Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003604
(1088 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076079.1| extracellular superoxide dismutase [Bos taur... 363 e-100
Alignment gi|NP_777040.1| superoxide dismutase [Cu-Zn] [Bos taurus]. 100 3e-21
Alignment gi|XP_002692276.1| PREDICTED: superoxide dismutase-like [Bos ta... 97 2e-20
Alignment gi|XP_584414.4| PREDICTED: superoxide dismutase-like [Bos tauru... 97 2e-20
Alignment gi|NP_001039652.1| copper chaperone for superoxide dismutase [B... 53 4e-07
>ref|NP_001076079.1| extracellular superoxide dismutase [Bos taurus].
Length = 241
Score = 363 bits (933), Expect = e-100
Identities = 170/219 (77%), Positives = 185/219 (84%)
Frame = +1
Query: 202 ERPGSHMEEQIRDMQAKVTEIWQELTXXXXXXXXXXXXLHATCSMQPSVLLDAAQPQVTG 381
++ GS+ EEQIRDM AKVTEIWQE+ LHA C + PS L+A QP+V+G
Sbjct: 22 QQMGSNTEEQIRDMHAKVTEIWQEMMQRQAAAIDPDAALHAVCRVLPSATLEAEQPRVSG 81
Query: 382 LVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPHYNPLEVPHP 561
LVLFRQLRPGALLEAFFHL+GFP EPN T+RAIHVHQFGDLSQGCDSTGPHYNP+ VPHP
Sbjct: 82 LVLFRQLRPGALLEAFFHLEGFPNEPNGTNRAIHVHQFGDLSQGCDSTGPHYNPMSVPHP 141
Query: 562 QHPGDFGNFAVRDGQIWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGN 741
QHPGDFGNFAVRDGQ+W+YRS ASL GPHSIAGRAVVVHAGEDD+GRGGNQASLENGN
Sbjct: 142 QHPGDFGNFAVRDGQVWKYRSGLAASLTGPHSIAGRAVVVHAGEDDMGRGGNQASLENGN 201
Query: 742 AGRRLACCVVALCGPGPWAHQAQEHAEHRKRRRASECKA 858
AGRRLACCVV LCGPGPWA Q QEHAE +KRRR SECKA
Sbjct: 202 AGRRLACCVVGLCGPGPWARQTQEHAERKKRRRESECKA 240
>ref|NP_777040.1| superoxide dismutase [Cu-Zn] [Bos taurus].
Length = 152
Score = 100 bits (248), Expect = 3e-21
Identities = 54/106 (50%), Positives = 65/106 (61%), Gaps = 7/106 (6%)
Frame = +1
Query: 481 HVHQFGDLSQGCDSTGPHYNPLEVPH------PQHPGDFGNF-AVRDGQIWRYRSSPGAS 639
HVHQFGD +QGC S GPH+NPL H +H GD GN A ++G P S
Sbjct: 45 HVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLIS 104
Query: 640 LFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAGRRLACCVVAL 777
L G +SI GR +VVH DDLGRGGN+ S + GNAG RLAC V+ +
Sbjct: 105 LSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150
>ref|XP_002692276.1| PREDICTED: superoxide dismutase-like [Bos taurus].
Length = 191
Score = 97.1 bits (240), Expect = 2e-20
Identities = 53/106 (50%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
Frame = +1
Query: 481 HVHQFGDLSQGCDSTGPHYNPLEVPHP------QHPGDFGNF-AVRDGQIWRYRSSPGAS 639
HVHQFGD +QGC S GPH+NPL H +H GD GN A ++G S
Sbjct: 84 HVHQFGDNTQGCTSAGPHFNPLSKKHSGPKDEERHVGDLGNVTADKNGVAVVDIVDSLIS 143
Query: 640 LFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAGRRLACCVVAL 777
L G +SI GR +VVH DDLGRGGN+ S + GNAG RLAC V+ +
Sbjct: 144 LSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 189
>ref|XP_584414.4| PREDICTED: superoxide dismutase-like [Bos taurus].
