Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003635
(1055 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096016.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 433 e-121
Alignment gi|XP_002696361.1| PREDICTED: phosphodiesterase 4D, cAMP-specif... 356 2e-98
Alignment gi|XP_588063.3| PREDICTED: phosphodiesterase 4D, cAMP-specific ... 356 2e-98
Alignment gi|NP_001179528.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 294 1e-79
Alignment gi|XP_002688584.1| PREDICTED: phosphodiesterase 4C, cAMP-specif... 294 1e-79
Alignment gi|NP_001094551.1| phosphodiesterase 4A [Bos taurus]. 276 2e-74
Alignment gi|NP_001095538.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 66 5e-11
Alignment gi|XP_002690487.1| PREDICTED: phosphodiesterase 8A-like [Bos ta... 63 4e-10
Alignment gi|XP_589274.4| PREDICTED: phosphodiesterase 8B [Bos taurus]. 63 4e-10
Alignment gi|XP_002686881.1| PREDICTED: phosphodiesterase 1C, calmodulin-... 60 3e-09
>ref|NP_001096016.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4B [Bos taurus].
Length = 721
Score = 433 bits (1114), Expect = e-121
Identities = 222/240 (92%), Positives = 225/240 (93%)
Frame = +3
Query: 219 QPNYMSVCLFAEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTH 398
QP+ V L EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTH
Sbjct: 187 QPSVSRVNL-PEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTH 245
Query: 399 LSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSL 578
LSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSL
Sbjct: 246 LSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSL 305
Query: 579 NNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKT 758
NNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKT
Sbjct: 306 NNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKT 365
Query: 759 FKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
FKISSDT VTYMMTLEDHYH+DVAYHNSLHAADVAQSTHVLLSTPALD D L A+
Sbjct: 366 FKISSDTFVTYMMTLEDHYHADVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAI 425
>ref|XP_002696361.1| PREDICTED: phosphodiesterase 4D, cAMP-specific (phosphodiesterase
E3 dunce homolog, Drosophila) [Bos taurus].
Length = 806
Score = 356 bits (914), Expect = 2e-98
Identities = 183/240 (76%), Positives = 205/240 (85%)
Frame = +3
Query: 219 QPNYMSVCLFAEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTH 398
QP+ L EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTH
Sbjct: 258 QPSINKATL-TEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTH 316
Query: 399 LSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSL 578
LSEMSRSGNQVSEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL
Sbjct: 317 LSEMSRSGNQVSEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSL 374
Query: 579 NNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKT 758
N+SI RFGV TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKT
Sbjct: 375 TNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKT 434
Query: 759 FKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
FKI DTL+TY+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 435 FKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 494
>ref|XP_588063.3| PREDICTED: phosphodiesterase 4D, cAMP-specific (phosphodiesterase
E3 dunce homolog, Drosophila) isoform 1 [Bos taurus].
Length = 806
Score = 356 bits (914), Expect = 2e-98
Identities = 183/240 (76%), Positives = 205/240 (85%)
Frame = +3
Query: 219 QPNYMSVCLFAEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTH 398
QP+ L EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTH
Sbjct: 258 QPSINKATL-TEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTH 316
Query: 399 LSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSL 578
LSEMSRSGNQVSEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL
Sbjct: 317 LSEMSRSGNQVSEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSL 374
Query: 579 NNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKT 758
N+SI RFGV TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKT
Sbjct: 375 TNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKT 434
Query: 759 FKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
FKI DTL+TY+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 435 FKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 494
>ref|NP_001179528.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4C [Bos taurus].
Length = 694
Score = 294 bits (752), Expect = 1e-79
Identities = 149/229 (65%), Positives = 182/229 (79%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
+++ QKLA+ETL+ELDWCLDQLET+QT SV EMASNKFKRMLNRELTHLSE SRSGNQV
Sbjct: 167 KDTGQKLALETLDELDWCLDQLETLQTRHSVGEMASNKFKRMLNRELTHLSETSRSGNQV 226
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYIS TFL++Q +VE+P T + + ++QIS ++ L HSSSL+ ++ RFGV
Sbjct: 227 SEYISQTFLEQQTEVELPRATPAEPPRP-----VSQISSLRGLPHSSSLSTATVPRFGVQ 281
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
T+ E LAKELED +KWGL++F VA S NRPLT IM++IFQERDLLKTF+I +DTL TY
Sbjct: 282 TDQEGQLAKELEDTSKWGLDVFKVAELSGNRPLTAIMFSIFQERDLLKTFQIPADTLATY 341
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
++ LE HYH+DVAYHNSLHAADVAQSTHVLL+TPAL+ D L A+
Sbjct: 342 LLMLEGHYHNDVAYHNSLHAADVAQSTHVLLATPALEAVFTDLEVLAAI 390
>ref|XP_002688584.1| PREDICTED: phosphodiesterase 4C, cAMP-specific (phosphodiesterase
E1 dunce homolog, Drosophila) [Bos taurus].
Length = 694
Score = 294 bits (752), Expect = 1e-79
Identities = 149/229 (65%), Positives = 182/229 (79%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
+++ QKLA+ETL+ELDWCLDQLET+QT SV EMASNKFKRMLNRELTHLSE SRSGNQV
Sbjct: 167 KDTGQKLALETLDELDWCLDQLETLQTRHSVGEMASNKFKRMLNRELTHLSETSRSGNQV 226
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYIS TFL++Q +VE+P T + + ++QIS ++ L HSSSL+ ++ RFGV
Sbjct: 227 SEYISQTFLEQQTEVELPRATPAEPPRP-----VSQISSLRGLPHSSSLSTATVPRFGVQ 281
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
T+ E LAKELED +KWGL++F VA S NRPLT IM++IFQERDLLKTF+I +DTL TY
Sbjct: 282 TDQEGQLAKELEDTSKWGLDVFKVAELSGNRPLTAIMFSIFQERDLLKTFQIPADTLATY 341
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
++ LE HYH+DVAYHNSLHAADVAQSTHVLL+TPAL+ D L A+
Sbjct: 342 LLMLEGHYHNDVAYHNSLHAADVAQSTHVLLATPALEAVFTDLEVLAAI 390
>ref|NP_001094551.1| phosphodiesterase 4A [Bos taurus].
