Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003620
(1538 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002696180.1| PREDICTED: beta-1,3-N-acetylglucosaminyltran... 472 e-133
Alignment gi|XP_610753.3| PREDICTED: beta-1,3-N-acetylglucosaminyltransfe... 472 e-133
Alignment gi|NP_001039687.1| beta-1,3-N-acetylglucosaminyltransferase lun... 364 e-100
Alignment gi|NP_001094521.1| beta-1,3-N-acetylglucosaminyltransferase man... 313 2e-85
Alignment gi|XP_002691805.1| PREDICTED: beta 1,3-galactosyltransferase-li... 53 8e-07
Alignment gi|XP_586487.4| PREDICTED: beta 1,3-galactosyltransferase-like ... 53 8e-07
>ref|XP_002696180.1| PREDICTED: beta-1,3-N-acetylglucosaminyltransferase radical
fringe-like [Bos taurus].
Length = 271
Score = 472 bits (1215), Expect = e-133
Identities = 221/240 (92%), Positives = 230/240 (95%)
Frame = +2
Query: 71 QTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCCKMAVEYDKFIESGRKWFCHVDDD 250
QTFIFTDGDDPELQLQGG HV+NTNCSAVHTRQALCCKM+VEYDKFIESGRKWFCHVDDD
Sbjct: 29 QTFIFTDGDDPELQLQGGGHVINTNCSAVHTRQALCCKMSVEYDKFIESGRKWFCHVDDD 88
Query: 251 NYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGGTVTSVKFWFATGGAGFCL 430
NYVNP GLL LLS+FSPSQD+YLGRPSLDHPIEATER+QGGGTVT+VKFWFATGGAGFCL
Sbjct: 89 NYVNPKGLLQLLSTFSPSQDIYLGRPSLDHPIEATERIQGGGTVTTVKFWFATGGAGFCL 148
Query: 431 SRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLLRSPLFHSHLENLPRL 610
SRGLALKMSPWASLG FMSTAERVRLPDDCTVGYIVEGLLGARLL S LFHSHLENL +L
Sbjct: 149 SRGLALKMSPWASLGGFMSTAERVRLPDDCTVGYIVEGLLGARLLHSSLFHSHLENLQKL 208
Query: 611 PPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTRFQSVHCLLYPDTDWCPGQKQSDL 790
PDTLLQQVTLSYGGPENP NVVNVAGGFSLQQDPTRF+S+HCLLYPDTDWCP QKQSDL
Sbjct: 209 SPDTLLQQVTLSYGGPENPQNVVNVAGGFSLQQDPTRFKSIHCLLYPDTDWCPVQKQSDL 268
>ref|XP_610753.3| PREDICTED: beta-1,3-N-acetylglucosaminyltransferase radical
fringe-like [Bos taurus].
Length = 283
Score = 472 bits (1215), Expect = e-133
Identities = 221/240 (92%), Positives = 230/240 (95%)
Frame = +2
Query: 71 QTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCCKMAVEYDKFIESGRKWFCHVDDD 250
QTFIFTDGDDPELQLQGG HV+NTNCSAVHTRQALCCKM+VEYDKFIESGRKWFCHVDDD
Sbjct: 41 QTFIFTDGDDPELQLQGGGHVINTNCSAVHTRQALCCKMSVEYDKFIESGRKWFCHVDDD 100
Query: 251 NYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGGTVTSVKFWFATGGAGFCL 430
NYVNP GLL LLS+FSPSQD+YLGRPSLDHPIEATER+QGGGTVT+VKFWFATGGAGFCL
Sbjct: 101 NYVNPKGLLQLLSTFSPSQDIYLGRPSLDHPIEATERIQGGGTVTTVKFWFATGGAGFCL 160
Query: 431 SRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLLRSPLFHSHLENLPRL 610
SRGLALKMSPWASLG FMSTAERVRLPDDCTVGYIVEGLLGARLL S LFHSHLENL +L
Sbjct: 161 SRGLALKMSPWASLGGFMSTAERVRLPDDCTVGYIVEGLLGARLLHSSLFHSHLENLQKL 220
Query: 611 PPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTRFQSVHCLLYPDTDWCPGQKQSDL 790
PDTLLQQVTLSYGGPENP NVVNVAGGFSLQQDPTRF+S+HCLLYPDTDWCP QKQSDL
Sbjct: 221 SPDTLLQQVTLSYGGPENPQNVVNVAGGFSLQQDPTRFKSIHCLLYPDTDWCPVQKQSDL 280
>ref|NP_001039687.1| beta-1,3-N-acetylglucosaminyltransferase lunatic fringe [Bos
taurus].
Length = 380
Score = 364 bits (934), Expect = e-100
Identities = 179/256 (69%), Positives = 202/256 (78%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TT+K H RL LLL TWISR + TFIFTDG+D L + G HVVNTNCSA H+RQAL C
Sbjct: 122 TTKKFHRARLDLLLETWISRHEEMTFIFTDGEDEALARRTG-HVVNTNCSAAHSRQALSC 180
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMAVEYD+FIESGRKWFCHVDDDNYVN LL LL S+ +QDVYLG+PSLD PI+ATER
Sbjct: 181 KMAVEYDRFIESGRKWFCHVDDDNYVNVRALLRLLGSYPHTQDVYLGKPSLDRPIQATER 240
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
V V V FWFATGGAGFC+SRGLALKMSPWAS G FMSTAER+RLPDDCT+GYIVE
Sbjct: 241 VSEN-KVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMSTAERIRLPDDCTIGYIVE 299
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LLG L+R LFHSHLENL ++P L +QVTLSYG EN N V++ G FS++ DP+R
Sbjct: 300 ALLGVPLVRCGLFHSHLENLQQVPASELHEQVTLSYGMFENKRNSVHIKGPFSVEADPSR 359
Query: 722 FQSVHCLLYPDTDWCP 769
F+SVHC LYPDT WCP
Sbjct: 360 FRSVHCHLYPDTSWCP 375
>ref|NP_001094521.1| beta-1,3-N-acetylglucosaminyltransferase manic fringe [Bos taurus].
