Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003614
(1807 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019655.2| dynactin 5 [Bos taurus]. 329 6e-90
>ref|NP_001019655.2| dynactin 5 [Bos taurus].
Length = 182
Score = 329 bits (843), Expect = 6e-90
Identities = 161/175 (92%), Positives = 161/175 (92%)
Frame = +3
Query: 138 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 317
YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS
Sbjct: 8 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 67
Query: 318 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 497
VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK
Sbjct: 68 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 127
Query: 498 ILDNXXXXXXXXXXXXXXFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV 662
ILDN FSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV
Sbjct: 128 ILDNTVLPPETVVPPFTIFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV 182
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,726,515
Number of extensions: 1587203
Number of successful extensions: 4201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4184
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 494
Effective length of database: 14,107,870
Effective search space: 6969287780
Effective search space used: 6969287780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003614
(1807 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536931.1| PREDICTED: similar to Dynactin subunit 5 (Dynac... 329 6e-90
>ref|XP_536931.1| PREDICTED: similar to Dynactin subunit 5 (Dynactin subunit p25)
[Canis familiaris].
Length = 182
Score = 329 bits (843), Expect = 6e-90
Identities = 161/175 (92%), Positives = 161/175 (92%)
Frame = +3
Query: 138 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 317
YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS
Sbjct: 8 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 67
Query: 318 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 497
VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK
Sbjct: 68 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 127
Query: 498 ILDNXXXXXXXXXXXXXXFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV 662
ILDN FSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV
Sbjct: 128 ILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV 182
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,858,535
Number of extensions: 1535363
Number of successful extensions: 4403
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4391
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 493
Effective length of database: 15,240,880
Effective search space: 7513753840
Effective search space used: 7513753840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003614
(1807 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115875.1| dynactin subunit 5 isoform 1 [Homo sapiens]. 329 6e-90
Alignment gi|NP_001186672.1| dynactin subunit 5 isoform 3 [Homo sapiens]. 265 1e-70
Alignment gi|NP_001185940.1| dynactin subunit 5 isoform 2 [Homo sapiens]. 69 1e-11
>ref|NP_115875.1| dynactin subunit 5 isoform 1 [Homo sapiens].
Length = 182
Score = 329 bits (843), Expect = 6e-90
Identities = 161/175 (92%), Positives = 161/175 (92%)
Frame = +3
Query: 138 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 317
YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS
Sbjct: 8 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 67
Query: 318 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 497
VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK
Sbjct: 68 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 127
Query: 498 ILDNXXXXXXXXXXXXXXFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV 662
ILDN FSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV
Sbjct: 128 ILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV 182
>ref|NP_001186672.1| dynactin subunit 5 isoform 3 [Homo sapiens].
Length = 152
Score = 265 bits (676), Expect = 1e-70
Identities = 129/143 (90%), Positives = 129/143 (90%)
Frame = +3
Query: 138 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 317
YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS
Sbjct: 8 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 67
Query: 318 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 497
VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK
Sbjct: 68 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 127
Query: 498 ILDNXXXXXXXXXXXXXXFSGCP 566
ILDN FSGCP
Sbjct: 128 ILDNTVLPPETVVPPFTVFSGCP 150
>ref|NP_001185940.1| dynactin subunit 5 isoform 2 [Homo sapiens].
Length = 84
Score = 69.3 bits (168), Expect = 1e-11
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +3
Query: 138 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMN 248
YNKSEYIETASGNKVSRQSVLCGSQNIVLNGK V++
Sbjct: 8 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKNFVIS 44
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,827,420
Number of extensions: 1523790
Number of successful extensions: 4287
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4268
Number of HSP's successfully gapped: 3
Length of query: 602
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 494
Effective length of database: 14,737,052
Effective search space: 7280103688
Effective search space used: 7280103688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003614
(1807 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067621.3| dynactin subunit 5 [Mus musculus]. 328 6e-90
>ref|NP_067621.3| dynactin subunit 5 [Mus musculus].
Length = 182
Score = 328 bits (842), Expect = 6e-90
Identities = 160/175 (91%), Positives = 161/175 (92%)
Frame = +3
Query: 138 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 317
YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTI+MNDCIIRGDLANVRVGRHCVVKSRS
Sbjct: 8 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIIMNDCIIRGDLANVRVGRHCVVKSRS 67
Query: 318 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 497
VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK
Sbjct: 68 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCK 127
Query: 498 ILDNXXXXXXXXXXXXXXFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV 662
ILDN FSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV
Sbjct: 128 ILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKFLPLTQV 182
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,465,071
Number of extensions: 1292163
Number of successful extensions: 3598
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3576
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 495
Effective length of database: 12,403,707
Effective search space: 6139834965
Effective search space used: 6139834965
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003614
(1807 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130520.2| PREDICTED: dynactin subunit 5-like [Sus scro... 224 1e-58
Alignment gi|XP_003360846.1| PREDICTED: dynactin subunit 5-like, partial ... 109 6e-24
>ref|XP_003130520.2| PREDICTED: dynactin subunit 5-like [Sus scrofa].
