Animal-Genome cDNA 20110601C-003643

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003643
         (1087 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001071439.1| G-rich sequence factor 1 [Bos taurus].            619   e-177
Alignment   gi|NP_001014860.1| heterogeneous nuclear ribonucleoprotein F [B...   236   3e-62
Alignment   gi|NP_001180163.1| heterogeneous nuclear ribonucleoprotein H [B...   203   2e-52
Alignment   gi|XP_002688530.1| PREDICTED: heterogeneous nuclear ribonucleop...   203   2e-52
Alignment   gi|NP_001069476.1| heterogeneous nuclear ribonucleoprotein H2 [...   199   3e-51
Alignment   gi|NP_001179931.1| epithelial splicing regulatory protein 1 [Bo...   126   3e-29
Alignment   gi|XP_002692862.1| PREDICTED: epithelial splicing regulatory pr...   126   3e-29
Alignment   gi|XP_002685850.1| PREDICTED: fusilli-like [Bos taurus].             125   7e-29
Alignment   gi|XP_001789374.1| PREDICTED: RNA binding motif protein 35A [Bo...   125   7e-29
Alignment   gi|NP_001192614.1| epithelial splicing regulatory protein 2 [Bo...   121   9e-28

>ref|NP_001071439.1| G-rich sequence factor 1 [Bos taurus].
          Length = 481

 Score =  619 bits (1597), Expect = e-177
 Identities = 312/340 (91%), Positives = 320/340 (94%), Gaps = 1/340 (0%)
 Frame = +1

Query: 70   ESKTTXXXXXXXXXXXXXXXSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGE 249
            ESKTT               SKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGE
Sbjct: 121  ESKTTYLEDLPPLPEYELPPSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGE 180

Query: 250  NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNL 429
            NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMK+L
Sbjct: 181  NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 240

Query: 430  HVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEE 609
            HVKS P+VNDGVVRLRGLPYSCNEKDIVDFFAGL+IVDITFVMDYRGRRKTGEAYVQFEE
Sbjct: 241  HVKSAPMVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEE 300

Query: 610  PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEE 789
            PEMA+QALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKK+ASSPTAKYITEPEM FEE
Sbjct: 301  PEMASQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEE 360

Query: 790  -EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIIN 966
             EVNED+RPMTAFESEKEIELPKEMSEK+PEAVDFGTTSSLHFVHMRGLPFQANAQDIIN
Sbjct: 361  HEVNEDIRPMTAFESEKEIELPKEMSEKIPEAVDFGTTSSLHFVHMRGLPFQANAQDIIN 420

Query: 967  FFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            FFAPLKPVRITMEYSSSGKATGEADVHF+T  DAVAAMLK
Sbjct: 421  FFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLK 460



 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 56/228 (24%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 339
           ++R +GLP+SC  +D++ FF+   I +    I F+++  G+R+ G+A ++ E  +   +A
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMASQA 307

Query: 340 LEKHRMYMGQRYVEVYEINNEDVDALM---KNLHVKSTPV---------------VNDGV 465
           L KHR  +G RY+E++     +V   +   K   + S+P                VN+ +
Sbjct: 308 LLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDI 367

Query: 466 ------------------------------------VRLRGLPYSCNEKDIVDFFAGLHI 537
                                               V +RGLP+  N +DI++FFA L  
Sbjct: 368 RPMTAFESEKEIELPKEMSEKIPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKP 427

Query: 538 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 678
           V IT  M+Y    K TGEA V F+  E A  A+LK R  + +RYIE+F
Sbjct: 428 VRIT--MEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 473


>ref|NP_001014860.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus].
          Length = 414

 Score =  236 bits (601), Expect = 3e-62
 Identities = 138/346 (39%), Positives = 201/346 (58%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+VEDV +F SDC I +G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++I+ FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIIQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVG--------SHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAF 825
            E+F S + EVR++             G         +YI   + A  E +          
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRSGAYSAGYG 241

Query: 826  ESEKEIELP-----------KEMSEKLPEAVD--FG------TTSSLHFVHMRGLPFQAN 948
              E+   L            +++S  L    D  +G       +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001180163.1| heterogeneous nuclear ribonucleoprotein H [Bos taurus].
          Length = 449

 Score =  203 bits (517), Expect = 2e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


>ref|XP_002688530.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1 (H) [Bos
           taurus].
          Length = 449

 Score =  203 bits (517), Expect = 2e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


>ref|NP_001069476.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus].
          Length = 449

 Score =  199 bits (507), Expect = 3e-51
 Identities = 96/193 (49%), Positives = 141/193 (73%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           L  E  + ++++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+  R+G+  G+A +E+E
Sbjct: 3   LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ N+ ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   +T  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 35/59 (59%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL P+R+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ + +   +   GR  TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGR-VTGEADVEFATHEDAVAAMAKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


>ref|NP_001179931.1| epithelial splicing regulatory protein 1 [Bos taurus].
          Length = 677

 Score =  126 bits (317), Expect = 3e-29
 Identities = 97/328 (29%), Positives = 154/328 (46%), Gaps = 13/328 (3%)
 Frame = +1

Query: 142  EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 321
            E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R G+AL+   SE
Sbjct: 219  ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSE 276

Query: 322  QDVQKALEKHRMYMGQRYVEVYEINNED---VDALMKNLHVKSTPVVNDGVVRLRGLPYS 492
            +    AL++H+ +MG RY+EVY+   ED   +     N   +     N  +VR+RGLP++
Sbjct: 277  EHRDLALQRHKHHMGSRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFT 336

Query: 493  CNEKDIVDFFAGLHI------VDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 654
                ++V FF G H         I FV  Y   R TG+A+V F   E A  AL KH++ +
Sbjct: 337  ATADEVVAFF-GQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLL 394

Query: 655  GNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAFESE 834
            G RYIE+F S   EV+  +      + +S+P     T P           + P+      
Sbjct: 395  GKRYIELFRSTAAEVQQVL-----NRFSSAPLIPLPTPP-----------IIPV------ 432

Query: 835  KEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITM 1002
                LP++             T+    + +RGLP+ A  +DI++F       ++   + M
Sbjct: 433  ----LPQQF---------VPPTNIRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHM 479

Query: 1003 EYSSSGKATGEADVHFETP*DAVAAMLK 1086
              +  G+ +G+A +  ++   A  A  K
Sbjct: 480  VLNHQGRPSGDAFIQMKSADRAFMAAQK 507



 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 57/203 (28%), Positives = 108/203 (53%), Gaps = 24/203 (11%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 339
           ++R +GLP++ T ++V++FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 340 LEKHRMYMGQRYVEVYEINNEDVDALMKN------LHVKSTPVVN------------DGV 465
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRDC 446

Query: 466 VRLRGLPYSCNEKDIVDFFA----GLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 633
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 634 LK-HREEIGNRYIEIFPSRRNEV 699
            K H++ + +RY+E+F     E+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEM 528



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +1

Query: 166 IRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 345
           IR +GLP++ T+ED+L F  +       +G+H +LN  G+  GDA I+M+S      A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 346 K-HRMYMGQRYVEVYEINNEDVDALM 420
           K H+  M  RYVEV++ + E+++ ++
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532


>ref|XP_002692862.1| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus].
          Length = 677

 Score =  126 bits (317), Expect = 3e-29
 Identities = 97/328 (29%), Positives = 154/328 (46%), Gaps = 13/328 (3%)
 Frame = +1

Query: 142  EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 321
            E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R G+AL+   SE
Sbjct: 219  ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSE 276

Query: 322  QDVQKALEKHRMYMGQRYVEVYEINNED---VDALMKNLHVKSTPVVNDGVVRLRGLPYS 492
            +    AL++H+ +MG RY+EVY+   ED   +     N   +     N  +VR+RGLP++
Sbjct: 277  EHRDLALQRHKHHMGSRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFT 336

Query: 493  CNEKDIVDFFAGLHI------VDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 654
                ++V FF G H         I FV  Y   R TG+A+V F   E A  AL KH++ +
Sbjct: 337  ATADEVVAFF-GQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLL 394

Query: 655  GNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAFESE 834
            G RYIE+F S   EV+  +      + +S+P     T P           + P+      
Sbjct: 395  GKRYIELFRSTAAEVQQVL-----NRFSSAPLIPLPTPP-----------IIPV------ 432

Query: 835  KEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITM 1002
                LP++             T+    + +RGLP+ A  +DI++F       ++   + M
Sbjct: 433  ----LPQQF---------VPPTNIRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHM 479

Query: 1003 EYSSSGKATGEADVHFETP*DAVAAMLK 1086
              +  G+ +G+A +  ++   A  A  K
Sbjct: 480  VLNHQGRPSGDAFIQMKSADRAFMAAQK 507



 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 57/203 (28%), Positives = 108/203 (53%), Gaps = 24/203 (11%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 339
           ++R +GLP++ T ++V++FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 340 LEKHRMYMGQRYVEVYEINNEDVDALMKN------LHVKSTPVVN------------DGV 465
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRDC 446

Query: 466 VRLRGLPYSCNEKDIVDFFA----GLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 633
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 634 LK-HREEIGNRYIEIFPSRRNEV 699
            K H++ + +RY+E+F     E+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEM 528



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +1

Query: 166 IRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 345
           IR +GLP++ T+ED+L F  +       +G+H +LN  G+  GDA I+M+S      A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 346 K-HRMYMGQRYVEVYEINNEDVDALM 420
           K H+  M  RYVEV++ + E+++ ++
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532


>ref|XP_002685850.1| PREDICTED: fusilli-like [Bos taurus].
          Length = 767

