Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003608
(1019 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068791.1| pre-mRNA-splicing factor 18 [Bos taurus]. 572 e-163
>ref|NP_001068791.1| pre-mRNA-splicing factor 18 [Bos taurus].
Length = 342
Score = 572 bits (1474), Expect = e-163
Identities = 290/296 (97%), Positives = 292/296 (98%)
Frame = +2
Query: 128 MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT 307
MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPK+EDQKPLT
Sbjct: 1 MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKDEDQKPLT 60
Query: 308 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN 487
SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN
Sbjct: 61 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN 120
Query: 488 KGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 667
KGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD
Sbjct: 121 KGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 180
Query: 668 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 847
DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR
Sbjct: 181 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 240
Query: 848 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAELVGER 1015
NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHA E+
Sbjct: 241 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREK 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,639,255
Number of extensions: 945913
Number of successful extensions: 3338
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3329
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003608
(1019 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535182.2| PREDICTED: similar to Pre-mRNA splicing factor ... 573 e-164
Alignment gi|XP_857262.1| PREDICTED: similar to Pre-mRNA splicing factor ... 565 e-161
Alignment gi|XP_857224.1| PREDICTED: similar to Pre-mRNA splicing factor ... 362 e-100
>ref|XP_535182.2| PREDICTED: similar to Pre-mRNA splicing factor 18 (PRP18 homolog)
(hPRP18) isoform 1 [Canis familiaris].
Length = 342
Score = 573 bits (1477), Expect = e-164
Identities = 291/296 (98%), Positives = 292/296 (98%)
Frame = +2
Query: 128 MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT 307
MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT
Sbjct: 1 MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT 60
Query: 308 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN 487
SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN
Sbjct: 61 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN 120
Query: 488 KGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 667
KGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD
Sbjct: 121 KGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 180
Query: 668 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 847
DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR
Sbjct: 181 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 240
Query: 848 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAELVGER 1015
NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHA E+
Sbjct: 241 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREK 296
>ref|XP_857262.1| PREDICTED: similar to Pre-mRNA splicing factor 18 (PRP18 homolog)
(hPRP18) isoform 3 [Canis familiaris].
Length = 351
Score = 565 bits (1457), Expect = e-161
Identities = 291/305 (95%), Positives = 292/305 (95%), Gaps = 9/305 (2%)
Frame = +2
Query: 128 MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYK---------IQP 280
MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYK IQP
Sbjct: 1 MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKPINEKPSGEIQP 60
Query: 281 KEEDQKPLTSSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRK 460
KEEDQKPLTSSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRK
Sbjct: 61 KEEDQKPLTSSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRK 120
Query: 461 IEILTPEVNKGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEA 640
IEILTPEVNKGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEA
Sbjct: 121 IEILTPEVNKGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEA 180
Query: 641 LGESLGKGDDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 820
LGESLGKGDDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR
Sbjct: 181 LGESLGKGDDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 240
Query: 821 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAE 1000
PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHA
Sbjct: 241 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 300
Query: 1001 LVGER 1015
E+
Sbjct: 301 TGREK 305
>ref|XP_857224.1| PREDICTED: similar to Pre-mRNA splicing factor 18 (PRP18 homolog)
(hPRP18) isoform 2 [Canis familiaris].
Length = 278
Score = 362 bits (930), Expect = e-100
Identities = 205/296 (69%), Positives = 212/296 (71%)
Frame = +2
Query: 128 MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT 307
MDVLKSEILRKRQLVEDRNLLVENKK YF+R ++ KEE+
Sbjct: 1 MDVLKSEILRKRQLVEDRNLLVENKK--------------YFKRS--ELAKKEEEAY--- 41
Query: 308 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN 487
F+R I
Sbjct: 42 ---------------------------------------------FERCGYKPINEKPSG 56
Query: 488 KGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 667
+GLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD
Sbjct: 57 EGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 116
Query: 668 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 847
DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR
Sbjct: 117 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 176
Query: 848 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAELVGER 1015
NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHA E+
Sbjct: 177 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREK 232
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,504,866
Number of extensions: 988700
Number of successful extensions: 3361
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3334
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003608
(1019 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003666.1| pre-mRNA-splicing factor 18 [Homo sapiens]. 572 e-163
>ref|NP_003666.1| pre-mRNA-splicing factor 18 [Homo sapiens].
