531
+P E+ I+KI +FR T ++ + G + + + +M I K P G +
Sbjct: 35 IPSERMISKI-QGFQEDKELFRYCTLPEILKYVVCFTGPNI-MAMHAMLINKPPDSGKKT 92
Query: 532 SPH---QDASFLYTEPLGRVLGMWMALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSA 702
S H QD + P +++ W A+E NGCL PG+H G + G
Sbjct: 93 SRHPLHQDLHYFPFRPSNKIVCAWTAMEHIDRNNGCLCVFPGTHKGYLKPHNYPQWEGGV 152
Query: 703 PGTSFLGSEPARDNNLFVPTPVRRGALVLIHGEVVHKSEQNLSDRSRQAYTFH 861
F G + +N+ V + +G V H ++H S N + R+A + H
Sbjct: 153 -NLMFYGIQDYDENSPRVHLVMEKGDTVFFHPLLIHGSGWNRTQGYRKAISCH 204
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,072,809
Number of extensions: 1873782
Number of successful extensions: 9887
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9762
Number of HSP's successfully gapped: 4
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003601
(1066 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094346.1| phytanoyl-CoA dioxygenase domain-containing ... 506 e-143
Alignment gi|NP_001094347.1| phytanoyl-CoA dioxygenase domain-containing ... 457 e-128
Alignment gi|NP_777593.2| phytanoyl-CoA dioxygenase domain-containing pro... 273 e-123
Alignment gi|NP_006205.1| phytanoyl-CoA dioxygenase, peroxisomal isoform ... 58 1e-08
Alignment gi|NP_001032626.1| phytanoyl-CoA dioxygenase, peroxisomal isofo... 55 8e-08
>ref|NP_001094346.1| phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a
[Homo sapiens].
Length = 291
Score = 506 bits (1303), Expect = e-143
Identities = 254/292 (86%), Positives = 264/292 (90%)
Frame = +1
Query: 73 MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ 252
MA LSPSQLQKFQ+DGFLVLEGFLSA ECVAMQQRIGE+VAEMDVP HCRTEFSTQEEEQ
Sbjct: 1 MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ 60
Query: 253 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS 432
LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEK+INKIGHALHAHDPVF+ ITHS
Sbjct: 61 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS 120
Query: 433 PKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDA 612
KVQ LARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLG+W+A+EDA
Sbjct: 121 FKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDA 180
Query: 613 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 792
TLENGCLWFIPGSHT GVSRRMVRAP GSAPGTSFLGSEPARDN+LFVPTPV+RGALVLI
Sbjct: 181 TLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLI 240
Query: 793 HGEVVHKSEQNLSDRSRQAYTFHLMGRR*HPGKPRKLAPGPHPNSPFPPL*T 948
HGEVVHKS+QNLSDRSRQAYTFHLM P P PFP L T
Sbjct: 241 HGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQ-PTAELPFPQLYT 291
>ref|NP_001094347.1| phytanoyl-CoA dioxygenase domain-containing protein 1 isoform c
[Homo sapiens].
Length = 270
Score = 457 bits (1175), Expect = e-128
Identities = 234/292 (80%), Positives = 244/292 (83%)
Frame = +1
Query: 73 MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ 252
MA LSPSQLQKFQ+DGFLVLEGFLSA ECVAMQQRIGE+VAEMDVP HCRTEFSTQEEEQ
Sbjct: 1 MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ 60
Query: 253 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS 432
LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEK+INKIGHALHAHDPVF+ ITHS
Sbjct: 61 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS 120
Query: 433 PKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDA 612
KVQ QPHFGGEVSPHQDASFLYTEPLGRVLG+W+A+EDA
Sbjct: 121 FKVQ---------------------QPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDA 159
Query: 613 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 792
TLENGCLWFIPGSHT GVSRRMVRAP GSAPGTSFLGSEPARDN+LFVPTPV+RGALVLI
Sbjct: 160 TLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLI 219
Query: 793 HGEVVHKSEQNLSDRSRQAYTFHLMGRR*HPGKPRKLAPGPHPNSPFPPL*T 948
HGEVVHKS+QNLSDRSRQAYTFHLM P P PFP L T
Sbjct: 220 HGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQ-PTAELPFPQLYT 270
>ref|NP_777593.2| phytanoyl-CoA dioxygenase domain-containing protein 1 isoform b
[Homo sapiens].