 Score =  125 bits (314), Expect = 7e-29
 Identities = 97/328 (29%), Positives = 153/328 (46%), Gaps = 13/328 (3%)
 Frame = +1

Query: 142  EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 321
            E +DD  ++RA+GLPW    +D+  FF    I  G  G    LN  G+R G+AL+   SE
Sbjct: 219  ELIDDNTVVRARGLPWQSLDQDIARFFKGLNIAKG--GAALCLNAQGQRNGEALVRFVSE 276

Query: 322  QDVQKALEKHRMYMGQRYVEVYEINNED---VDALMKNLHVKSTPVVNDGVVRLRGLPYS 492
            +    AL++H+ +MG RY+EVY+   ED   +     N   +     N  +VR+RGLP++
Sbjct: 277  EHRDLALQRHKHHMGSRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFT 336

Query: 493  CNEKDIVDFFAGLHI------VDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 654
                ++V FF G H         I FV  Y   R TG+A+V F   E A  AL KH++ +
Sbjct: 337  ATADEVVAFF-GQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLL 394

Query: 655  GNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAFESE 834
            G RYIE+F S   EV+  +      + +S+P     T P           + P+      
Sbjct: 395  GKRYIELFRSTAAEVQQVL-----NRFSSAPLIPLPTPP-----------IIPV------ 432

Query: 835  KEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITM 1002
                LP++             T+    + +RGLP+ A  +DI++F       ++   + M
Sbjct: 433  ----LPQQF---------VPPTNIRDCIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHM 479

Query: 1003 EYSSSGKATGEADVHFETP*DAVAAMLK 1086
              +  G+ +G+A +  ++   A  A  K
Sbjct: 480  VLNHQGRPSGDAFIQMKSADRAFMAAQK 507



 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 24/203 (11%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 339
           ++R +GLP++ T ++V++FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 340 LEKHRMYMGQRYVEVYEINNEDVDALMKN------LHVKSTPVVN------------DGV 465
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRDC 446

Query: 466 VRLRGLPYSCNEKDIVDFFA----GLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 633
           +RLRGLPY    +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 634 LK-HREEIGNRYIEIFPSRRNEV 699
            K H++ + +RY+E+F     E+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEM 528



 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = +1

Query: 166 IRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 345
           IR +GLP+  T ED+L F  +       +G+H +LN  G+  GDA I+M+S      A +
Sbjct: 447 IRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 346 K-HRMYMGQRYVEVYEINNEDVDALM 420
           K H+  M  RYVEV++ + E+++ ++
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532


>ref|XP_001789374.1| PREDICTED: RNA binding motif protein 35A [Bos taurus].
          Length = 665

 Score =  125 bits (314), Expect = 7e-29
 Identities = 97/328 (29%), Positives = 153/328 (46%), Gaps = 13/328 (3%)
 Frame = +1

Query: 142  EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 321
            E +DD  ++RA+GLPW    +D+  FF    I  G  G    LN  G+R G+AL+   SE
Sbjct: 219  ELIDDNTVVRARGLPWQSLDQDIARFFKGLNIAKG--GAALCLNAQGQRNGEALVRFVSE 276

Query: 322  QDVQKALEKHRMYMGQRYVEVYEINNED---VDALMKNLHVKSTPVVNDGVVRLRGLPYS 492
            +    AL++H+ +MG RY+EVY+   ED   +     N   +     N  +VR+RGLP++
Sbjct: 277  EHRDLALQRHKHHMGSRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFT 336

Query: 493  CNEKDIVDFFAGLHI------VDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 654
                ++V FF G H         I FV  Y   R TG+A+V F   E A  AL KH++ +
Sbjct: 337  ATADEVVAFF-GQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLL 394

Query: 655  GNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAFESE 834
            G RYIE+F S   EV+  +      + +S+P     T P           + P+      
Sbjct: 395  GKRYIELFRSTAAEVQQVL-----NRFSSAPLIPLPTPP-----------IIPV------ 432

Query: 835  KEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITM 1002
                LP++             T+    + +RGLP+ A  +DI++F       ++   + M
Sbjct: 433  ----LPQQF---------VPPTNIRDCIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHM 479

Query: 1003 EYSSSGKATGEADVHFETP*DAVAAMLK 1086
              +  G+ +G+A +  ++   A  A  K
Sbjct: 480  VLNHQGRPSGDAFIQMKSADRAFMAAQK 507



 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 24/203 (11%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 339
           ++R +GLP++ T ++V++FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 340 LEKHRMYMGQRYVEVYEINNEDVDALMKN------LHVKSTPVVN------------DGV 465
           L KH+  +G+RY+E++     +V  ++        + + + P++                
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRDC 446

Query: 466 VRLRGLPYSCNEKDIVDFFA----GLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 633
           +RLRGLPY    +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 634 LK-HREEIGNRYIEIFPSRRNEV 699
            K H++ + +RY+E+F     E+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEM 528



 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = +1

Query: 166 IRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 345
           IR +GLP+  T ED+L F  +       +G+H +LN  G+  GDA I+M+S      A +
Sbjct: 447 IRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 346 K-HRMYMGQRYVEVYEINNEDVDALM 420
           K H+  M  RYVEV++ + E+++ ++
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532


>ref|NP_001192614.1| epithelial splicing regulatory protein 2 [Bos taurus].
          Length = 717

 Score =  121 bits (304), Expect = 9e-28
 Identities = 89/321 (27%), Positives = 144/321 (44%), Gaps = 11/321 (3%)
 Frame = +1

Query: 148  VDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQD 327
            VD   ++RA+GLPW  + +DV  FF    I  G  G+   LN  G+R G+ALI     + 
Sbjct: 243  VDSETVVRARGLPWQSSDQDVARFFKGLNIARG--GVALCLNAQGRRNGEALIRFVDSEQ 300

Query: 328  VQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVV---NDGVVRLRGLPYSCN 498
               AL++H+ +MG RY+EVY+   E+   +     ++    +   +  ++RLRGLP+S  
Sbjct: 301  RDLALQRHKHHMGVRYIEVYKATGEEFVKIAGGTSLEVARFLSREDQVILRLRGLPFSAG 360

Query: 499  EKDIVDFFAGLHIV----DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRY 666
              D++ F      V    D    + +   R TG+A+  F   E+A  AL +H+  +G RY
Sbjct: 361  PADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRY 420

Query: 667  IEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAFESEKEIE 846
            IE+F S   EV+  +      + ASSP    +T P                         
Sbjct: 421  IELFRSTAAEVQQVL-----NRYASSPLLPTLTAP------------------------- 450

Query: 847  LPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSS 1014
                    LP        +    V +RGLP+ A  +DI++F       ++P  + M  + 
Sbjct: 451  -------LLPIPFPLAAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQ 503

Query: 1015 SGKATGEADVHFETP*DAVAA 1077
             G+ +G+A +   +   A+AA
Sbjct: 504  QGRPSGDAFIQMTSAERALAA 524



 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 24/226 (10%)
 Frame = +1

Query: 151  DDVYLIRAQGLPWSCTVEDVLSFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQD 327
            +D  ++R +GLP+S    DVL F   +C +  G +G+ F+ + DG+  GDA      E+ 
Sbjct: 345  EDQVILRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEEL 404

Query: 328  VQKALEKHRMYMGQRYVEVYE---------INNEDVDALMKNLHVKSTPV-------VND 459
             Q AL +H+  +G+RY+E++          +N      L+  L     P+          
Sbjct: 405  AQAALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGR 464

Query: 460  GVVRLRGLPYSCNEKDIVDFFAGLHIVDIT-----FVMDYRGRRKTGEAYVQFEEPEMAN 624
              VRLRGLPY+   +DI+ F  G   VDI       V++ +G R +G+A++Q    E A 
Sbjct: 465  DCVRLRGLPYTATIEDILSFL-GEAAVDIRPHGVHMVLNQQG-RPSGDAFIQMTSAERAL 522

Query: 625  QALLK-HREEIGNRYIEIFPSRRNEV-RTHVGSHKGKKMASSPTAK 756
             A  + H++ +  RY+E+ P    E+ R  +G   G+   S P  K
Sbjct: 523  AAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSPPPCK 568



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 7/222 (3%)
 Frame = +1

Query: 436  KSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEE 609
            K+  V ++ VVR RGLP+  +++D+  FF GL+I    +   ++ +GRR  GEA ++F +
Sbjct: 239  KADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRR-NGEALIRFVD 297

Query: 610  PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEE 789
             E  + AL +H+  +G RYIE++ +   E     G        S   A++++      E+
Sbjct: 298  SEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGG------TSLEVARFLSR-----ED 346

Query: 790  EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINF 969
            +V                                        + +RGLPF A   D++ F
Sbjct: 347  QV---------------------------------------ILRLRGLPFSAGPADVLGF 367

Query: 970  FAPLKPVR-----ITMEYSSSGKATGEADVHFETP*DAVAAM 1080
              P  PV      +       G+ TG+A   F     A AA+
Sbjct: 368  LGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,374,690
Number of extensions: 1053250
Number of successful extensions: 3420
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3302
Number of HSP's successfully gapped: 50
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003643
         (1087 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532402.2| PREDICTED: similar to G-rich RNA sequence bindi...   618   e-177
Alignment   gi|XP_856830.1| PREDICTED: similar to Heterogeneous nuclear rib...   258   7e-69
Alignment   gi|XP_861992.1| PREDICTED: similar to Heterogeneous nuclear rib...   254   1e-67
Alignment   gi|XP_856874.1| PREDICTED: similar to Heterogeneous nuclear rib...   253   3e-67
Alignment   gi|XP_862024.1| PREDICTED: similar to Heterogeneous nuclear rib...   249   4e-66
Alignment   gi|XP_857122.1| PREDICTED: similar to Heterogeneous nuclear rib...   203   2e-52
Alignment   gi|XP_857080.1| PREDICTED: similar to Heterogeneous nuclear rib...   203   2e-52
Alignment   gi|XP_848777.1| PREDICTED: similar to Heterogeneous nuclear rib...   203   2e-52
Alignment   gi|XP_538576.2| PREDICTED: similar to Heterogeneous nuclear rib...   203   2e-52
Alignment   gi|XP_856955.1| PREDICTED: similar to Heterogeneous nuclear rib...   203   2e-52

