Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003611
(940 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033168.1| ADP-ribosylation factor-like protein 2 [Bos ... 368 e-102
Alignment gi|NP_001033656.1| ADP-ribosylation factor-like protein 3 [Bos ... 205 4e-53
Alignment gi|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus]. 172 5e-43
Alignment gi|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus]. 171 1e-42
Alignment gi|NP_777114.1| ADP-ribosylation factor 2 [Bos taurus]. 169 2e-42
Alignment gi|NP_001029702.1| ADP-ribosylation factor 4 [Bos taurus]. 169 3e-42
Alignment gi|XP_002686040.1| PREDICTED: ADP-ribosylation factor 1-like [B... 167 9e-42
Alignment gi|XP_001253266.1| PREDICTED: ADP-ribosylation factor 1 isoform... 167 9e-42
Alignment gi|NP_001077140.1| ADP-ribosylation factor 5 [Bos taurus]. 167 2e-41
Alignment gi|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus]. 159 3e-39
>ref|NP_001033168.1| ADP-ribosylation factor-like protein 2 [Bos taurus].
Length = 184
Score = 368 bits (944), Expect = e-102
Identities = 182/184 (98%), Positives = 183/184 (99%)
Frame = +3
Query: 36 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 215
MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 216 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 395
KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ+LLVEERLAGATL
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATL 120
Query: 396 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 575
LIFANKQDLPGALSS AIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
Sbjct: 121 LIFANKQDLPGALSSNAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 180
Query: 576 FMAD 587
FMAD
Sbjct: 181 FMAD 184
>ref|NP_001033656.1| ADP-ribosylation factor-like protein 3 [Bos taurus].
Length = 182
Score = 205 bits (522), Expect = 4e-53
Identities = 98/180 (54%), Positives = 138/180 (76%), Gaps = 1/180 (0%)
Frame = +3
Query: 36 MGLLTILKKMKQK-ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRG 212
MGLL+IL+K+K ++E+R+L+LGLDNAGKTT+LK+ EDI I+PT GFNIK+++ +G
Sbjct: 1 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG 60
Query: 213 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 392
FKLN+WD+GGQ+ +R YWRNYFE+TD LI+V+DSADR+R ++ +EL LL EE+L+
Sbjct: 61 FKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVP 120
Query: 393 LLIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+LIFANKQDL A + I E L L +IR W IQ CSA+TGE + G++W+ ++S++
Sbjct: 121 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRFWQIQSCSALTGEGVQDGMNWVCKNVSAK 180
>ref|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus].
Length = 181
Score = 172 bits (435), Expect = 5e-43
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus].
Length = 181
Score = 171 bits (432), Expect = 1e-42
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|NP_777114.1| ADP-ribosylation factor 2 [Bos taurus].
Length = 181
Score = 169 bits (429), Expect = 2e-42
Identities = 77/166 (46%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+F NKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>ref|NP_001029702.1| ADP-ribosylation factor 4 [Bos taurus].
Length = 180
Score = 169 bits (428), Expect = 3e-42
Identities = 79/166 (47%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+Q+ ELQ +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + + L L S+R+ W +Q A G L G+DWL +++S R
Sbjct: 135 AISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>ref|XP_002686040.1| PREDICTED: ADP-ribosylation factor 1-like [Bos taurus].
Length = 181
Score = 167 bits (424), Expect = 9e-42
Identities = 77/166 (46%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +W VGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWHVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLLFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|XP_001253266.1| PREDICTED: ADP-ribosylation factor 1 isoform 1 [Bos taurus].
Length = 181
Score = 167 bits (424), Expect = 9e-42
Identities = 77/166 (46%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +W VGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWHVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLLFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|NP_001077140.1| ADP-ribosylation factor 5 [Bos taurus].