Length = 320
Score = 313 bits (803), Expect = 2e-85
Identities = 155/256 (60%), Positives = 184/256 (71%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TT+ H RL LLL TW+SR R+QTFIFTD D LQ + GSH+V TNCSA H+ AL C
Sbjct: 62 TTQAFHHSRLELLLNTWVSRTREQTFIFTDSPDEGLQERLGSHLVVTNCSAEHSHPALSC 121
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMA E+D F+ SG +WFCHVDDDNY+NP LL LL +F ++DVY+GRPSL+ PI A+E
Sbjct: 122 KMAAEFDAFLASGLRWFCHVDDDNYLNPRALLKLLKTFPQTRDVYVGRPSLNRPIHASEP 181
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
Q V+FWFATGGAGFC++R LALKM+PWAS FM T+ +RLPDDCTVGYIVE
Sbjct: 182 -QPHNRTKLVQFWFATGGAGFCINRKLALKMAPWASGSHFMDTSALIRLPDDCTVGYIVE 240
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LG L PLFHSHLE L L L +QVTLSYG E NV+ + G FS ++DP+R
Sbjct: 241 CKLGGHLQSCPLFHSHLETLQLLEAAQLPEQVTLSYGVFEGKLNVIKLHGPFSPEEDPSR 300
Query: 722 FQSVHCLLYPDTDWCP 769
F S+HCLLYPDT WCP
Sbjct: 301 FHSLHCLLYPDTPWCP 316
>ref|XP_002691805.1| PREDICTED: beta 1,3-galactosyltransferase-like [Bos taurus].
Length = 482
Score = 52.8 bits (125), Expect = 8e-07
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 5/221 (2%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFI--FTDGDDPELQLQGGSHVVNTNCSAVHTRQAL 175
T +K HG R+ ++ +TW +A + + D P + L +T +
Sbjct: 259 TCKKFHGDRIPIVKQTWAGQAGHLEYYSDYADNSIPTVDL-----------GIPNTDRGH 307
Query: 176 CCKMAVEYDKFIESGRK---WFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPI 346
C K ++F+ W VDDD ++ L HLLS + + V+LG
Sbjct: 308 CGKTFAILERFLNHSHDKIPWLVIVDDDTLISISRLRHLLSCYDTREPVFLG-------- 359
Query: 347 EATERVQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTV 526
ER G G T + + TGG G S+ A++ + + + A PDD +
Sbjct: 360 ---ER-YGYGLGTG-GYSYVTGGGGMVFSKE-AIRRLLASKCRCYSNDA-----PDDMVL 408
Query: 527 GYIVEGLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSY 649
G G LG + SPLFH P D L QV +S+
Sbjct: 409 GMCFSG-LGIPVTHSPLFHQ--ARPVDYPKDYLSHQVPVSF 446
>ref|XP_586487.4| PREDICTED: beta 1,3-galactosyltransferase-like [Bos taurus].
Length = 482
Score = 52.8 bits (125), Expect = 8e-07
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 5/221 (2%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFI--FTDGDDPELQLQGGSHVVNTNCSAVHTRQAL 175
T +K HG R+ ++ +TW +A + + D P + L +T +
Sbjct: 259 TCKKFHGDRIPIVKQTWAGQAGHLEYYSDYADNSIPTVDL-----------GIPNTDRGH 307
Query: 176 CCKMAVEYDKFIESGRK---WFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPI 346
C K ++F+ W VDDD ++ L HLLS + + V+LG
Sbjct: 308 CGKTFAILERFLNHSHDKIPWLVIVDDDTLISISRLRHLLSCYDTREPVFLG-------- 359
Query: 347 EATERVQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTV 526
ER G G T + + TGG G S+ A++ + + + A PDD +
Sbjct: 360 ---ER-YGYGLGTG-GYSYVTGGGGMVFSKE-AIRRLLASKCRCYSNDA-----PDDMVL 408
Query: 527 GYIVEGLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSY 649
G G LG + SPLFH P D L QV +S+
Sbjct: 409 GMCFSG-LGIPVTHSPLFHQ--ARPVDYPKDYLSHQVPVSF 446
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,721,131
Number of extensions: 2287032
Number of successful extensions: 17232
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 16834
Number of HSP's successfully gapped: 6
Length of query: 512
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 405
Effective length of database: 14,140,958
Effective search space: 5727087990
Effective search space used: 5727087990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003620
(1538 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540495.2| PREDICTED: similar to Beta-1,3-N-acetylglucosam... 510 e-144
Alignment gi|XP_547009.2| PREDICTED: similar to lunatic fringe homolog [C... 331 1e-90
Alignment gi|XP_852869.1| PREDICTED: similar to Beta-1,3-N-acetylglucosam... 312 5e-85
Alignment gi|XP_543143.2| PREDICTED: similar to beta 3-glycosyltransferas... 57 4e-08
>ref|XP_540495.2| PREDICTED: similar to Beta-1,3-N-acetylglucosaminyltransferase
radical fringe (O-fucosylpeptide
3-beta-N-acetylglucosaminyltransferase) [Canis
familiaris].