>ref|XP_532402.2| PREDICTED: similar to G-rich RNA sequence binding factor 1 [Canis
            familiaris].
          Length = 372

 Score =  618 bits (1594), Expect = e-177
 Identities = 311/347 (89%), Positives = 322/347 (92%), Gaps = 1/347 (0%)
 Frame = +1

Query: 49   LVSRRPMESKTTXXXXXXXXXXXXXXXSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSD 228
            +   +  ESKTT               SKLGEEVDDVYLIRAQGLPWSCT+EDV++FFSD
Sbjct: 5    ITKMKARESKTTYLEDIPPLPEYELASSKLGEEVDDVYLIRAQGLPWSCTIEDVVNFFSD 64

Query: 229  CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV 408
            CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV
Sbjct: 65   CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDV 124

Query: 409  DALMKNLHVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGE 588
            DALMK+L VKS+PVVNDGVVRLRGLPYSCNEKDIVDFFAGL+IVDITFVMDYRGRRKTGE
Sbjct: 125  DALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGE 184

Query: 589  AYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITE 768
            AYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITE
Sbjct: 185  AYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITE 244

Query: 769  PEMAFEE-EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQA 945
            PEMAFEE EVNED+RPMTAFESEKEIELPKEMSEKLPEAVDFG TSSLHFVHMRGLPFQA
Sbjct: 245  PEMAFEEHEVNEDIRPMTAFESEKEIELPKEMSEKLPEAVDFGATSSLHFVHMRGLPFQA 304

Query: 946  NAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            NAQDIINFFAPLKPVRITMEYSS+GKATGEADVHF+T  DAVAAMLK
Sbjct: 305  NAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLK 351



 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 56/228 (24%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 339
           ++R +GLP+SC  +D++ FF+   I +    I F+++  G+R+ G+A ++ E  +   +A
Sbjct: 143 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 198

Query: 340 LEKHRMYMGQRYVEVYEIN-------------------------------------NEDV 408
           L KHR  +G RY+E++                                        NED+
Sbjct: 199 LLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEHEVNEDI 258

Query: 409 DA-----------LMKNLHVKSTPVVNDGV------VRLRGLPYSCNEKDIVDFFAGLHI 537
                        L K +  K    V+ G       V +RGLP+  N +DI++FFA L  
Sbjct: 259 RPMTAFESEKEIELPKEMSEKLPEAVDFGATSSLHFVHMRGLPFQANAQDIINFFAPLKP 318

Query: 538 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 678
           V IT  M+Y    K TGEA V F+  E A  A+LK R  + +RYIE+F
Sbjct: 319 VRIT--MEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELF 364


>ref|XP_856830.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) isoform 14 [Canis familiaris].
          Length = 398

 Score =  258 bits (659), Expect = 7e-69
 Identities = 146/322 (45%), Positives = 201/322 (62%), Gaps = 5/322 (1%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3    LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
            ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAFESEKEIEL 849
            EIF S R EVRTH    + K MA      Y    +          +     FE  +    
Sbjct: 182  EIFKSSRAEVRTHYDPPR-KLMAMQRPGPY----DRPGAGRGYNSIGRGAGFERMRRGAY 236

Query: 850  PKEMSEKLPEAVDFGTT---SSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSG 1020
               MS+      D G+T   ++ H VHMRGLP++A   DI NFF+PL PVR+ +E    G
Sbjct: 237  GGGMSDH--RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG 294

Query: 1021 KATGEADVHFETP*DAVAAMLK 1086
            + TGEADV F T  DAVAAM K
Sbjct: 295  RVTGEADVEFATHEDAVAAMSK 316



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 57/218 (26%), Positives = 89/218 (40%), Gaps = 47/218 (21%)
 Frame = +1

Query: 166 IRAQGLPWSCTVEDVLSFFSDCRI--------------RNGENGIHFL--------LNRD 279
           +R +GLP+ C+ E+++ FFS   I                GE  + F         L + 
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172

Query: 280 GKRRGDALIEM--ESEQDVQKALEKHRMYMGQRYVEVYE-------INNEDVDALMKNLH 432
            +R G   IE+   S  +V+   +  R  M  +    Y+        N+    A  + + 
Sbjct: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMR 232

Query: 433 V------KSTPVVNDG----------VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDY 564
                   S     DG           V +RGLPY   E DI +FF+ L+ V +   +  
Sbjct: 233 RGAYGGGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGP 292

Query: 565 RGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 678
            G R TGEA V+F   E A  A+ K +  + +RY+E+F
Sbjct: 293 DG-RVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF 329


>ref|XP_861992.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) (FTP-3) isoform 5 [Canis familiaris].
          Length = 399

 Score =  254 bits (648), Expect = 1e-67
 Identities = 140/319 (43%), Positives = 198/319 (62%), Gaps = 2/319 (0%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            L  E  + ++++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+  R+G+  G+A +E+E
Sbjct: 3    LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE +V+ AL+K R  MG RYVEV++ N+ ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
            ++++IV FF+GL IV   +T  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  SKEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAFESEKEIEL 849
            EIF S R EVRTH    + K MA      Y    +          +   T FE  +    
Sbjct: 182  EIFKSSRAEVRTHYDPPR-KLMAMQRPGPY----DRPGAGRGYNSIGRGTGFERMRRGAY 236

Query: 850  PKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 1029
                         F +T+  H VHMRGLP++A   DI NFF+PL P+R+ +E    G+ T
Sbjct: 237  GMSDHRYGDGGSSFQSTTG-HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 295

Query: 1030 GEADVHFETP*DAVAAMLK 1086
            GEADV F T  DAVAAM K
Sbjct: 296  GEADVEFATHEDAVAAMAK 314



 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 47/218 (21%)
 Frame = +1

Query: 166 IRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 345
           +R +GLP+ C+ E+++ FFS   I    NG+   ++  G+  G+A ++  S++  +KAL+
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIV--PNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 170

Query: 346 KHRMYMGQRYVEVYEINNEDV-------------------------------------DA 414
           KH+  +G RY+E+++ +  +V                                     + 
Sbjct: 171 KHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGTGFER 230

Query: 415 LMKNLHVKSTPVVNDG----------VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDY 564
           + +  +  S     DG           V +RGLPY   E DI +FF+ L+ + +   +  
Sbjct: 231 MRRGAYGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP 290

Query: 565 RGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 678
            GR  TGEA V+F   E A  A+ K +  + +RY+E+F
Sbjct: 291 DGR-VTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 327


>ref|XP_856874.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) isoform 15 [Canis familiaris].
          Length = 430

 Score =  253 bits (645), Expect = 3e-67
 Identities = 145/330 (43%), Positives = 200/330 (60%), Gaps = 13/330 (3%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3    LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
            ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVN--------EDVRPMTAF 825
            EIF S R EVRTH    + K MA      Y           +         +D       
Sbjct: 182  EIFKSSRAEVRTHYDPPR-KLMAMQRPGPYDRPGAGRGYNSIGRGAGYGGYDDYNGYNDG 240

Query: 826  ESEKEIELPKEMSEKLPEAVDFGTT---SSLHFVHMRGLPFQANAQDIINFFAPLKPVRI 996
                     + MS+      D G+T   ++ H VHMRGLP++A   DI NFF+PL PVR+
Sbjct: 241  YGFGSDRFGRGMSDH--RYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRV 298

Query: 997  TMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
             +E    G+ TGEADV F T  DAVAAM K
Sbjct: 299  HIEIGPDGRVTGEADVEFATHEDAVAAMSK 328



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 272 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 330

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 331 ANMQHRYVELF 341


>ref|XP_862024.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) (FTP-3) isoform 6 [Canis familiaris].
          Length = 408

 Score =  249 bits (635), Expect = 4e-66
 Identities = 137/324 (42%), Positives = 198/324 (61%), Gaps = 7/324 (2%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            L  E  + ++++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+  R+G+  G+A +E+E
Sbjct: 3    LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE +V+ AL+K R  MG RYVEV++ N+ ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
            ++++IV FF+GL IV   +T  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  SKEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVN-----EDVRPMTAFESE 834
            EIF S R EVRTH    + K MA      Y           +      E +R       +
Sbjct: 182  EIFKSSRAEVRTHYDPPR-KLMAMQRPGPYDRPGAGRGYNSIGRGTGFERMRRGAYGGGD 240

Query: 835  KEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSS 1014
                       +  +      +++ H VHMRGLP++A   DI NFF+PL P+R+ +E   
Sbjct: 241  LNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP 300

Query: 1015 SGKATGEADVHFETP*DAVAAMLK 1086
             G+ TGEADV F T  DAVAAM K
Sbjct: 301  DGRVTGEADVEFATHEDAVAAMAK 324



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 31/90 (34%), Positives = 49/90 (54%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ + +   +   GR  TGEA V+F   E A  A+ K +
Sbjct: 268 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGR-VTGEADVEFATHEDAVAAMAKDK 326

