Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003654
(1926 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179227.1| poly [ADP-ribose] polymerase 8 [Bos taurus]. 834 0.0
Alignment gi|XP_002696386.1| PREDICTED: poly (ADP-ribose) polymerase fami... 834 0.0
Alignment gi|NP_001096711.1| poly (ADP-ribose) polymerase family, member ... 154 3e-37
>ref|NP_001179227.1| poly [ADP-ribose] polymerase 8 [Bos taurus].
Length = 854
Score = 834 bits (2155), Expect = 0.0
Identities = 418/476 (87%), Positives = 423/476 (88%)
Frame = +3
Query: 129 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY 308
MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGPKSVSYSVHVSEDY
Sbjct: 1 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPKSVSYSVHVSEDY 60
Query: 309 PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 488
PDNTYVSSSENDEDVLVTTEPIP+IFHR+ATELRKTNDINCCLSIKSKLQKENGEESRQN
Sbjct: 61 PDNTYVSSSENDEDVLVTTEPIPVIFHRLATELRKTNDINCCLSIKSKLQKENGEESRQN 120
Query: 489 STVXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXX 668
STV FYYGGQVNYDGELHKHPQLEADL AVREIYGPHAVSLREYGA
Sbjct: 121 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLLAVREIYGPHAVSLREYGAIDD 180
Query: 669 XXXXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 848
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
Sbjct: 181 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 240
Query: 849 GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 1028
GHQLKKIMQTFVTQQWKQSKEKS+CLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
Sbjct: 241 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 300
Query: 1029 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH 1208
KSKLKSEQDGISKTHKLLRRTCSSTVKT+DVCA K HRTFGRSLSSDPRAEQAVTTIKSH
Sbjct: 301 KSKLKSEQDGISKTHKLLRRTCSSTVKTEDVCAPKPHRTFGRSLSSDPRAEQAVTTIKSH 360
Query: 1209 KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 1388
KLLNRPC A VKQEDCL LKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL
Sbjct: 361 KLLNRPCSAAVKQEDCLALKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 420
Query: 1389 YGLKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTPXXXXXXQPA 1556
YGLKNH ELFKEPN EGRRLSLTSGLIGILTP QPA
Sbjct: 421 YGLKNHKLLSKSYSSAPKSSKTELFKEPNTEGRRLSLTSGLIGILTPSSSSSSQPA 476
>ref|XP_002696386.1| PREDICTED: poly (ADP-ribose) polymerase family, member 8 [Bos
taurus].
Length = 854
Score = 834 bits (2155), Expect = 0.0
Identities = 418/476 (87%), Positives = 423/476 (88%)
Frame = +3
Query: 129 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY 308
MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGPKSVSYSVHVSEDY
Sbjct: 1 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPKSVSYSVHVSEDY 60
Query: 309 PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 488
PDNTYVSSSENDEDVLVTTEPIP+IFHR+ATELRKTNDINCCLSIKSKLQKENGEESRQN
Sbjct: 61 PDNTYVSSSENDEDVLVTTEPIPVIFHRLATELRKTNDINCCLSIKSKLQKENGEESRQN 120
Query: 489 STVXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXX 668
STV FYYGGQVNYDGELHKHPQLEADL AVREIYGPHAVSLREYGA
Sbjct: 121 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLLAVREIYGPHAVSLREYGAIDD 180
Query: 669 XXXXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 848
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
Sbjct: 181 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 240
Query: 849 GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 1028
GHQLKKIMQTFVTQQWKQSKEKS+CLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
Sbjct: 241 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 300
Query: 1029 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH 1208
KSKLKSEQDGISKTHKLLRRTCSSTVKT+DVCA K HRTFGRSLSSDPRAEQAVTTIKSH
Sbjct: 301 KSKLKSEQDGISKTHKLLRRTCSSTVKTEDVCAPKPHRTFGRSLSSDPRAEQAVTTIKSH 360
Query: 1209 KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 1388
KLLNRPC A VKQEDCL LKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL
Sbjct: 361 KLLNRPCSAAVKQEDCLALKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 420
Query: 1389 YGLKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTPXXXXXXQPA 1556
YGLKNH ELFKEPN EGRRLSLTSGLIGILTP QPA
Sbjct: 421 YGLKNHKLLSKSYSSAPKSSKTELFKEPNTEGRRLSLTSGLIGILTPSSSSSSQPA 476
>ref|NP_001096711.1| poly (ADP-ribose) polymerase family, member 6 [Bos taurus].