Length = 292
Score = 510 bits (1314), Expect = e-144
Identities = 240/261 (91%), Positives = 250/261 (95%)
Frame = +2
Query: 8 RKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCCKM 187
+KNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGG HV+NTNCSAVHTRQALCCKM
Sbjct: 29 QKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGGHVINTNCSAVHTRQALCCKM 88
Query: 188 AVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQ 367
+VEYDKFIESGRKWFCHVDDDNYVNP GLL LL++FSPSQDVYLGRPSLDHPIEA ERVQ
Sbjct: 89 SVEYDKFIESGRKWFCHVDDDNYVNPKGLLQLLATFSPSQDVYLGRPSLDHPIEAAERVQ 148
Query: 368 GGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGL 547
GGGTVT+VKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGL
Sbjct: 149 GGGTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGL 208
Query: 548 LGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTRFQ 727
LGARLL S LFHSHLENL RLPPD +L+QVTLSYGGP+NPHNVVNV GGFSLQQDPTRF+
Sbjct: 209 LGARLLPSSLFHSHLENLQRLPPDAVLRQVTLSYGGPDNPHNVVNVMGGFSLQQDPTRFK 268
Query: 728 SVHCLLYPDTDWCPGQKQSDL 790
SVHCLLYPDTDWCP KQSDL
Sbjct: 269 SVHCLLYPDTDWCPVHKQSDL 289
>ref|XP_547009.2| PREDICTED: similar to lunatic fringe homolog [Canis familiaris].
Length = 532
Score = 331 bits (848), Expect = 1e-90
Identities = 163/245 (66%), Positives = 187/245 (76%), Gaps = 13/245 (5%)
Frame = +2
Query: 74 TFIFTDGDDPELQLQGGS-------------HVVNTNCSAVHTRQALCCKMAVEYDKFIE 214
TFIFTDG+D L + S +VVNTNCSA H+RQAL CKMAVEYD FIE
Sbjct: 284 TFIFTDGEDEALARRTASSNLLTAPLPLFTGNVVNTNCSAAHSRQALSCKMAVEYDHFIE 343
Query: 215 SGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGGTVTSVK 394
SGRKWFCHVDDDNYVN LL LL+S+ +QDVY+G+PSLD PI+ATERV V V
Sbjct: 344 SGRKWFCHVDDDNYVNVRALLRLLASYPHTQDVYIGKPSLDRPIQATERVSEN-KVRPVH 402
Query: 395 FWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLLRSP 574
FWFATGGAGFC+SRGLALKMSPWAS G FMSTAER+RLPDDCTVGYIVE LLG L+RS
Sbjct: 403 FWFATGGAGFCISRGLALKMSPWASRGHFMSTAERIRLPDDCTVGYIVEALLGVPLIRSG 462
Query: 575 LFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTRFQSVHCLLYPD 754
LFHSHLENL ++P L +QVTLSYG EN N +++ G FS++ DP+RF+S+HC LYPD
Sbjct: 463 LFHSHLENLQQVPASELREQVTLSYGMFENKRNAIHMKGPFSVEADPSRFRSIHCHLYPD 522
Query: 755 TDWCP 769
T WCP
Sbjct: 523 TPWCP 527
>ref|XP_852869.1| PREDICTED: similar to Beta-1,3-N-acetylglucosaminyltransferase
manic fringe (O-fucosylpeptide
3-beta-N-acetylglucosaminyltransferase) [Canis
familiaris].
Length = 315
Score = 312 bits (800), Expect = 5e-85
Identities = 155/256 (60%), Positives = 185/256 (72%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TTR H RL LLL TW+SR R+QTF+FTD D LQ + GSH++ TNCSA H+ AL C
Sbjct: 60 TTRTFHRSRLELLLDTWVSRTREQTFVFTDSPDEGLQERLGSHLMVTNCSAEHSHPALSC 119
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMA E+D F+ SG +WFCHVDDDNYVNP LL LL +F ++DVYLGRPSL+ PI A+E
Sbjct: 120 KMAAEFDTFLASGLRWFCHVDDDNYVNPRALLRLLKTFPQTRDVYLGRPSLNRPIRASEP 179
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
T V+FWFATGGAGFC++R LALKM+PWAS F+ T+ +RLPDDCTVGYIVE
Sbjct: 180 RPHNRT-RQVQFWFATGGAGFCINRKLALKMAPWASGSRFVETSALIRLPDDCTVGYIVE 238
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
L L SPLFHSHLE L L L +QVTLSYG E NV+ + G FS ++DP+R
Sbjct: 239 CKLRGHLQPSPLFHSHLETLQLLGAAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSR 298
Query: 722 FQSVHCLLYPDTDWCP 769
F+S+HCLLYPDT WCP
Sbjct: 299 FRSLHCLLYPDTPWCP 314
>ref|XP_543143.2| PREDICTED: similar to beta 3-glycosyltransferase-like [Canis
familiaris].