Query: 646 EEIGNRYIEIFPSRRNEVRTHVGSHKGKKM 735
             + +RY+E+F +     R   G++  + M
Sbjct: 327 ANMQHRYVELFLNSTAGTRASGGAYGSQMM 356


>ref|XP_857122.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
           (hnRNP H) isoform 19 [Canis familiaris].
          Length = 449

 Score =  203 bits (517), Expect = 2e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


>ref|XP_857080.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
           (hnRNP H) isoform 18 [Canis familiaris].
          Length = 472

 Score =  203 bits (517), Expect = 2e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


>ref|XP_848777.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
           (hnRNP H) isoform 3 [Canis familiaris].
          Length = 439

 Score =  203 bits (517), Expect = 2e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


>ref|XP_538576.2| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
           (hnRNP H) isoform 2 [Canis familiaris].
          Length = 442

 Score =  203 bits (517), Expect = 2e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 282  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 340



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 284 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 342

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 343 ANMQHRYVELF 353


>ref|XP_856955.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
           (hnRNP H) isoform 17 [Canis familiaris].
          Length = 452

 Score =  203 bits (517), Expect = 2e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,020,781
Number of extensions: 1075489
Number of successful extensions: 3990
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 3729
Number of HSP's successfully gapped: 119
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003643
         (1087 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002083.3| G-rich sequence factor 1 isoform 1 [Homo sapien...   603   e-173
Alignment   gi|NP_001091947.1| G-rich sequence factor 1 isoform 2 [Homo sap...   557   e-159
Alignment   gi|NP_001091676.1| heterogeneous nuclear ribonucleoprotein F [H...   234   8e-62
Alignment   gi|NP_001091674.1| heterogeneous nuclear ribonucleoprotein F [H...   234   8e-62
Alignment   gi|NP_001091675.1| heterogeneous nuclear ribonucleoprotein F [H...   234   8e-62
Alignment   gi|NP_001091677.1| heterogeneous nuclear ribonucleoprotein F [H...   234   8e-62
Alignment   gi|NP_001091678.1| heterogeneous nuclear ribonucleoprotein F [H...   234   8e-62
Alignment   gi|NP_004957.1| heterogeneous nuclear ribonucleoprotein F [Homo...   234   8e-62
Alignment   gi|NP_005511.1| heterogeneous nuclear ribonucleoprotein H [Homo...   203   2e-52
Alignment   gi|NP_001027565.1| heterogeneous nuclear ribonucleoprotein H2 [...   200   2e-51

>ref|NP_002083.3| G-rich sequence factor 1 isoform 1 [Homo sapiens].
          Length = 480

 Score =  603 bits (1556), Expect = e-173
 Identities = 305/340 (89%), Positives = 316/340 (92%), Gaps = 1/340 (0%)
 Frame = +1

Query: 70   ESKTTXXXXXXXXXXXXXXXSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGE 249
            ESKTT               SKL EEVDDV+LIRAQGLPWSCT+EDVL+FFSDCRIRNGE
Sbjct: 120  ESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGE 179

Query: 250  NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNL 429
            NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMK+L
Sbjct: 180  NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 239

Query: 430  HVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEE 609
             VKS+PVVNDGVVRLRGLPYSCNEKDIVDFFAGL+IVDITFVMDYRGRRKTGEAYVQFEE
Sbjct: 240  QVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEE 299

Query: 610  PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEE 789
            PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGS+KGKK+AS PTAKYITEPEM FEE
Sbjct: 300  PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 359

Query: 790  -EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIIN 966
             EVNED++PMTAFESEKEIELPKE+ EKLPEA DFGTTSSLHFVHMRGLPFQANAQDIIN
Sbjct: 360  HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 419

Query: 967  FFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            FFAPLKPVRITMEYSSSGKATGEADVHFET  DAVAAMLK
Sbjct: 420  FFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLK 459



 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 56/228 (24%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 339
           ++R +GLP+SC  +D++ FF+   I +    I F+++  G+R+ G+A ++ E  +   +A
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 306

Query: 340 LEKHRMYMGQRYVEVYEINNEDVDALM---KNLHVKSTPV---------------VNDGV 465
           L KHR  +G RY+E++     +V   +   K   + S P                VN+ +
Sbjct: 307 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 366

Query: 466 ------------------------------------VRLRGLPYSCNEKDIVDFFAGLHI 537
                                               V +RGLP+  N +DI++FFA L  
Sbjct: 367 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKP 426

Query: 538 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 678
           V IT  M+Y    K TGEA V FE  E A  A+LK R  + +RYIE+F
Sbjct: 427 VRIT--MEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 472


>ref|NP_001091947.1| G-rich sequence factor 1 isoform 2 [Homo sapiens].
          Length = 318

 Score =  557 bits (1435), Expect = e-159
 Identities = 279/297 (93%), Positives = 289/297 (97%), Gaps = 1/297 (0%)
 Frame = +1

Query: 199  VEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 378
            +EDVL+FFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV
Sbjct: 1    MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60

Query: 379  EVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVM 558
            EVYEINNEDVDALMK+L VKS+PVVNDGVVRLRGLPYSCNEKDIVDFFAGL+IVDITFVM
Sbjct: 61   EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 120

Query: 559  DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMA 738
            DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGS+KGKK+A
Sbjct: 121  DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA 180

Query: 739  SSPTAKYITEPEMAFEE-EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHF 915
            S PTAKYITEPEM FEE EVNED++PMTAFESEKEIELPKE+ EKLPEA DFGTTSSLHF
Sbjct: 181  SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF 240

Query: 916  VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFET  DAVAAMLK
Sbjct: 241  VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLK 297



 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 56/228 (24%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 339
           ++R +GLP+SC  +D++ FF+   I +    I F+++  G+R+ G+A ++ E  +   +A
Sbjct: 89  VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144

Query: 340 LEKHRMYMGQRYVEVYEINNEDVDALM---KNLHVKSTPV---------------VNDGV 465
           L KHR  +G RY+E++     +V   +   K   + S P                VN+ +
Sbjct: 145 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 204

Query: 466 ------------------------------------VRLRGLPYSCNEKDIVDFFAGLHI 537
                                               V +RGLP+  N +DI++FFA L  
Sbjct: 205 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKP 264

Query: 538 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 678
           V IT  M+Y    K TGEA V FE  E A  A+LK R  + +RYIE+F
Sbjct: 265 VRIT--MEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310


>ref|NP_001091676.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  234 bits (598), Expect = 8e-62
 Identities = 141/348 (40%), Positives = 204/348 (58%), Gaps = 31/348 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+VEDV +F SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3    LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMA------FEEEVNEDVRP---MTA 822
            E+F S + EVR++  S    K  S         P  A       ++   E +RP    T 
Sbjct: 182  EVFKSSQEEVRSY--SDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTG 239

Query: 823  FESEKEIE------------LPKEMSEKLPEAVD--FG------TTSSLHFVHMRGLPFQ 942
            +   +E                +++S  L    D  +G       +++ H VHMRGLP++
Sbjct: 240  YGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYK 299

Query: 943  ANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            A   DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 300  ATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001091674.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  234 bits (598), Expect = 8e-62
 Identities = 141/348 (40%), Positives = 204/348 (58%), Gaps = 31/348 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+VEDV +F SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3    LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMA------FEEEVNEDVRP---MTA 822
            E+F S + EVR++  S    K  S         P  A       ++   E +RP    T 
Sbjct: 182  EVFKSSQEEVRSY--SDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTG 239

Query: 823  FESEKEIE------------LPKEMSEKLPEAVD--FG------TTSSLHFVHMRGLPFQ 942
            +   +E                +++S  L    D  +G       +++ H VHMRGLP++
Sbjct: 240  YGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYK 299

Query: 943  ANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            A   DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 300  ATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001091675.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  234 bits (598), Expect = 8e-62
 Identities = 141/348 (40%), Positives = 204/348 (58%), Gaps = 31/348 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+VEDV +F SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3    LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMA------FEEEVNEDVRP---MTA 822
            E+F S + EVR++  S    K  S         P  A       ++   E +RP    T 
Sbjct: 182  EVFKSSQEEVRSY--SDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTG 239

Query: 823  FESEKEIE------------LPKEMSEKLPEAVD--FG------TTSSLHFVHMRGLPFQ 942
            +   +E                +++S  L    D  +G       +++ H VHMRGLP++
Sbjct: 240  YGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYK 299

Query: 943  ANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            A   DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 300  ATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001091677.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  234 bits (598), Expect = 8e-62
 Identities = 141/348 (40%), Positives = 204/348 (58%), Gaps = 31/348 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+VEDV +F SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3    LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMA------FEEEVNEDVRP---MTA 822
            E+F S + EVR++  S    K  S         P  A       ++   E +RP    T 
Sbjct: 182  EVFKSSQEEVRSY--SDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTG 239

Query: 823  FESEKEIE------------LPKEMSEKLPEAVD--FG------TTSSLHFVHMRGLPFQ 942
            +   +E                +++S  L    D  +G       +++ H VHMRGLP++
Sbjct: 240  YGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYK 299

Query: 943  ANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            A   DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 300  ATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001091678.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  234 bits (598), Expect = 8e-62
 Identities = 141/348 (40%), Positives = 204/348 (58%), Gaps = 31/348 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+VEDV +F SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3    LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMA------FEEEVNEDVRP---MTA 822
            E+F S + EVR++  S    K  S         P  A       ++   E +RP    T 
Sbjct: 182  EVFKSSQEEVRSY--SDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTG 239

Query: 823  FESEKEIE------------LPKEMSEKLPEAVD--FG------TTSSLHFVHMRGLPFQ 942
            +   +E                +++S  L    D  +G       +++ H VHMRGLP++
Sbjct: 240  YGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYK 299