Length = 635
Score = 276 bits (706), Expect = 2e-74
Identities = 143/208 (68%), Positives = 166/208 (79%), Gaps = 15/208 (7%)
Frame = +3
Query: 360 NKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKK------- 518
++FKRMLNRELTHLSEMSRSGNQVSEYIS TFLDK+N+VEIPSPT KDREK++
Sbjct: 21 DQFKRMLNRELTHLSEMSRSGNQVSEYISTTFLDKRNEVEIPSPTIKDREKQQAPRQRPC 80
Query: 519 --------KQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNI 674
+ Q M+QI+GVKKLMHSSSLN++S+ RFGV T+ E+ LA+ELE+LNKWGLNI
Sbjct: 81 QQPPAPGPQLQPMSQITGVKKLMHSSSLNDSSMPRFGVKTDQEERLAQELENLNKWGLNI 140
Query: 675 FNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAA 854
F V+ Y+ R L+CIMY IFQERDLLK F+I DT+VTYM+TLEDHYH DVAYHNSLHAA
Sbjct: 141 FRVSDYAGGRSLSCIMYTIFQERDLLKKFRIPVDTMVTYMLTLEDHYHPDVAYHNSLHAA 200
Query: 855 DVAQSTHVLLSTPALDVSSYDPFCLPAL 938
DV QSTHVLL+TPALD D L AL
Sbjct: 201 DVLQSTHVLLATPALDAVFTDLEILAAL 228
>ref|NP_001095538.1| cAMP-specific 3',5'-cyclic phosphodiesterase 7B [Bos taurus].
Length = 438
Score = 66.2 bits (160), Expect = 5e-11
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Frame = +3
Query: 510 KKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNK---WGLNIFN 680
KKK ++L++ ++ H+S L I + ++ +ED+L + L+K W +IF
Sbjct: 118 KKKVKRLLS----FQRYFHASRLLRGIIPQAPLHLLDEDYLGQARHMLSKVGMWDFDIFL 173
Query: 681 VAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADV 860
++ L ++ +F L+ FK+ TL +++ +++ YHS YHN++HAADV
Sbjct: 174 FDRLTNGNSLVTLLCHLFNTHGLIHHFKLDMVTLHRFLVMVQEDYHSQNPYHNAVHAADV 233
Query: 861 AQSTHVLLSTPAL 899
Q+ H L P L
Sbjct: 234 TQAMHCYLKEPKL 246
>ref|XP_002690487.1| PREDICTED: phosphodiesterase 8A-like [Bos taurus].
Length = 445
Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/94 (34%), Positives = 48/94 (51%)
Frame = +3
Query: 603 GVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTL 782
G T+ +A+ L++ W NIF + +H RPL + +F + + S TL
Sbjct: 98 GTITDVPPSVAQLLDNEESWEFNIFELEAVTHKRPLVYLGLKVFSRFGVCEFLHCSETTL 157
Query: 783 VTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLL 884
++ +E +YHS AYHNS HAADV +T L
Sbjct: 158 RAWLQVIEANYHSSNAYHNSTHAADVLHATAFFL 191
>ref|XP_589274.4| PREDICTED: phosphodiesterase 8B [Bos taurus].
Length = 793
Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/94 (34%), Positives = 48/94 (51%)
Frame = +3
Query: 603 GVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTL 782
G T+ +A+ L++ W NIF + +H RPL + +F + + S TL
Sbjct: 446 GTITDVPPSVAQLLDNEESWEFNIFELEAVTHKRPLVYLGLKVFSRFGVCEFLHCSETTL 505
Query: 783 VTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLL 884
++ +E +YHS AYHNS HAADV +T L
Sbjct: 506 RAWLQVIEANYHSSNAYHNSTHAADVLHATAFFL 539
>ref|XP_002686881.1| PREDICTED: phosphodiesterase 1C, calmodulin-dependent 70kDa [Bos
taurus].
Length = 746
Score = 60.1 bits (144), Expect = 3e-09
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Frame = +3
Query: 369 KRMLNRELTHLSEMSRSG--NQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQI 542
+R+L+ E LS++ ++V +++++TF +Q + + +K R K + I
Sbjct: 141 RRLLDTE-DELSDIQSDAVPSEVRDWLASTFT-RQMGMMLRRSEEKPRFKSIVHAVQAGI 198
Query: 543 SGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIM 722
+ +S++ V + + L+D++KW ++F++ S + L I
Sbjct: 199 FVERMYRRTSNM---------VGLSYPPAVIEALKDVDKWSFDVFSLNEASGDHALKFIF 249
Query: 723 YAIFQERDLLKTFKISSDTLVTYMMTLEDHY--HSDVAYHNSLHAADVAQSTHVLL 884
Y + DL+ FKI LV+++ LE Y H + YHN +HAADV Q+ H LL
Sbjct: 250 YELLTRYDLISRFKIPISALVSFVEALEVGYSKHKN-PYHNLMHAADVTQTVHYLL 304
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,371,240
Number of extensions: 1018120
Number of successful extensions: 3938
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3917
Number of HSP's successfully gapped: 21
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003635
(1055 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536678.2| PREDICTED: similar to phosphodiesterase 4B, cAM... 433 e-121
Alignment gi|XP_544349.2| PREDICTED: similar to cAMP-specific 3,5-cyclic ... 356 2e-98
Alignment gi|XP_852383.1| PREDICTED: similar to cAMP-specific 3,5-cyclic ... 298 6e-81
Alignment gi|XP_541113.2| PREDICTED: similar to cAMP-specific 3,5-cyclic ... 66 5e-11
Alignment gi|XP_546056.2| PREDICTED: similar to phosphodiesterase 8B isof... 62 9e-10
Alignment gi|XP_544104.2| PREDICTED: similar to phosphodiesterase 7A isof... 60 3e-09
Alignment gi|XP_858544.1| PREDICTED: similar to phosphodiesterase 7A isof... 60 3e-09
Alignment gi|XP_854529.1| PREDICTED: similar to cGMP-inhibited 3,5-cyclic... 60 3e-09
Alignment gi|XP_852114.1| PREDICTED: similar to Calcium/calmodulin-depend... 60 3e-09
Alignment gi|XP_532505.2| PREDICTED: similar to phosphodiesterase 1C, cal... 60 3e-09
>ref|XP_536678.2| PREDICTED: similar to phosphodiesterase 4B, cAMP-specific
(phosphodiesterase E4 dunce homolog, Drosophila) [Canis
familiaris].
Length = 710
Score = 433 bits (1113), Expect = e-121
Identities = 216/217 (99%), Positives = 216/217 (99%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 186 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 245
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN
Sbjct: 246 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 305
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDT VTY
Sbjct: 306 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTFVTY 365
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD 902
MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD
Sbjct: 366 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD 402
>ref|XP_544349.2| PREDICTED: similar to cAMP-specific 3,5-cyclic phosphodiesterase 4D
(DPDE3) (PDE43) [Canis familiaris].
Length = 792
Score = 356 bits (913), Expect = 2e-98
Identities = 180/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 253 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 312
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 313 SEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 370
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 371 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 430
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 431 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 479
>ref|XP_852383.1| PREDICTED: similar to cAMP-specific 3,5-cyclic phosphodiesterase 4C
(DPDE1) (PDE21) [Canis familiaris].