Length = 571
Score = 57.4 bits (137), Expect = 4e-08
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 3/219 (1%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
T +K HG R+ ++ +TW A Q + I D E S + + +T + C
Sbjct: 348 TCKKFHGDRIPIVKQTW---AGQASLIEYYSDHAE------SSIPTVDLGIPNTDRGHCG 398
Query: 182 KMAVEYDKFIESGRK---WFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEA 352
K +KF+ W VDDD ++ L HLLS + S+ V+LG
Sbjct: 399 KTFAILEKFLNHSHDKIAWLVIVDDDTLISISRLQHLLSCYDSSEPVFLG---------- 448
Query: 353 TERVQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGY 532
ER G G T + + TGG G SR A++ + + + A PDD +G
Sbjct: 449 -ER-YGYGLGTG-GYSYITGGGGMVFSRE-AIRRLLASKCRCYSNDA-----PDDMVLGM 499
Query: 533 IVEGLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSY 649
G LG + SPLFH P D L QV +S+
Sbjct: 500 CFSG-LGIPVTHSPLFHQ--ARPVDYPRDYLSHQVPISF 535
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,551,324
Number of extensions: 2355127
Number of successful extensions: 18041
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 17572
Number of HSP's successfully gapped: 4
Length of query: 512
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 405
Effective length of database: 15,307,552
Effective search space: 6199558560
Effective search space used: 6199558560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003620
(1538 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002908.1| beta-1,3-N-acetylglucosaminyltransferase radica... 506 e-143
Alignment gi|NP_001035257.1| beta-1,3-N-acetylglucosaminyltransferase lun... 355 8e-98
Alignment gi|NP_001159827.1| beta-1,3-N-acetylglucosaminyltransferase lun... 333 3e-91
Alignment gi|NP_002295.1| beta-1,3-N-acetylglucosaminyltransferase lunati... 328 6e-90
Alignment gi|NP_001035258.1| beta-1,3-N-acetylglucosaminyltransferase lun... 323 3e-88
Alignment gi|NP_002396.2| beta-1,3-N-acetylglucosaminyltransferase manic ... 316 4e-86
Alignment gi|NP_001159815.1| beta-1,3-N-acetylglucosaminyltransferase man... 288 7e-78
Alignment gi|NP_919299.3| beta-1,3-glucosyltransferase [Homo sapiens]. 55 2e-07
>ref|NP_002908.1| beta-1,3-N-acetylglucosaminyltransferase radical fringe [Homo
sapiens].
Length = 331
Score = 506 bits (1304), Expect = e-143
Identities = 240/260 (92%), Positives = 248/260 (95%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TTRKNHGPRL LLLRTWISRARQQTFIFTDGDDPEL+LQGG V+NTNCSAV TRQALCC
Sbjct: 66 TTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQALCC 125
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KM+VEYDKFIESGRKWFCHVDDDNYVN LLHLLSSFSPSQDVYLGRPSLDHPIEATER
Sbjct: 126 KMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEATER 185
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
VQGG TVT+VKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAE+VRLPDDCTVGYIVE
Sbjct: 186 VQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTVGYIVE 245
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
GLLGARLL SPLFHSHLENL RLPPDTLLQQVTLS+GGPENPHNVVNVAGGFSL QDPTR
Sbjct: 246 GLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLHQDPTR 305
Query: 722 FQSVHCLLYPDTDWCPGQKQ 781
F+S+HCLLYPDTDWCP QKQ
Sbjct: 306 FKSIHCLLYPDTDWCPRQKQ 325
>ref|NP_001035257.1| beta-1,3-N-acetylglucosaminyltransferase lunatic fringe isoform a
preproprotein [Homo sapiens].
Length = 379
Score = 355 bits (910), Expect = 8e-98
Identities = 174/256 (67%), Positives = 202/256 (78%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TT+K H RL LLL TWISR ++ TFIFTDG+D L G+ VV TNCSA H+RQAL C
Sbjct: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGN-VVITNCSAAHSRQALSC 179
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMAVEYD+FIESGRKWFCHVDDDNYVN LL LL+S+ ++DVY+G+PSLD PI+A ER
Sbjct: 180 KMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMER 239
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
V V V FWFATGGAGFC+SRGLALKMSPWAS G FM+TAER+RLPDDCT+GYIVE
Sbjct: 240 VSEN-KVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVE 298
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LLG L+RS LFHSHLENL ++P L +QVTLSYG EN N V+V G FS++ DP+R
Sbjct: 299 ALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSR 358
Query: 722 FQSVHCLLYPDTDWCP 769
F+S+HC LYPDT WCP
Sbjct: 359 FRSIHCHLYPDTPWCP 374
>ref|NP_001159827.1| beta-1,3-N-acetylglucosaminyltransferase lunatic fringe isoform c
[Homo sapiens].
Length = 308
Score = 333 bits (854), Expect = 3e-91
Identities = 164/243 (67%), Positives = 191/243 (78%)
Frame = +2
Query: 41 LRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCCKMAVEYDKFIESG 220
LR++ QQTFIFTDG+D L G+ VV TNCSA H+RQAL CKMAVEYD+FIESG
Sbjct: 63 LRSYGGGLSQQTFIFTDGEDEALARHTGN-VVITNCSAAHSRQALSCKMAVEYDRFIESG 121
Query: 221 RKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGGTVTSVKFW 400
RKWFCHVDDDNYVN LL LL+S+ ++DVY+G+PSLD PI+A ERV V V FW
Sbjct: 122 RKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSEN-KVRPVHFW 180
Query: 401 FATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLLRSPLF 580
FATGGAGFC+SRGLALKMSPWAS G FM+TAER+RLPDDCT+GYIVE LLG L+RS LF
Sbjct: 181 FATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGVPLIRSGLF 240
Query: 581 HSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTRFQSVHCLLYPDTD 760
HSHLENL ++P L +QVTLSYG EN N V+V G FS++ DP+RF+S+HC LYPDT
Sbjct: 241 HSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRFRSIHCHLYPDTP 300
Query: 761 WCP 769
WCP
Sbjct: 301 WCP 303
>ref|NP_002295.1| beta-1,3-N-acetylglucosaminyltransferase lunatic fringe isoform d
[Homo sapiens].
