Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003612
(1196 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092379.1| ETS-related transcription factor Elf-3 [Bos ... 564 e-161
Alignment gi|NP_001033125.1| ETS homologous factor [Bos taurus]. 159 6e-39
Alignment gi|NP_001019740.1| ETS-related transcription factor Elf-5 [Bos ... 119 5e-27
Alignment gi|NP_001178067.1| ETS-related transcription factor Elf-2 [Bos ... 87 3e-17
Alignment gi|XP_002694390.1| PREDICTED: E74-like factor 2 (ets domain tra... 87 3e-17
Alignment gi|XP_002694389.1| PREDICTED: E74-like factor 2 (ets domain tra... 87 3e-17
Alignment gi|XP_001250103.1| PREDICTED: E74-like factor 2 (ets domain tra... 87 3e-17
Alignment gi|NP_001178958.1| ETS-related transcription factor Elf-4 [Bos ... 84 3e-16
Alignment gi|XP_002699565.1| PREDICTED: E74-like factor 4 (ets domain tra... 84 3e-16
Alignment gi|NP_001071321.1| ETS-related transcription factor Elf-1 [Bos ... 82 1e-15
>ref|NP_001092379.1| ETS-related transcription factor Elf-3 [Bos taurus].
Length = 372
Score = 564 bits (1454), Expect = e-161
Identities = 280/354 (79%), Positives = 292/354 (82%)
Frame = +2
Query: 134 MAATCEISNVFSNYFSTMYSSEDPTLASVPAAATFGADDLVLALGSPQMPLEGPEKASWS 313
MAATCEISNVFSNYFSTMYSS+DPTLASVP A TFGADDLVLALGSPQM LEG EK+SW
Sbjct: 1 MAATCEISNVFSNYFSTMYSSDDPTLASVPPAPTFGADDLVLALGSPQMALEGTEKSSWL 60
Query: 314 GEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLGDQ 493
GEQPQLWSKAQVLDW+SYQ EKH+ D TIDLSRC++DGAALCRCAPEELRL+FGPLGDQ
Sbjct: 61 GEQPQLWSKAQVLDWVSYQAEKHRCDPGTIDLSRCELDGAALCRCAPEELRLLFGPLGDQ 120
Query: 494 LYAQLWDLTSSFPDELSWIMELLEKDSMTLQEPLGDQGPFDQGSPFAQEMLEDCRQPSPF 673
LY+QLWDLTSSFPDELSWIMELLEKDS+ LQEPLG+QGPFDQGSPFAQEMLEDCRQ SP
Sbjct: 121 LYSQLWDLTSSFPDELSWIMELLEKDSLALQEPLGEQGPFDQGSPFAQEMLEDCRQASPT 180
Query: 674 YXXXXXXXXXXXXXXDVSTAGTXXXXXXXXXXXXXXXXXLDAPDSKPFSGDGFPDYKKGD 853
Y DVST GT LDAPDSK F GDGFPDYKKG+
Sbjct: 181 YPGSFGARAPSPGSSDVSTTGTGASQSPHASDSGGSDVDLDAPDSKLFPGDGFPDYKKGE 240
Query: 854 LXXXXXXXXXXXXLSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRP 1033
L LSKESR CLEG KSKHAPRGTHLWEFIRDILI+PELNEGLMKWENR
Sbjct: 241 LKHGKRKRGRPRKLSKESRECLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRQ 300
Query: 1034 EGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
EGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 301 EGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGRRLVYK 354
>ref|NP_001033125.1| ETS homologous factor [Bos taurus].
Length = 300
Score = 159 bits (401), Expect = 6e-39
Identities = 73/87 (83%), Positives = 81/87 (93%)
Frame = +2
Query: 935 KHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTY 1114
KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EG+F+FL+SEAVAQLWG+KK NSSMTY
Sbjct: 201 KHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGKKKNNSSMTY 260
Query: 1115 EKLSRAMRYYYKREILERVDGPRLVYK 1195
EKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 261 EKLSRAMRYYYKREILERVDGRRLVYK 287
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 308 WSGEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLG 487
W PQ W+K QV +W+ + ++ ++ DAS I D++G LC + +E G G
Sbjct: 42 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDVNGEHLCSMSLQEFTRAAGTAG 101
Query: 488 DQLYAQLWDL 517
LY+ L L
Sbjct: 102 QLLYSNLQHL 111
>ref|NP_001019740.1| ETS-related transcription factor Elf-5 [Bos taurus].
Length = 255
Score = 119 bits (298), Expect = 5e-27
Identities = 53/88 (60%), Positives = 75/88 (85%)
Frame = +2
Query: 932 SKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMT 1111
S+ + + +HLWEF+RD+L++PE N G+++WE+R +G+F+ ++SEA+A++WGQ+KKN MT
Sbjct: 156 SRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMT 215
Query: 1112 YEKLSRAMRYYYKREILERVDGPRLVYK 1195
YEKLSRA+RYYYK ILERVD RLVYK
Sbjct: 216 YEKLSRALRYYYKTGILERVD-RRLVYK 242
>ref|NP_001178067.1| ETS-related transcription factor Elf-2 [Bos taurus].
Length = 582
Score = 87.0 bits (214), Expect = 3e-17
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +2
Query: 953 THLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRA 1132
T+LWEF+ D+L + +KW R +G+FK + S+AV++LWG+ K M YE + RA
Sbjct: 196 TYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRA 255
Query: 1133 MRYYYKREILERVDGPRLVYK 1195
+RYYY+R IL +V+G RLVY+
Sbjct: 256 LRYYYQRGILAKVEGQRLVYQ 276
>ref|XP_002694390.1| PREDICTED: E74-like factor 2 (ets domain transcription factor)
isoform 2 [Bos taurus].
Length = 534
Score = 87.0 bits (214), Expect = 3e-17
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +2
Query: 953 THLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRA 1132
T+LWEF+ D+L + +KW R +G+FK + S+AV++LWG+ K M YE + RA
Sbjct: 148 TYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRA 207
Query: 1133 MRYYYKREILERVDGPRLVYK 1195
+RYYY+R IL +V+G RLVY+
Sbjct: 208 LRYYYQRGILAKVEGQRLVYQ 228
>ref|XP_002694389.1| PREDICTED: E74-like factor 2 (ets domain transcription factor)
isoform 1 [Bos taurus].
Length = 582
Score = 87.0 bits (214), Expect = 3e-17
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +2
Query: 953 THLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRA 1132
T+LWEF+ D+L + +KW R +G+FK + S+AV++LWG+ K M YE + RA
Sbjct: 196 TYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRA 255
Query: 1133 MRYYYKREILERVDGPRLVYK 1195
+RYYY+R IL +V+G RLVY+
Sbjct: 256 LRYYYQRGILAKVEGQRLVYQ 276
>ref|XP_001250103.1| PREDICTED: E74-like factor 2 (ets domain transcription factor)
isoform 2 [Bos taurus].