Query: 943  ANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            A   DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 300  ATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_004957.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  234 bits (598), Expect = 8e-62
 Identities = 141/348 (40%), Positives = 204/348 (58%), Gaps = 31/348 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+VEDV +F SDC I +G  G+HF+  R+G++ G+A +E+ 
Sbjct: 3    LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELG 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMA------FEEEVNEDVRP---MTA 822
            E+F S + EVR++  S    K  S         P  A       ++   E +RP    T 
Sbjct: 182  EVFKSSQEEVRSY--SDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTG 239

Query: 823  FESEKEIE------------LPKEMSEKLPEAVD--FG------TTSSLHFVHMRGLPFQ 942
            +   +E                +++S  L    D  +G       +++ H VHMRGLP++
Sbjct: 240  YGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYK 299

Query: 943  ANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            A   DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 300  ATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_005511.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens].
          Length = 449

 Score =  203 bits (517), Expect = 2e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


>ref|NP_001027565.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens].
          Length = 449

 Score =  200 bits (509), Expect = 2e-51
 Identities = 96/193 (49%), Positives = 142/193 (73%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           L  E  + ++++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+  R+G+  G+A +E+E
Sbjct: 3   LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE++V+ AL+K R  MG RYVEV++ N+ ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   +T  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGMTLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 35/59 (59%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL P+R+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ + +   +   GR  TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGR-VTGEADVEFATHEDAVAAMAKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,566,721
Number of extensions: 1083653
Number of successful extensions: 3571
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3393
Number of HSP's successfully gapped: 85
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003643
         (1087 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001091946.1| G-rich sequence factor 1 isoform 2 [Mus musc...   602   e-172
Alignment   gi|NP_848815.2| G-rich sequence factor 1 isoform 1 [Mus musculu...   600   e-172
Alignment   gi|NP_001159904.1| heterogeneous nuclear ribonucleoprotein F [M...   230   2e-60
Alignment   gi|NP_001159903.1| heterogeneous nuclear ribonucleoprotein F [M...   230   2e-60
Alignment   gi|NP_001159902.1| heterogeneous nuclear ribonucleoprotein F [M...   230   2e-60
Alignment   gi|NP_001159901.1| heterogeneous nuclear ribonucleoprotein F [M...   230   2e-60
Alignment   gi|NP_001159900.1| heterogeneous nuclear ribonucleoprotein F [M...   230   2e-60
Alignment   gi|NP_001159899.1| heterogeneous nuclear ribonucleoprotein F [M...   230   2e-60
Alignment   gi|NP_598595.1| heterogeneous nuclear ribonucleoprotein F [Mus ...   230   2e-60
Alignment   gi|NP_067485.1| heterogeneous nuclear ribonucleoprotein H [Mus ...   203   2e-52

>ref|NP_001091946.1| G-rich sequence factor 1 isoform 2 [Mus musculus].
          Length = 362

 Score =  602 bits (1552), Expect = e-172
 Identities = 303/341 (88%), Positives = 314/341 (92%), Gaps = 1/341 (0%)
 Frame = +1

Query: 67   MESKTTXXXXXXXXXXXXXXXSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNG 246
            MESKTT               SKLG+EVDDVYLIRAQGLPWSCTVEDVL+FFSDCRIRN 
Sbjct: 1    MESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNS 60

Query: 247  ENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKN 426
            ENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMK+
Sbjct: 61   ENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKS 120

Query: 427  LHVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFE 606
            L VK +PV++DGVVRLRGLPYSCNEKDIVDFFAGL+IVDITFVMDYRGRRKTGEAYVQFE
Sbjct: 121  LQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFE 180

Query: 607  EPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFE 786
            EPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKM SSP  KYITEPE+ FE
Sbjct: 181  EPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFE 240

Query: 787  E-EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDII 963
            E EVNED+RPMTAFES+KEIELPKEMSEKLPEAVDFGT  SLHFVHMRGLPFQANAQDII
Sbjct: 241  EHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDII 300

Query: 964  NFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            NFFAPLKPVRITMEYSSSGKATGEADVHF+T  DAVAAMLK
Sbjct: 301  NFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLK 341



 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 56/228 (24%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 339
           ++R +GLP+SC  +D++ FF+   I +    I F+++  G+R+ G+A ++ E  +   +A
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 188

Query: 340 LEKHRMYMGQRYVEVYEIN-------------------------------------NEDV 408
           L KHR  +G RY+E++                                        NED+
Sbjct: 189 LLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDI 248

Query: 409 DA-----------LMKNLHVKSTPVVNDGV------VRLRGLPYSCNEKDIVDFFAGLHI 537
                        L K +  K    V+ G       V +RGLP+  N +DI++FFA L  
Sbjct: 249 RPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKP 308

Query: 538 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 678
           V IT  M+Y    K TGEA V F+  E A  A+LK R  + +RYIE+F
Sbjct: 309 VRIT--MEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 354


>ref|NP_848815.2| G-rich sequence factor 1 isoform 1 [Mus musculus].
          Length = 479

 Score =  600 bits (1547), Expect = e-172
 Identities = 302/340 (88%), Positives = 313/340 (92%), Gaps = 1/340 (0%)
 Frame = +1

Query: 70   ESKTTXXXXXXXXXXXXXXXSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGE 249
            ESKTT               SKLG+EVDDVYLIRAQGLPWSCTVEDVL+FFSDCRIRN E
Sbjct: 119  ESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSE 178

Query: 250  NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNL 429
            NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMK+L
Sbjct: 179  NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSL 238

Query: 430  HVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEE 609
             VK +PV++DGVVRLRGLPYSCNEKDIVDFFAGL+IVDITFVMDYRGRRKTGEAYVQFEE
Sbjct: 239  QVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEE 298

Query: 610  PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEE 789
            PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKM SSP  KYITEPE+ FEE
Sbjct: 299  PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEE 358

Query: 790  -EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIIN 966
             EVNED+RPMTAFES+KEIELPKEMSEKLPEAVDFGT  SLHFVHMRGLPFQANAQDIIN
Sbjct: 359  HEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIIN 418

Query: 967  FFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            FFAPLKPVRITMEYSSSGKATGEADVHF+T  DAVAAMLK
Sbjct: 419  FFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLK 458



 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 56/228 (24%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 339
           ++R +GLP+SC  +D++ FF+   I +    I F+++  G+R+ G+A ++ E  +   +A
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 305

Query: 340 LEKHRMYMGQRYVEVYEIN-------------------------------------NEDV 408
           L KHR  +G RY+E++                                        NED+
Sbjct: 306 LLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDI 365

Query: 409 DA-----------LMKNLHVKSTPVVNDGV------VRLRGLPYSCNEKDIVDFFAGLHI 537
                        L K +  K    V+ G       V +RGLP+  N +DI++FFA L  
Sbjct: 366 RPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKP 425

Query: 538 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 678
           V IT  M+Y    K TGEA V F+  E A  A+LK R  + +RYIE+F
Sbjct: 426 VRIT--MEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELF 471


>ref|NP_001159904.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  230 bits (586), Expect = 2e-60
 Identities = 135/346 (39%), Positives = 194/346 (56%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + Y+++ +GLPWSC++EDV +F SDC I +G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G+  TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEGKI-TGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPS-------------------------RRNEVRTHVGSHKGKKMASSPTAKYITEPE 774
            E+F S                         R    R ++G  K   +    +  Y     
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYG 241

Query: 775  MAFEEEVNEDVRPMTA--FESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQAN 948
               E     D    T   F  +    L      +  ++     +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001159903.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  230 bits (586), Expect = 2e-60
 Identities = 135/346 (39%), Positives = 194/346 (56%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + Y+++ +GLPWSC++EDV +F SDC I +G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G+  TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEGKI-TGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPS-------------------------RRNEVRTHVGSHKGKKMASSPTAKYITEPE 774
            E+F S                         R    R ++G  K   +    +  Y     
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYG 241

Query: 775  MAFEEEVNEDVRPMTA--FESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQAN 948
               E     D    T   F  +    L      +  ++     +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001159902.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  230 bits (586), Expect = 2e-60
 Identities = 135/346 (39%), Positives = 194/346 (56%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + Y+++ +GLPWSC++EDV +F SDC I +G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G+  TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEGKI-TGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPS-------------------------RRNEVRTHVGSHKGKKMASSPTAKYITEPE 774
            E+F S                         R    R ++G  K   +    +  Y     
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYG 241

Query: 775  MAFEEEVNEDVRPMTA--FESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQAN 948
               E     D    T   F  +    L      +  ++     +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001159901.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  230 bits (586), Expect = 2e-60
 Identities = 135/346 (39%), Positives = 194/346 (56%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + Y+++ +GLPWSC++EDV +F SDC I +G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G+  TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEGKI-TGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPS-------------------------RRNEVRTHVGSHKGKKMASSPTAKYITEPE 774
            E+F S                         R    R ++G  K   +    +  Y     
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYG 241

Query: 775  MAFEEEVNEDVRPMTA--FESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQAN 948
               E     D    T   F  +    L      +  ++     +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001159900.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  230 bits (586), Expect = 2e-60
 Identities = 135/346 (39%), Positives = 194/346 (56%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + Y+++ +GLPWSC++EDV +F SDC I +G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G+  TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEGKI-TGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPS-------------------------RRNEVRTHVGSHKGKKMASSPTAKYITEPE 774
            E+F S                         R    R ++G  K   +    +  Y     
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYG 241