Length = 151
Score = 224 bits (571), Expect = 1e-58
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = +3
Query: 138 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 317
YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS
Sbjct: 8 YNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRS 67
Query: 318 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVI 464
VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVI
Sbjct: 68 VIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVI 116
>ref|XP_003360846.1| PREDICTED: dynactin subunit 5-like, partial [Sus scrofa].
Length = 66
Score = 109 bits (272), Expect = 6e-24
Identities = 52/66 (78%), Positives = 52/66 (78%)
Frame = +3
Query: 465 GRRCVLKDCCKILDNXXXXXXXXXXXXXXFSGCPGLFSGELPECTQELMIDVTKSYYQKF 644
GRRCVLKDCCKILDN FSGCPGLFSGELPECTQELMIDVTKSYYQKF
Sbjct: 1 GRRCVLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQELMIDVTKSYYQKF 60
Query: 645 LPLTQV 662
LPLTQV
Sbjct: 61 LPLTQV 66
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,602,412
Number of extensions: 1153792
Number of successful extensions: 2701
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2696
Number of HSP's successfully gapped: 2
Length of query: 602
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 497
Effective length of database: 8,729,747
Effective search space: 4338684259
Effective search space used: 4338684259
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003614
(1807 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892917.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1774 0.0
Sscrofa_Chr10 325 5e-86
>gb|GL892917.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1734
Length = 41310
Score = 1774 bits (895), Expect = 0.0
Identities = 913/919 (99%)
Strand = Plus / Plus
Query: 809 ctttagaatttctcaatccttccaggctctcagctcttaagactttaataacagaacgtc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4383 ctttagaatttctcaatccttccaggctctcagctcttaagactttaataacagaacgtc 4442
Query: 869 tggaagagttgtctccaaatgctgtgcttaaaccctgtctgttagcagtcacttggtacc 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4443 tggaagagttgtctccaaatgctgtgcttaaaccctgtctgttagcagtcacttggtacc 4502
Query: 929 atacatggaacacagaatcatctgttcccaacactcccgcccccatggatggctgggtgg 988
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4503 atacgtggaacacagaatcatctgttcccaacactcccgcccccatggatggctgggtgg 4562
Query: 989 agcagggccctccgtcccaacgtggaggtggtgatgctcatgcgctgcccgtggccacag 1048
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 4563 agcagggccctccgtcccaacgtggaggtggtgatgctcacgtgctgcccgtggccacag 4622
Query: 1049 ccaccacagtgcccgccactcacagggatcccgctcagctgccgttgccgctcatacctt 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4623 ccaccacagtgcccgccactcacagggatcccgctcagctgccgttgccgctcatacctt 4682
Query: 1109 tggccagtcgccacagctgctcacagtcttggaaaaaagtttgtgacttttcagagtcca 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4683 tggccagtcgccacagctgctcacagtcttggaaaaaagtttgtgacttttcagagtcca 4742
Query: 1169 gatcctcgtgggctactaaaactcgacggaaaggtggttggtatttctcttctttgcaga 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4743 gatcctcgtgggctactaaaactcgacggaaaggtggttggtatttctcttctttgcaga 4802
Query: 1229 atgagctgaactgtcattttaacccagggtgactgactaataaaagacttcctagcattc 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4803 atgagctgaactgtcattttaacccagggtgactgactaataaaagacttcctagcattc 4862
Query: 1289 tagtctagggcctttggctttcactaaaagggggcctctcggcacccagattttattttt 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4863 tagtctagggcctttggctttcactaaaagggggcctctcggcacccagattttattttt 4922
Query: 1349 gcaaagtccaagttttgagtctcgcacgtggatggattcgcctagcagccattctgtgcc 1408
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4923 gcaaagtccaaggtttgagtctcgcacgtggatggattcgcctagcagccattctgtgcc 4982
Query: 1409 tgcctcacaatatttgggggcagtagtatatgccttgtttcaccggcggtgtagcatttg 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4983 tgcctcacaatatttgggggcagtagtatatgccttgtttcaccggcggtgtagcatttg 5042
Query: 1469 tgacacttgctccctggcctagaaccattcagcccaccctgtatttgccataaacctcac 1528
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5043 tgacacttgctccctggcctagaaccattcagcccaccctgtgtttgccataaacctcac 5102