Length = 534
Score = 87.0 bits (214), Expect = 3e-17
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +2
Query: 953 THLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRA 1132
T+LWEF+ D+L + +KW R +G+FK + S+AV++LWG+ K M YE + RA
Sbjct: 148 TYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRA 207
Query: 1133 MRYYYKREILERVDGPRLVYK 1195
+RYYY+R IL +V+G RLVY+
Sbjct: 208 LRYYYQRGILAKVEGQRLVYQ 228
>ref|NP_001178958.1| ETS-related transcription factor Elf-4 [Bos taurus].
Length = 662
Score = 83.6 bits (205), Expect = 3e-16
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +2
Query: 929 KSKHAPRGT-HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSS 1105
KSK T +LWEF+ +L + +KW R +G+FK + S+AV++LWG++K
Sbjct: 199 KSKDGKGSTIYLWEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQKNKPD 258
Query: 1106 MTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
M YE + RA+RYYY+R IL +V+G RLVY+
Sbjct: 259 MNYETMGRALRYYYQRGILAKVEGQRLVYQ 288
>ref|XP_002699565.1| PREDICTED: E74-like factor 4 (ets domain transcription factor) [Bos
taurus].
Length = 662
Score = 83.6 bits (205), Expect = 3e-16
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +2
Query: 929 KSKHAPRGT-HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSS 1105
KSK T +LWEF+ +L + +KW R +G+FK + S+AV++LWG++K
Sbjct: 199 KSKDGKGSTIYLWEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQKNKPD 258
Query: 1106 MTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
M YE + RA+RYYY+R IL +V+G RLVY+
Sbjct: 259 MNYETMGRALRYYYQRGILAKVEGQRLVYQ 288
>ref|NP_001071321.1| ETS-related transcription factor Elf-1 [Bos taurus].
Length = 614
Score = 81.6 bits (200), Expect = 1e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 956 HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAM 1135
+LWEF+ +L + +KW R +G+FK + S+AV++LWG+ K M YE + RA+
Sbjct: 209 YLWEFLLALLQDKATCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRAL 268
Query: 1136 RYYYKREILERVDGPRLVYK 1195
RYYY+R IL +V+G RLVY+
Sbjct: 269 RYYYQRGILAKVEGQRLVYQ 288
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,627,673
Number of extensions: 1304664
Number of successful extensions: 8549
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 8476
Number of HSP's successfully gapped: 38
Length of query: 398
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 294
Effective length of database: 14,240,222
Effective search space: 4186625268
Effective search space used: 4186625268
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003612
(1196 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547356.2| PREDICTED: similar to E74-like factor 3 (ets do... 535 e-152
Alignment gi|XP_540546.2| PREDICTED: similar to ets homologous factor iso... 159 5e-39
Alignment gi|XP_857258.1| PREDICTED: similar to ets homologous factor iso... 159 5e-39
Alignment gi|XP_851152.1| PREDICTED: similar to E74-like factor 5 ESE-2a ... 120 3e-27
Alignment gi|XP_533288.2| PREDICTED: similar to ETS-related transcription... 87 3e-17
Alignment gi|XP_856018.1| PREDICTED: similar to E74-like factor 2 (ets do... 87 3e-17
Alignment gi|XP_855980.1| PREDICTED: similar to E74-like factor 2 (ets do... 87 3e-17
Alignment gi|XP_549250.1| PREDICTED: similar to E74-like factor 4 (ets do... 84 3e-16
Alignment gi|XP_857136.1| PREDICTED: similar to E74-like factor 1 (ets do... 82 1e-15
Alignment gi|XP_857092.1| PREDICTED: similar to E74-like factor 1 (ets do... 82 1e-15
>ref|XP_547356.2| PREDICTED: similar to E74-like factor 3 (ets domain transcription
factor, epithelial-specific ) [Canis familiaris].
Length = 475
Score = 535 bits (1378), Expect = e-152
Identities = 272/363 (74%), Positives = 284/363 (78%)
Frame = +2
Query: 107 TPSAATGSLMAATCEISNVFSNYFSTMYSSEDPTLASVPAAATFGADDLVLALGSPQMPL 286
T + G LMAATCEISNVFSNYFS MYSSEDP LAS P AATFGADDLVL L +PQMP
Sbjct: 98 THTPPPGGLMAATCEISNVFSNYFSAMYSSEDPALASAPPAATFGADDLVLTLSNPQMPP 157
Query: 287 EGPEKASWSGEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELR 466
EG EKASWSG+QPQLWSKAQVLDWISYQVEK+KYDAS ID SRCDMDGA LC CAPEELR
Sbjct: 158 EGTEKASWSGKQPQLWSKAQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCAPEELR 217
Query: 467 LVFGPLGDQLYAQLWDLTSSFPDELSWIMELLEKDSMTLQEPLGDQGPFDQGSPFAQEML 646
LVFGPLGDQLY+QLWDLT+SFPDELSWI+ELLEKDSM QE L GPFDQGSPF+QEML
Sbjct: 218 LVFGPLGDQLYSQLWDLTASFPDELSWIIELLEKDSMAFQESL---GPFDQGSPFSQEML 274
Query: 647 EDCRQPSPFYXXXXXXXXXXXXXXDVSTAGTXXXXXXXXXXXXXXXXXLDAPDSKPFSGD 826
E+ RQ P++ DVSTAGT LD DSK FS D
Sbjct: 275 EESRQAGPYFPGSYGPGALSPGSSDVSTAGTATSQSPHSSDSGGSDVDLDPTDSKLFSRD 334
Query: 827 GFPDYKKGDLXXXXXXXXXXXXLSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNE 1006
GFPDYKKGD LSKESR CLEG KSKHAPRGTHLWEFIRDILI+PELNE
Sbjct: 335 GFPDYKKGDPKHGKRKRGRPRKLSKESRECLEGKKSKHAPRGTHLWEFIRDILIHPELNE 394
Query: 1007 GLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRL 1186
GLMKWENR EGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKR ILERVDG RL
Sbjct: 395 GLMKWENRQEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKRGILERVDGRRL 454
Query: 1187 VYK 1195
VYK
Sbjct: 455 VYK 457
>ref|XP_540546.2| PREDICTED: similar to ets homologous factor isoform 1 [Canis
familiaris].
Length = 300
Score = 159 bits (402), Expect = 5e-39
Identities = 74/101 (73%), Positives = 85/101 (84%)
Frame = +2
Query: 893 LSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVA 1072
+ KE + KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 187 MKKEQEHPAKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 246
Query: 1073 QLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
QLWG+KK N+SMTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 247 QLWGKKKNNNSMTYEKLSRAMRYYYKREILERVDGRRLVYK 287
Score = 49.7 bits (117), Expect = 6e-06
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 308 WSGEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLG 487
W PQ W+K QV +W+ + ++ ++ DAS I D++G LC + +E G G
Sbjct: 42 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDVNGEHLCSMSLQEFTRAAGTAG 101
Query: 488 DQLYAQLWDL 517
LY+ L L
Sbjct: 102 QLLYSNLQHL 111
>ref|XP_857258.1| PREDICTED: similar to ets homologous factor isoform 2 [Canis
familiaris].