Length = 191
Score = 97.1 bits (240), Expect = 2e-20
Identities = 53/106 (50%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
Frame = +1
Query: 481 HVHQFGDLSQGCDSTGPHYNPLEVPHP------QHPGDFGNF-AVRDGQIWRYRSSPGAS 639
HVHQFGD +QGC S GPH+NPL H +H GD GN A ++G S
Sbjct: 84 HVHQFGDNTQGCTSAGPHFNPLSKKHSGPKDEERHVGDLGNVTADKNGVAVVDIVDSLIS 143
Query: 640 LFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAGRRLACCVVAL 777
L G +SI GR +VVH DDLGRGGN+ S + GNAG RLAC V+ +
Sbjct: 144 LSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 189
>ref|NP_001039652.1| copper chaperone for superoxide dismutase [Bos taurus].
Length = 216
Score = 53.1 bits (126), Expect = 4e-07
Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Frame = +1
Query: 373 VTGLVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPHYNPLEV 552
V G+V F QL P L ++G +HVHQFGDL++ C+S G H+NP +
Sbjct: 99 VQGVVRFLQLTPERCL-----IEGTIDGLQPGLHGLHVHQFGDLTRNCNSCGDHFNPDGM 153
Query: 553 PH--PQ----HPGDFGN----------FAVRDGQI---WRYRSSP 630
H PQ H GD GN F + D Q+ WR R P
Sbjct: 154 SHGGPQDSERHRGDLGNVRADEDGRAVFRIEDEQLKVRWRRRQGP 198
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,975,146
Number of extensions: 1144824
Number of successful extensions: 10199
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9475
Number of HSP's successfully gapped: 5
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003604
(1088 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545973.2| PREDICTED: similar to Extracellular superoxide ... 301 9e-82
Alignment gi|NP_001003035.1| superoxide dismutase [Cu-Zn] [Canis lupus fa... 94 3e-19
Alignment gi|NP_001181899.1| copper chaperone for superoxide dismutase [C... 80 3e-15
>ref|XP_545973.2| PREDICTED: similar to Extracellular superoxide dismutase [Cu-Zn]
precursor (EC-SOD) [Canis familiaris].
Length = 257
Score = 301 bits (770), Expect = 9e-82
Identities = 144/218 (66%), Positives = 167/218 (76%)
Frame = +1
Query: 208 PGSHMEEQIRDMQAKVTEIWQELTXXXXXXXXXXXXLHATCSMQPSVLLDAAQPQVTGLV 387
PG+ + Q+ DM KVT IWQ+LT LHA C +QPS LD AQP+V+GLV
Sbjct: 41 PGA-VAAQLSDMHDKVTAIWQQLTQRAAEPGAPGSALHAACRVQPSASLDPAQPRVSGLV 99
Query: 388 LFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPHYNPLEVPHPQH 567
LFRQ PGA LEAFFHL GFPAE N + RAIHVH+FGDLS GC++ GPHYNP PHP H
Sbjct: 100 LFRQPAPGAPLEAFFHLDGFPAERNGSRRAIHVHRFGDLSPGCEAAGPHYNPRAAPHPHH 159
Query: 568 PGDFGNFAVRDGQIWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAG 747
PGDFGNFAVRDG++ ++R ASL GPHSI GRAVVVHAGEDDLGRGG+ ASL++GNAG
Sbjct: 160 PGDFGNFAVRDGRVRKHRGGLAASLAGPHSIVGRAVVVHAGEDDLGRGGDPASLDHGNAG 219
Query: 748 RRLACCVVALCGPGPWAHQAQEHAEHRKRRRASECKAS 861
RRLACCVV +CGP PWA A+EHAE RKRRR S+C+A+
Sbjct: 220 RRLACCVVGVCGPLPWARAAREHAERRKRRRDSDCQAA 257
>ref|NP_001003035.1| superoxide dismutase [Cu-Zn] [Canis lupus familiaris].
Length = 153
Score = 93.6 bits (231), Expect = 3e-19
Identities = 50/106 (47%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Frame = +1
Query: 481 HVHQFGDLSQGCDSTGPHYNPLEVPH------PQHPGDFGNF-AVRDGQIWRYRSSPGAS 639
HVHQF D +QGC S GPH+NPL H +H GD GN A +DG +
Sbjct: 46 HVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIA 105
Query: 640 LFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAGRRLACCVVAL 777
L G +SI GR +VVH DDLG+G N+ S + GNAG RLAC V+ +
Sbjct: 106 LSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151
>ref|NP_001181899.1| copper chaperone for superoxide dismutase [Canis lupus familiaris].