Length = 903
Score = 298 bits (763), Expect = 6e-81
Identities = 152/229 (66%), Positives = 183/229 (79%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
E++ QKLA+ETL+ELDWCLDQLET+QT SV EMASNKFKRMLNRELTHLSE SRSGNQV
Sbjct: 377 EDTGQKLALETLDELDWCLDQLETLQTRHSVGEMASNKFKRMLNRELTHLSETSRSGNQV 436
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYIS TFLD+Q ++E+P T + + M+QISG++ L HS+SL+ +I RFGV
Sbjct: 437 SEYISQTFLDQQTEMELPRVTPMETPRP-----MSQISGLRGLPHSASLSAATIPRFGVQ 491
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
T+ E LAKELED NKWGL++F VA S NRPLT I+++IFQERDLLKTF+I +DTL TY
Sbjct: 492 TDQEGQLAKELEDTNKWGLDVFKVAELSGNRPLTTIIFSIFQERDLLKTFQIPADTLATY 551
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
++ LE HYH+DVAYHNSLHAADVAQSTHVLL+TPAL+ D L A+
Sbjct: 552 LLMLESHYHADVAYHNSLHAADVAQSTHVLLATPALEAVFTDLEVLAAV 600
>ref|XP_541113.2| PREDICTED: similar to cAMP-specific 3,5-cyclic phosphodiesterase 7B
[Canis familiaris].
Length = 505
Score = 66.2 bits (160), Expect = 5e-11
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Frame = +3
Query: 510 KKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNK---WGLNIFN 680
KKK ++L++ ++ H+S L I + ++ +ED+L + L+K W +IF
Sbjct: 118 KKKVKRLLS----FQRYFHASRLLRGIIPQAPLHLLDEDYLGQARHMLSKVGMWDFDIFL 173
Query: 681 VAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADV 860
++ L ++ +F L+ FK+ TL +++ +++ YHS YHN++HAADV
Sbjct: 174 FDRLTNGNSLVTLLCHLFNTHGLIHHFKLDMVTLHRFLVMVQEDYHSQNPYHNAVHAADV 233
Query: 861 AQSTHVLLSTPAL 899
Q+ H L P L
Sbjct: 234 TQAIHCYLKEPKL 246
>ref|XP_546056.2| PREDICTED: similar to phosphodiesterase 8B isoform 1 [Canis
familiaris].
Length = 836
Score = 62.0 bits (149), Expect = 9e-10
Identities = 30/85 (35%), Positives = 45/85 (52%)
Frame = +3
Query: 630 LAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLED 809
+A+ L++ W NIF + +H RPL + +F + + S TL ++ +E
Sbjct: 498 IAQLLDNEESWEFNIFELEAVTHKRPLVYLGLKVFSRFGVCEFLHCSETTLRAWLQVIEA 557
Query: 810 HYHSDVAYHNSLHAADVAQSTHVLL 884
+YHS AYHNS HAADV +T L
Sbjct: 558 NYHSSNAYHNSTHAADVLHATAFFL 582
>ref|XP_544104.2| PREDICTED: similar to phosphodiesterase 7A isoform a isoform 1
[Canis familiaris].
Length = 457
Score = 60.1 bits (144), Expect = 3e-09
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Frame = +3
Query: 405 EMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNN 584
E R G+ YI Q+++E+ + R +S + L S
Sbjct: 52 ESERRGSH--PYIDFRIFHAQSEIEVSVSARNIRRL---------LSFQRYLRSSRFFRG 100
Query: 585 TSISRFGVNTENEDHLAKE---LEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLK 755
T++S +N ++D+ + LE + W +IF ++ L + + +F L++
Sbjct: 101 TTVSN-SLNILDDDYNGQAKCMLEKVGNWNFDIFLFDRLTNGNSLVSLTFHLFSLHGLIE 159
Query: 756 TFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPF 923
F + L +++ +++ YHS YHN++HAADV Q+ H L P L SS P+
Sbjct: 160 YFNLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKL-ASSVTPW 214
>ref|XP_858544.1| PREDICTED: similar to phosphodiesterase 7A isoform a isoform 2
[Canis familiaris].
Length = 398
Score = 60.1 bits (144), Expect = 3e-09
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Frame = +3
Query: 405 EMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNN 584
E R G+ YI Q+++E+ + R +S + L S
Sbjct: 52 ESERRGSH--PYIDFRIFHAQSEIEVSVSARNIRRL---------LSFQRYLRSSRFFRG 100
Query: 585 TSISRFGVNTENEDHLAKE---LEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLK 755
T++S +N ++D+ + LE + W +IF ++ L + + +F L++
Sbjct: 101 TTVSN-SLNILDDDYNGQAKCMLEKVGNWNFDIFLFDRLTNGNSLVSLTFHLFSLHGLIE 159
Query: 756 TFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPF 923
F + L +++ +++ YHS YHN++HAADV Q+ H L P L SS P+
Sbjct: 160 YFNLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKL-ASSVTPW 214
>ref|XP_854529.1| PREDICTED: similar to cGMP-inhibited 3,5-cyclic phosphodiesterase B
(Cyclic GMP inhibited phosphodiesterase B) (CGI-PDE B)
(CGIPDE1) (CGIP1) [Canis familiaris].
Length = 779
Score = 60.1 bits (144), Expect = 3e-09
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +3
Query: 642 LEDLNKWGLNIFNVA---GYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDH 812
+E ++ W IF V G R L+ +MY +FQ+ LL+ FKI + + Y LE+
Sbjct: 334 IEKMSNWNFQIFEVVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTLQFINYFRALENG 393
Query: 813 YHSDVAYHNSLHAADVAQSTHVLLSTP 893
Y D+ YHN +HA DV + L + P
Sbjct: 394 YR-DIPYHNRIHATDVLHAVWYLTTRP 419
>ref|XP_852114.1| PREDICTED: similar to Calcium/calmodulin-dependent 3,5-cyclic
nucleotide phosphodiesterase 1C (Cam-PDE 1C) (hCam-3)
isoform 2 [Canis familiaris].
Length = 670
Score = 60.1 bits (144), Expect = 3e-09
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Frame = +3
Query: 369 KRMLNRELTHLSEMSRSG--NQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQI 542
+R+L+ E LS++ ++V +++++TF +Q + + +K R K + I
Sbjct: 42 RRLLDTE-DELSDIQSDAVPSEVRDWLASTFT-RQMGMMLRRSEEKPRFKSIVHAVQAGI 99
Query: 543 SGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIM 722
+ +S++ V + + L+D++KW ++F++ S + L I
Sbjct: 100 FVERMYRRTSNM---------VGLSYPPAVIEALKDVDKWSFDVFSLNEASGDHALKFIF 150
Query: 723 YAIFQERDLLKTFKISSDTLVTYMMTLEDHY--HSDVAYHNSLHAADVAQSTHVLL 884
Y + DL+ FKI LV+++ LE Y H + YHN +HAADV Q+ H LL
Sbjct: 151 YELLTRYDLISRFKIPISALVSFVEALEVGYSKHKN-PYHNLMHAADVTQTVHYLL 205
>ref|XP_532505.2| PREDICTED: similar to phosphodiesterase 1C, calmodulin-dependent
70kDa isoform 1 [Canis familiaris].