Length = 277
Score = 159 bits (402), Expect = 5e-39
Identities = 74/101 (73%), Positives = 85/101 (84%)
Frame = +2
Query: 893 LSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVA 1072
+ KE + KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 164 MKKEQEHPAKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 223
Query: 1073 QLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
QLWG+KK N+SMTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 224 QLWGKKKNNNSMTYEKLSRAMRYYYKREILERVDGRRLVYK 264
Score = 49.7 bits (117), Expect = 6e-06
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 308 WSGEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLG 487
W PQ W+K QV +W+ + ++ ++ DAS I D++G LC + +E G G
Sbjct: 42 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDVNGEHLCSMSLQEFTRAAGTAG 101
Query: 488 DQLYAQLWDL 517
LY+ L L
Sbjct: 102 QLLYSNLQHL 111
>ref|XP_851152.1| PREDICTED: similar to E74-like factor 5 ESE-2a [Canis familiaris].
Length = 298
Score = 120 bits (300), Expect = 3e-27
Identities = 53/90 (58%), Positives = 77/90 (85%)
Frame = +2
Query: 926 TKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSS 1105
++S+ + + +HLWEF+RD+L++PE N G+++WE+R +G+F+ ++SEA+A++WGQ+KKN
Sbjct: 197 SQSRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDR 256
Query: 1106 MTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
MTYEKLSRA+RYYYK ILERVD RLVYK
Sbjct: 257 MTYEKLSRALRYYYKTGILERVD-RRLVYK 285
>ref|XP_533288.2| PREDICTED: similar to ETS-related transcription factor Elf-2
(E74-like factor 2) (New ETS-related factor) isoform 1
[Canis familiaris].
Length = 592
Score = 87.0 bits (214), Expect = 3e-17
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +2
Query: 953 THLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRA 1132
T+LWEF+ D+L + +KW R +G+FK + S+AV++LWG+ K M YE + RA
Sbjct: 208 TYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRA 267
Query: 1133 MRYYYKREILERVDGPRLVYK 1195
+RYYY+R IL +V+G RLVY+
Sbjct: 268 LRYYYQRGILAKVEGQRLVYQ 288
>ref|XP_856018.1| PREDICTED: similar to E74-like factor 2 (ets domain transcription
factor) isoform 1 isoform 4 [Canis familiaris].
Length = 580
Score = 87.0 bits (214), Expect = 3e-17
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +2
Query: 953 THLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRA 1132
T+LWEF+ D+L + +KW R +G+FK + S+AV++LWG+ K M YE + RA
Sbjct: 196 TYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRA 255
Query: 1133 MRYYYKREILERVDGPRLVYK 1195
+RYYY+R IL +V+G RLVY+
Sbjct: 256 LRYYYQRGILAKVEGQRLVYQ 276
>ref|XP_855980.1| PREDICTED: similar to E74-like factor 2 (ets domain transcription
factor) isoform 1 isoform 3 [Canis familiaris].
Length = 580
Score = 87.0 bits (214), Expect = 3e-17
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +2
Query: 953 THLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRA 1132
T+LWEF+ D+L + +KW R +G+FK + S+AV++LWG+ K M YE + RA
Sbjct: 196 TYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRA 255
Query: 1133 MRYYYKREILERVDGPRLVYK 1195
+RYYY+R IL +V+G RLVY+
Sbjct: 256 LRYYYQRGILAKVEGQRLVYQ 276
>ref|XP_549250.1| PREDICTED: similar to E74-like factor 4 (ets domain transcription
factor) [Canis familiaris].
Length = 663
Score = 83.6 bits (205), Expect = 3e-16
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +2
Query: 929 KSKHAPRGT-HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSS 1105
KSK T +LWEF+ +L + +KW R +G+FK + S+AV++LWG++K
Sbjct: 201 KSKDGKGSTIYLWEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQKNKPD 260
Query: 1106 MTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
M YE + RA+RYYY+R IL +V+G RLVY+
Sbjct: 261 MNYETMGRALRYYYQRGILAKVEGQRLVYQ 290
>ref|XP_857136.1| PREDICTED: similar to E74-like factor 1 (ets domain transcription
factor) isoform 6 [Canis familiaris].
Length = 629
Score = 81.6 bits (200), Expect = 1e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 956 HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAM 1135
+LWEF+ +L + +KW R +G+FK + S+AV++LWG+ K M YE + RA+
Sbjct: 219 YLWEFLLALLQDKATCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRAL 278
Query: 1136 RYYYKREILERVDGPRLVYK 1195
RYYY+R IL +V+G RLVY+
Sbjct: 279 RYYYQRGILAKVEGQRLVYQ 298
>ref|XP_857092.1| PREDICTED: similar to E74-like factor 1 (ets domain transcription
factor) isoform 5 [Canis familiaris].
Length = 595
Score = 81.6 bits (200), Expect = 1e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 956 HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAM 1135
+LWEF+ +L + +KW R +G+FK + S+AV++LWG+ K M YE + RA+
Sbjct: 185 YLWEFLLALLQDKATCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRAL 244
Query: 1136 RYYYKREILERVDGPRLVYK 1195
RYYY+R IL +V+G RLVY+
Sbjct: 245 RYYYQRGILAKVEGQRLVYQ 264
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,703,929
Number of extensions: 1349362
Number of successful extensions: 8980
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 8893
Number of HSP's successfully gapped: 53
Length of query: 398
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 293
Effective length of database: 15,374,224
Effective search space: 4504647632
Effective search space used: 4504647632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003612
(1196 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107781.1| ETS-related transcription factor Elf-3 [Homo... 498 e-141
Alignment gi|NP_004424.3| ETS-related transcription factor Elf-3 [Homo sa... 498 e-141
Alignment gi|NP_001193545.1| ETS homologous factor isoform 1 [Homo sapien... 159 5e-39
Alignment gi|NP_001193544.1| ETS homologous factor isoform 3 [Homo sapien... 159 5e-39
Alignment gi|NP_036285.2| ETS homologous factor isoform 2 [Homo sapiens]. 159 5e-39
Alignment gi|NP_001230010.1| ETS-related transcription factor Elf-5 isofo... 119 6e-27
Alignment gi|NP_001230009.1| ETS-related transcription factor Elf-5 isofo... 119 6e-27
Alignment gi|NP_001413.1| ETS-related transcription factor Elf-5 isoform ... 119 6e-27
Alignment gi|NP_938195.1| ETS-related transcription factor Elf-5 isoform ... 119 6e-27
Alignment gi|NP_973728.1| ETS-related transcription factor Elf-2 isoform ... 87 3e-17
>ref|NP_001107781.1| ETS-related transcription factor Elf-3 [Homo sapiens].