Length = 274
Score = 80.1 bits (196), Expect = 3e-15
Identities = 54/142 (38%), Positives = 72/142 (50%), Gaps = 8/142 (5%)
Frame = +1
Query: 373 VTGLVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPHYNPLEV 552
V G+V F QL P L ++G +HVHQFGDL+ C+S G H+NP
Sbjct: 99 VQGVVRFLQLTPERCL-----IEGTIDGLEPGLHGLHVHQFGDLTGNCNSCGDHFNPDGA 153
Query: 553 PH------PQHPGDFGNF-AVRDGQ-IWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGR 708
H +H GD GN A DG+ I+R + GR++V+ GEDDLG
Sbjct: 154 SHGGPKDSDRHRGDLGNVHAGTDGRAIFRIEDEQ----LKVWDVIGRSLVIDEGEDDLGL 209
Query: 709 GGNQASLENGNAGRRLACCVVA 774
GG+ S GN+G RLAC ++A
Sbjct: 210 GGHPLSKVTGNSGERLACGIIA 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,478,815
Number of extensions: 1174780
Number of successful extensions: 9892
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9395
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003604
(1088 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003093.2| extracellular superoxide dismutase [Cu-Zn] prec... 342 4e-94
Alignment gi|NP_000445.1| superoxide dismutase [Cu-Zn] [Homo sapiens]. 99 7e-21
Alignment gi|NP_005116.1| copper chaperone for superoxide dismutase [Homo... 82 1e-15
>ref|NP_003093.2| extracellular superoxide dismutase [Cu-Zn] precursor [Homo
sapiens].
Length = 240
Score = 342 bits (877), Expect = 4e-94
Identities = 166/229 (72%), Positives = 182/229 (79%)
Frame = +1
Query: 175 SDALTHVDVERPGSHMEEQIRDMQAKVTEIWQELTXXXXXXXXXXXXLHATCSMQPSVLL 354
SDA T D P S E IRDM AKVTEIWQE+ LHA C +QPS L
Sbjct: 16 SDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGA----LHAACQVQPSATL 71
Query: 355 DAAQPQVTGLVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPH 534
DAAQP+VTG+VLFRQL P A L+AFF L+GFP EPNS+SRAIHVHQFGDLSQGC+STGPH
Sbjct: 72 DAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPH 131
Query: 535 YNPLEVPHPQHPGDFGNFAVRDGQIWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGRGG 714
YNPL VPHPQHPGDFGNFAVRDG +WRYR+ ASL GPHSI GRAVVVHAGEDDLGRGG
Sbjct: 132 YNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGG 191
Query: 715 NQASLENGNAGRRLACCVVALCGPGPWAHQAQEHAEHRKRRRASECKAS 861
NQAS+ENGNAGRRLACCVV +CGPG W QA+EH+E +KRRR SECKA+
Sbjct: 192 NQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA 240
>ref|NP_000445.1| superoxide dismutase [Cu-Zn] [Homo sapiens].
Length = 154
Score = 99.0 bits (245), Expect = 7e-21
Identities = 57/142 (40%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Frame = +1
Query: 373 VTGLVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPHYNPLEV 552
V G++ F Q ++ + +KG HVH+FGD + GC S GPH+NPL
Sbjct: 15 VQGIINFEQKESNGPVKVWGSIKGL----TEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR 70
Query: 553 PH------PQHPGDFGNF-AVRDGQIWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGRG 711
H +H GD GN A +DG SL G H I GR +VVH DDLG+G
Sbjct: 71 KHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKG 130
Query: 712 GNQASLENGNAGRRLACCVVAL 777
GN+ S + GNAG RLAC V+ +
Sbjct: 131 GNEESTKTGNAGSRLACGVIGI 152
>ref|NP_005116.1| copper chaperone for superoxide dismutase [Homo sapiens].