Length = 250
Score = 328 bits (842), Expect = 6e-90
Identities = 160/233 (68%), Positives = 186/233 (79%)
Frame = +2
Query: 71 QTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCCKMAVEYDKFIESGRKWFCHVDDD 250
+TFIFTDG+D L G+ VV TNCSA H+RQAL CKMAVEYD+FIESGRKWFCHVDDD
Sbjct: 15 ETFIFTDGEDEALARHTGN-VVITNCSAAHSRQALSCKMAVEYDRFIESGRKWFCHVDDD 73
Query: 251 NYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGGTVTSVKFWFATGGAGFCL 430
NYVN LL LL+S+ ++DVY+G+PSLD PI+A ERV V V FWFATGGAGFC+
Sbjct: 74 NYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSEN-KVRPVHFWFATGGAGFCI 132
Query: 431 SRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLLRSPLFHSHLENLPRL 610
SRGLALKMSPWAS G FM+TAER+RLPDDCT+GYIVE LLG L+RS LFHSHLENL ++
Sbjct: 133 SRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQV 192
Query: 611 PPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTRFQSVHCLLYPDTDWCP 769
P L +QVTLSYG EN N V+V G FS++ DP+RF+S+HC LYPDT WCP
Sbjct: 193 PTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRFRSIHCHLYPDTPWCP 245
>ref|NP_001035258.1| beta-1,3-N-acetylglucosaminyltransferase lunatic fringe isoform b
preproprotein [Homo sapiens].
Length = 361
Score = 323 bits (828), Expect = 3e-88
Identities = 162/241 (67%), Positives = 189/241 (78%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TT+K H RL LLL TWISR ++ TFIFTDG+D L G+ VV TNCSA H+RQAL C
Sbjct: 121 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGN-VVITNCSAAHSRQALSC 179
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMAVEYD+FIESGRKWFCHVDDDNYVN LL LL+S+ ++DVY+G+PSLD PI+A ER
Sbjct: 180 KMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMER 239
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
V V V FWFATGGAGFC+SRGLALKMSPWAS G FM+TAER+RLPDDCT+GYIVE
Sbjct: 240 VSEN-KVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVE 298
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LLG L+RS LFHSHLENL ++P L +QVTLSYG EN N V+V G FS++ DP+R
Sbjct: 299 ALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSR 358
Query: 722 F 724
+
Sbjct: 359 W 359
>ref|NP_002396.2| beta-1,3-N-acetylglucosaminyltransferase manic fringe isoform 1
[Homo sapiens].
Length = 321
Score = 316 bits (809), Expect = 4e-86
Identities = 156/256 (60%), Positives = 187/256 (73%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TTR H RL LLL TW+SR R+QTF+FTD D LQ + GSH+V TNCSA H+ AL C
Sbjct: 62 TTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAEHSHPALSC 121
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMA E+D F+ SG +WFCHVDDDNYVNP LL LL +F ++DVY+GRPSL+ PI A+E
Sbjct: 122 KMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEP 181
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
Q V+FWFATGGAGFC++R LALKM+PWAS FM T+ +RLPDDCT+GYI+E
Sbjct: 182 -QPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIE 240
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LG RL SPLFHSHLE L L L +QVTLSYG E NV+ + G FS ++DP+R
Sbjct: 241 CKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSR 300
Query: 722 FQSVHCLLYPDTDWCP 769
F+S+HCLLYPDT WCP
Sbjct: 301 FRSLHCLLYPDTPWCP 316
>ref|NP_001159815.1| beta-1,3-N-acetylglucosaminyltransferase manic fringe isoform 2
[Homo sapiens].
Length = 307
Score = 288 bits (738), Expect = 7e-78
Identities = 147/256 (57%), Positives = 176/256 (68%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TTR H RL LLL TW+SR R+Q SH+V TNCSA H+ AL C
Sbjct: 62 TTRAFHRLRLELLLDTWVSRTREQVT--------------RSHLVVTNCSAEHSHPALSC 107
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMA E+D F+ SG +WFCHVDDDNYVNP LL LL +F ++DVY+GRPSL+ PI A+E
Sbjct: 108 KMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEP 167
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
Q V+FWFATGGAGFC++R LALKM+PWAS FM T+ +RLPDDCT+GYI+E
Sbjct: 168 -QPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIE 226
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LG RL SPLFHSHLE L L L +QVTLSYG E NV+ + G FS ++DP+R
Sbjct: 227 CKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSR 286
Query: 722 FQSVHCLLYPDTDWCP 769
F+S+HCLLYPDT WCP
Sbjct: 287 FRSLHCLLYPDTPWCP 302
>ref|NP_919299.3| beta-1,3-glucosyltransferase [Homo sapiens].