Length = 371
Score = 498 bits (1283), Expect = e-141
Identities = 258/354 (72%), Positives = 270/354 (76%)
Frame = +2
Query: 134 MAATCEISNVFSNYFSTMYSSEDPTLASVPAAATFGADDLVLALGSPQMPLEGPEKASWS 313
MAATCEISN+FSNYFS MYSSED TLASVP AATFGADDLVL L +PQM LEG EKASW
Sbjct: 1 MAATCEISNIFSNYFSAMYSSEDSTLASVPPAATFGADDLVLTLSNPQMSLEGTEKASWL 60
Query: 314 GEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLGDQ 493
GEQPQ WSK QVLDWISYQVEK+KYDAS ID SRCDMDGA LC CA EELRLVFGPLGDQ
Sbjct: 61 GEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQ 120
Query: 494 LYAQLWDLTSSFPDELSWIMELLEKDSMTLQEPLGDQGPFDQGSPFAQEMLEDCRQPSPF 673
L+AQL DLTSS DELSWI+ELLEKD M QE L D GPFDQGSPFAQE+L+D +Q SP+
Sbjct: 121 LHAQLRDLTSSSSDELSWIIELLEKDGMAFQEAL-DPGPFDQGSPFAQELLDDGQQASPY 179
Query: 674 YXXXXXXXXXXXXXXDVSTAGTXXXXXXXXXXXXXXXXXLDAPDSKPFSGDGFPDYKKGD 853
+ DVSTAGT LD D K F DGF D KKGD
Sbjct: 180 HPGSCGAGAPSPGSSDVSTAGTGASRSSHSSDSGGSDVDLDPTDGKLFPSDGFRDCKKGD 239
Query: 854 LXXXXXXXXXXXXLSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRP 1033
LSKE CLEG KSKHAPRGTHLWEFIRDILI+PELNEGLMKWENR
Sbjct: 240 PKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRH 299
Query: 1034 EGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
EGVFKFLRSEAVAQLWGQKKKNS+MTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 300 EGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 353
>ref|NP_004424.3| ETS-related transcription factor Elf-3 [Homo sapiens].
Length = 371
Score = 498 bits (1283), Expect = e-141
Identities = 258/354 (72%), Positives = 270/354 (76%)
Frame = +2
Query: 134 MAATCEISNVFSNYFSTMYSSEDPTLASVPAAATFGADDLVLALGSPQMPLEGPEKASWS 313
MAATCEISN+FSNYFS MYSSED TLASVP AATFGADDLVL L +PQM LEG EKASW
Sbjct: 1 MAATCEISNIFSNYFSAMYSSEDSTLASVPPAATFGADDLVLTLSNPQMSLEGTEKASWL 60
Query: 314 GEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLGDQ 493
GEQPQ WSK QVLDWISYQVEK+KYDAS ID SRCDMDGA LC CA EELRLVFGPLGDQ
Sbjct: 61 GEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQ 120
Query: 494 LYAQLWDLTSSFPDELSWIMELLEKDSMTLQEPLGDQGPFDQGSPFAQEMLEDCRQPSPF 673
L+AQL DLTSS DELSWI+ELLEKD M QE L D GPFDQGSPFAQE+L+D +Q SP+
Sbjct: 121 LHAQLRDLTSSSSDELSWIIELLEKDGMAFQEAL-DPGPFDQGSPFAQELLDDGQQASPY 179
Query: 674 YXXXXXXXXXXXXXXDVSTAGTXXXXXXXXXXXXXXXXXLDAPDSKPFSGDGFPDYKKGD 853
+ DVSTAGT LD D K F DGF D KKGD
Sbjct: 180 HPGSCGAGAPSPGSSDVSTAGTGASRSSHSSDSGGSDVDLDPTDGKLFPSDGFRDCKKGD 239
Query: 854 LXXXXXXXXXXXXLSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRP 1033
LSKE CLEG KSKHAPRGTHLWEFIRDILI+PELNEGLMKWENR
Sbjct: 240 PKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRH 299
Query: 1034 EGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
EGVFKFLRSEAVAQLWGQKKKNS+MTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 300 EGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 353
>ref|NP_001193545.1| ETS homologous factor isoform 1 [Homo sapiens].
Length = 322
Score = 159 bits (402), Expect = 5e-39
Identities = 74/87 (85%), Positives = 81/87 (93%)
Frame = +2
Query: 935 KHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTY 1114
KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EGVF+FL+SEAVAQLWG+KK NSSMTY
Sbjct: 223 KHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLWGKKKNNSSMTY 282
Query: 1115 EKLSRAMRYYYKREILERVDGPRLVYK 1195
EKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 283 EKLSRAMRYYYKREILERVDGRRLVYK 309
>ref|NP_001193544.1| ETS homologous factor isoform 3 [Homo sapiens].
Length = 277
Score = 159 bits (402), Expect = 5e-39
Identities = 74/87 (85%), Positives = 81/87 (93%)
Frame = +2
Query: 935 KHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTY 1114
KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EGVF+FL+SEAVAQLWG+KK NSSMTY
Sbjct: 178 KHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLWGKKKNNSSMTY 237
Query: 1115 EKLSRAMRYYYKREILERVDGPRLVYK 1195
EKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 238 EKLSRAMRYYYKREILERVDGRRLVYK 264
>ref|NP_036285.2| ETS homologous factor isoform 2 [Homo sapiens].
Length = 300
Score = 159 bits (402), Expect = 5e-39
Identities = 74/87 (85%), Positives = 81/87 (93%)
Frame = +2
Query: 935 KHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTY 1114
KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EGVF+FL+SEAVAQLWG+KK NSSMTY
Sbjct: 201 KHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLWGKKKNNSSMTY 260
Query: 1115 EKLSRAMRYYYKREILERVDGPRLVYK 1195
EKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 261 EKLSRAMRYYYKREILERVDGRRLVYK 287
>ref|NP_001230010.1| ETS-related transcription factor Elf-5 isoform 4 [Homo sapiens].
Length = 187
Score = 119 bits (298), Expect = 6e-27
Identities = 53/88 (60%), Positives = 75/88 (85%)
Frame = +2
Query: 932 SKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMT 1111
S+ + + +HLWEF+RD+L++PE N G+++WE+R +G+F+ ++SEA+A++WGQ+KKN MT
Sbjct: 88 SRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMT 147
Query: 1112 YEKLSRAMRYYYKREILERVDGPRLVYK 1195
YEKLSRA+RYYYK ILERVD RLVYK
Sbjct: 148 YEKLSRALRYYYKTGILERVD-RRLVYK 174
>ref|NP_001230009.1| ETS-related transcription factor Elf-5 isoform 3 [Homo sapiens].
Length = 160
Score = 119 bits (298), Expect = 6e-27
Identities = 53/88 (60%), Positives = 75/88 (85%)
Frame = +2
Query: 932 SKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMT 1111
S+ + + +HLWEF+RD+L++PE N G+++WE+R +G+F+ ++SEA+A++WGQ+KKN MT
Sbjct: 61 SRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMT 120
Query: 1112 YEKLSRAMRYYYKREILERVDGPRLVYK 1195
YEKLSRA+RYYYK ILERVD RLVYK
Sbjct: 121 YEKLSRALRYYYKTGILERVD-RRLVYK 147
>ref|NP_001413.1| ETS-related transcription factor Elf-5 isoform 2 [Homo sapiens].