Length = 297
Score = 273 bits (699), Expect(2) = e-123
Identities = 136/147 (92%), Positives = 140/147 (95%)
Frame = +1
Query: 73 MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ 252
MA LSPSQLQKFQ+DGFLVLEGFLSA ECVAMQQRIGE+VAEMDVP HCRTEFSTQEEEQ
Sbjct: 1 MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ 60
Query: 253 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS 432
LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEK+INKIGHALHAHDPVF+ ITHS
Sbjct: 61 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHS 120
Query: 433 PKVQALARSLGLQMPVVVQSMYIFKQP 513
KVQ LARSLGLQMPVVVQSMYIFK P
Sbjct: 121 FKVQTLARSLGLQMPVVVQSMYIFKSP 147
Score = 189 bits (480), Expect(2) = e-123
Identities = 95/144 (65%), Positives = 100/144 (69%)
Frame = +2
Query: 521 VAKSPLTRTPPSCTRSPWAGCWACGWHWRMPRWRTAASGSSPAPTQVGCREGWSGPLLAR 700
+ KSPL RTPPSCTRSPWAGCWACG WRMPRWRTA SGSS APT V C+EGWSGPLLA+
Sbjct: 143 IFKSPLIRTPPSCTRSPWAGCWACGSQWRMPRWRTAVSGSSLAPTPVVCQEGWSGPLLAQ 202
Query: 701 PRAPASLGLSQLGITTSLCPHQCGEGPSS*STEKWCTKASRTSPTALARPTRSTSWDAAD 880
PASLG SQ GIT SLCP QC EGP S S EKW T+ASRTS TA ARPT STSW
Sbjct: 203 RLVPASLGQSQPGITASLCPPQCREGPWSSSMEKWYTRASRTSLTARARPTLSTSWRPLA 262
Query: 881 TLGSPENWLPAHTPTPLSPRCKPK 952
G+ P P C PK
Sbjct: 263 PPGARRTGSSQQLNCPF-PNCTPK 285
>ref|NP_006205.1| phytanoyl-CoA dioxygenase, peroxisomal isoform a precursor [Homo
sapiens].
Length = 338
Score = 58.2 bits (139), Expect = 1e-08
Identities = 63/263 (23%), Positives = 103/263 (39%), Gaps = 3/263 (1%)
Frame = +1
Query: 82 LSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRA 261
L+ Q + ++E+GFLV++ LV + D+ R R EF ++++
Sbjct: 53 LTLEQRKFYEENGFLVIKN----------------LVPDADIQRF-RNEFEKICRKEVKP 95
Query: 262 QGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHSPKV 441
G T + V K + P EK I K+ +FR T P++
Sbjct: 96 LGLT-------------VMRDVTISKSEY-APSEKMITKV-QDFQEDKELFRYCT-LPEI 139
Query: 442 QALARSLGLQMPVVVQSMYIFKQPHFGGEVSPH---QDASFLYTEPLGRVLGMWMALEDA 612
+ + +M I K P G + S H QD + P ++ W A+E
Sbjct: 140 LKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHI 199
Query: 613 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 792
+ NGCL +PG+H G + G F G + +N V + +G V
Sbjct: 200 SRNNGCLVVLPGTHKGSLKPHDYPKWEGGV-NKMFHGIQDYEENKARVHLVMEKGDTVFF 258
Query: 793 HGEVVHKSEQNLSDRSRQAYTFH 861
H ++H S QN + R+A + H
Sbjct: 259 HPLLIHGSGQNKTQGFRKAISCH 281
>ref|NP_001032626.1| phytanoyl-CoA dioxygenase, peroxisomal isoform b precursor [Homo
sapiens].