Length = 180
Score = 167 bits (422), Expect = 2e-41
Identities = 78/166 (46%), Positives = 112/166 (67%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+Q+ ELQ +L E+ L A LL+FANKQD+P A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + L L +RS W +Q A G L G+DWL ++S R
Sbjct: 135 PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 159 bits (402), Expect = 3e-39
Identities = 77/165 (46%), Positives = 110/165 (66%), Gaps = 1/165 (0%)
Frame = +3
Query: 78 RELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
+E+R+LMLGLD AGKTTIL K G+ + TI PT+GFN++T+ ++ K N+WDVGGQ +
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 70
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFANKQDLP A+
Sbjct: 71 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 130
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISS 569
I+E L L IR +W +Q A +G+ L G+ WL + S
Sbjct: 131 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,930,085
Number of extensions: 1175967
Number of successful extensions: 8258
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 7963
Number of HSP's successfully gapped: 67
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003611
(940 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540874.2| PREDICTED: similar to ADP-ribosylation factor-l... 365 e-101
Alignment gi|XP_866707.1| PREDICTED: similar to ADP-ribosylation factor-l... 303 2e-82
Alignment gi|XP_851191.1| PREDICTED: similar to ADP-ribosylation factor-l... 285 4e-77
Alignment gi|XP_534999.2| PREDICTED: similar to ADP-ribosylation factor-l... 206 2e-53
Alignment gi|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3... 172 5e-43
Alignment gi|XP_537606.1| PREDICTED: similar to ADP-ribosylation factor 2... 169 3e-42
Alignment gi|XP_850048.1| PREDICTED: similar to ADP-ribosylation factor 2... 169 3e-42
Alignment gi|XP_849047.1| PREDICTED: similar to ADP-ribosylation factor 4... 169 3e-42
Alignment gi|XP_532438.2| PREDICTED: similar to ADP-ribosylation factor 5... 167 2e-41
Alignment gi|XP_862902.1| PREDICTED: similar to ADP-ribosylation factor 3... 163 2e-40
>ref|XP_540874.2| PREDICTED: similar to ADP-ribosylation factor-like protein 2
isoform 1 [Canis familiaris].
Length = 184
Score = 365 bits (936), Expect = e-101
Identities = 181/184 (98%), Positives = 181/184 (98%)
Frame = +3
Query: 36 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 215
MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 216 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 395
KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120
Query: 396 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 575
LIFANKQDLPGALSS AIREALELDSI SHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
Sbjct: 121 LIFANKQDLPGALSSNAIREALELDSIHSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 180
Query: 576 FMAD 587
F AD
Sbjct: 181 FTAD 184
>ref|XP_866707.1| PREDICTED: similar to ADP-ribosylation factor-like protein 2
isoform 2 [Canis familiaris].
Length = 157
Score = 303 bits (775), Expect = 2e-82
Identities = 155/184 (84%), Positives = 155/184 (84%)
Frame = +3
Query: 36 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 215
MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 216 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 395
KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE-------- 112
Query: 396 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 575
EALELDSI SHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
Sbjct: 113 -------------------EALELDSIHSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 153
Query: 576 FMAD 587
F AD
Sbjct: 154 FTAD 157
>ref|XP_851191.1| PREDICTED: similar to ADP-ribosylation factor-like protein 2 [Canis
familiaris].
Length = 163
Score = 285 bits (729), Expect = 4e-77
Identities = 151/184 (82%), Positives = 154/184 (83%)
Frame = +3
Query: 36 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 215
MGLLTILKKMKQKERELRLL LGLDNAGKTTILKKFNG D DTISP LGFNIKTLEHRGF
Sbjct: 1 MGLLTILKKMKQKERELRLLTLGLDNAGKTTILKKFNGVDTDTISPMLGFNIKTLEHRGF 60
Query: 216 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 395
K ST+GLIWVVDSA+RQRMQDCQ ELQSLLVEERLAGATL
Sbjct: 61 K---------------------STNGLIWVVDSANRQRMQDCQWELQSLLVEERLAGATL 99
Query: 396 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 575
LIFANKQDLPGALSS AIREALELDSI SHHW IQGCSA+TGENLLPGIDWLLDDISSRI
Sbjct: 100 LIFANKQDLPGALSSNAIREALELDSIHSHHWYIQGCSAITGENLLPGIDWLLDDISSRI 159
Query: 576 FMAD 587
F AD
Sbjct: 160 FTAD 163
>ref|XP_534999.2| PREDICTED: similar to ADP-ribosylation factor-like 3 [Canis
familiaris].