Length = 255
Score = 119 bits (298), Expect = 6e-27
Identities = 53/88 (60%), Positives = 75/88 (85%)
Frame = +2
Query: 932 SKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMT 1111
S+ + + +HLWEF+RD+L++PE N G+++WE+R +G+F+ ++SEA+A++WGQ+KKN MT
Sbjct: 156 SRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMT 215
Query: 1112 YEKLSRAMRYYYKREILERVDGPRLVYK 1195
YEKLSRA+RYYYK ILERVD RLVYK
Sbjct: 216 YEKLSRALRYYYKTGILERVD-RRLVYK 242
>ref|NP_938195.1| ETS-related transcription factor Elf-5 isoform 1 [Homo sapiens].
Length = 265
Score = 119 bits (298), Expect = 6e-27
Identities = 53/88 (60%), Positives = 75/88 (85%)
Frame = +2
Query: 932 SKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMT 1111
S+ + + +HLWEF+RD+L++PE N G+++WE+R +G+F+ ++SEA+A++WGQ+KKN MT
Sbjct: 166 SRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMT 225
Query: 1112 YEKLSRAMRYYYKREILERVDGPRLVYK 1195
YEKLSRA+RYYYK ILERVD RLVYK
Sbjct: 226 YEKLSRALRYYYKTGILERVD-RRLVYK 252
>ref|NP_973728.1| ETS-related transcription factor Elf-2 isoform 1 [Homo sapiens].
Length = 581
Score = 87.0 bits (214), Expect = 3e-17
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +2
Query: 953 THLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRA 1132
T+LWEF+ D+L + +KW R +G+FK + S+AV++LWG+ K M YE + RA
Sbjct: 196 TYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRA 255
Query: 1133 MRYYYKREILERVDGPRLVYK 1195
+RYYY+R IL +V+G RLVY+
Sbjct: 256 LRYYYQRGILAKVEGQRLVYQ 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,404,231
Number of extensions: 1296181
Number of successful extensions: 8154
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 8079
Number of HSP's successfully gapped: 62
Length of query: 398
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 293
Effective length of database: 14,835,944
Effective search space: 4346931592
Effective search space used: 4346931592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003612
(1196 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031947.1| ETS-related transcription factor Elf-3 isoform ... 494 e-140
Alignment gi|NP_001156603.1| ETS-related transcription factor Elf-3 isofo... 482 e-136
Alignment gi|NP_031940.1| ETS homologous factor [Mus musculus]. 158 7e-39
Alignment gi|NP_001139285.1| ETS-related transcription factor Elf-5 [Mus ... 119 5e-27
Alignment gi|NP_034255.2| ETS-related transcription factor Elf-5 [Mus mus... 119 5e-27
Alignment gi|NP_075991.1| ETS-related transcription factor Elf-2 [Mus mus... 87 3e-17
Alignment gi|NP_062654.2| ETS-related transcription factor Elf-4 [Mus mus... 84 3e-16
Alignment gi|NP_031946.1| ETS-related transcription factor Elf-1 [Mus mus... 82 1e-15
Alignment gi|NP_038919.1| SAM pointed domain-containing Ets transcription... 79 9e-15
Alignment gi|NP_031949.2| ETS domain-containing protein Elk-4 [Mus muscul... 78 1e-14
>ref|NP_031947.1| ETS-related transcription factor Elf-3 isoform 2 [Mus musculus].
Length = 371
Score = 494 bits (1272), Expect = e-140
Identities = 252/354 (71%), Positives = 271/354 (76%)
Frame = +2
Query: 134 MAATCEISNVFSNYFSTMYSSEDPTLASVPAAATFGADDLVLALGSPQMPLEGPEKASWS 313
MAATCEISNVFSNYF+ MYSSEDPTLA P TFG +DLVL L + QM LEGPEKASW+
Sbjct: 1 MAATCEISNVFSNYFNAMYSSEDPTLAPAPPT-TFGTEDLVLTLNNQQMTLEGPEKASWT 59
Query: 314 GEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLGDQ 493
E+PQ WSK QVL+WISYQVEK+KYDAS+ID SRCDMDGA LC CA EELRLVFGPLGDQ
Sbjct: 60 SERPQFWSKTQVLEWISYQVEKNKYDASSIDFSRCDMDGATLCSCALEELRLVFGPLGDQ 119
Query: 494 LYAQLWDLTSSFPDELSWIMELLEKDSMTLQEPLGDQGPFDQGSPFAQEMLEDCRQPSPF 673
L+AQL DLTS+ DELSWI+ELLEKD M+ QE LGD GPFDQGSPFAQE+L+D RQ SP+
Sbjct: 120 LHAQLRDLTSNSSDELSWIIELLEKDGMSFQESLGDSGPFDQGSPFAQELLDDGRQASPY 179
Query: 674 YXXXXXXXXXXXXXXDVSTAGTXXXXXXXXXXXXXXXXXLDAPDSKPFSGDGFPDYKKGD 853
Y DVSTA T LD +SK F DGFPDYKKG+
Sbjct: 180 YCSTYGPGAPSPGSSDVSTARTATPQSSHASDSGGSDVDLDLTESKVFPRDGFPDYKKGE 239
Query: 854 LXXXXXXXXXXXXLSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRP 1033
LSKE CLEG KSKHAPRGTHLWEFIRDILI+PELNEGLMKWENR
Sbjct: 240 PKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRH 299
Query: 1034 EGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
EGVFKFLRSEAVAQLWGQKKKNS+MTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 300 EGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 353
>ref|NP_001156603.1| ETS-related transcription factor Elf-3 isoform 1 [Mus musculus].
Length = 391
Score = 482 bits (1241), Expect = e-136
Identities = 252/374 (67%), Positives = 271/374 (72%), Gaps = 20/374 (5%)
Frame = +2
Query: 134 MAATCEISNVFSNYFSTMYSSEDPTLASVPAAATFGADDLVLALGSPQMPLEGP------ 295
MAATCEISNVFSNYF+ MYSSEDPTLA P TFG +DLVL L + QM LEGP
Sbjct: 1 MAATCEISNVFSNYFNAMYSSEDPTLAPAPPT-TFGTEDLVLTLNNQQMTLEGPGPQTRS 59
Query: 296 --------------EKASWSGEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGA 433
EKASW+ E+PQ WSK QVL+WISYQVEK+KYDAS+ID SRCDMDGA
Sbjct: 60 QRDRTDPLAVLHLAEKASWTSERPQFWSKTQVLEWISYQVEKNKYDASSIDFSRCDMDGA 119
Query: 434 ALCRCAPEELRLVFGPLGDQLYAQLWDLTSSFPDELSWIMELLEKDSMTLQEPLGDQGPF 613
LC CA EELRLVFGPLGDQL+AQL DLTS+ DELSWI+ELLEKD M+ QE LGD GPF
Sbjct: 120 TLCSCALEELRLVFGPLGDQLHAQLRDLTSNSSDELSWIIELLEKDGMSFQESLGDSGPF 179
Query: 614 DQGSPFAQEMLEDCRQPSPFYXXXXXXXXXXXXXXDVSTAGTXXXXXXXXXXXXXXXXXL 793
DQGSPFAQE+L+D RQ SP+Y DVSTA T L
Sbjct: 180 DQGSPFAQELLDDGRQASPYYCSTYGPGAPSPGSSDVSTARTATPQSSHASDSGGSDVDL 239
Query: 794 DAPDSKPFSGDGFPDYKKGDLXXXXXXXXXXXXLSKESRGCLEGTKSKHAPRGTHLWEFI 973
D +SK F DGFPDYKKG+ LSKE CLEG KSKHAPRGTHLWEFI
Sbjct: 240 DLTESKVFPRDGFPDYKKGEPKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFI 299
Query: 974 RDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKR 1153
RDILI+PELNEGLMKWENR EGVFKFLRSEAVAQLWGQKKKNS+MTYEKLSRAMRYYYKR
Sbjct: 300 RDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKR 359
Query: 1154 EILERVDGPRLVYK 1195
EILERVDG RLVYK
Sbjct: 360 EILERVDGRRLVYK 373
>ref|NP_031940.1| ETS homologous factor [Mus musculus].