Query: 1529 agttcagaccaaattatctgtccttgggcccaatctcatatttacatgggggcctcttaa 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5103 agttcagaccaaattatctgtccttgggcccaatctcatatttacatgggggcctcttaa 5162
Query: 1589 aattcttctgtgggcatagagcctcaaggagtaaaagaagttgccagtgctggtcttagc 1648
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5163 aattcttctgtgggcatagagcctcaaggagtaaaagaagtttccagtgctggtcttagc 5222
Query: 1649 atcttctgggtaatggcacaacctttccccttctgctctggcctcttagtttaggaggaa 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5223 atcttctgggtaatggcacaacctttccccttctgctctggcctcttagtttaggaggaa 5282
Query: 1709 gacttagaagtgaaggcct 1727
|||||||||||||||||||
Sbjct: 5283 gacttagaagtgaaggcct 5301
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 563 cccaggactcttctcaggggagctcccagaatgtacccaggagctgatgatcgacgtcac 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4062 cccaggactcttctcaggggagctcccagaatgtacccaggagctgatgatcgacgtcac 4121
Query: 623 caagagctactaccagaagtttttgcccttgacacaggtctaatgtctctgcctgtgtct 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4122 caagagctactaccagaagtttttgcccttgacacaggtctaatgtctctgcctgtgtct 4181
Query: 683 tgaattcgcttgagctctaa 702
||||||||||||||||||||
Sbjct: 4182 tgaattcgcttgagctctaa 4201
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 465 gggcgccggtgtgtgttgaaagactgttgcaaaattcttgacaacacagtattaccccca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gggcgccggtgtgtgttgaaagactgttgcaaaattcttgacaacacagtattaccccca 539
Query: 525 gaaaccgtggtcccaccgttcaccgtcttctcaggctgcccagg 568
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaaaccgtggtcccaccgttcaccgtcttctcaggctgcccagg 583
Score = 101 bits (51), Expect = 1e-18
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 726 gcccgtcagcatctacaaagagctcttgtgtctttgacacctcccaccctc 776
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4302 gcccgtcagcatctacaaagagctcttgtgtctttgacacctcccaccctc 4352
>Sscrofa_Chr10
|| Length = 79102373
Score = 325 bits (164), Expect = 5e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 2 acaggctgcccagagcggaagtgaaggagcagccggaagtagccggaatcccaggctgac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17210 acaggctgcccagagcggaagtgaaggagcagccggaagtagccggaatcccaggctgac 17151
Query: 62 tgaccggcgaacggtctttgacaggagccggagctgcgcgggggagttggcggccatgga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17150 tgaccggcgaacggtctttgacaggagccggagctgcgcgggggagttggcggccatgga 17091
Query: 122 gttgggcgagctgctctacaacaagtctgagtacatcgagacgg 165
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17090 gttgggcgagctgctctacaacaagtctgagtacatcgagacgg 17047
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 232 agaccattgtgatgaatgactgtattatccgaggggatctggcaaatgtcagagttggac 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8891 agaccattgtgatgaatgactgtattatccgaggggatctggcaaatgtcagagttggac 8832
Query: 292 gtcattgtgtcgtgaaaagtcggagtgtcataaggccaccattcaagaaattcagcaaag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8831 gtcattgtgtcgtgaaaagtcggagtgtcataaggccaccattcaagaaattcagcaaag 8772
Query: 352 g 352
|
Sbjct: 8771 g 8771
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 352 gtgttgcattttttcctttacacattggggaccatgtctttattgaggaagactgtgtgg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4670 gtgttgcattttttcctttacacattggggaccatgtctttattgaggaagactgtgtgg 4611
Query: 412 tcaacgcagctcagatcggctcttatgttcacgttggcaagaactgtgtgattg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4610 tcaacgcagctcagatcggctcttatgttcacgttggcaagaactgtgtgattg 4557
Score = 139 bits (70), Expect = 6e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 164 ggcatctgggaacaaagttagtcgccagtctgtgttgtgtggaagtcagaacatcgttct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16285 ggcatctgggaacaaagttagtcgccagtctgtgttgtgtggaagtcagaacatcgttct 16226
Query: 224 taatggcaag 233
||||||||||
Sbjct: 16225 taatggcaag 16216
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,491,415
Number of extensions: 325
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 8
Length of query: 1807
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1785
Effective length of database: 2,808,408,574
Effective search space: 5013009304590
Effective search space used: 5013009304590
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)