Length = 498
Score = 54.7 bits (130), Expect = 2e-07
Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 5/221 (2%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFI--FTDGDDPELQLQGGSHVVNTNCSAVHTRQAL 175
T +K HG R+ ++ +TW S+A + +T+ P + L +T +
Sbjct: 275 TCKKFHGDRIPIVKQTWESQASLIEYYSDYTENSIPTVDL-----------GIPNTDRGH 323
Query: 176 CCKMAVEYDKFIESGRK---WFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPI 346
C K ++F+ + W VDDD ++ L HLLS + + V+LG
Sbjct: 324 CGKTFAILERFLNRSQDKTAWLVIVDDDTLISISRLQHLLSCYDSGEPVFLG-------- 375
Query: 347 EATERVQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTV 526
ER G G T + + TGG G SR A++ + + + A PDD +
Sbjct: 376 ---ER-YGYGLGTG-GYSYITGGGGMVFSRE-AVRRLLASKCRCYSNDA-----PDDMVL 424
Query: 527 GYIVEGLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSY 649
G G LG + SPLFH P D L QV +S+
Sbjct: 425 GMCFSG-LGIPVTHSPLFHQ--ARPVDYPKDYLSHQVPISF 462
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,629,926
Number of extensions: 2254885
Number of successful extensions: 15804
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 15426
Number of HSP's successfully gapped: 8
Length of query: 512
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 405
Effective length of database: 14,770,016
Effective search space: 5981856480
Effective search space used: 5981856480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003620
(1538 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033079.1| beta-1,3-N-acetylglucosaminyltransferase radica... 479 e-135
Alignment gi|NP_032520.1| beta-1,3-N-acetylglucosaminyltransferase lunati... 353 2e-97
Alignment gi|NP_032621.1| beta-1,3-N-acetylglucosaminyltransferase manic ... 314 1e-85
Alignment gi|NP_001074673.1| beta-1,3-glucosyltransferase [Mus musculus]. 55 1e-07
>ref|NP_033079.1| beta-1,3-N-acetylglucosaminyltransferase radical fringe [Mus
musculus].
Length = 332
Score = 479 bits (1233), Expect = e-135
Identities = 224/256 (87%), Positives = 237/256 (92%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TTRKNHGPRL LLLRTWISRA +QTFIFTDGDDPELQ+ G ++NTNCSAV TRQALCC
Sbjct: 67 TTRKNHGPRLRLLLRTWISRAPRQTFIFTDGDDPELQMLAGGRMINTNCSAVRTRQALCC 126
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KM+VEYDKF+ESGRKWFCHVDDDNYVNP LLHLLS+FS +QD+YLGRPSLDHPIEATER
Sbjct: 127 KMSVEYDKFLESGRKWFCHVDDDNYVNPKSLLHLLSTFSSNQDIYLGRPSLDHPIEATER 186
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
VQGGGT +VKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE
Sbjct: 187 VQGGGTSNTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 246
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
GLLGARLL SPLFHSHLENL RLP +LQQVTLSYGGPENPHNVVNVAG F++QQDPTR
Sbjct: 247 GLLGARLLHSPLFHSHLENLQRLPSGAILQQVTLSYGGPENPHNVVNVAGSFNIQQDPTR 306
Query: 722 FQSVHCLLYPDTDWCP 769
FQSVHCLLYPDT WCP
Sbjct: 307 FQSVHCLLYPDTHWCP 322
>ref|NP_032520.1| beta-1,3-N-acetylglucosaminyltransferase lunatic fringe [Mus
musculus].
Length = 378
Score = 353 bits (907), Expect = 2e-97
Identities = 173/256 (67%), Positives = 201/256 (78%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TTRK H RL LL TWISR ++ TFIFTDG+D L G+ VV TNCS+ H+RQAL C
Sbjct: 120 TTRKFHRARLDLLFETWISRHKEMTFIFTDGEDEALAKLTGN-VVLTNCSSAHSRQALSC 178
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMAVEYD+FIESG+KWFCHVDDDNYVN LL LL+S+ +QDVY+G+PSLD PI+ATER
Sbjct: 179 KMAVEYDRFIESGKKWFCHVDDDNYVNLRALLRLLASYPHTQDVYIGKPSLDRPIQATER 238
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
+ V V FWFATGGAGFC+SRGLALKM PWAS G FMSTAER+RLPDDCT+GYIVE
Sbjct: 239 ISEH-KVRPVHFWFATGGAGFCISRGLALKMGPWASGGHFMSTAERIRLPDDCTIGYIVE 297
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LLG L+RS LFHSHLENL ++P L +QVTLSYG EN N V++ G FS++ DP+R
Sbjct: 298 ALLGVPLIRSGLFHSHLENLQQVPTTELHEQVTLSYGMFENKRNAVHIKGPFSVEADPSR 357
Query: 722 FQSVHCLLYPDTDWCP 769
F+SVHC LYPDT WCP
Sbjct: 358 FRSVHCHLYPDTPWCP 373
>ref|NP_032621.1| beta-1,3-N-acetylglucosaminyltransferase manic fringe [Mus
musculus].
Length = 321
Score = 314 bits (805), Expect = 1e-85
Identities = 155/256 (60%), Positives = 184/256 (71%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TT H RL LLL TW+SR RQQTFIFTD D LQ + G H+V TNCSA H+ AL C
Sbjct: 62 TTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERLGPHLVVTNCSAEHSHPALSC 121
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMA E+D F+ SG +WFCHVDDDNYVNP LL LL +F +DVY+G+PSL+ PI A+E
Sbjct: 122 KMAAEFDAFLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASE- 180
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
+Q V+FWFATGGAGFC++R LALKM PWAS F+ T+ +RLPDDCTVGYI+E
Sbjct: 181 LQSKNRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIE 240
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LG RL SPLFHSHLE L L L +QVTLSYG E NV+ + G FS ++DP+R
Sbjct: 241 CKLGGRLQPSPLFHSHLETLQLLGAAQLPEQVTLSYGVFEGKLNVIKLPGPFSHEEDPSR 300
Query: 722 FQSVHCLLYPDTDWCP 769
F+S+HCLLYPDT WCP
Sbjct: 301 FRSLHCLLYPDTPWCP 316
>ref|NP_001074673.1| beta-1,3-glucosyltransferase [Mus musculus].