Length = 384
Score = 154 bits (389), Expect = 3e-37
Identities = 86/204 (42%), Positives = 122/204 (59%), Gaps = 8/204 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDIDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKTSGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDV 1121
+ +L+ R+ S T+K V
Sbjct: 202 D---LRVGRLMNRSISCTMKNPKV 222
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,276,019
Number of extensions: 1677454
Number of successful extensions: 5699
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5665
Number of HSP's successfully gapped: 3
Length of query: 642
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 533
Effective length of database: 14,074,782
Effective search space: 7501858806
Effective search space used: 7501858806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003654
(1926 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867895.1| PREDICTED: similar to poly (ADP-ribose) polymer... 831 0.0
Alignment gi|XP_867888.1| PREDICTED: similar to poly (ADP-ribose) polymer... 831 0.0
Alignment gi|XP_853766.1| PREDICTED: similar to poly (ADP-ribose) polymer... 831 0.0
Alignment gi|XP_536478.2| PREDICTED: similar to poly (ADP-ribose) polymer... 320 3e-87
Alignment gi|XP_866818.1| PREDICTED: similar to poly (ADP-ribose) polymer... 158 2e-38
Alignment gi|XP_866914.1| PREDICTED: similar to poly (ADP-ribose) polymer... 155 2e-37
Alignment gi|XP_866903.1| PREDICTED: similar to poly (ADP-ribose) polymer... 155 2e-37
Alignment gi|XP_853096.1| PREDICTED: similar to poly (ADP-ribose) polymer... 155 2e-37
Alignment gi|XP_866863.1| PREDICTED: similar to poly (ADP-ribose) polymer... 155 2e-37
Alignment gi|XP_866807.1| PREDICTED: similar to poly (ADP-ribose) polymer... 155 2e-37
>ref|XP_867895.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 8
isoform 4 [Canis familiaris].
Length = 810
Score = 831 bits (2147), Expect = 0.0
Identities = 417/474 (87%), Positives = 424/474 (89%)
Frame = +3
Query: 135 MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDYPD 314
MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGPKSVSYSVHVSEDYPD
Sbjct: 1 MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPKSVSYSVHVSEDYPD 60
Query: 315 NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST 494
NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST
Sbjct: 61 NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST 120
Query: 495 VXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXX 674
V FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGA
Sbjct: 121 VEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDDVD 180
Query: 675 XXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGH 854
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGH
Sbjct: 181 IDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGH 240
Query: 855 QLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKS 1034
QLKKIMQTFVTQQWKQSKEKS+CLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKS
Sbjct: 241 QLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKS 300
Query: 1035 KLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSHKL 1214
KLKSEQDGISKTHKLLRRTCSSTVK DDVCA+KSHRTFGRSLSSDPRAEQAVT+IKSHKL
Sbjct: 301 KLKSEQDGISKTHKLLRRTCSSTVKADDVCATKSHRTFGRSLSSDPRAEQAVTSIKSHKL 360
Query: 1215 LNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEELYG 1394
L RPCPA VK EDCLTLKSHKLLTRSCSGDPRCEH++SLKPHKLLSRSYSSNLRMEELYG
Sbjct: 361 LTRPCPAAVKPEDCLTLKSHKLLTRSCSGDPRCEHSSSLKPHKLLSRSYSSNLRMEELYG 420
Query: 1395 LKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTPXXXXXXQPA 1556
LK+H ELFKEPNAEGRRLSLTSGLIGILTP QPA
Sbjct: 421 LKSHKLLSKSYCSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQPA 474
>ref|XP_867888.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 8
isoform 3 [Canis familiaris].