Query: 775  MAFEEEVNEDVRPMTA--FESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQAN 948
               E     D    T   F  +    L      +  ++     +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_001159899.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  230 bits (586), Expect = 2e-60
 Identities = 135/346 (39%), Positives = 194/346 (56%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + Y+++ +GLPWSC++EDV +F SDC I +G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G+  TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEGKI-TGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPS-------------------------RRNEVRTHVGSHKGKKMASSPTAKYITEPE 774
            E+F S                         R    R ++G  K   +    +  Y     
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYG 241

Query: 775  MAFEEEVNEDVRPMTA--FESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQAN 948
               E     D    T   F  +    L      +  ++     +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_598595.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  230 bits (586), Expect = 2e-60
 Identities = 135/346 (39%), Positives = 194/346 (56%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + Y+++ +GLPWSC++EDV +F SDC I +G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G+  TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEGKI-TGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPS-------------------------RRNEVRTHVGSHKGKKMASSPTAKYITEPE 774
            E+F S                         R    R ++G  K   +    +  Y     
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYG 241

Query: 775  MAFEEEVNEDVRPMTA--FESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQAN 948
               E     D    T   F  +    L      +  ++     +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   GR  TGEA V+F   E A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGR-VTGEADVEFATHEEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|NP_067485.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus].
          Length = 449

 Score =  203 bits (517), Expect = 2e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGAEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 7e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,595,851
Number of extensions: 926437
Number of successful extensions: 3013
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2888
Number of HSP's successfully gapped: 56
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003643
         (1087 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003129120.1| PREDICTED: g-rich sequence factor 1-like [Su...   634   0.0  
Alignment   gi|XP_001929089.1| PREDICTED: heterogeneous nuclear ribonucleop...   239   3e-63
Alignment   gi|XP_003359253.1| PREDICTED: heterogeneous nuclear ribonucleop...   239   3e-63
Alignment   gi|XP_003123691.1| PREDICTED: heterogeneous nuclear ribonucleop...   203   1e-52
Alignment   gi|XP_003361999.1| PREDICTED: heterogeneous nuclear ribonucleop...   182   2e-46
Alignment   gi|XP_003355068.1| PREDICTED: epithelial splicing regulatory pr...   126   2e-29
Alignment   gi|XP_003125612.2| PREDICTED: epithelial splicing regulatory pr...   126   2e-29
Alignment   gi|NP_001230484.1| heterogeneous nuclear ribonucleoprotein H3 [...    99   5e-21
Alignment   gi|XP_003360011.1| PREDICTED: RNA-binding protein 12 [Sus scrof...    88   7e-18
Alignment   gi|XP_003125614.1| PREDICTED: RNA-binding protein 12B [Sus scro...    77   2e-14

>ref|XP_003129120.1| PREDICTED: g-rich sequence factor 1-like [Sus scrofa].
          Length = 479

 Score =  634 bits (1636), Expect = 0.0
 Identities = 322/340 (94%), Positives = 322/340 (94%), Gaps = 1/340 (0%)
 Frame = +1

Query: 70   ESKTTXXXXXXXXXXXXXXXSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGE 249
            ESKTT               SKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGE
Sbjct: 119  ESKTTYLEDLPPLPEYELPPSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGE 178

Query: 250  NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNL 429
            NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNL
Sbjct: 179  NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNL 238

Query: 430  HVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEE 609
            HVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEE
Sbjct: 239  HVKSTPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEE 298

Query: 610  PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEE 789
            PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEE
Sbjct: 299  PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEE 358

Query: 790  -EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIIN 966
             EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIIN
Sbjct: 359  NEVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIIN 418

Query: 967  FFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            FFAPLKPVRITMEYSSSGKATGEADVHFET  DAVAAMLK
Sbjct: 419  FFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLK 458



 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 56/228 (24%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 339
           ++R +GLP+SC  +D++ FF+   I +    I F+++  G+R+ G+A ++ E  +   +A
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLHIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 305

Query: 340 LEKHRMYMGQRYVEVYEIN-------------------------------------NEDV 408
           L KHR  +G RY+E++                                        NEDV
Sbjct: 306 LLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEENEVNEDV 365

Query: 409 DA-----------LMKNLHVKSTPVVNDGV------VRLRGLPYSCNEKDIVDFFAGLHI 537
                        L K +  K    V+ G       V +RGLP+  N +DI++FFA L  
Sbjct: 366 RPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKP 425

Query: 538 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 678
           V IT  M+Y    K TGEA V FE  E A  A+LK R  + +RYIE+F
Sbjct: 426 VRIT--MEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 471


>ref|XP_001929089.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Sus
            scrofa].
          Length = 414

 Score =  239 bits (609), Expect = 3e-63
 Identities = 140/346 (40%), Positives = 202/346 (58%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+VEDV +F SDC IR+G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVG--------SHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAF 825
            E+F S + EVR++             G         +YI   + A  E +          
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRSGAYSAGYG 241

Query: 826  ESEKEIELP-----------KEMSEKLPEAVD--FG------TTSSLHFVHMRGLPFQAN 948
              E+   L            +++S  L    D  +G       +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSK 347



 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 30/71 (42%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   + A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHDEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|XP_003359253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa].
          Length = 414

 Score =  239 bits (609), Expect = 3e-63
 Identities = 140/346 (40%), Positives = 202/346 (58%), Gaps = 29/346 (8%)
 Frame = +1

Query: 136  LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
            LG E  + ++++ +GLPWSC+VEDV +F SDC IR+G  G+HF+  R+G++ G+A +E+E
Sbjct: 3    LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELE 62

Query: 316  SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
            SE DV+ AL+K R  MG RY+EV++ +  ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63   SEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGC 122

Query: 496  NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
             +++IV FF+GL IV   IT  +D  G + TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123  TKEEIVQFFSGLEIVPNGITLPVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYI 181

Query: 670  EIFPSRRNEVRTHVG--------SHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAF 825
            E+F S + EVR++             G         +YI   + A  E +          
Sbjct: 182  EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRSGAYSAGYG 241

Query: 826  ESEKEIELP-----------KEMSEKLPEAVD--FG------TTSSLHFVHMRGLPFQAN 948
              E+   L            +++S  L    D  +G       +++ H VHMRGLP++A 
Sbjct: 242  GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVHMRGLPYKAT 301

Query: 949  AQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
              DI NFF+PL PVR+ +E    G+ TGEADV F T  +AVAAM K
Sbjct: 302  ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSK 347



 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 30/71 (42%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   + A  A+ K R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHDEAVAAMSKDR 349

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 350 ANMQHRYIELF 360


>ref|XP_003123691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sus scrofa].
          Length = 449

 Score =  203 bits (517), Expect = 1e-52
 Identities = 99/193 (51%), Positives = 140/193 (72%), Gaps = 2/193 (1%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           LG E  + ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+E
Sbjct: 3   LGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYI 669
           ++++IV FF+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYI
Sbjct: 123 SKEEIVQFFSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYI 181

Query: 670 EIFPSRRNEVRTH 708
           EIF S R EVRTH
Sbjct: 182 EIFKSSRAEVRTH 194



 Score = 75.5 bits (184), Expect = 5e-14
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 289  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 350 ANMQHRYVELF 360


>ref|XP_003361999.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Sus
           scrofa].
          Length = 444

 Score =  182 bits (463), Expect = 2e-46
 Identities = 89/191 (46%), Positives = 130/191 (68%)
 Frame = +1

Query: 136 LGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEME 315
           L  E  + ++++ +GLPWSC+ ++V+ FFSDC+I+NG +GI F+  R+G+  G+A +E+E
Sbjct: 3   LSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62

Query: 316 SEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSC 495
           SE +V+ AL+K R  MG RYVEV++ N+ ++D ++K+    S    NDG VRLRGLP+ C
Sbjct: 63  SEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGC 122

Query: 496 NEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEI 675
           ++++IV FF+GL IV                A+VQF   E+A +AL KH+E IG+RYIEI
Sbjct: 123 SKEEIVQFFSGLEIVP----NGMXXXXXXXXAFVQFASQEIAEKALKKHKERIGHRYIEI 178

Query: 676 FPSRRNEVRTH 708
           F S R EVRTH
Sbjct: 179 FKSSRAEVRTH 189



 Score = 74.7 bits (182), Expect = 8e-14
 Identities = 35/59 (59%), Positives = 42/59 (71%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            H VHMRGLP++A   DI NFF+PL P+R+ +E    G+ TGEADV F T  DAVAAM K
Sbjct: 284  HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 342



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLPY   E DI +FF+ L+ + +   +   GR  TGEA V+F   E A  A+ K +
Sbjct: 286 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGR-VTGEADVEFATHEDAVAAMAKDK 344

Query: 646 EEIGNRYIEIF 678
             + +RY+E+F
Sbjct: 345 ANMQHRYVELF 355


>ref|XP_003355068.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
            [Sus scrofa].
          Length = 608

 Score =  126 bits (316), Expect = 2e-29
 Identities = 97/328 (29%), Positives = 154/328 (46%), Gaps = 13/328 (3%)
 Frame = +1

Query: 142  EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 321
            E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R G+AL+   SE
Sbjct: 219  ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSE 276

Query: 322  QDVQKALEKHRMYMGQRYVEVYEINNED---VDALMKNLHVKSTPVVNDGVVRLRGLPYS 492
            +    AL++H+ +MG RY+EVY+   ED   +     N   +     N  +VR+RGLP++
Sbjct: 277  EHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFT 336

Query: 493  CNEKDIVDFFAGLHI------VDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 654
                ++V FF G H         I FV  Y   R TG+A+V F   E A  AL KH++ +
Sbjct: 337  ATADEVVAFF-GQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLL 394