Length = 274
Score = 81.6 bits (200), Expect = 1e-15
Identities = 55/142 (38%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Frame = +1
Query: 373 VTGLVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPHYNPLEV 552
V G+V F QL P L ++G +HVHQ+GDL+ C+S G H+NP
Sbjct: 99 VQGVVRFLQLTPERCL-----IEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGA 153
Query: 553 PH--PQ----HPGDFGNF-AVRDGQ-IWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGR 708
H PQ H GD GN A DG+ I+R + GR++++ GEDDLGR
Sbjct: 154 SHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQ----LKVWDVIGRSLIIDEGEDDLGR 209
Query: 709 GGNQASLENGNAGRRLACCVVA 774
GG+ S GN+G RLAC ++A
Sbjct: 210 GGHPLSKITGNSGERLACGIIA 231
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,566,524
Number of extensions: 1143423
Number of successful extensions: 10012
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9388
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003604
(1088 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035565.1| extracellular superoxide dismutase [Cu-Zn] prec... 285 4e-77
Alignment gi|NP_035564.1| superoxide dismutase [Cu-Zn] [Mus musculus]. 98 1e-20
Alignment gi|NP_058588.1| copper chaperone for superoxide dismutase [Mus ... 81 1e-15
>ref|NP_035565.1| extracellular superoxide dismutase [Cu-Zn] precursor [Mus
musculus].
Length = 251
Score = 285 bits (729), Expect = 4e-77
Identities = 138/212 (65%), Positives = 160/212 (75%)
Frame = +1
Query: 226 EQIRDMQAKVTEIWQELTXXXXXXXXXXXXLHATCSMQPSVLLDAAQPQVTGLVLFRQLR 405
E+I D AKV EIW EL +HA C +QPS L QPQ+TGLVLFRQL
Sbjct: 46 EKIGDTHAKVLEIWMEL---GRRREVDAAEMHAICRVQPSATLPPDQPQITGLVLFRQLG 102
Query: 406 PGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPHYNPLEVPHPQHPGDFGN 585
PG+ LEA+F L+GFPAE N+++RAIHVH+FGDLSQGCDSTGPHYNP+EVPHPQHPGDFGN
Sbjct: 103 PGSRLEAYFSLEGFPAEQNASNRAIHVHEFGDLSQGCDSTGPHYNPMEVPHPQHPGDFGN 162
Query: 586 FAVRDGQIWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAGRRLACC 765
F VR+GQ+WR+R ASL GPH+I GR+VVVHAGEDDLG+GGNQASL+NGNAGRRLACC
Sbjct: 163 FVVRNGQLWRHRVGLTASLAGPHAILGRSVVVHAGEDDLGKGGNQASLQNGNAGRRLACC 222
Query: 766 VVALCGPGPWAHQAQEHAEHRKRRRASECKAS 861
VV W Q + E +KRRR SECK +
Sbjct: 223 VVGTSSSAAWESQTK---ERKKRRRESECKTT 251
>ref|NP_035564.1| superoxide dismutase [Cu-Zn] [Mus musculus].
Length = 154
Score = 98.2 bits (243), Expect = 1e-20
Identities = 52/106 (49%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
Frame = +1
Query: 481 HVHQFGDLSQGCDSTGPHYNPLEVPH------PQHPGDFGNF-AVRDGQIWRYRSSPGAS 639
HVHQ+GD +QGC S GPH+NP H +H GD GN A +DG S
Sbjct: 47 HVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVIS 106
Query: 640 LFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAGRRLACCVVAL 777
L G HSI GR +VVH +DDLG+GGN+ S + GNAG RLAC V+ +
Sbjct: 107 LSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152
>ref|NP_058588.1| copper chaperone for superoxide dismutase [Mus musculus].