Length = 238
Score = 55.5 bits (132), Expect = 8e-08
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 3/172 (1%)
Frame = +1
Query: 355 PPEKAINKIGHALHAHDPVFRCITHSPKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVS 534
P EK I K+ +FR T P++ + + +M I K P G + S
Sbjct: 13 PSEKMITKV-QDFQEDKELFRYCT-LPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTS 70
Query: 535 PH---QDASFLYTEPLGRVLGMWMALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAP 705
H QD + P ++ W A+E + NGCL +PG+H G + G
Sbjct: 71 RHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGV- 129
Query: 706 GTSFLGSEPARDNNLFVPTPVRRGALVLIHGEVVHKSEQNLSDRSRQAYTFH 861
F G + +N V + +G V H ++H S QN + R+A + H
Sbjct: 130 NKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCH 181
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,726,573
Number of extensions: 1802222
Number of successful extensions: 9133
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8996
Number of HSP's successfully gapped: 6
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003601
(1066 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_758471.1| phytanoyl-CoA dioxygenase domain-containing pro... 483 e-137
Alignment gi|NP_034856.1| phytanoyl-CoA dioxygenase, peroxisomal precurso... 50 2e-06
>ref|NP_758471.1| phytanoyl-CoA dioxygenase domain-containing protein 1 [Mus
musculus].
Length = 311
Score = 483 bits (1244), Expect = e-137
Identities = 242/302 (80%), Positives = 261/302 (86%), Gaps = 3/302 (0%)
Frame = +1
Query: 46 TRAAPC*VLMANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRT 225
++ +P MA LSPSQL+KFQEDGFL+LEGF +A ECVAMQQRIGE+VAEMDVP HCRT
Sbjct: 12 SQLSPAVFPMACLSPSQLKKFQEDGFLLLEGFFTADECVAMQQRIGEIVAEMDVPLHCRT 71
Query: 226 EFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHD 405
EFSTQE+EQL+ QG TDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEK+INKIGHALHAHD
Sbjct: 72 EFSTQEDEQLQTQGKTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHD 131
Query: 406 PVFRCITHSPKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVL 585
PVFR ITHSPKVQAL RSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDA+FLYTEPLGRVL
Sbjct: 132 PVFRSITHSPKVQALVRSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDATFLYTEPLGRVL 191
Query: 586 GMWMALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTP 765
G+W+A+EDA LENGCLWFIPGSHT GVSRRM+RAP+ S PGTSFLGS+PA +NLFVP P
Sbjct: 192 GLWIAMEDAMLENGCLWFIPGSHTRGVSRRMIRAPSDSGPGTSFLGSDPAWASNLFVPLP 251
Query: 766 VRRGALVLIHGEVVHKSEQNLSDRSRQAYTFHLM---GRR*HPGKPRKLAPGPHPNSPFP 936
VRRG LVLIHGEVVHKSEQN SD SRQAYT HLM G PG + P P PFP
Sbjct: 252 VRRGGLVLIHGEVVHKSEQNHSDHSRQAYTVHLMEAAGTVWSPGNWLQ----PTPELPFP 307
Query: 937 PL 942
PL
Sbjct: 308 PL 309
>ref|NP_034856.1| phytanoyl-CoA dioxygenase, peroxisomal precursor [Mus musculus].
Length = 338
Score = 50.4 bits (119), Expect = 2e-06
Identities = 60/267 (22%), Positives = 105/267 (39%), Gaps = 7/267 (2%)
Frame = +1
Query: 82 LSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRA 261
L+ Q + ++E+GFLV++ LV++ D+ R R EF E+++
Sbjct: 53 LTLEQRKFYEENGFLVIKN----------------LVSDDDIQRF-RAEFERICREEVKP 95
Query: 262 QGST---DYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFR-CITH 429
G D L+ D +P ++ ++KI + +FR C+
Sbjct: 96 PGIVIMRDVALAKQD-----------------YMPSDRMVSKI-QDFQEDEELFRYCLL- 136
Query: 430 SPKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPH---QDASFLYTEPLGRVLGMWMA 600
P++ + + M I K P G + S H QD + P ++ W A
Sbjct: 137 -PEILKYVECFTGPNIMALHGMLINKPPDVGKKTSRHPLHQDLHYFPFRPSNLIVCAWTA 195
Query: 601 LEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGA 780
+E NGCL +PG+H G + G + G + N+ V + +G
Sbjct: 196 MEHIDRNNGCLVVLPGTHKGTLKPHDYPKWEGGV-NKMYHGIQDYDPNSPRVHLVMEKGD 254
Query: 781 LVLIHGEVVHKSEQNLSDRSRQAYTFH 861
V H ++H S +N + R+A + H
Sbjct: 255 TVFFHPLLIHGSGRNKTQGFRKAISCH 281
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,243,741
Number of extensions: 1470471
Number of successful extensions: 7028
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6898
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003601
(1066 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928876.1| PREDICTED: phytanoyl-CoA dioxygenase domain-... 544 e-155
Alignment gi|XP_003122259.1| PREDICTED: phytanoyl-CoA dioxygenase domain-... 493 e-140
Alignment gi|NP_001106918.1| phytanoyl-CoA dioxygenase, peroxisomal [Sus ... 55 5e-08
>ref|XP_001928876.1| PREDICTED: phytanoyl-CoA dioxygenase domain-containing protein 1
isoform 1 [Sus scrofa].