Length = 264
Score = 206 bits (525), Expect = 2e-53
Identities = 102/191 (53%), Positives = 144/191 (75%), Gaps = 1/191 (0%)
Frame = +3
Query: 3 KKQRLGGGYWDMGLLTILKKMKQK-ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTL 179
+++ LGG MGLL+IL+K+K ++E+R+L+LGLDNAGKTT+LK+ EDI I+PT
Sbjct: 75 EEEGLGGR---MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ 131
Query: 180 GFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQS 359
GFNIK+++ +GFKLN+WD+GGQ+ +R YWRNYFE+TD LI+V+DSADR+R ++ +EL
Sbjct: 132 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAE 191
Query: 360 LLVEERLAGATLLIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPG 539
LL EE+L+ +LIFANKQDL A + I E L L +IR W IQ CSA+TGE + G
Sbjct: 192 LLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 251
Query: 540 IDWLLDDISSR 572
I+W+ ++S++
Sbjct: 252 INWVCKNVSAK 262
>ref|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3 isoform 1 [Canis
familiaris].
Length = 181
Score = 172 bits (435), Expect = 5e-43
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|XP_537606.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 1 [Canis
familiaris].
Length = 181
Score = 169 bits (429), Expect = 3e-42
Identities = 77/166 (46%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+F NKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180
>ref|XP_850048.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 2 [Canis
familiaris].
Length = 181
Score = 169 bits (429), Expect = 3e-42
Identities = 77/166 (46%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+F NKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180
>ref|XP_849047.1| PREDICTED: similar to ADP-ribosylation factor 4 isoform 2 [Canis
familiaris].
Length = 180
Score = 169 bits (428), Expect = 3e-42
Identities = 79/166 (47%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+Q+ ELQ +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + + L L S+R+ W +Q A G L G+DWL +++S R
Sbjct: 135 AISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>ref|XP_532438.2| PREDICTED: similar to ADP-ribosylation factor 5 isoform 1 [Canis
familiaris].
Length = 180
Score = 167 bits (422), Expect = 2e-41
Identities = 78/166 (46%), Positives = 112/166 (67%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+Q+ ELQ +L E+ L A LL+FANKQD+P A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + L L +RS W +Q A G L G+DWL ++S R
Sbjct: 135 PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|XP_862902.1| PREDICTED: similar to ADP-ribosylation factor 3 isoform 2 [Canis
familiaris].
Length = 187
Score = 163 bits (412), Expect = 2e-40
Identities = 77/172 (44%), Positives = 115/172 (66%), Gaps = 6/172 (3%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLG------FNIKTLEHRGFKLNIWDV 236
++E+R+LM+GLD AGKTTIL K +I T PT+ FN++T+E++ +WDV
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIAEKVSSWFNVETVEYKNISFTVWDV 74
Query: 237 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 416
GGQ +R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQ
Sbjct: 75 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 134
Query: 417 DLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
DLP A+++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 186
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,389,831
Number of extensions: 1193184
Number of successful extensions: 8629
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 8338
Number of HSP's successfully gapped: 71
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003611
(940 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001658.2| ADP-ribosylation factor-like protein 2 isoform ... 365 e-101
Alignment gi|NP_001186674.1| ADP-ribosylation factor-like protein 2 isofo... 303 1e-82
Alignment gi|NP_004302.1| ADP-ribosylation factor-like protein 3 [Homo sa... 202 4e-52
Alignment gi|NP_001650.1| ADP-ribosylation factor 3 [Homo sapiens]. 172 5e-43
Alignment gi|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens]. 171 1e-42
Alignment gi|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens]. 171 1e-42
Alignment gi|NP_001019397.1| ADP-ribosylation factor 1 [Homo sapiens]. 171 1e-42
Alignment gi|NP_001649.1| ADP-ribosylation factor 1 [Homo sapiens]. 171 1e-42
Alignment gi|NP_001653.1| ADP-ribosylation factor 5 [Homo sapiens]. 167 2e-41
Alignment gi|NP_001651.1| ADP-ribosylation factor 4 [Homo sapiens]. 166 3e-41
>ref|NP_001658.2| ADP-ribosylation factor-like protein 2 isoform 1 [Homo sapiens].
Length = 184
Score = 365 bits (937), Expect = e-101
Identities = 181/184 (98%), Positives = 181/184 (98%)
Frame = +3
Query: 36 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 215
MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 216 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 395
KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120
Query: 396 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 575
LIFANKQDLPGALSS AIRE LELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
Sbjct: 121 LIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 180
Query: 576 FMAD 587
F AD
Sbjct: 181 FTAD 184
>ref|NP_001186674.1| ADP-ribosylation factor-like protein 2 isoform 2 [Homo sapiens].