Length = 595
Score = 60.1 bits (144), Expect = 3e-09
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Frame = +3
Query: 369 KRMLNRELTHLSEMSRSG--NQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQI 542
+R+L+ E LS++ ++V +++++TF +Q + + +K R K + I
Sbjct: 42 RRLLDTE-DELSDIQSDAVPSEVRDWLASTFT-RQMGMMLRRSEEKPRFKSIVHAVQAGI 99
Query: 543 SGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIM 722
+ +S++ V + + L+D++KW ++F++ S + L I
Sbjct: 100 FVERMYRRTSNM---------VGLSYPPAVIEALKDVDKWSFDVFSLNEASGDHALKFIF 150
Query: 723 YAIFQERDLLKTFKISSDTLVTYMMTLEDHY--HSDVAYHNSLHAADVAQSTHVLL 884
Y + DL+ FKI LV+++ LE Y H + YHN +HAADV Q+ H LL
Sbjct: 151 YELLTRYDLISRFKIPISALVSFVEALEVGYSKHKN-PYHNLMHAADVTQTVHYLL 205
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,563,349
Number of extensions: 964345
Number of successful extensions: 4197
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4178
Number of HSP's successfully gapped: 12
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003635
(1055 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032416.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 466 e-131
Alignment gi|NP_001032418.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 432 e-121
Alignment gi|NP_001032417.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 432 e-121
Alignment gi|NP_002591.2| cAMP-specific 3',5'-cyclic phosphodiesterase 4B... 432 e-121
Alignment gi|NP_001184151.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 363 e-100
Alignment gi|NP_001098101.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 354 7e-98
Alignment gi|NP_006194.2| cAMP-specific 3',5'-cyclic phosphodiesterase 4D... 354 7e-98
Alignment gi|NP_001159371.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 354 7e-98
Alignment gi|NP_001184149.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 354 7e-98
Alignment gi|NP_001184148.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 354 7e-98
>ref|NP_001032416.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 2 [Homo
sapiens].
Length = 564
Score = 466 bits (1200), Expect = e-131
Identities = 238/268 (88%), Positives = 241/268 (89%), Gaps = 1/268 (0%)
Frame = +3
Query: 138 MKEHGATFXXXXXXXXXXXXXXX-LQPLQPNYMSVCLFAEESYQKLAMETLEELDWCLDQ 314
MKEHG TF LQPLQPNYM VCLFAEESYQKLAMETLEELDWCLDQ
Sbjct: 1 MKEHGGTFSSTGISGGSGDSAMDSLQPLQPNYMPVCLFAEESYQKLAMETLEELDWCLDQ 60
Query: 315 LETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPT 494
LETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPT
Sbjct: 61 LETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPT 120
Query: 495 QKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNI 674
QKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNI
Sbjct: 121 QKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNI 180
Query: 675 FNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAA 854
FNVAGYSHNRPLTCIMYAIFQERDLLKTF+ISSDT +TYMMTLEDHYHSDVAYHNSLHAA
Sbjct: 181 FNVAGYSHNRPLTCIMYAIFQERDLLKTFRISSDTFITYMMTLEDHYHSDVAYHNSLHAA 240
Query: 855 DVAQSTHVLLSTPALDVSSYDPFCLPAL 938
DVAQSTHVLLSTPALD D L A+
Sbjct: 241 DVAQSTHVLLSTPALDAVFTDLEILAAI 268
>ref|NP_001032418.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 1 [Homo
sapiens].
Length = 736
Score = 432 bits (1111), Expect = e-121
Identities = 217/229 (94%), Positives = 220/229 (96%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 212 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 271
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN
Sbjct: 272 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 331
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTF+ISSDT +TY
Sbjct: 332 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFRISSDTFITY 391
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD D L A+
Sbjct: 392 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAI 440
>ref|NP_001032417.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 3 [Homo
sapiens].
Length = 721
Score = 432 bits (1111), Expect = e-121
Identities = 217/229 (94%), Positives = 220/229 (96%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 197 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 256
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN
Sbjct: 257 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 316
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTF+ISSDT +TY
Sbjct: 317 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFRISSDTFITY 376
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD D L A+
Sbjct: 377 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAI 425
>ref|NP_002591.2| cAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 1 [Homo
sapiens].
Length = 736
Score = 432 bits (1111), Expect = e-121
Identities = 217/229 (94%), Positives = 220/229 (96%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 212 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 271
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN
Sbjct: 272 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 331
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTF+ISSDT +TY
Sbjct: 332 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFRISSDTFITY 391
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD D L A+
Sbjct: 392 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAI 440
>ref|NP_001184151.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D1
[Homo sapiens].
Length = 585
Score = 363 bits (932), Expect = e-100
Identities = 183/233 (78%), Positives = 205/233 (87%)
Frame = +3
Query: 240 CLFAEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRS 419
CLFAEE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRS
Sbjct: 42 CLFAEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRS 101
Query: 420 GNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISR 599
GNQVSE+ISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI R
Sbjct: 102 GNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPR 159
Query: 600 FGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDT 779
FGV TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DT
Sbjct: 160 FGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDT 219
Query: 780 LVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
L+TY+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 220 LITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 272
>ref|NP_001098101.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D4
[Homo sapiens].
Length = 809
Score = 354 bits (909), Expect = 7e-98
Identities = 179/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 270 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 329
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SE+ISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 330 SEFISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 387
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 388 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 447
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 448 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 496
>ref|NP_006194.2| cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D3
[Homo sapiens].
Length = 673
Score = 354 bits (909), Expect = 7e-98
Identities = 179/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 134 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 193
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SE+ISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 194 SEFISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 251
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 252 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 311
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 312 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 360
>ref|NP_001159371.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D7
[Homo sapiens].
Length = 748
Score = 354 bits (909), Expect = 7e-98
Identities = 179/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 209 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 268
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SE+ISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 269 SEFISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 326
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 327 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 386
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 387 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 435
>ref|NP_001184149.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D9
[Homo sapiens].
Length = 679
Score = 354 bits (909), Expect = 7e-98
Identities = 179/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 140 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 199
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SE+ISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 200 SEFISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 257
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 258 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 317
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 318 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 366
>ref|NP_001184148.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform PDE4D8
[Homo sapiens].