Length = 342
Score = 572 bits (1474), Expect = e-163
Identities = 289/296 (97%), Positives = 292/296 (98%)
Frame = +2
Query: 128 MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT 307
MD+LKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT
Sbjct: 1 MDILKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT 60
Query: 308 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN 487
SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN
Sbjct: 61 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN 120
Query: 488 KGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 667
KGLRNDLKAALDKIDQQYLNE+VGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD
Sbjct: 121 KGLRNDLKAALDKIDQQYLNEIVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 180
Query: 668 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 847
DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR
Sbjct: 181 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 240
Query: 848 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAELVGER 1015
NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHA E+
Sbjct: 241 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREK 296
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,752,755
Number of extensions: 971049
Number of successful extensions: 3254
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3246
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003608
(1019 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080321.2| pre-mRNA-splicing factor 18 [Mus musculus]. 568 e-162
>ref|NP_080321.2| pre-mRNA-splicing factor 18 [Mus musculus].
Length = 342
Score = 568 bits (1465), Expect = e-162
Identities = 286/296 (96%), Positives = 292/296 (98%)
Frame = +2
Query: 128 MDVLKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLT 307
MD+LKSEILRKRQLVEDRNLLVENKKYFKRSELA+KEEEAY+ERCGYKIQPKE+DQKPLT
Sbjct: 1 MDILKSEILRKRQLVEDRNLLVENKKYFKRSELARKEEEAYYERCGYKIQPKEDDQKPLT 60
Query: 308 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN 487
SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN
Sbjct: 61 SSNPVLELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVN 120
Query: 488 KGLRNDLKAALDKIDQQYLNELVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 667
KGLRNDLKAALDKIDQQYLNE+VGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD
Sbjct: 121 KGLRNDLKAALDKIDQQYLNEIVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGD 180
Query: 668 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 847
DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR
Sbjct: 181 DHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKR 240
Query: 848 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAELVGER 1015
NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHA E+
Sbjct: 241 NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREK 296
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,139,815
Number of extensions: 823774
Number of successful extensions: 2859
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2850
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003608
(1019 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130797.2| PREDICTED: FERM domain-containing protein 4A... 415 e-116
>ref|XP_003130797.2| PREDICTED: FERM domain-containing protein 4A-like [Sus scrofa].
Length = 621
Score = 415 bits (1066), Expect = e-116
Identities = 209/214 (97%), Positives = 210/214 (98%)
Frame = +2
Query: 374 EVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQYLNEL 553
EVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQYLNEL
Sbjct: 362 EVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQYLNEL 421
Query: 554 VGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFLLGVWAKE 733
VGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFLLGVWAKE
Sbjct: 422 VGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFLLGVWAKE 481
Query: 734 LNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREY 913
LNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREY
Sbjct: 482 LNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQREY 541
Query: 914 VKANDAYLQMAIGNAPWPIGVTMVGIHAELVGER 1015
VKANDAYLQMAIGNAPWPIGVTMVGIHA E+
Sbjct: 542 VKANDAYLQMAIGNAPWPIGVTMVGIHARTGREK 575
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,548,133
Number of extensions: 605253
Number of successful extensions: 2164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2157
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003608
(1019 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 385 e-104
>Sscrofa_Chr10
|| Length = 79102373