Length = 489
Score = 55.5 bits (132), Expect = 1e-07
Identities = 61/219 (27%), Positives = 90/219 (41%), Gaps = 3/219 (1%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
T +K H R+ ++ +TW A Q + I D E + + + +T + C
Sbjct: 266 TCKKFHADRIPIVKKTW---AAQASLIEYYSDYAE------TAIPTVDLGIPNTDRGHCG 316
Query: 182 KMAVEYDKFIESGRK---WFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEA 352
K +KF+ W VDDD ++ L HLLS + S V+LG
Sbjct: 317 KTFAILEKFLNHSHNKISWLVIVDDDTLISISRLRHLLSCYDSSDPVFLG---------- 366
Query: 353 TERVQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGY 532
ER G G T + + TGG G SR A++ +S + + A PDD +G
Sbjct: 367 -ER-YGYGLGTG-GYSYVTGGGGMVFSRE-AIRRLLVSSCRCYSNDA-----PDDMVLGM 417
Query: 533 IVEGLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSY 649
G LG + SPLFH P D L Q+ +S+
Sbjct: 418 CFSG-LGVPVTHSPLFHQ--ARPVDYPKDYLAHQIPVSF 453
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,305,520
Number of extensions: 1819367
Number of successful extensions: 12107
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11798
Number of HSP's successfully gapped: 4
Length of query: 512
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 406
Effective length of database: 12,433,743
Effective search space: 5048099658
Effective search space used: 5048099658
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003620
(1538 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354481.1| PREDICTED: beta-1,3-N-acetylglucosaminyltran... 373 e-103
Alignment gi|XP_003354480.1| PREDICTED: beta-1,3-N-acetylglucosaminyltran... 363 e-100
Alignment gi|XP_003124313.2| PREDICTED: beta-1,3-N-acetylglucosaminyltran... 338 4e-93
Alignment gi|XP_003355401.1| PREDICTED: hypothetical protein LOC100623938... 168 7e-42
Alignment gi|XP_003355409.1| PREDICTED: beta-1,3-N-acetylglucosaminyltran... 119 3e-27
>ref|XP_003354481.1| PREDICTED: beta-1,3-N-acetylglucosaminyltransferase lunatic
fringe-like isoform 3 [Sus scrofa].
Length = 384
Score = 373 bits (957), Expect = e-103
Identities = 180/263 (68%), Positives = 210/263 (79%), Gaps = 7/263 (2%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TT+K H RL LLL TWISR ++ TFIFTDG+D L L G+ VVNTNCSA H+RQAL C
Sbjct: 118 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEPLPLSAGN-VVNTNCSAAHSRQALSC 176
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMAVEYD+FIESGRKWFCHVDDDNYVN LL LL+S+ +QD+YLG+PSLD PI+ATER
Sbjct: 177 KMAVEYDRFIESGRKWFCHVDDDNYVNVRALLRLLASYPHTQDIYLGKPSLDRPIQATER 236
Query: 362 VQGGGTVTS-------VKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDC 520
V G G++T+ V FWFATGGAGFC+SRGLALKMSPWAS G FMSTAER+RLPDDC
Sbjct: 237 VMGSGSLTTLPLPQRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMSTAERIRLPDDC 296
Query: 521 TVGYIVEGLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFS 700
T+GYIVE LLG L+RS LFHSHLENL ++P L +QVTLSYG EN N V++ G FS
Sbjct: 297 TIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHIKGPFS 356
Query: 701 LQQDPTRFQSVHCLLYPDTDWCP 769
++ DP+RF+S+HC LYPDT WCP
Sbjct: 357 VEADPSRFRSIHCHLYPDTPWCP 379
>ref|XP_003354480.1| PREDICTED: beta-1,3-N-acetylglucosaminyltransferase lunatic
fringe-like isoform 2 [Sus scrofa].
Length = 376
Score = 363 bits (933), Expect = e-100
Identities = 177/256 (69%), Positives = 205/256 (80%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TT+K H RL LLL TWISR ++ TFIFTDG+D L + G+ VVNTNCSA H+RQAL C
Sbjct: 118 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALAKRTGN-VVNTNCSAAHSRQALSC 176
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMAVEYD+FIESGRKWFCHVDDDNYVN LL LL+S+ +QD+YLG+PSLD PI+ATER
Sbjct: 177 KMAVEYDRFIESGRKWFCHVDDDNYVNVRALLRLLASYPHTQDIYLGKPSLDRPIQATER 236
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
V V V FWFATGGAGFC+SRGLALKMSPWAS G FMSTAER+RLPDDCT+GYIVE
Sbjct: 237 VSET-KVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMSTAERIRLPDDCTIGYIVE 295
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LLG L+RS LFHSHLENL ++P L +QVTLSYG EN N V++ G FS++ DP+R
Sbjct: 296 ALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHIKGPFSVEADPSR 355
Query: 722 FQSVHCLLYPDTDWCP 769
F+S+HC LYPDT WCP
Sbjct: 356 FRSIHCHLYPDTPWCP 371
>ref|XP_003124313.2| PREDICTED: beta-1,3-N-acetylglucosaminyltransferase lunatic
fringe-like isoform 1 [Sus scrofa].