Length = 157
Score = 303 bits (776), Expect = 1e-82
Identities = 155/184 (84%), Positives = 155/184 (84%)
Frame = +3
Query: 36 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 215
MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 216 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 395
KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE-------- 112
Query: 396 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 575
E LELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
Sbjct: 113 -------------------EVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 153
Query: 576 FMAD 587
F AD
Sbjct: 154 FTAD 157
>ref|NP_004302.1| ADP-ribosylation factor-like protein 3 [Homo sapiens].
Length = 182
Score = 202 bits (514), Expect = 4e-52
Identities = 96/180 (53%), Positives = 138/180 (76%), Gaps = 1/180 (0%)
Frame = +3
Query: 36 MGLLTILKKMKQK-ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRG 212
MGLL+IL+K+K ++E+R+L+LGLDNAGKTT+LK+ EDI I+PT GFNIK+++ +G
Sbjct: 1 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG 60
Query: 213 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 392
FKLN+WD+GGQ+ +R YW+NYFE+TD LI+V+DSADR+R ++ +EL LL EE+L+
Sbjct: 61 FKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVP 120
Query: 393 LLIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+LIFANKQDL A + I E L L +IR W IQ CSA+TGE + G++W+ +++++
Sbjct: 121 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>ref|NP_001650.1| ADP-ribosylation factor 3 [Homo sapiens].
Length = 181
Score = 172 bits (435), Expect = 5e-43
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 171 bits (432), Expect = 1e-42
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 171 bits (432), Expect = 1e-42
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|NP_001019397.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 171 bits (432), Expect = 1e-42
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|NP_001649.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 171 bits (432), Expect = 1e-42
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|NP_001653.1| ADP-ribosylation factor 5 [Homo sapiens].
Length = 180
Score = 167 bits (422), Expect = 2e-41
Identities = 78/166 (46%), Positives = 112/166 (67%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+Q+ ELQ +L E+ L A LL+FANKQD+P A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + L L +RS W +Q A G L G+DWL ++S R
Sbjct: 135 PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|NP_001651.1| ADP-ribosylation factor 4 [Homo sapiens].
Length = 180
Score = 166 bits (420), Expect = 3e-41
Identities = 77/166 (46%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R W++YF++T GLI+VVDS DR+R+Q+ ELQ +L+ + L A LL+FANKQDLP A+
Sbjct: 75 RPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + + L L S+R+ W +Q A G L G+DWL +++S R
Sbjct: 135 AISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,540,095
Number of extensions: 1160386
Number of successful extensions: 8062
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 7734
Number of HSP's successfully gapped: 90
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003611
(940 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062696.2| ADP-ribosylation factor-like protein 2 [Mus mus... 356 2e-98
Alignment gi|NP_062692.1| ADP-ribosylation factor-like protein 3 [Mus mus... 201 5e-52
Alignment gi|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus]. 172 4e-43
Alignment gi|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus]. 171 1e-42
Alignment gi|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus]. 171 1e-42
Alignment gi|NP_031503.1| ADP-ribosylation factor 2 [Mus musculus]. 169 2e-42
Alignment gi|NP_031505.1| ADP-ribosylation factor 4 [Mus musculus]. 167 1e-41
Alignment gi|NP_031506.1| ADP-ribosylation factor 5 [Mus musculus]. 167 1e-41
Alignment gi|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus]. 159 3e-39
Alignment gi|NP_080135.2| ADP-ribosylation factor-like protein 1 [Mus mus... 151 6e-37
>ref|NP_062696.2| ADP-ribosylation factor-like protein 2 [Mus musculus].
Length = 184
Score = 356 bits (913), Expect = 2e-98
Identities = 176/184 (95%), Positives = 180/184 (97%)
Frame = +3
Query: 36 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 215
MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED+DTISPTLGFNIKTLEHRGF
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 60
Query: 216 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 395
KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120
Query: 396 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 575
LIFANKQDLPGALS AI+EALELDSIRSHHW IQGCSAVTGE+LLPGIDWLLDDISSR+
Sbjct: 121 LIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 180
Query: 576 FMAD 587
F AD
Sbjct: 181 FTAD 184
>ref|NP_062692.1| ADP-ribosylation factor-like protein 3 [Mus musculus].