Length = 274
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Frame = +1
Query: 478 IHVHQFGDLSQGCDSTGPHYNPLEVPH--PQ----HPGDFGNFAVRDGQIWRYRSSPGAS 639
+HVHQ+GDL++ C+S G H+NP H PQ H GD GN G +R
Sbjct: 129 LHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIED--K 186
Query: 640 LFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAGRRLACCVVA 774
+ GR++V+ GEDDLGRGG+ S GN+G+RLAC ++A
Sbjct: 187 QLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGIIA 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,277,298
Number of extensions: 932641
Number of successful extensions: 7410
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6920
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003604
(1088 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001072156.1| extracellular superoxide dismutase [Sus scro... 450 e-127
Alignment gi|NP_001177351.1| superoxide dismutase [Cu-Zn] [Sus scrofa]. 102 3e-22
Alignment gi|NP_001001866.1| copper chaperone for superoxide dismutase [S... 87 2e-17
>ref|NP_001072156.1| extracellular superoxide dismutase [Sus scrofa].
Length = 244
Score = 450 bits (1157), Expect = e-127
Identities = 216/229 (94%), Positives = 216/229 (94%)
Frame = +1
Query: 175 SDALTHVDVERPGSHMEEQIRDMQAKVTEIWQELTXXXXXXXXXXXXLHATCSMQPSVLL 354
SDALTHVDVERPGSHMEEQIRDMQAKVTEIWQELT LHATCSMQPSVLL
Sbjct: 16 SDALTHVDVERPGSHMEEQIRDMQAKVTEIWQELTQQRAAGGGQEAALHATCSMQPSVLL 75
Query: 355 DAAQPQVTGLVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPH 534
DAAQPQVTGLVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPH
Sbjct: 76 DAAQPQVTGLVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQGCDSTGPH 135
Query: 535 YNPLEVPHPQHPGDFGNFAVRDGQIWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGRGG 714
YNPLEVPHPQHPGDFGNFAVRDGQIWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGRGG
Sbjct: 136 YNPLEVPHPQHPGDFGNFAVRDGQIWRYRSSPGASLFGPHSIAGRAVVVHAGEDDLGRGG 195
Query: 715 NQASLENGNAGRRLACCVVALCGPGPWAHQAQEHAEHRKRRRASECKAS 861
NQASLENGNAGRRLACCVVALCGPGPWAHQAQEHAEHRKRRRASECK S
Sbjct: 196 NQASLENGNAGRRLACCVVALCGPGPWAHQAQEHAEHRKRRRASECKGS 244
>ref|NP_001177351.1| superoxide dismutase [Cu-Zn] [Sus scrofa].
Length = 153
Score = 102 bits (255), Expect = 3e-22
Identities = 54/106 (50%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
Frame = +1
Query: 481 HVHQFGDLSQGCDSTGPHYNPLEVPH------PQHPGDFGNF-AVRDGQIWRYRSSPGAS 639
HVHQFGD +QGC S GPH+NP H +H GD GN A +DG Y +
Sbjct: 46 HVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIA 105
Query: 640 LFGPHSIAGRAVVVHAGEDDLGRGGNQASLENGNAGRRLACCVVAL 777
L G HSI GR +VVH DDLGRGGN+ S + GNAG RLAC V+ +
Sbjct: 106 LSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151
>ref|NP_001001866.1| copper chaperone for superoxide dismutase [Sus scrofa].