Query: 655  GNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAFESE 834
            G RYIE+F S   EV+  +      + +S+P     T P           + P+      
Sbjct: 395  GKRYIELFRSTAAEVQQVL-----NRFSSAPLIPLPTPP-----------IIPV------ 432

Query: 835  KEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITM 1002
                LP++             T+    + +RGLP+ A  +DI++F       ++   + M
Sbjct: 433  ----LPQQF---------VTPTNVRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHM 479

Query: 1003 EYSSSGKATGEADVHFETP*DAVAAMLK 1086
              +  G+ +G+A +  ++   A  A  K
Sbjct: 480  VLNHQGRPSGDAFIQMKSADRAFMAAQK 507



 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 24/203 (11%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 339
           ++R +GLP++ T ++V++FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 340 LEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKS------------------TPVVNDGV 465
           L KH+  +G+RY+E++     +V  ++                         TP      
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVTPTNVRDC 446

Query: 466 VRLRGLPYSCNEKDIVDFFA----GLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 633
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 634 LK-HREEIGNRYIEIFPSRRNEV 699
            K H++ + +RY+E+F     E+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEM 528



 Score = 64.7 bits (156), Expect = 9e-11
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +1

Query: 166 IRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 345
           IR +GLP++ T+ED+L F  +       +G+H +LN  G+  GDA I+M+S      A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 346 K-HRMYMGQRYVEVYEINNEDVDALM 420
           K H+  M  RYVEV++ + E+++ ++
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532


>ref|XP_003125612.2| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
            [Sus scrofa].
          Length = 681

 Score =  126 bits (316), Expect = 2e-29
 Identities = 97/328 (29%), Positives = 154/328 (46%), Gaps = 13/328 (3%)
 Frame = +1

Query: 142  EEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESE 321
            E +DD  ++RA+GLPW  + +D+  FF    I  G  G    LN  G+R G+AL+   SE
Sbjct: 219  ELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSE 276

Query: 322  QDVQKALEKHRMYMGQRYVEVYEINNED---VDALMKNLHVKSTPVVNDGVVRLRGLPYS 492
            +    AL++H+ +MG RY+EVY+   ED   +     N   +     N  +VR+RGLP++
Sbjct: 277  EHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKENQVIVRMRGLPFT 336

Query: 493  CNEKDIVDFFAGLHI------VDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 654
                ++V FF G H         I FV  Y   R TG+A+V F   E A  AL KH++ +
Sbjct: 337  ATADEVVAFF-GQHCPITGGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLL 394

Query: 655  GNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMTAFESE 834
            G RYIE+F S   EV+  +      + +S+P     T P           + P+      
Sbjct: 395  GKRYIELFRSTAAEVQQVL-----NRFSSAPLIPLPTPP-----------IIPV------ 432

Query: 835  KEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITM 1002
                LP++             T+    + +RGLP+ A  +DI++F       ++   + M
Sbjct: 433  ----LPQQF---------VTPTNVRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHM 479

Query: 1003 EYSSSGKATGEADVHFETP*DAVAAMLK 1086
              +  G+ +G+A +  ++   A  A  K
Sbjct: 480  VLNHQGRPSGDAFIQMKSADRAFMAAQK 507



 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 58/203 (28%), Positives = 104/203 (51%), Gaps = 24/203 (11%)
 Frame = +1

Query: 163 LIRAQGLPWSCTVEDVLSFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 339
           ++R +GLP++ T ++V++FF   C I  G+ GI F+   DG+  GDA +    E+  Q A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 340 LEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKS------------------TPVVNDGV 465
           L KH+  +G+RY+E++     +V  ++                         TP      
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVTPTNVRDC 446

Query: 466 VRLRGLPYSCNEKDIVDFFA----GLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQAL 633
           +RLRGLPY+   +DI+DF       +    +  V++++GR  +G+A++Q +  + A  A 
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAA 505

Query: 634 LK-HREEIGNRYIEIFPSRRNEV 699
            K H++ + +RY+E+F     E+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEM 528



 Score = 64.7 bits (156), Expect = 9e-11
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +1

Query: 166 IRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 345
           IR +GLP++ T+ED+L F  +       +G+H +LN  G+  GDA I+M+S      A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 346 K-HRMYMGQRYVEVYEINNEDVDALM 420
           K H+  M  RYVEV++ + E+++ ++
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532


>ref|NP_001230484.1| heterogeneous nuclear ribonucleoprotein H3 [Sus scrofa].
          Length = 346

 Score = 98.6 bits (244), Expect = 5e-21
 Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
 Frame = +1

Query: 454 NDGVVRLRGLPYSCNEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 627
           +DG VRLRGLP+ C++++IV FF GL IV   IT  MDY+GR  TGEA+VQF   E+A  
Sbjct: 14  SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGR-STGEAFVQFASKEIAEN 72

Query: 628 ALLKHREEIGNRYIEIFPSRRNEVR 702
           AL KH+E IG+RYIEIF S R+E++
Sbjct: 73  ALGKHKERIGHRYIEIFRSSRSEIK 97



 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 37/59 (62%), Positives = 45/59 (76%)
 Frame = +1

Query: 910  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            HFVHMRGLPF+A   DI NFF+PL P+R+ ++  + G+ATGEADV F T  DAVAAM K
Sbjct: 195  HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSK 253



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 24/81 (29%), Positives = 48/81 (59%)
 Frame = +1

Query: 166 IRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 345
           +R +GLP+ C+ E+++ FF    I    NGI   ++  G+  G+A ++  S++  + AL 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75

Query: 346 KHRMYMGQRYVEVYEINNEDV 408
           KH+  +G RY+E++  +  ++
Sbjct: 76  KHKERIGHRYIEIFRSSRSEI 96



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +1

Query: 466 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           V +RGLP+   E DI +FF+ L+ + +   +   GR  TGEA V+F   E A  A+ K +
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRA-TGEADVEFVTHEDAVAAMSKDK 255

Query: 646 EEIGNRYIEIF 678
             + +RYIE+F
Sbjct: 256 NNMQHRYIELF 266


>ref|XP_003360011.1| PREDICTED: RNA-binding protein 12 [Sus scrofa].
          Length = 762

 Score = 88.2 bits (217), Expect = 7e-18
 Identities = 83/339 (24%), Positives = 140/339 (41%), Gaps = 33/339 (9%)
 Frame = +1

Query: 151  DDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDV 330
            DD+Y +   G+P+S    DV  FF   R+    + +H L +  G+  G+ L++  S QD 
Sbjct: 141  DDLY-VSVHGMPFSAVENDVREFFHGLRV----DAVHLLKDHVGRNNGNGLVKFLSPQDT 195

Query: 331  QKALEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKS----------------------- 441
             +AL+++RM M QRYVEV         A   ++  K                        
Sbjct: 196  FEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSG 255

Query: 442  -------TPVVNDGVVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRK-TGEAYV 597
                   +P      V L+GLP+    K ++DFF  L IV+ +  + Y    K TGE +V
Sbjct: 256  QKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFV 315

Query: 598  QFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEM 777
            +F        AL +H++ +GNR+I++ P                          IT+  M
Sbjct: 316  EFRNEADYKAALCRHKQYMGNRFIQVHP--------------------------ITKKGM 349

Query: 778  AFEEEVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQD 957
               E+++   + +  F  ++     +EM    PE       S+    H+  +PF     D
Sbjct: 350  L--EKIDMIRKRLQNFSYDQ-----REMMLN-PEG---DVNSAKVCAHITNIPFSVTKMD 398

Query: 958  IINFF--APLKPVRITMEYSSSGKATGEADVHFETP*DA 1068
            ++ F    P+    + +   ++G+  G+A V F+   DA
Sbjct: 399  VLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 437



 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 3/221 (1%)
 Frame = +1

Query: 433  VKSTPVVNDGV-VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEE 609
            VK  P+  D + V + G+P+S  E D+ +FF GL +  +  + D+ G R  G   V+F  
Sbjct: 133  VKPLPINPDDLYVSVHGMPFSAVENDVREFFHGLRVDAVHLLKDHVG-RNNGNGLVKFLS 191

Query: 610  PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEE 789
            P+   +AL ++R  +  RY+E+ P+   +     G H   K +  P+ +  T P      
Sbjct: 192  PQDTFEALKRNRMLMIQRYVEVSPATERQ-WVAAGGHITFKQSIGPSGQ--THP------ 242

Query: 790  EVNEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINF 969
                   P       K     K    + P    F        V+++GLPF+A  + +I+F
Sbjct: 243  -------PPQTLPRSKSPSGQKRSRSRSPHEAGF-------CVYLKGLPFEAENKHVIDF 288

Query: 970  FAPLKPVR--ITMEYSSSGKATGEADVHFETP*DAVAAMLK 1086
            F  L  V   I + Y  +GKATGE  V F    D  AA+ +
Sbjct: 289  FKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 329



 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
 Frame = +1

Query: 160 YLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 339
           + +  +GLP+    + V+ FF    I   E+ I+     +GK  G+  +E  +E D + A
Sbjct: 269 FCVYLKGLPFEAENKHVIDFFKKLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADYKAA 326

Query: 340 LEKHRMYMGQRYVEVYEINN----EDVDALMKNLH----------VKSTPVVNDGVV--R 471
           L +H+ YMG R+++V+ I      E +D + K L           +     VN   V   
Sbjct: 327 LCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKVCAH 386

Query: 472 LRGLPYSCNEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 645
           +  +P+S  + D++ F  G+ + +  +  ++D  G +  G+A VQF+  + A ++   HR
Sbjct: 387 ITNIPFSVTKMDVLQFLEGIPVDENAVHVLVDNNG-QGLGQALVQFKNEDDARKSERLHR 445