Length = 364
Score = 338 bits (868), Expect = 4e-93
Identities = 167/256 (65%), Positives = 194/256 (75%)
Frame = +2
Query: 2 TTRKNHGPRLGLLLRTWISRARQQTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCC 181
TT+K H RL LLL TWISR ++ + +VVNTNCSA H+RQAL C
Sbjct: 118 TTKKFHRARLDLLLETWISRHKEM-------------VSPRGNVVNTNCSAAHSRQALSC 164
Query: 182 KMAVEYDKFIESGRKWFCHVDDDNYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATER 361
KMAVEYD+FIESGRKWFCHVDDDNYVN LL LL+S+ +QD+YLG+PSLD PI+ATER
Sbjct: 165 KMAVEYDRFIESGRKWFCHVDDDNYVNVRALLRLLASYPHTQDIYLGKPSLDRPIQATER 224
Query: 362 VQGGGTVTSVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVE 541
V V V FWFATGGAGFC+SRGLALKMSPWAS G FMSTAER+RLPDDCT+GYIVE
Sbjct: 225 VSET-KVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMSTAERIRLPDDCTIGYIVE 283
Query: 542 GLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPENPHNVVNVAGGFSLQQDPTR 721
LLG L+RS LFHSHLENL ++P L +QVTLSYG EN N V++ G FS++ DP+R
Sbjct: 284 ALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHIKGPFSVEADPSR 343
Query: 722 FQSVHCLLYPDTDWCP 769
F+S+HC LYPDT WCP
Sbjct: 344 FRSIHCHLYPDTPWCP 359
>ref|XP_003355401.1| PREDICTED: hypothetical protein LOC100623938 [Sus scrofa].
Length = 709
Score = 168 bits (426), Expect = 7e-42
Identities = 82/133 (61%), Positives = 99/133 (74%)
Frame = +2
Query: 71 QTFIFTDGDDPELQLQGGSHVVNTNCSAVHTRQALCCKMAVEYDKFIESGRKWFCHVDDD 250
QTFIFTD D LQ + GSH+V TNCSA H+ AL CKMA E+D F+ S +WFCHVDDD
Sbjct: 33 QTFIFTDSLDKGLQERLGSHLVVTNCSAEHSHPALSCKMAAEFDAFLASRLRWFCHVDDD 92
Query: 251 NYVNPDGLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGGTVTSVKFWFATGGAGFCL 430
NY+NP LL LL +F ++DVY+GRPSL+ PI A+E Q V+FWFATGGAGFC+
Sbjct: 93 NYLNPKALLKLLKAFPRTRDVYVGRPSLNRPIHASE-PQPRNRTRLVQFWFATGGAGFCI 151
Query: 431 SRGLALKMSPWAS 469
+R LALKM+PWAS
Sbjct: 152 NRKLALKMAPWAS 164
>ref|XP_003355409.1| PREDICTED: beta-1,3-N-acetylglucosaminyltransferase manic
fringe-like [Sus scrofa].
Length = 101
Score = 119 bits (299), Expect = 3e-27
Identities = 58/96 (60%), Positives = 69/96 (71%)
Frame = +2
Query: 482 MSTAERVRLPDDCTVGYIVEGLLGARLLRSPLFHSHLENLPRLPPDTLLQQVTLSYGGPE 661
M T+ +RLPDDCTVGYIVE LG L SPLFHSHLE L L L +QVTLSYG E
Sbjct: 1 MDTSALIRLPDDCTVGYIVECKLGGHLQPSPLFHSHLETLQLLRAAQLPEQVTLSYGVFE 60
Query: 662 NPHNVVNVAGGFSLQQDPTRFQSVHCLLYPDTDWCP 769
NV+ + G FS ++DP+RF+S+HCLLYP+T WCP
Sbjct: 61 GKLNVIKLHGPFSPEEDPSRFRSLHCLLYPETPWCP 96
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,310,381
Number of extensions: 1491389
Number of successful extensions: 11788
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 11510
Number of HSP's successfully gapped: 5
Length of query: 512
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 409
Effective length of database: 8,779,541
Effective search space: 3590832269
Effective search space used: 3590832269
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003620
(1538 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 94 3e-16
>Sscrofa_Chr03
|| Length = 144787322
Score = 93.7 bits (47), Expect = 3e-16
Identities = 104/123 (84%)
Strand = Plus / Minus
Query: 478 cttcatgagcacagctgagcgggtgcggctgccagacgactgcaccgtgggctacatcgt 537
|||||||||||| || |||||| | |||||||| |||||||| ||| | |||||||||||
Sbjct: 2210365 cttcatgagcacggccgagcggatccggctgccggacgactgtaccatcggctacatcgt 2210306
Query: 538 ggaggggctgctgggcgcgcgcctgttgcgcagccccctcttccactcccacctggagaa 597
||||| |||||||||| || ||| | ||||| |||||||||||||||||||||||
Sbjct: 2210305 ggaggctctgctgggcgtgcccctcatccgcagtgggctcttccactcccacctggagaa 2210246
Query: 598 cct 600
|||
Sbjct: 2210245 cct 2210243
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,139,827
Number of extensions: 237
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 1
Length of query: 1538
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1517
Effective length of database: 2,808,413,156
Effective search space: 4260362757652
Effective search space used: 4260362757652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)