Length = 687
Score = 354 bits (909), Expect = 7e-98
Identities = 179/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 148 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 207
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SE+ISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 208 SEFISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 265
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 266 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 325
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 326 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 374
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,825,061
Number of extensions: 938038
Number of successful extensions: 4262
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 4224
Number of HSP's successfully gapped: 43
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003635
(1055 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171451.1| phosphodiesterase 4B isoform 2 [Mus musculus]. 462 e-130
Alignment gi|NP_062814.2| phosphodiesterase 4B isoform 1 [Mus musculus]. 434 e-122
Alignment gi|NP_001171452.1| phosphodiesterase 4B isoform 3 [Mus musculus]. 361 e-100
Alignment gi|NP_035186.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4D... 354 7e-98
Alignment gi|NP_001171453.1| phosphodiesterase 4B isoform 4 [Mus musculus]. 353 2e-97
Alignment gi|NP_899668.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4A... 320 2e-87
Alignment gi|NP_963901.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4C... 279 3e-75
Alignment gi|NP_062772.3| cAMP-specific 3',5'-cyclic phosphodiesterase 4A... 257 9e-69
Alignment gi|NP_035185.2| cGMP-inhibited 3',5'-cyclic phosphodiesterase B... 65 9e-11
Alignment gi|NP_038903.3| cAMP-specific 3',5'-cyclic phosphodiesterase 7B... 65 1e-10
>ref|NP_001171451.1| phosphodiesterase 4B isoform 2 [Mus musculus].
Length = 564
Score = 462 bits (1188), Expect = e-130
Identities = 232/244 (95%), Positives = 234/244 (95%)
Frame = +3
Query: 207 LQPLQPNYMSVCLFAEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNR 386
LQPLQPNY+SVCLF EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNR
Sbjct: 25 LQPLQPNYLSVCLFPEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNR 84
Query: 387 ELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMH 566
ELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMH
Sbjct: 85 ELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMH 144
Query: 567 SSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERD 746
SSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERD
Sbjct: 145 SSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERD 204
Query: 747 LLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFC 926
LLKTFKISSDT VTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD D
Sbjct: 205 LLKTFKISSDTFVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEI 264
Query: 927 LPAL 938
L A+
Sbjct: 265 LAAI 268
>ref|NP_062814.2| phosphodiesterase 4B isoform 1 [Mus musculus].
Length = 721
Score = 434 bits (1115), Expect = e-122
Identities = 219/229 (95%), Positives = 220/229 (96%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 197 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 256
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN
Sbjct: 257 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 316
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDT VTY
Sbjct: 317 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTFVTY 376
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD D L A+
Sbjct: 377 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAI 425
>ref|NP_001171452.1| phosphodiesterase 4B isoform 3 [Mus musculus].
Length = 503
Score = 361 bits (926), Expect = e-100
Identities = 182/192 (94%), Positives = 183/192 (95%)
Frame = +3
Query: 363 KFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQI 542
KFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQI
Sbjct: 16 KFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQI 75
Query: 543 SGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIM 722
SGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIM
Sbjct: 76 SGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIM 135
Query: 723 YAIFQERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD 902
YAIFQERDLLKTFKISSDT VTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD
Sbjct: 136 YAIFQERDLLKTFKISSDTFVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD 195
Query: 903 VSSYDPFCLPAL 938
D L A+
Sbjct: 196 AVFTDLEILAAI 207
>ref|NP_035186.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4D [Mus musculus].
Length = 747
Score = 354 bits (908), Expect = 7e-98
Identities = 179/229 (78%), Positives = 200/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 209 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 268
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+ I RFGV
Sbjct: 269 SEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSCIPRFGVK 326
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 327 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 386
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 387 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 435
>ref|NP_001171453.1| phosphodiesterase 4B isoform 4 [Mus musculus].
Length = 484
Score = 353 bits (905), Expect = 2e-97
Identities = 178/188 (94%), Positives = 179/188 (95%)
Frame = +3
Query: 375 MLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVK 554
MLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVK
Sbjct: 1 MLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVK 60
Query: 555 KLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIF 734
KLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIF
Sbjct: 61 KLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIF 120
Query: 735 QERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSY 914
QERDLLKTFKISSDT VTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD
Sbjct: 121 QERDLLKTFKISSDTFVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFT 180
Query: 915 DPFCLPAL 938
D L A+
Sbjct: 181 DLEILAAI 188
>ref|NP_899668.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4A isoform 5 [Mus
musculus].
Length = 844
Score = 320 bits (819), Expect = 2e-87
Identities = 168/244 (68%), Positives = 199/244 (81%), Gaps = 9/244 (3%)
Frame = +3
Query: 234 SVC--LFAEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSE 407
SVC +EE+ Q+LA ETLEELDWCL+QLET+QTYRSVSEMAS+KFKRMLNRELTHLSE
Sbjct: 211 SVCKATLSEETCQQLARETLEELDWCLEQLETMQTYRSVSEMASHKFKRMLNRELTHLSE 270
Query: 408 MSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKK-------KQQLMTQISGVKKLMH 566
MSRSGNQVSEYISNTFLDKQ++VEIPSPT + R ++ + Q M+QI+G+KKL+H
Sbjct: 271 MSRSGNQVSEYISNTFLDKQHEVEIPSPTPRQRPFQQPPPAAVQQAQPMSQITGLKKLVH 330
Query: 567 SSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERD 746
+ SLN ++ RFGV T+ ED LA+ELE+L+KWGLNIF V+ Y+ R L+CIMY IFQERD
Sbjct: 331 TGSLN-INVPRFGVKTDQEDLLAQELENLSKWGLNIFCVSEYAGGRSLSCIMYTIFQERD 389
Query: 747 LLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFC 926
LLK F I DT++TYM+TLEDHYH+DVAYHNSLHAADV QSTHVLL+TPALD D
Sbjct: 390 LLKKFHIPVDTMMTYMLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTDLEI 449
Query: 927 LPAL 938
L AL
Sbjct: 450 LAAL 453
>ref|NP_963901.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4C [Mus musculus].
Length = 652
Score = 279 bits (713), Expect = 3e-75
Identities = 143/229 (62%), Positives = 176/229 (76%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
E+S +L ETLEELDWCL+QLET+QT RSV EMASNKFKRMLNREL++LSE SRSGNQV
Sbjct: 201 EDSGLQLVQETLEELDWCLEQLETLQTRRSVGEMASNKFKRMLNRELSYLSETSRSGNQV 260
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYIS TFLD+Q +VE+P P +D M QI+ +++ H+S L +I RFGV
Sbjct: 261 SEYISQTFLDQQAEVELPQPPTEDDPWP-----MAQITELRRSSHTS-LPTAAIPRFGVQ 314
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
T+ E+ LAKELED NKWGL++F VA S NRPLT +++++FQERDLLKTF+I +DTL+ Y
Sbjct: 315 TDQEEQLAKELEDTNKWGLDVFKVAELSGNRPLTAVIFSVFQERDLLKTFQIPADTLLAY 374
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
++TLE HYHSDVAYHNS+HAADV QS HVLL TPAL+ D L A+
Sbjct: 375 LLTLEGHYHSDVAYHNSMHAADVVQSAHVLLGTPALEAVFTDLEVLAAI 423
>ref|NP_062772.3| cAMP-specific 3',5'-cyclic phosphodiesterase 4A isoform 1 [Mus
musculus].