Length = 182
Score = 201 bits (512), Expect = 5e-52
Identities = 96/180 (53%), Positives = 138/180 (76%), Gaps = 1/180 (0%)
Frame = +3
Query: 36 MGLLTILKKMKQK-ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRG 212
MGLL+IL+K+K ++E+R+L+LGLDNAGKTT+LK+ EDI I+PT GFNIK+++ +G
Sbjct: 1 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG 60
Query: 213 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 392
FKLN+WD+GGQ+ +R YWR+YFE+TD LI+V+DSADR+R ++ +EL LL EE+L+
Sbjct: 61 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 120
Query: 393 LLIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+LIFANKQDL A + I E L L +IR W IQ CSA+TGE + G++W+ +++++
Sbjct: 121 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>ref|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus].
Length = 181
Score = 172 bits (435), Expect = 4e-43
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 171 bits (432), Expect = 1e-42
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 171 bits (432), Expect = 1e-42
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|NP_031503.1| ADP-ribosylation factor 2 [Mus musculus].
Length = 181
Score = 169 bits (429), Expect = 2e-42
Identities = 77/166 (46%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+F NKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>ref|NP_031505.1| ADP-ribosylation factor 4 [Mus musculus].
Length = 180
Score = 167 bits (423), Expect = 1e-41
Identities = 78/166 (46%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+Q+ LQ +L+E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + + L L S+R+ W +Q A G L G+DWL +++S R
Sbjct: 135 AISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>ref|NP_031506.1| ADP-ribosylation factor 5 [Mus musculus].
Length = 180
Score = 167 bits (422), Expect = 1e-41
Identities = 78/166 (46%), Positives = 112/166 (67%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+Q+ ELQ +L E+ L A LL+FANKQD+P A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + L L +RS W +Q A G L G+DWL ++S R
Sbjct: 135 PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus].
Length = 175
Score = 159 bits (402), Expect = 3e-39
Identities = 77/165 (46%), Positives = 110/165 (66%), Gaps = 1/165 (0%)
Frame = +3
Query: 78 RELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
+E+R+LMLGLD AGKTTIL K G+ + TI PT+GFN++T+ ++ K N+WDVGGQ +
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 70
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFANKQDLP A+
Sbjct: 71 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 130
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISS 569
I+E L L IR +W +Q A +G+ L G+ WL + S
Sbjct: 131 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>ref|NP_080135.2| ADP-ribosylation factor-like protein 1 [Mus musculus].
Length = 181
Score = 151 bits (382), Expect = 6e-37
Identities = 72/165 (43%), Positives = 109/165 (66%)
Frame = +3
Query: 78 RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 257
RE+R+L+LGLD AGKTTIL + ++ T PT+GFN++T+ ++ K +WD+GGQ S+R
Sbjct: 16 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 75
Query: 258 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 437
YWR Y+ +TD +I+VVDS DR R+ + EL ++L EE L A L++FANKQD+ A++
Sbjct: 76 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 135
Query: 438 SKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ AL L +++ W I SA G L ++WL++ + SR
Sbjct: 136 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,416,359
Number of extensions: 947388
Number of successful extensions: 6479
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 6146
Number of HSP's successfully gapped: 64
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003611
(940 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122597.1| PREDICTED: ADP-ribosylation factor-like prot... 371 e-103
Alignment gi|XP_003353829.1| PREDICTED: ADP-ribosylation factor-like prot... 307 6e-84
Alignment gi|NP_001026955.1| ADP-ribosylation factor-like protein 3 [Sus ... 203 1e-52
Alignment gi|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa]. 172 3e-43
Alignment gi|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa]. 171 7e-43
Alignment gi|NP_001041537.1| ADP-ribosylation factor 4 [Sus scrofa]. 168 3e-42
Alignment gi|NP_001138692.1| ADP-ribosylation factor 4 [Sus scrofa]. 168 3e-42
Alignment gi|NP_001138693.1| ADP-ribosylation factor 5 [Sus scrofa]. 167 1e-41
Alignment gi|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa]. 159 2e-39
Alignment gi|XP_003359843.1| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 150 7e-37
>ref|XP_003122597.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Sus
scrofa].