Length = 300
Score = 158 bits (400), Expect = 7e-39
Identities = 74/101 (73%), Positives = 86/101 (85%)
Frame = +2
Query: 893 LSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVA 1072
+ KE ++ KH PRGTHLWEFIRDIL++P+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 187 MKKEQDHPVKSHTKKHNPRGTHLWEFIRDILLSPDKNPGLIKWEDRSEGIFRFLKSEAVA 246
Query: 1073 QLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
QLWG+KK NSSMTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 247 QLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYK 287
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +2
Query: 302 ASWSGEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGP 481
+ W PQ W+K QV +W+ + ++ ++ DAS I D+ G LC + +E G
Sbjct: 40 SQWHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDISGEHLCSMSLQEFTRAAGS 99
Query: 482 LGDQLYAQLWDL 517
G LY+ L L
Sbjct: 100 AGQLLYSNLQHL 111
>ref|NP_001139285.1| ETS-related transcription factor Elf-5 [Mus musculus].
Length = 253
Score = 119 bits (298), Expect = 5e-27
Identities = 53/88 (60%), Positives = 75/88 (85%)
Frame = +2
Query: 932 SKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMT 1111
S+ + + +HLWEF+RD+L++PE N G+++WE+R +G+F+ ++SEA+A++WGQ+KKN MT
Sbjct: 154 SRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMT 213
Query: 1112 YEKLSRAMRYYYKREILERVDGPRLVYK 1195
YEKLSRA+RYYYK ILERVD RLVYK
Sbjct: 214 YEKLSRALRYYYKTGILERVD-RRLVYK 240
>ref|NP_034255.2| ETS-related transcription factor Elf-5 [Mus musculus].
Length = 253
Score = 119 bits (298), Expect = 5e-27
Identities = 53/88 (60%), Positives = 75/88 (85%)
Frame = +2
Query: 932 SKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMT 1111
S+ + + +HLWEF+RD+L++PE N G+++WE+R +G+F+ ++SEA+A++WGQ+KKN MT
Sbjct: 154 SRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMT 213
Query: 1112 YEKLSRAMRYYYKREILERVDGPRLVYK 1195
YEKLSRA+RYYYK ILERVD RLVYK
Sbjct: 214 YEKLSRALRYYYKTGILERVD-RRLVYK 240
>ref|NP_075991.1| ETS-related transcription factor Elf-2 [Mus musculus].
Length = 593
Score = 87.0 bits (214), Expect = 3e-17
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +2
Query: 953 THLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRA 1132
T+LWEF+ D+L + +KW R +G+FK + S+AV++LWG+ K M YE + RA
Sbjct: 208 TYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRA 267
Query: 1133 MRYYYKREILERVDGPRLVYK 1195
+RYYY+R IL +V+G RLVY+
Sbjct: 268 LRYYYQRGILAKVEGQRLVYQ 288
>ref|NP_062654.2| ETS-related transcription factor Elf-4 [Mus musculus].
Length = 655
Score = 83.6 bits (205), Expect = 3e-16
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +2
Query: 929 KSKHAPRGT-HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSS 1105
KSK T +LWEF+ +L + +KW R +G+FK + S+AV++LWG++K
Sbjct: 199 KSKDGKGSTIYLWEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQKNKPD 258
Query: 1106 MTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
M YE + RA+RYYY+R IL +V+G RLVY+
Sbjct: 259 MNYETMGRALRYYYQRGILAKVEGQRLVYQ 288
>ref|NP_031946.1| ETS-related transcription factor Elf-1 [Mus musculus].
Length = 612
Score = 81.6 bits (200), Expect = 1e-15
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 956 HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAM 1135
+LWEF+ +L + +KW R +G+FK + S+AV++LWG+ K M YE + RA+
Sbjct: 209 YLWEFLLALLQDKATCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRAL 268
Query: 1136 RYYYKREILERVDGPRLVYK 1195
RYYY+R IL +V+G RLVY+
Sbjct: 269 RYYYQRGILAKVEGQRLVYQ 288
>ref|NP_038919.1| SAM pointed domain-containing Ets transcription factor [Mus
musculus].
Length = 325
Score = 78.6 bits (192), Expect = 9e-15
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Frame = +2
Query: 956 HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAM 1135
HLW+F++++L+ P ++W N+ +G+FK S VA+LWG +K +M Y+KLSR++
Sbjct: 240 HLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGVRKNRPAMNYDKLSRSI 299
Query: 1136 RYYYKREILERVD-GPRLVYK 1195
R YYK+ I+ + D RLVY+
Sbjct: 300 RQYYKKGIIRKPDISQRLVYQ 320
>ref|NP_031949.2| ETS domain-containing protein Elk-4 [Mus musculus].
Length = 430
Score = 78.2 bits (191), Expect = 1e-14
Identities = 36/79 (45%), Positives = 56/79 (70%)
Frame = +2
Query: 959 LWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMR 1138
LW+F+ +L P+ NE ++ W + G FK L++E VA+LWG +K +M Y+KLSRA+R
Sbjct: 7 LWQFLLQLLQEPQ-NEHMICWTSN-NGEFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 64
Query: 1139 YYYKREILERVDGPRLVYK 1195
YYY + I+++V+G + VYK
Sbjct: 65 YYYVKNIIKKVNGQKFVYK 83
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,896,974
Number of extensions: 1052802
Number of successful extensions: 5969
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 5916
Number of HSP's successfully gapped: 35
Length of query: 398
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 295
Effective length of database: 12,523,851
Effective search space: 3694536045
Effective search space used: 3694536045
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003612
(1196 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130654.2| PREDICTED: ETS-related transcription factor ... 479 e-135
Alignment gi|XP_003122919.1| PREDICTED: ETS homologous factor-like isofor... 159 2e-39
Alignment gi|XP_003353956.1| PREDICTED: ETS homologous factor-like isofor... 159 2e-39
Alignment gi|NP_001230640.1| ETS-related transcription factor Elf-5 [Sus ... 119 3e-27
Alignment gi|XP_003135417.1| PREDICTED: ETS-related transcription factor ... 84 2e-16
Alignment gi|XP_003131046.2| PREDICTED: ETS-related transcription factor ... 82 8e-16
Alignment gi|XP_003135100.1| PREDICTED: ETS domain-containing protein Elk... 77 2e-14
Alignment gi|XP_003135099.1| PREDICTED: ETS domain-containing protein Elk... 77 2e-14
Alignment gi|XP_003357444.1| PREDICTED: ETS domain-containing protein Elk... 77 2e-14
Alignment gi|XP_003355727.1| PREDICTED: ETS domain-containing protein Elk... 77 2e-14
>ref|XP_003130654.2| PREDICTED: ETS-related transcription factor Elf-3-like [Sus scrofa].