Query: 646 EEIGNR 663
           +++  R
Sbjct: 446 KKLNGR 451



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 26/82 (31%), Positives = 45/82 (54%)
 Frame = +1

Query: 181 LPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMY 360
           +P+S T  DVL F     +   EN +H L++ +G+  G AL++ ++E D +K+   HR  
Sbjct: 390 IPFSVTKMDVLQFLEGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKK 447

Query: 361 MGQRYVEVYEINNEDVDALMKN 426
           +  R   V+ +  ED+  + KN
Sbjct: 448 LNGREAFVHVVTLEDMREIEKN 469


>ref|XP_003125614.1| PREDICTED: RNA-binding protein 12B [Sus scrofa].
          Length = 986

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 35/336 (10%)
 Frame = +1

Query: 175  QGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 354
            +GLP+    +DV  FFS   +    +G+ FL + DG+  GDA+++  S  D    L+ HR
Sbjct: 160  RGLPYLVNEDDVRVFFSGLCV----DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHR 215

Query: 355  MYMGQRYVEVYEINNE-----------DVDALMKNLHVKSTPVVNDG------------- 462
             +MG R++EV + + +           + D  M+         +ND              
Sbjct: 216  SFMGSRFIEVMQGSEQQWIEFGGNAMKEDDIPMRTEEHSQPRGINDRHFRKRSHSKSPRR 275

Query: 463  ---------VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPE 615
                      V L+ L  S N++D+ +FF    + +      Y+  R+T  A+V F+  +
Sbjct: 276  TRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLK 335

Query: 616  MANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEV 795
              N AL  H+  +  R + I P  R ++   +  ++ K+ AS                  
Sbjct: 336  DYNTALGLHKTVLQYRPVHIDPVSRKQMLKFIECYEKKRPAS------------------ 377

Query: 796  NEDVRPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFA 975
                      E EK   + ++ S++       G +     +++R  PF     ++  FFA
Sbjct: 378  ---------IEKEKLGHISQKYSQE-------GYSGQKLCIYIRNFPFDVTKVEVQKFFA 421

Query: 976  --PLKPVRITMEYSSSGKATGEADVHFETP*DAVAA 1077
               L    I + Y   G   GEA V F++   A+ A
Sbjct: 422  DFSLAEDDIYLLYDDKGIGLGEALVKFKSEEQAMKA 457



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 2/169 (1%)
 Frame = +1

Query: 472 LRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREE 651
           LRGLPY  NE D+  FF+GL +  + F+  + G R  G+A V+F     A+  L  HR  
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDG-RNNGDAIVKFASCIDASGGLKCHRSF 217

Query: 652 IGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEEVNEDVRPMT--AF 825
           +G+R+IE+      +     G+              + E ++    E +   R +    F
Sbjct: 218 MGSRFIEVMQGSEQQWIEFGGN-------------AMKEDDIPMRTEEHSQPRGINDRHF 264

Query: 826 ESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFF 972
                 + P+    + P            +VH++ L    N +D+ NFF
Sbjct: 265 RKRSHSKSPRRTRSRSPLG---------FYVHLKNLSLSINKRDLRNFF 304


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,888,476
Number of extensions: 669606
Number of successful extensions: 2302
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2223
Number of HSP's successfully gapped: 32
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003643
         (1087 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                         341   5e-91

>Sscrofa_Chr08 
||          Length = 148491826

 Score =  341 bits (172), Expect = 5e-91
 Identities = 183/186 (98%), Gaps = 3/186 (1%)
 Strand = Plus / Minus

                                                                            
Query: 662      gatatatagagatatttccaagcagaaggaatgaagttcgaacacatgttggttctcata 721
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71505221 gatatatagagatatttccaagcagaaggaatgaagttcgaacacatgttggttctcata 71505162

                                                                            
Query: 722      agggaaagaaaatggcctcttctcccactgctaagtacataactgagccagaaatggcct 781
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71505161 agggaaagaaaatggcctcttctcccactgctaagtacataactgagccagaaatggcct 71505102

                                                                            
Query: 782      ttgaagaa---gaagtaaatgaggatgtccgacccatgacagcttttgaaagtgaaaagg 838
                ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71505101 ttgaagaaaatgaagtaaatgaggatgtccgacccatgacagcttttgaaagtgaaaagg 71505042

                      
Query: 839      aaatag 844
                ||||||
Sbjct: 71505041 aaatag 71505036



 Score =  317 bits (160), Expect = 7e-84
 Identities = 160/160 (100%)
 Strand = Plus / Minus

                                                                            
Query: 223      tcagactgcagaattcgaaatggtgagaatggaatccacttccttttaaatagagatggg 282
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71509891 tcagactgcagaattcgaaatggtgagaatggaatccacttccttttaaatagagatggg 71509832

                                                                            
Query: 283      aaacgaagaggtgatgccttaattgaaatggagtcagagcaggacgtgcaaaaagcctta 342
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71509831 aaacgaagaggtgatgccttaattgaaatggagtcagagcaggacgtgcaaaaagcctta 71509772

                                                        
Query: 343      gaaaaacaccgtatgtacatgggacagcggtatgtggaag 382
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 71509771 gaaaaacaccgtatgtacatgggacagcggtatgtggaag 71509732



 Score =  313 bits (158), Expect = 1e-82
 Identities = 158/158 (100%)
 Strand = Plus / Minus

                                                                            
Query: 69       ggagtccaaaactacctacctggaagacctgccacctctccctgagtatgaactgcctcc 128
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71512105 ggagtccaaaactacctacctggaagacctgccacctctccctgagtatgaactgcctcc 71512046

                                                                            
Query: 129      gtccaagttaggagaggaagtggatgatgtttatctcattcgagctcaaggattgccgtg 188
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71512045 gtccaagttaggagaggaagtggatgatgtttatctcattcgagctcaaggattgccgtg 71511986

                                                      
Query: 189      gtcgtgcacagtggaagatgtgcttagctttttctcag 226
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 71511985 gtcgtgcacagtggaagatgtgcttagctttttctcag 71511948



 Score =  291 bits (147), Expect = 4e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                            
Query: 381      agtatatgagataaataatgaagatgtggatgccttaatgaagaacctgcatgtcaaatc 440
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71509368 agtatatgagataaataatgaagatgtggatgccttaatgaagaacctgcatgtcaaatc 71509309

                                                                            
Query: 441      tacacctgtggtgaatgatggtgtggttcgtttgagaggacttccttatagttgcaatga 500
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71509308 tacacctgtggtgaatgatggtgtggttcgtttgagaggacttccttatagttgcaatga 71509249

                                           
Query: 501      aaaagatattgtagacttcttcgcagg 527
                |||||||||||||||||||||||||||
Sbjct: 71509248 aaaagatattgtagacttcttcgcagg 71509222



 Score =  266 bits (134), Expect = 2e-68
 Identities = 137/138 (99%)
 Strand = Plus / Minus

                                                                            
Query: 525      agggctgcatatagtagacattacgtttgtcatggattacagagggagaagaaaaacagg 584
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 71508585 agggctgcatatagtagacattacgtttgtaatggattacagagggagaagaaaaacagg 71508526

                                                                            
Query: 585      agaagcctacgtgcagtttgaagaaccagaaatggccaaccaagccctgttgaaacacag 644
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71508525 agaagcctacgtgcagtttgaagaaccagaaatggccaaccaagccctgttgaaacacag 71508466

                                  
Query: 645      ggaagaaattggtaaccg 662
                ||||||||||||||||||
Sbjct: 71508465 ggaagaaattggtaaccg 71508448



 Score =  244 bits (123), Expect = 8e-62
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                            
Query: 843      agaattgcctaaggagatgtcagaaaagcttccagaggctgttgattttggaactacatc 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71503742 agaattgcctaaggagatgtcagaaaagcttccagaggctgttgattttggaactacatc 71503683

                                                                            
Query: 903      ttcattacattttgtccacatgagaggattgcctttccaagccaatgcccaagacattat 962
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71503682 ttcattacattttgtccacatgagaggattgcctttccaagccaatgcccaagacattat 71503623

                   
Query: 963      aaa 965
                |||
Sbjct: 71503622 aaa 71503620



 Score =  198 bits (100), Expect = 4e-48
 Identities = 114/116 (98%), Gaps = 2/116 (1%)
 Strand = Plus / Minus

                                                                            
Query: 973      gctccactgaagcctgttagaatcaccatggaatatagctccagtgggaaggccactgga 1032
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71502120 gctccactgaagcctgttagaatcaccatggaatatagctccagtgggaaggccactgga 71502061

                                                                        
Query: 1033     gaagctgatgtgcacttcgagaccccatga-gatgctgtggcagctatgctcaagg 1087
                |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 71502060 gaagctgatgtgcacttcgaga-cccatgaggatgctgtggcagctatgctcaagg 71502006



 Score =  137 bits (69), Expect = 1e-29
 Identities = 69/69 (100%)
 Strand = Plus / Minus

                                                                            
Query: 2        ctggtcggttgggcagtgtaagtgtggctgggggtgaatgttgaggccttgtttcccgcc 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71514605 ctggtcggttgggcagtgtaagtgtggctgggggtgaatgttgaggccttgtttcccgcc 71514546

                         
Query: 62       ggcccatgg 70
                |||||||||
Sbjct: 71514545 ggcccatgg 71514537


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,205,441
Number of extensions: 237
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 8
Length of query: 1087
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1066
Effective length of database: 2,808,413,156
Effective search space: 2993768424296
Effective search space used: 2993768424296
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)