Length = 610
Score = 257 bits (657), Expect = 9e-69
Identities = 134/200 (67%), Positives = 161/200 (80%), Gaps = 7/200 (3%)
Frame = +3
Query: 360 NKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKK------- 518
++FKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQ++VEIPSPT + R ++
Sbjct: 21 DQFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQHEVEIPSPTPRQRPFQQPPPAAVQ 80
Query: 519 KQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSH 698
+ Q M+QI+G+KKL+H+ SLN ++ RFGV T+ ED LA+ELE+L+KWGLNIF V+ Y+
Sbjct: 81 QAQPMSQITGLKKLVHTGSLN-INVPRFGVKTDQEDLLAQELENLSKWGLNIFCVSEYAG 139
Query: 699 NRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHV 878
R L+CIMY IFQERDLLK F I DT++TYM+TLEDHYH+DVAYHNSLHAADV QSTHV
Sbjct: 140 GRSLSCIMYTIFQERDLLKKFHIPVDTMMTYMLTLEDHYHADVAYHNSLHAADVLQSTHV 199
Query: 879 LLSTPALDVSSYDPFCLPAL 938
LL+TPALD D L AL
Sbjct: 200 LLATPALDAVFTDLEILAAL 219
>ref|NP_035185.2| cGMP-inhibited 3',5'-cyclic phosphodiesterase B [Mus musculus].
Length = 1099
Score = 65.1 bits (157), Expect = 9e-11
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 5/171 (2%)
Frame = +3
Query: 396 HLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSS 575
H SE +SG + S S + + I +++ KK ++L + G LM +
Sbjct: 576 HPSE--KSGEEDSSVFS------KEPLNIVETQEEETMKKACRELF--LEGDSHLMEEAQ 625
Query: 576 LNNTS--ISRFGVNTENEDHLAKELEDLNKWGLNIFNVA---GYSHNRPLTCIMYAIFQE 740
N +S + E+ D L +E +N W IF + G R L+ +MY +FQ+
Sbjct: 626 QPNIDQEVSLDPMLVEDYDSL---IEKMNNWNFQIFELVEKMGEKSGRILSQVMYTLFQD 682
Query: 741 RDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTP 893
LL+TFKI + + Y LE+ Y D+ YHN +HA DV + L + P
Sbjct: 683 TGLLETFKIPTQEFMNYFRALENGYR-DIPYHNRVHATDVLHAVWYLTTRP 732
>ref|NP_038903.3| cAMP-specific 3',5'-cyclic phosphodiesterase 7B [Mus musculus].
Length = 446
Score = 64.7 bits (156), Expect = 1e-10
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Frame = +3
Query: 510 KKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNK---WGLNIFN 680
KKK ++L++ ++ H+S L I + ++ +ED+L + L+K W +IF
Sbjct: 66 KKKVKRLLS----FQRYFHASRLLRGIIPQAPLHLLDEDYLGQARHMLSKVGTWDFDIFL 121
Query: 681 VAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADV 860
++ L ++ +F L+ FK+ TL +++ +++ YH YHN++HAADV
Sbjct: 122 FDRLTNGNSLVTLLCHLFNSHGLIHHFKLDMVTLHRFLVMVQEDYHGHNPYHNAVHAADV 181
Query: 861 AQSTHVLLSTPAL 899
Q+ H L P L
Sbjct: 182 TQAMHCYLKEPKL 194
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,241,085
Number of extensions: 790983
Number of successful extensions: 3292
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 3266
Number of HSP's successfully gapped: 29
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003635
(1055 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123490.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 476 e-135
Alignment gi|NP_001123491.1| cAMP-specific 3',5'-cyclic phosphodiesterase... 434 e-122
Alignment gi|XP_003359832.1| PREDICTED: cAMP-specific 3',5'-cyclic phosph... 356 1e-98
Alignment gi|XP_003359831.1| PREDICTED: cAMP-specific 3',5'-cyclic phosph... 356 1e-98
Alignment gi|XP_003359830.1| PREDICTED: cAMP-specific 3',5'-cyclic phosph... 356 1e-98
Alignment gi|XP_003359829.1| PREDICTED: cAMP-specific 3',5'-cyclic phosph... 356 1e-98
Alignment gi|XP_003359828.1| PREDICTED: cAMP-specific 3',5'-cyclic phosph... 356 1e-98
Alignment gi|XP_003359833.1| PREDICTED: cAMP-specific 3',5'-cyclic phosph... 354 4e-98
Alignment gi|XP_003134032.2| PREDICTED: cAMP-specific 3',5'-cyclic phosph... 300 9e-82
Alignment gi|XP_003361769.1| PREDICTED: cAMP-specific 3',5'-cyclic phosph... 298 3e-81
>ref|NP_001123490.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 2 [Sus
scrofa].
Length = 563
Score = 476 bits (1225), Expect = e-135
Identities = 242/267 (90%), Positives = 243/267 (91%)
Frame = +3
Query: 138 MKEHGATFXXXXXXXXXXXXXXXLQPLQPNYMSVCLFAEESYQKLAMETLEELDWCLDQL 317
MKEHGATF LQPLQPNYMSVCLFAEESYQKLAMETLEELDWCLDQL
Sbjct: 1 MKEHGATFSSGGIGGSGDSAMDSLQPLQPNYMSVCLFAEESYQKLAMETLEELDWCLDQL 60
Query: 318 ETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQ 497
ETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQ
Sbjct: 61 ETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQ 120
Query: 498 KDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIF 677
KDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIF
Sbjct: 121 KDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIF 180
Query: 678 NVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAAD 857
NVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMT EDHYHSDVAYHNSLHAAD
Sbjct: 181 NVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTFEDHYHSDVAYHNSLHAAD 240
Query: 858 VAQSTHVLLSTPALDVSSYDPFCLPAL 938
VAQSTHVLLSTPALD D L A+
Sbjct: 241 VAQSTHVLLSTPALDAVFTDLEILAAI 267
>ref|NP_001123491.1| cAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 1 [Sus
scrofa].
Length = 736
Score = 434 bits (1115), Expect = e-122
Identities = 219/229 (95%), Positives = 220/229 (96%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 212 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 271
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN
Sbjct: 272 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 331
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY
Sbjct: 332 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 391
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
MMT EDHYHSDVAYHNSLHAADVAQSTHVLLSTPALD D L A+
Sbjct: 392 MMTFEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAI 440
>ref|XP_003359832.1| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform
6 [Sus scrofa].
Length = 687
Score = 356 bits (913), Expect = 1e-98
Identities = 180/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 148 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 207
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 208 SEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 265
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 266 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 325
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 326 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 374
>ref|XP_003359831.1| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform
5 [Sus scrofa].