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 1 atgtaagttgttgtcgttcggtgtttgggttcacttcatgtagtaggtgcgcggcggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52821496 atgtaagttgttgtcgttcggtgtttgggttcacttcatgtagtaggtgcgcggcggctg 52821437
Query: 61 gctgggtggaaaggtttggtccgaggagccgcagaggggcgactcgagcttaaagccggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52821436 gctgggtggaaaggtttggtccgaggagccgcagaggggcgactcgagcttaaagccggg 52821377
Query: 121 cagaaaaatggacgttcttaagtccgagatcctccggaagcggcagttggtggaagacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52821376 cagaaaaatggacgttcttaagtccgagatcctccggaagcggcagttggtggaagacag 52821317
Query: 181 gaacctgttggtgg 194
||||||||||||||
Sbjct: 52821316 gaacctgttggtgg 52821303
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 489 aggggttgaggaatgatctgaaagcagctttggataagatcgatcagcagtatctcaatg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52858479 aggggttgaggaatgatctgaaagcagctttggataagatcgatcagcagtatctcaatg 52858538
Query: 549 aacttgtgggtggccaagaacctggggaggaagacacccagaatgatttgaaagttcatg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52858539 aacttgtgggtggccaagaacctggggaggaagacacccagaatgatttgaaagttcatg 52858598
Query: 609 aagaaaacaccacaattgaggagttagagg 638
||||||||||||||||||||||||||||||
Sbjct: 52858599 aagaaaacaccacaattgaggagttagagg 52858628
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 705 agtttcttcttggtgtttgggctaaggagttgaatgccagagaagattatgtaaaaagga 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52861854 agtttcttcttggtgtttgggctaaggagttgaatgccagagaagattatgtaaaaagga 52861913
Query: 765 gtgtgcagggtaaactgaacagtgctactcaaaaacagactgagtcctatctcagacccc 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52861914 gtgtgcagggtaaactgaacagtgctactcaaaaacagactgagtcctatctcagacccc 52861973
Query: 825 ttttcagaaagctccggaagagg 847
|||||||||||||||||||||||
Sbjct: 52861974 ttttcagaaagctccggaagagg 52861996
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 375 aggttatcagaagattgagagaaagaggagaaccaatcagactatttggagaaactgatt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52848770 aggttatcagaagattgagagaaagaggagaaccaatcagactatttggagaaactgatt 52848829
Query: 435 atgatgcttttcaacgtttaagaaagatagagatcctcacaccggaagttaacaagg 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52848830 atgatgcttttcaacgtttaagaaagatagagatcctcacaccggaagttaacaagg 52848886
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 270 agatacagccaaaagaggaggaccagaaaccattaacttcatcaaatccagtattagaac 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52805799 agatacagccaaaagaggaggaccagaaaccattaacttcatcaaatccagtattagaac 52805740
Query: 330 ttgaactggcagaggaaaaattacccatgactctttctcggcaagaggt 378
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52805739 ttgaactggcagaggaaaaattacccatgactctttctcggcaagaggt 52805691
Score = 180 bits (91), Expect = 1e-42
Identities = 101/103 (98%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 918 aggctaatgatgcttaccttcagatggccattggaaatgccccttggcccattggtgtca 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52864891 aggctaatgatgcttaccttcagatggccattggaaatgccccttggcccattggtgtca 52864950
Query: 978 ctatggttggtatccacg-cagaactggtaggggaaagatttt 1019
|||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 52864951 ctatggttggtatccacgccagaactggtagggaaaagatttt 52864993
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 847 gaatcttcctgctgatattaaagaatccataacagatattattaaattcatgttgcagag 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52862126 gaatcttcctgctgatattaaagaatccataacagatattattaaattcatgttgcagag 52862185
Query: 907 ggaatatgtgaagg 920
||||||||||||||
Sbjct: 52862186 ggaatatgtgaagg 52862199
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 636 aggccctgggagagtctttaggaaaaggtgatgatcataaagacatggacatcattacca 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52860109 aggccctgggagagtctttaggaaaaggtgatgatcataaagacatggacatcattacca 52860168
Query: 696 aattccttaag 706
|||||||||||
Sbjct: 52860169 aattccttaag 52860179
Score = 115 bits (58), Expect = 5e-23
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 193 ggaaaataaaaaatacttcaagcgtagtgaacttgcnnnnnnngaagaggaagcatattt 252
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 52809296 ggaaaataaaaaatacttcaagcgtagtgaacttgcaaaaaaagaagaggaagcatattt 52809237
Query: 253 tgaaagatgtggctacaag 271
|||||||||||||||||||
Sbjct: 52809236 tgaaagatgtggctacaag 52809218
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,644,530
Number of extensions: 237
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 9
Length of query: 1019
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 998
Effective length of database: 2,808,413,156
Effective search space: 2802796329688
Effective search space used: 2802796329688
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)