Length = 291
Score = 544 bits (1402), Expect = e-155
Identities = 273/292 (93%), Positives = 273/292 (93%)
Frame = +1
Query: 73 MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ 252
MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ
Sbjct: 1 MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ 60
Query: 253 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS 432
LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS
Sbjct: 61 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS 120
Query: 433 PKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDA 612
PKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDA
Sbjct: 121 PKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDA 180
Query: 613 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 792
TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI
Sbjct: 181 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 240
Query: 793 HGEVVHKSEQNLSDRSRQAYTFHLMGRR*HPGKPRKLAPGPHPNSPFPPL*T 948
HGEVVHKSEQNLSDRSRQAYTFHLM P P PFPPL T
Sbjct: 241 HGEVVHKSEQNLSDRSRQAYTFHLMDAADTVWSPENWLQ-PTAELPFPPLYT 291
>ref|XP_003122259.1| PREDICTED: phytanoyl-CoA dioxygenase domain-containing protein 1
isoform 2 [Sus scrofa].
Length = 270
Score = 493 bits (1270), Expect = e-140
Identities = 252/292 (86%), Positives = 252/292 (86%)
Frame = +1
Query: 73 MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ 252
MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ
Sbjct: 1 MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQ 60
Query: 253 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS 432
LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS
Sbjct: 61 LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHS 120
Query: 433 PKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDA 612
PKVQ QPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDA
Sbjct: 121 PKVQ---------------------QPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDA 159
Query: 613 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 792
TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI
Sbjct: 160 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 219
Query: 793 HGEVVHKSEQNLSDRSRQAYTFHLMGRR*HPGKPRKLAPGPHPNSPFPPL*T 948
HGEVVHKSEQNLSDRSRQAYTFHLM P P PFPPL T
Sbjct: 220 HGEVVHKSEQNLSDRSRQAYTFHLMDAADTVWSPENWLQ-PTAELPFPPLYT 270
>ref|NP_001106918.1| phytanoyl-CoA dioxygenase, peroxisomal [Sus scrofa].
Length = 237
Score = 55.5 bits (132), Expect = 5e-08
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 3/173 (1%)
Frame = +1
Query: 352 VPPEKAINKIGHALHAHDPVFRCITHSPKVQALARSLGLQMPVVVQSMYIFKQPHFGGEV 531
VP EK ++K+ + +FR T P++ + + +M I K P G +
Sbjct: 12 VPCEKMVSKVQN-FQEDKELFRYCT-LPEILKYVECFTGPNIMAMHTMLINKPPDTGKKT 69
Query: 532 SPH---QDASFLYTEPLGRVLGMWMALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSA 702
S H QD + P ++ W A+E +NGCL PG+H G + G
Sbjct: 70 SRHPLHQDLHYFPFRPSNNIVCAWAAMEHIDRKNGCLVVFPGTHKGTLKPHDYPQWDGGV 129
Query: 703 PGTSFLGSEPARDNNLFVPTPVRRGALVLIHGEVVHKSEQNLSDRSRQAYTFH 861
F G + NN V + +G V H ++H S +N ++ R+A + H
Sbjct: 130 -NLMFHGIQDYDKNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKAISCH 181
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,712,639
Number of extensions: 1304378
Number of successful extensions: 6317
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6225
Number of HSP's successfully gapped: 3
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003601
(1066 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 321 4e-85
>Sscrofa_Chr01
|| Length = 315321322
Score = 321 bits (162), Expect = 4e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 104 agttccaggaggatggattcctggtgctggaaggattcttgtctgcagccgagtgtgtgg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303260804 agttccaggaggatggattcctggtgctggaaggattcttgtctgcagccgagtgtgtgg 303260863
Query: 164 ccatgcagcagaggattggcgagcttgtggccgagatggatgtccctcgccactgccgca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303260864 ccatgcagcagaggattggcgagcttgtggccgagatggatgtccctcgccactgccgca 303260923