Length = 809
Score = 356 bits (913), Expect = 1e-98
Identities = 180/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 270 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 329
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 330 SEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 387
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 388 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 447
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 448 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 496
>ref|XP_003359830.1| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform
4 [Sus scrofa].
Length = 748
Score = 356 bits (913), Expect = 1e-98
Identities = 180/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 209 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 268
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 269 SEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 326
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 327 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 386
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 387 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 435
>ref|XP_003359829.1| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform
3 [Sus scrofa].
Length = 673
Score = 356 bits (913), Expect = 1e-98
Identities = 180/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 134 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 193
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 194 SEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 251
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 252 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 311
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 312 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 360
>ref|XP_003359828.1| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform
2 [Sus scrofa].
Length = 746
Score = 356 bits (913), Expect = 1e-98
Identities = 180/229 (78%), Positives = 201/229 (87%)
Frame = +3
Query: 252 EESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 431
EE+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQV
Sbjct: 207 EEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQV 266
Query: 432 SEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVN 611
SEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 267 SEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGVK 324
Query: 612 TENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTY 791
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+TY
Sbjct: 325 TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITY 384
Query: 792 MMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 385 LMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 433
>ref|XP_003359833.1| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform
7 [Sus scrofa].
Length = 542
Score = 354 bits (909), Expect = 4e-98
Identities = 179/230 (77%), Positives = 201/230 (87%)
Frame = +3
Query: 249 AEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQ 428
+ E+YQKLA ETLEELDWCLDQLET+QT SVSEMASNKFKRMLNRELTHLSEMSRSGNQ
Sbjct: 2 SNEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQ 61
Query: 429 VSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGV 608
VSEYISNTFLDKQ++VEIPSPTQK++EKKK+ M+QISGVKKLMHSSSL N+SI RFGV
Sbjct: 62 VSEYISNTFLDKQHEVEIPSPTQKEKEKKKRP--MSQISGVKKLMHSSSLTNSSIPRFGV 119
Query: 609 NTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVT 788
TE ED LAKELED+NKWGL++F +A S NRPLT IM+ IFQERDLLKTFKI DTL+T
Sbjct: 120 KTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLIT 179
Query: 789 YMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
Y+MTLEDHYH+DVAYHN++HAADV QSTHVLLSTPAL+ D L A+
Sbjct: 180 YLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAI 229
>ref|XP_003134032.2| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D isoform
1 [Sus scrofa].
Length = 507
Score = 300 bits (768), Expect = 9e-82
Identities = 152/196 (77%), Positives = 171/196 (87%)
Frame = +3
Query: 351 MASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQL 530
MASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQ++VEIPSPTQK++EKKK+
Sbjct: 1 MASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQHEVEIPSPTQKEKEKKKRP-- 58
Query: 531 MTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPL 710
M+QISGVKKLMHSSSL N+SI RFGV TE ED LAKELED+NKWGL++F +A S NRPL
Sbjct: 59 MSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPL 118
Query: 711 TCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLST 890
T IM+ IFQERDLLKTFKI DTL+TY+MTLEDHYH+DVAYHN++HAADV QSTHVLLST
Sbjct: 119 TVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLST 178
Query: 891 PALDVSSYDPFCLPAL 938
PAL+ D L A+
Sbjct: 179 PALEAVFTDLEILAAI 194
>ref|XP_003361769.1| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4B-like,
partial [Sus scrofa].
Length = 455
Score = 298 bits (764), Expect = 3e-81
Identities = 150/159 (94%), Positives = 151/159 (94%)
Frame = +3
Query: 462 KQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKE 641
KQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKE
Sbjct: 1 KQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKE 60
Query: 642 LEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHS 821
LEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHS
Sbjct: 61 LEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTLVTYMMTLEDHYHS 120
Query: 822 DVAYHNSLHAADVAQSTHVLLSTPALDVSSYDPFCLPAL 938
DVAYHNSLHAADVAQSTHVLLSTPALD D L A+
Sbjct: 121 DVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAI 159
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,248,320
Number of extensions: 789844
Number of successful extensions: 2453
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 2427
Number of HSP's successfully gapped: 23
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003635
(1055 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 644 0.0
gb|GL895308.2| Sus scrofa unplaced genomic scaffold ChrUScaf3192 432 e-118
gb|JH118970.1| Sus scrofa unplaced genomic scaffold ChrUScaf3835 323 1e-85
Sscrofa_Chr02 80 3e-12
>Sscrofa_Chr06
|| Length = 157765593
Score = 644 bits (325), Expect = 0.0
Identities = 352/365 (96%)
Strand = Plus / Plus
Query: 1 tcttggtagatcactgacacctcatccagccctnnnnnnnnnnnntgaaaacttggcacc 60
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 134870923 tcttggtagatcactgacacctcatccagccctgggggcggggggtgaaaacttggcacc 134870982
Query: 61 agcgtctcggcccgagcaccacggtgatttgctctcctggtggagagagctggaaggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134870983 agcgtctcggcccgagcaccacggtgatttgctctcctggtggagagagctggaaggaag 134871042
Query: 121 gagtcggcgcgcaaataatgaaggagcacggggccaccttcagtagcggcggcatcggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134871043 gagtcggcgcgcaaataatgaaggagcacggggccaccttcagtagcggcggcatcggcg 134871102
Query: 181 gcagcggtgactcggctatggacagcctgcagccgctccagcctaactacatgtctgtgt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 134871103 gcagcggtgactcggctatggacagcctgcagccgctccaacctaactacatgtctgtgt 134871162
Query: 241 gtttgtttgcagaagaatcttatcaaaaattagcaatggaaacgctggaggaactggact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134871163 gtttgtttgcagaagaatcttatcaaaaattagcaatggaaacgctggaggaactggact 134871222