Length = 184
Score = 371 bits (952), Expect = e-103
Identities = 184/184 (100%), Positives = 184/184 (100%)
Frame = +3
Query: 36 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 215
MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 216 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 395
KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120
Query: 396 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 575
LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
Sbjct: 121 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 180
Query: 576 FMAD 587
FMAD
Sbjct: 181 FMAD 184
>ref|XP_003353829.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Sus
scrofa].
Length = 157
Score = 307 bits (786), Expect = 6e-84
Identities = 157/184 (85%), Positives = 157/184 (85%)
Frame = +3
Query: 36 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 215
MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 216 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 395
KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE-------- 112
Query: 396 LIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 575
EALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI
Sbjct: 113 -------------------EALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRI 153
Query: 576 FMAD 587
FMAD
Sbjct: 154 FMAD 157
>ref|NP_001026955.1| ADP-ribosylation factor-like protein 3 [Sus scrofa].
Length = 182
Score = 203 bits (517), Expect = 1e-52
Identities = 97/180 (53%), Positives = 138/180 (76%), Gaps = 1/180 (0%)
Frame = +3
Query: 36 MGLLTILKKMKQK-ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRG 212
MGLL+IL+K+K ++E+R+L+LGLDNAGKTT+LK+ EDI I+PT GFNIK+++ +G
Sbjct: 1 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG 60
Query: 213 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 392
FKLN+WD+GGQ+ +R YWRNYFE+TD LI+V+DSADR+R ++ +EL LL EE+L+
Sbjct: 61 FKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVP 120
Query: 393 LLIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+LIFANKQDL A + I E L L +IR W IQ CSA+TGE + G++W+ +++++
Sbjct: 121 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>ref|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa].
Length = 181
Score = 172 bits (435), Expect = 3e-43
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKSISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa].
Length = 181
Score = 171 bits (432), Expect = 7e-43
Identities = 78/166 (46%), Positives = 116/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>ref|NP_001041537.1| ADP-ribosylation factor 4 [Sus scrofa].
Length = 180
Score = 168 bits (426), Expect = 3e-42
Identities = 79/166 (47%), Positives = 115/166 (69%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+Q+ ELQ +L E+ L A LL+FANKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLFANKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + + L L S+R+ W +Q A G L G+DWL +++S R
Sbjct: 135 AISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>ref|NP_001138692.1| ADP-ribosylation factor 4 [Sus scrofa].
Length = 181
Score = 168 bits (426), Expect = 3e-42
Identities = 77/166 (46%), Positives = 114/166 (68%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++E+R LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKEMRTLMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+F NKQDLP A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
++ I + L L S+R +W IQ A +G+ L G+DWL + + ++
Sbjct: 135 NAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>ref|NP_001138693.1| ADP-ribosylation factor 5 [Sus scrofa].
Length = 180
Score = 167 bits (422), Expect = 1e-41
Identities = 78/166 (46%), Positives = 112/166 (67%)
Frame = +3
Query: 75 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
++++R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++ +WDVGGQ +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 74
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+YF++T GLI+VVDS DR+R+Q+ ELQ +L E+ L A LL+FANKQD+P A+
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM 134
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 572
+ + L L +RS W +Q A G L G+DWL ++S R
Sbjct: 135 PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa].
Length = 175
Score = 159 bits (402), Expect = 2e-39
Identities = 77/165 (46%), Positives = 110/165 (66%), Gaps = 1/165 (0%)
Frame = +3
Query: 78 RELRLLMLGLDNAGKTTILKKFN-GEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 254
+E+R+LMLGLD AGKTTIL K G+ + TI PT+GFN++T+ ++ K N+WDVGGQ +
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 70
Query: 255 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 434
R WR+Y+ T GLI+VVD ADR R+ + ++EL ++ + + A +LIFANKQDLP A+
Sbjct: 71 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 130
Query: 435 SSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISS 569
I+E L L IR +W +Q A +G+ L G+ WL + S
Sbjct: 131 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>ref|XP_003359843.1| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like [Sus scrofa].