Query: 224 cggaattttccacccaggaggaggagcagctgcgagcccagg 265
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303260924 cggaattttccacccaggaggaggagcagctgcgagcccagg 303260965
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 528 agtctcccctcaccaggacgcctccttcctgtacacggagcccctgggccgggtgctggg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303268276 agtctcccctcaccaggacgcctccttcctgtacacggagcccctgggccgggtgctggg 303268335
Query: 588 catgtggatggcactggaggatgccacgctggagaacggctgcctctggttcatccccgg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303268336 catgtggatggcactggaggatgccacgctggagaacggctgcctctggttcatccccgg 303268395
Query: 648 ctcccacacaggtg 661
||||||||||||||
Sbjct: 303268396 ctcccacacaggtg 303268409
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 656 caggtggggtgtcgagaaggatggtccgggcccctgctggctcggccccgggcaccagct 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303268490 caggtggggtgtcgagaaggatggtccgggcccctgctggctcggccccgggcaccagct 303268549
Query: 716 tccttgggtctgagccagctcgggataacaacctctttgtgcccacaccagtgcggagag 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303268550 tccttgggtctgagccagctcgggataacaacctctttgtgcccacaccagtgcggagag 303268609
Query: 776 g 776
|
Sbjct: 303268610 g 303268610
Score = 204 bits (103), Expect = 7e-50
Identities = 125/131 (95%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 774 aggggccctcgtcctgatccacggagaagtggtgcacaaaagcgagcagaacctctccga 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303270084 aggggccctcgtcctgatccacggagaagtggtgcacaaaagcgagcagaacctctccga 303270143
Query: 834 ccgctctcgccaggcctacacgttccacctcatgggacgccgctgacaccctgggaagcc 893
||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||
Sbjct: 303270144 ccgctctcgccaggcctacacgttccacctcat-ggacgccgctgacaccgtgtggagcc 303270202
Query: 894 ccgaaaactgg 904
| || ||||||
Sbjct: 303270203 cggagaactgg 303270213
Score = 165 bits (83), Expect = 6e-38
Identities = 92/95 (96%)
Strand = Plus / Plus
Query: 11 ccggccggccggccttgggctcagcaccctgagccacccgagcagcaccctgctaggttc 70
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 303258839 ccggccggccggccttgggctcagcaccctaagccacccgagcagcaccctgctagattc 303258898
Query: 71 tcatggcgaacctgagcccctcgcagctccagaag 105
||||||| |||||||||||||||||||||||||||
Sbjct: 303258899 tcatggccaacctgagcccctcgcagctccagaag 303258933
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 262 cagggcagcacagactacttcctgagcagcggtgacaagatccgattcttctttgagaag 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303263671 cagggcagcacagactacttcctgagcagcggtgacaagatccgattcttctttgagaag 303263730
Query: 322 ggtgtctttgatgagaaagg 341
||||||||||||||||||||
Sbjct: 303263731 ggtgtctttgatgagaaagg 303263750
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 440 tgcaggccttggccaggagtctgggcctccagatgcccgtggtggtgcagagcatgtata 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303265591 tgcaggccttggccaggagtctgggcctccagatgcccgtggtggtgcagagcatgtata 303265650
Query: 500 tctttaag 507
||||||||
Sbjct: 303265651 tctttaag 303265658
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 388 gctttgcacgcccatgaccctgtcttcaggtgcatcactcactcgcccaaggtgcagg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303265459 gctttgcacgcccatgaccctgtcttcaggtgcatcactcactcgcccaaggtgcagg 303265516
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 339 aggcaatttcctggtccctccggagaaagccatcaacaaaatcggccatg 388
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303263848 aggcaatttcctggtccctccggagaaagccatcaacaaaatcggccatg 303263897
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,270,862
Number of extensions: 151
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 9
Length of query: 1066
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1045
Effective length of database: 2,808,413,156
Effective search space: 2934791748020
Effective search space used: 2934791748020
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)