Query: 301 ggtgcttagaccagctagagaccatccagacctaccgctctgtcagtgagatggcttcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134871223 ggtgcttagaccagctagagaccatccagacctaccgctctgtcagtgagatggcttcca 134871282
Query: 361 acaag 365
|||||
Sbjct: 134871283 acaag 134871287
Score = 432 bits (218), Expect = e-118
Identities = 225/226 (99%), Gaps = 1/226 (0%)
Strand = Plus / Plus
Query: 735 caggaaagagacctcctaaagacattcaaaatctcctcggacacgcttgttacctacatg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134903802 caggaaagagacctcctaaagacattcaaaatctcctcggacacgcttgttacctacatg 134903861
Query: 795 atgacgttagaagaccattaccattccgacgtggcctatcataacagcctgcacgctgcc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134903862 atgacgttagaagaccattaccattccgacgtggcctatcataacagcctgcacgctgcc 134903921
Query: 855 gacgtggcccagtcaacccatgttcttctttccacgccagcgttagatgtgagtagttat 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134903922 gacgtggcccagtcaacccatgttcttctttccacgccagcgttagatgtgagtagttat 134903981
Query: 915 gatccgttttgcctacctgcccttcctctttt-aaagtaccatgca 959
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 134903982 gatccgttttgcctacctgcccttcctcttttaaaagtaccatgca 134904027
Score = 361 bits (182), Expect = 5e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 458 agacaagcagaatgacgtggagattccatctcctacccagaaagacagggagaaaaagaa 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134901975 agacaagcagaatgacgtggagattccatctcctacccagaaagacagggagaaaaagaa 134902034
Query: 518 gaagcagcagctcatgacacagataagcggagtgaaaaaactgatgcacagttcaagctt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134902035 gaagcagcagctcatgacacagataagcggagtgaaaaaactgatgcacagttcaagctt 134902094
Query: 578 aaataacacaagcatttcacgctttggagtcaacacggaaaatgaagatcatctggccaa 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134902095 aaataacacaagcatttcacgctttggagtcaacacggaaaatgaagatcatctggccaa 134902154
Query: 638 gg 639
||
Sbjct: 134902155 gg 134902156
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 637 aggagctggaagacctgaacaaatggggccttaacatcttcaatgtggctggctattcac 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134903563 aggagctggaagacctgaacaaatggggccttaacatcttcaatgtggctggctattcac 134903622
Query: 697 acaacaggcccttgacatgcatcatgtacgccatcttccagg 738
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134903623 acaacaggcccttgacatgcatcatgtacgccatcttccagg 134903664
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 364 agttcaaaagaatgctgaaccgggagctgacacacctctcagaaatgagccgttcgggga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134896202 agttcaaaagaatgctgaaccgggagctgacacacctctcagaaatgagccgttcgggga 134896261
Query: 424 atcaggtgtctgaatacatttcaaatactttcttag 459
||||||||||||||||||||||||||||||||||||
Sbjct: 134896262 atcaggtgtctgaatacatttcaaatactttcttag 134896297
>gb|GL895308.2| Sus scrofa unplaced genomic scaffold ChrUScaf3192
Length = 422688
Score = 432 bits (218), Expect = e-118
Identities = 225/226 (99%), Gaps = 1/226 (0%)
Strand = Plus / Plus
Query: 735 caggaaagagacctcctaaagacattcaaaatctcctcggacacgcttgttacctacatg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 caggaaagagacctcctaaagacattcaaaatctcctcggacacgcttgttacctacatg 3084
Query: 795 atgacgttagaagaccattaccattccgacgtggcctatcataacagcctgcacgctgcc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 atgacgttagaagaccattaccattccgacgtggcctatcataacagcctgcacgctgcc 3144
Query: 855 gacgtggcccagtcaacccatgttcttctttccacgccagcgttagatgtgagtagttat 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145 gacgtggcccagtcaacccatgttcttctttccacgccagcgttagatgtgagtagttat 3204
Query: 915 gatccgttttgcctacctgcccttcctctttt-aaagtaccatgca 959
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3205 gatccgttttgcctacctgcccttcctcttttaaaagtaccatgca 3250
Score = 361 bits (182), Expect = 5e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 458 agacaagcagaatgacgtggagattccatctcctacccagaaagacagggagaaaaagaa 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 agacaagcagaatgacgtggagattccatctcctacccagaaagacagggagaaaaagaa 1257
Query: 518 gaagcagcagctcatgacacagataagcggagtgaaaaaactgatgcacagttcaagctt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 gaagcagcagctcatgacacagataagcggagtgaaaaaactgatgcacagttcaagctt 1317
Query: 578 aaataacacaagcatttcacgctttggagtcaacacggaaaatgaagatcatctggccaa 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 aaataacacaagcatttcacgctttggagtcaacacggaaaatgaagatcatctggccaa 1377
Query: 638 gg 639
||
Sbjct: 1378 gg 1379
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 637 aggagctggaagacctgaacaaatggggccttaacatcttcaatgtggctggctattcac 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2786 aggagctggaagacctgaacaaatggggccttaacatcttcaatgtggctggctattcac 2845
Query: 697 acaacaggcccttgacatgcatcatgtacgccatcttccagg 738
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2846 acaacaggcccttgacatgcatcatgtacgccatcttccagg 2887
>gb|JH118970.1| Sus scrofa unplaced genomic scaffold ChrUScaf3835
Length = 173388
Score = 323 bits (163), Expect = 1e-85
Identities = 166/167 (99%)
Strand = Plus / Minus
Query: 199 tggacagcctgcagccgctccagcctaactacatgtctgtgtgtttgtttgcagaagaat 258
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 84638 tggacagcctgcagccgctccaacctaactacatgtctgtgtgtttgtttgcagaagaat 84579
Query: 259 cttatcaaaaattagcaatggaaacgctggaggaactggactggtgcttagaccagctag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84578 cttatcaaaaattagcaatggaaacgctggaggaactggactggtgcttagaccagctag 84519
Query: 319 agaccatccagacctaccgctctgtcagtgagatggcttccaacaag 365
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84518 agaccatccagacctaccgctctgtcagtgagatggcttccaacaag 84472
Score = 246 bits (124), Expect = 2e-62
Identities = 148/160 (92%)
Strand = Plus / Minus
Query: 1 tcttggtagatcactgacacctcatccagccctnnnnnnnnnnnntgaaaacttggcacc 60
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 84900 tcttggtagatcactgacacctcatccagccctgggggcggggggtgaaaacttggcacc 84841
Query: 61 agcgtctcggcccgagcaccacggtgatttgctctcctggtggagagagctggaaggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84840 agcgtctcggcccgagcaccacggtgatttgctctcctggtggagagagctggaaggaag 84781
Query: 121 gagtcggcgcgcaaataatgaaggagcacggggccacctt 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 84780 gagtcggcgcgcaaataatgaaggagcacggggccacctt 84741
>Sscrofa_Chr02
|| Length = 162569375
Score = 79.8 bits (40), Expect = 3e-12
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 286 tggaggaactggactggtgcttagaccagctagagaccatccagacctaccgctctgtca 345
||||||| ||||||||||| | || ||||| |||||||| |||||||||||||||||||
Sbjct: 69606056 tggaggagctggactggtgtctggaacagctggagaccatgcagacctaccgctctgtca 69606115
Query: 346 gtgagatggcttccaacaag 365
| |||||||| ||| |||||
Sbjct: 69606116 gcgagatggcctcccacaag 69606135
Score = 65.9 bits (33), Expect = 4e-08
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 821 cgacgtggcctatcataacagcctgcacgctgccgacgtggcccagtcaacccatgt 877
|||||||||||| || |||||||| ||||| ||||||||||||||||| || |||||
Sbjct: 59130615 cgacgtggcctaccacaacagcctacacgccgccgacgtggcccagtccacacatgt 59130671
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,463,896
Number of extensions: 283
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 14
Length of query: 1055
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1034
Effective length of database: 2,808,413,156
Effective search space: 2903899203304
Effective search space used: 2903899203304
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)