Length = 274
Score = 87.0 bits (214), Expect = 2e-17
Identities = 58/156 (37%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Frame = +1
Query: 331 SMQPSVLLDAAQPQVTGLVLFRQLRPGALLEAFFHLKGFPAEPNSTSRAIHVHQFGDLSQ 510
+++ +V + V G+V F QL P L ++G +HVHQFGDL++
Sbjct: 85 NLEAAVAILGGSGPVQGVVRFLQLTPERCL-----IEGTIDGLKPGLHGLHVHQFGDLTR 139
Query: 511 GCDSTGPHYNPLEVPH--PQ----HPGDFGNF-AVRDGQ-IWRYRSSPGASLFGPHSIAG 666
C+S G H+NP + H PQ H GD GN A DG+ ++R L + G
Sbjct: 140 NCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDE----LLKVWDVIG 195
Query: 667 RAVVVHAGEDDLGRGGNQASLENGNAGRRLACCVVA 774
R++V+ GEDDLGRGG+ S GN+G RLAC ++A
Sbjct: 196 RSLVIDEGEDDLGRGGHPLSKITGNSGERLACGIIA 231
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,591,532
Number of extensions: 744548
Number of successful extensions: 6945
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6484
Number of HSP's successfully gapped: 3
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003604
(1088 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1439 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 1439 bits (726), Expect = 0.0
Identities = 783/798 (98%), Gaps = 3/798 (0%)
Strand = Plus / Plus
Query: 112 aggtgcccgactcctgccatgctgacgctgctctgtgcttacctgctcctggcgcccggc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19293221 aggtgcccgactcctgccatgctgacgctgctctgtgcttacctgctcctggcgcccggc 19293280
Query: 172 gcctccgacgccttgacccacgtggacgtggagcggccaggctcccacatggaggagcag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19293281 gcctccgacgccttgacccacgtggacgtggagcggccaggctcccacatggaggagcag 19293340
Query: 232 atccgggacatgcaggccaaagtgacggagatctggcaggagttgacgcagcagcgggcg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19293341 atccgggacatgcaggccaaagtgacggagatctggcaggagttgacgcagcagcgggcg 19293400
Query: 292 gcgggcggcggccaggaggccgcgctccacgccacctgctcgatgcagccttcggtcttg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19293401 gcgggcggcggccaggaggccgcgctccacgccacctgctcgatgcagccttcggtcttg 19293460
Query: 352 ctggacgcggcgcagccccaggtgaccggccttgtgctcttccggcagctccggcccggc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19293461 ctggacgcggcgcagccccaggtgaccggccttgtgctcttccggcagctccggcccggc 19293520
Query: 412 gccctgctcgaggccttcttccacctgaagggcttcccggccgagcccaacagcaccagc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19293521 gccctgctcgaggccttcttccacctgaagggcttcccggccgagcccaacagcaccagc 19293580
Query: 472 cgcgccatccacgtgcaccagttcggggacctgagccagggctgcgactccacagggccg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19293581 cgcgccatccacgtgcaccagttcggggacctgagccagggctgcgactccacagggccg 19293640
Query: 532 cactacaacccgctggaggtgccacatccgcagcacccgggagacttcggcaacttcgcc 591
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19293641 cactacaacccgctggatgtgccacatccgcagcacccgggagacttcggcaacttcgcc 19293700
Query: 592 gtgcgcgacggccagatctggaggtaccgctccagcccgggcgcctcgctcttcggcccg 651
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 19293701 gtgcgtgacggccagatctggaggtaccgctccagtccgggcgcctcgctgttcggcccg 19293760
Query: 652 cactcgatcgcgggccgcgcggtggtggtccacgcgggcgaggacgacctgggccgcggc 711
||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||||
Sbjct: 19293761 cactcgatcgcggaccgcgcggtggttgtccacgtgggcgaggacgacatgggccgcgg- 19293819
Query: 712 ggcaaccaggccagcctggagaacggcaacgccggccgccgcctggcctgctgcgtggtg 771
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 19293820 ggcaaccaggccagcctggagaacggcaacgccggccgccgcctggcatgctgcgtggtg 19293879
Query: 772 gccctgtgcggccccgggccctgggcgcaccaggcgcaggagcacgccgagcacaggaag 831
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 19293880 gccctgtgcggccccgggccctgggcgccccaggcgcaggagcacgccgatcacatgaag 19293939
Query: 832 cggcggcgcgcaagcgagtgcaaggccagctga-gcgccccgccctggcggcccgagaga 890
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 19293940 cggcggcgcgcaagcgagtgcaaggccagctgatgcgccccg-cctggcggcccgagaga 19293998
Query: 891 gctccctccacgcccgga 908
||||||||||||||||||
Sbjct: 19293999 gctccctccacgcccgga 19294016
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 7 aacagcccaggcttctgccagccaccttcctgtagcgacgacgacggccaggcgggtgct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19289287 aacagcccaggcttctgccagccaccttcctgtagcgacgacgacggccaggcgggtgct 19289346
Query: 67 gctccccatttcccgggagggaaggctctcttggaagagctggaaaggtg 116
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19289347 gctccccatttcccgggagggaaggctctcttggaagagctggaaaggtg 19289396
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,242,961
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 2
Length of query: 1088
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1067
Effective length of database: 2,808,413,156
Effective search space: 2996576837452
Effective search space used: 2996576837452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)