Length = 303
Score = 479 bits (1233), Expect = e-135
Identities = 238/284 (83%), Positives = 239/284 (84%)
Frame = +2
Query: 344 QVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLGDQLYAQLWDLTS 523
+VLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLGDQLYAQLWDLTS
Sbjct: 2 KVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLGDQLYAQLWDLTS 61
Query: 524 SFPDELSWIMELLEKDSMTLQEPLGDQGPFDQGSPFAQEMLEDCRQPSPFYXXXXXXXXX 703
SFPDELSWIMELLEKDSMTLQEPLGDQGPFDQGSPFAQEMLEDCRQPSPFY
Sbjct: 62 SFPDELSWIMELLEKDSMTLQEPLGDQGPFDQGSPFAQEMLEDCRQPSPFYPGSFSAGAP 121
Query: 704 XXXXXDVSTAGTXXXXXXXXXXXXXXXXXLDAPDSKPFSGDGFPDYKKGDLXXXXXXXXX 883
DVSTAGT LDAPDSKPFSGDGFPDYKKGDL
Sbjct: 122 SPGSSDVSTAGTGASQSSPTSDSGGSDVDLDAPDSKPFSGDGFPDYKKGDLKHGKRKRGR 181
Query: 884 XXXLSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSE 1063
LSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENR EGVFKFLRSE
Sbjct: 182 PRKLSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRQEGVFKFLRSE 241
Query: 1064 AVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
AVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 242 AVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGRRLVYK 285
>ref|XP_003122919.1| PREDICTED: ETS homologous factor-like isoform 1 [Sus scrofa].
Length = 309
Score = 159 bits (403), Expect = 2e-39
Identities = 75/101 (74%), Positives = 85/101 (84%)
Frame = +2
Query: 893 LSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVA 1072
+ KE + KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 196 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 255
Query: 1073 QLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
QLWG+KK NSSMTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 256 QLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYK 296
Score = 49.7 bits (117), Expect = 3e-06
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 308 WSGEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLG 487
W PQ W+K QV +W+ + ++ ++ DAS I D++G LC + +E G G
Sbjct: 51 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 110
Query: 488 DQLYAQLWDL 517
LY+ L L
Sbjct: 111 QLLYSNLQHL 120
>ref|XP_003353956.1| PREDICTED: ETS homologous factor-like isoform 2 [Sus scrofa].
Length = 300
Score = 159 bits (403), Expect = 2e-39
Identities = 75/101 (74%), Positives = 85/101 (84%)
Frame = +2
Query: 893 LSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVA 1072
+ KE + KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 187 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 246
Query: 1073 QLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
QLWG+KK NSSMTYEKLSRAMRYYYKREILERVDG RLVYK
Sbjct: 247 QLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYK 287
Score = 49.7 bits (117), Expect = 3e-06
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +2
Query: 308 WSGEQPQLWSKAQVLDWISYQVEKHKYDASTIDLSRCDMDGAALCRCAPEELRLVFGPLG 487
W PQ W+K QV +W+ + ++ ++ DAS I D++G LC + +E G G
Sbjct: 42 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 101
Query: 488 DQLYAQLWDL 517
LY+ L L
Sbjct: 102 QLLYSNLQHL 111
>ref|NP_001230640.1| ETS-related transcription factor Elf-5 [Sus scrofa].
Length = 255
Score = 119 bits (298), Expect = 3e-27
Identities = 53/88 (60%), Positives = 75/88 (85%)
Frame = +2
Query: 932 SKHAPRGTHLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMT 1111
S+ + + +HLWEF+RD+L++PE N G+++WE+R +G+F+ ++SEA+A++WGQ+KKN MT
Sbjct: 156 SRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMT 215
Query: 1112 YEKLSRAMRYYYKREILERVDGPRLVYK 1195
YEKLSRA+RYYYK ILERVD RLVYK
Sbjct: 216 YEKLSRALRYYYKTGILERVD-RRLVYK 242
>ref|XP_003135417.1| PREDICTED: ETS-related transcription factor Elf-4 [Sus scrofa].
Length = 662
Score = 83.6 bits (205), Expect = 2e-16
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +2
Query: 929 KSKHAPRGT-HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSS 1105
KSK T +LWEF+ +L + +KW R +G+FK + S+AV++LWG++K
Sbjct: 199 KSKDGKGSTIYLWEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQKNKPD 258
Query: 1106 MTYEKLSRAMRYYYKREILERVDGPRLVYK 1195
M YE + RA+RYYY+R IL +V+G RLVY+
Sbjct: 259 MNYETMGRALRYYYQRGILAKVEGQRLVYQ 288
>ref|XP_003131046.2| PREDICTED: ETS-related transcription factor Elf-1 isoform 1 [Sus
scrofa].
Length = 503
Score = 81.6 bits (200), Expect = 8e-16
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +2
Query: 956 HLWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAM 1135
+LWEF+ +L + +KW R +G+FK + S+AV++LWG+ K M YE + RA+
Sbjct: 95 YLWEFLLALLQDKATCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRAL 154
Query: 1136 RYYYKREILERVDGPRLVYK 1195
RYYY+R IL +V+G RLVY+
Sbjct: 155 RYYYQRGILAKVEGQRLVYQ 174
>ref|XP_003135100.1| PREDICTED: ETS domain-containing protein Elk-1 isoform 2 [Sus
scrofa].
Length = 443
Score = 77.0 bits (188), Expect = 2e-14
Identities = 34/79 (43%), Positives = 53/79 (67%)
Frame = +2
Query: 959 LWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMR 1138
LW+F+ +L + N ++ W +R G FK + +E VA+LWG +K ++M Y+KLSRA+R
Sbjct: 7 LWQFLLQLL-REQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALR 65
Query: 1139 YYYKREILERVDGPRLVYK 1195
YYY + I+ +V G + VYK
Sbjct: 66 YYYDKNIIRKVSGQKFVYK 84
>ref|XP_003135099.1| PREDICTED: ETS domain-containing protein Elk-1 isoform 1 [Sus
scrofa].