Length = 232
Score = 150 bits (380), Expect = 7e-37
Identities = 75/158 (47%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Frame = +3
Query: 81 ELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 260
E+R++ LGLD AGKTTIL K ++ PT+GFN++T+E++ K IWDVGG+ LR
Sbjct: 62 EIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP 121
Query: 261 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSS 440
W++Y+ +T +++VVDS+ R R+ + EL LL E+ L A LLIFANKQD+ GALS
Sbjct: 122 LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV 181
Query: 441 KAIREALELDSI-RSHHWCIQGCSAVTGENLLPGIDWL 551
+ I E L L + W IQGC A +G L G+DWL
Sbjct: 182 EEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWL 219
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,068,778
Number of extensions: 783051
Number of successful extensions: 5337
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 5139
Number of HSP's successfully gapped: 64
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003611
(940 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 511 e-142
>Sscrofa_Chr02
|| Length = 162569375
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Minus
Query: 454 aggccctggagctggactccatccgcagccaccactggtgcatccagggctgcagtgccg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290472 aggccctggagctggactccatccgcagccaccactggtgcatccagggctgcagtgccg 6290413
Query: 514 tcaccggggagaacctgttgcctggcatcgactggctcctggatgacatctccagccgca 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290412 tcaccggggagaacctgttgcctggcatcgactggctcctggatgacatctccagccgca 6290353
Query: 574 tcttcatggccgactgagccactccagatgccccctcacctcacggtccaggcgccccca 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290352 tcttcatggccgactgagccactccagatgccccctcacctcacggtccaggcgccccca 6290293
Query: 634 ccaggccctcgccaggcaccatccacgcgggcatgggagtcagccagccccactaacacc 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290292 ccaggccctcgccaggcaccatccacgcgggcatgggagtcagccagccccactaacacc 6290233
Query: 694 cctgccccactccataac 711
||||||||||||||||||
Sbjct: 6290232 cctgccccactccataac 6290215
Score = 347 bits (175), Expect = 7e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 742 ccggggccagccggctcccgccctggctgtcaccctggctcctaacttggcctgcggcag 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290184 ccggggccagccggctcccgccctggctgtcaccctggctcctaacttggcctgcggcag 6290125
Query: 802 cagcaactataccaagaagagagggctggggctgggagggggctgcgtctgctgctgtca 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290124 cagcaactataccaagaagagagggctggggctgggagggggctgcgtctgctgctgtca 6290065
Query: 862 aggctgtgggcctcgtcttttgctcagctgtgagaataaagtgttcctcgccccc 916
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290064 aggctgtgggcctcgtcttttgctcagctgtgagaataaagtgttcctcgccccc 6290010
Score = 325 bits (164), Expect = 2e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 211 gattcaagctgaacatctgggatgtgggcggccagaagtccctgcggtcctactggcgga 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295170 gattcaagctgaacatctgggatgtgggcggccagaagtccctgcggtcctactggcgga 6295111
Query: 271 actacttcgagagcaccgacggcctcatctgggtggtggacagcgccgaccgccagcgca 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295110 actacttcgagagcaccgacggcctcatctgggtggtggacagcgccgaccgccagcgca 6295051
Query: 331 tgcaggactgtcagcgggagctccagagcctgctggtggaggag 374
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295050 tgcaggactgtcagcgggagctccagagcctgctggtggaggag 6295007
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 101 cggcctggacaatgctggcaaaacaaccatcctcaagaagttcaacggggaagacattga 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295368 cggcctggacaatgctggcaaaacaaccatcctcaagaagttcaacggggaagacattga 6295309
Query: 161 caccatctccccgacgctgggctttaacatcaagaccctggagcaccgagg 211
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295308 caccatctccccgacgctgggctttaacatcaagaccctggagcaccgagg 6295258
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 1 ggaagaaacagcggctgggagggggctactgggacatggggcttctgaccattctgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6299014 ggaagaaacagcggctgggagggggctactgggacatggggcttctgaccattctgaaga 6298955
Query: 61 agatgaagcagaaagagcgagagctgcgactgctaatgct 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 6298954 agatgaagcagaaagagcgagagctgcgactgctaatgct 6298915
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 373 agcgcctggctggtgccaccctcctcatctttgccaacaagcaggacctgcccggagcac 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6292470 agcgcctggctggtgccaccctcctcatctttgccaacaagcaggacctgcccggagcac 6292411
Query: 433 tgtcctctaaggcgattcgcgagg 456
||||||||||||||||||||||||
Sbjct: 6292410 tgtcctctaaggcgattcgcgagg 6292387
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,300,572
Number of extensions: 201
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 6
Length of query: 940
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 919
Effective length of database: 2,808,413,156
Effective search space: 2580931690364
Effective search space used: 2580931690364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)