Length = 443
Score = 77.0 bits (188), Expect = 2e-14
Identities = 34/79 (43%), Positives = 53/79 (67%)
Frame = +2
Query: 959 LWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMR 1138
LW+F+ +L + N ++ W +R G FK + +E VA+LWG +K ++M Y+KLSRA+R
Sbjct: 7 LWQFLLQLL-REQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALR 65
Query: 1139 YYYKREILERVDGPRLVYK 1195
YYY + I+ +V G + VYK
Sbjct: 66 YYYDKNIIRKVSGQKFVYK 84
>ref|XP_003357444.1| PREDICTED: ETS domain-containing protein Elk-4 [Sus scrofa].
Length = 432
Score = 77.0 bits (188), Expect = 2e-14
Identities = 35/79 (44%), Positives = 56/79 (70%)
Frame = +2
Query: 959 LWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMR 1138
LW+F+ +L P+ N+ ++ W + G FK L++E VA+LWG +K +M Y+KLSRA+R
Sbjct: 7 LWQFLLQLLKEPQ-NDHMICWTSN-NGEFKLLQAEEVARLWGIRKNKPNMNYDKLSRALR 64
Query: 1139 YYYKREILERVDGPRLVYK 1195
YYY + I+++V+G + VYK
Sbjct: 65 YYYVKNIIKKVNGQKFVYK 83
>ref|XP_003355727.1| PREDICTED: ETS domain-containing protein Elk-3 [Sus scrofa].
Length = 401
Score = 77.0 bits (188), Expect = 2e-14
Identities = 35/79 (44%), Positives = 58/79 (73%)
Frame = +2
Query: 959 LWEFIRDILINPELNEGLMKWENRPEGVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMR 1138
LW+F+ +L++ + +E L+ W + +G FK L++E VA+LWG +K ++M Y+KLSRA+R
Sbjct: 7 LWQFLLQLLLDQK-HEHLICWTSN-DGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALR 64
Query: 1139 YYYKREILERVDGPRLVYK 1195
YYY + I+++V G + VYK
Sbjct: 65 YYYDKNIIKKVIGQKFVYK 83
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,944,519
Number of extensions: 851042
Number of successful extensions: 5717
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5627
Number of HSP's successfully gapped: 25
Length of query: 398
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,829,335
Effective search space: 2622312495
Effective search space used: 2622312495
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003612
(1196 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 387 e-104
Sscrofa_Chr02 62 7e-07
>Sscrofa_Chr10
|| Length = 79102373
Score = 387 bits (195), Expect = e-104
Identities = 198/199 (99%)
Strand = Plus / Minus
Query: 941 gcccccagaggcacccacctgtgggagttcatccgtgatatcctcatcaacccggagctc 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28663495 gcccccagaggcacccacctgtgggagttcatccgtgatatcctcatcaacccggagctc 28663436
Query: 1001 aacgagggcctcatgaagtgggagaaccggccagaaggtgtcttcaagttcctgcgctcc 1060
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 28663435 aacgagggcctcatgaagtgggagaaccggcaagaaggtgtcttcaagttcctgcgctcc 28663376
Query: 1061 gaggccgtggcccagctgtggggtcagaagaagaagaacagcagcatgacctacgagaag 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28663375 gaggccgtggcccagctgtggggtcagaagaagaagaacagcagcatgacctacgagaag 28663316
Query: 1121 ctgagcagggccatgaggt 1139
|||||||||||||||||||
Sbjct: 28663315 ctgagcagggccatgaggt 28663297
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 342 cccaggttctggactggatcagctaccaagtggagaagcacaaatacgacgccagcacca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28665494 cccaggttctggactggatcagctaccaagtggagaagcacaaatacgacgccagcacca 28665435
Query: 402 tcgacctctcgcgctgtgacatggacggggccgcgctctgccgctgcgcccctgaggagc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28665434 tcgacctctcgcgctgtgacatggacggggccgcgctctgccgctgcgcccctgaggagc 28665375
Query: 462 tgcgcctggtcttcgggcccttgggggaccagctctatgctcagctatgggacctca 518
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28665374 tgcgcctggtcttcgggcccttgggggaccagctctatgctcagctatgggacctca 28665318
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 614 gaccagggaagccccttcgcccaagagatgctggaggactgcagacagcccagccccttc 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28665017 gaccagggaagccccttcgcccaagagatgctggaggactgcagacagcccagccccttc 28664958
Query: 674 tacccgggcagcttcagcgcgggagccccctccccaggcagctccgatgtctccaccgca 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28664957 tacccgggcagcttcagcgcgggagccccctccccaggcagctccgatgtctccaccgca 28664898
Query: 734 gg 735
||
Sbjct: 28664897 gg 28664896
Score = 234 bits (118), Expect = 9e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 824 gatggcttcccagactacaagaagggggatctgaagcacgggaagcggaaacggggccgc 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28664583 gatggcttcccagactacaagaagggggatctgaagcacgggaagcggaaacggggccgc 28664524
Query: 884 ccccgaaagctgagcaaagaatctcgggggtgtctggagggaacgaagagcaagcatg 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28664523 ccccgaaagctgagcaaagaatctcgggggtgtctggagggaacgaagagcaagcatg 28664466
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 519 cttccagctttcctgacgagctcagctggatcatggaacttctggagaaggacagcatga 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28665203 cttccagctttcctgacgagctcagctggatcatggaacttctggagaaggacagcatga 28665144
Query: 579 ccctccaggagcccctcggagaccagggcccctttg 614
||||||||||||||||||||||||||||||||||||
Sbjct: 28665143 ccctccaggagcccctcggagaccagggcccctttg 28665108
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 732 caggcactggagcctcccagagctcccccacctcagactccggtggaagcgacgtggacc 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28664774 caggcactggagcctcccagagctcccccacctcagactccggtggaagcgacgtggacc 28664715
Query: 792 tggacgcccctgacagcaagcccttctccgggg 824
|||||||||||||||||||||||||||||||||
Sbjct: 28664714 tggacgcccctgacagcaagcccttctccgggg 28664682
Score = 113 bits (57), Expect = 2e-22
Identities = 60/61 (98%)
Strand = Plus / Minus
Query: 1136 aggtactactacaagcgggagattctagagcgggtggacggtccgcggcttgtctacaaa 1195
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 28662823 aggtactactacaagcgggagattctagagcgggtggacggtcggcggcttgtctacaaa 28662764
Query: 1196 t 1196
|
Sbjct: 28662763 t 28662763
>Sscrofa_Chr02
|| Length = 162569375
Score = 61.9 bits (31), Expect = 7e-07
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 1061 gaggccgtggcccagctgtggggtcagaagaagaagaacagcagcatgacctacgagaag 1120
||||||||||| ||||| ||||| | ||||| || |||||||||||||||||||| ||
Sbjct: 28659417 gaggccgtggcacagctctgggggaaaaagaaaaacaacagcagcatgacctacgaaaaa 28659358
Query: 1121 ctgagcagggccatgaggt 1139
|| ||| | ||||||||||
Sbjct: 28659357 ctcagccgagccatgaggt 28659339
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,418,101
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 8
Length of query: 1196
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1175
Effective length of database: 2,808,413,156
Effective search space: 3299885458300
Effective search space used: 3299885458300
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)