Length = 878
Score = 831 bits (2147), Expect = 0.0
Identities = 417/474 (87%), Positives = 424/474 (89%)
Frame = +3
Query: 135 MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDYPD 314
MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGPKSVSYSVHVSEDYPD
Sbjct: 1 MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPKSVSYSVHVSEDYPD 60
Query: 315 NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST 494
NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST
Sbjct: 61 NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST 120
Query: 495 VXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXX 674
V FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGA
Sbjct: 121 VEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDDVD 180
Query: 675 XXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGH 854
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGH
Sbjct: 181 IDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGH 240
Query: 855 QLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKS 1034
QLKKIMQTFVTQQWKQSKEKS+CLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKS
Sbjct: 241 QLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKS 300
Query: 1035 KLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSHKL 1214
KLKSEQDGISKTHKLLRRTCSSTVK DDVCA+KSHRTFGRSLSSDPRAEQAVT+IKSHKL
Sbjct: 301 KLKSEQDGISKTHKLLRRTCSSTVKADDVCATKSHRTFGRSLSSDPRAEQAVTSIKSHKL 360
Query: 1215 LNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEELYG 1394
L RPCPA VK EDCLTLKSHKLLTRSCSGDPRCEH++SLKPHKLLSRSYSSNLRMEELYG
Sbjct: 361 LTRPCPAAVKPEDCLTLKSHKLLTRSCSGDPRCEHSSSLKPHKLLSRSYSSNLRMEELYG 420
Query: 1395 LKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTPXXXXXXQPA 1556
LK+H ELFKEPNAEGRRLSLTSGLIGILTP QPA
Sbjct: 421 LKSHKLLSKSYCSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQPA 474
>ref|XP_853766.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 8
isoform 2 [Canis familiaris].
Length = 852
Score = 831 bits (2147), Expect = 0.0
Identities = 417/474 (87%), Positives = 424/474 (89%)
Frame = +3
Query: 135 MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDYPD 314
MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGPKSVSYSVHVSEDYPD
Sbjct: 1 MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPKSVSYSVHVSEDYPD 60
Query: 315 NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST 494
NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST
Sbjct: 61 NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST 120
Query: 495 VXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXX 674
V FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGA
Sbjct: 121 VEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDDVD 180
Query: 675 XXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGH 854
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGH
Sbjct: 181 IDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGH 240
Query: 855 QLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKS 1034
QLKKIMQTFVTQQWKQSKEKS+CLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKS
Sbjct: 241 QLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKS 300
Query: 1035 KLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSHKL 1214
KLKSEQDGISKTHKLLRRTCSSTVK DDVCA+KSHRTFGRSLSSDPRAEQAVT+IKSHKL
Sbjct: 301 KLKSEQDGISKTHKLLRRTCSSTVKADDVCATKSHRTFGRSLSSDPRAEQAVTSIKSHKL 360
Query: 1215 LNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEELYG 1394
L RPCPA VK EDCLTLKSHKLLTRSCSGDPRCEH++SLKPHKLLSRSYSSNLRMEELYG
Sbjct: 361 LTRPCPAAVKPEDCLTLKSHKLLTRSCSGDPRCEHSSSLKPHKLLSRSYSSNLRMEELYG 420
Query: 1395 LKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTPXXXXXXQPA 1556
LK+H ELFKEPNAEGRRLSLTSGLIGILTP QPA
Sbjct: 421 LKSHKLLSKSYCSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQPA 474
>ref|XP_536478.2| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 8
isoform 1 [Canis familiaris].
Length = 171
Score = 320 bits (820), Expect = 3e-87
Identities = 158/171 (92%), Positives = 159/171 (92%)
Frame = +3
Query: 135 MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDYPD 314
MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGPKSVSYSVHVSEDYPD
Sbjct: 1 MCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPKSVSYSVHVSEDYPD 60
Query: 315 NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST 494
NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST
Sbjct: 61 NTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNST 120
Query: 495 VXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLR 647
V FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLR
Sbjct: 121 VEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLR 171
>ref|XP_866818.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 6
isoform 2 isoform 5 [Canis familiaris].
Length = 251
Score = 158 bits (399), Expect = 2e-38
Identities = 95/237 (40%), Positives = 135/237 (56%), Gaps = 8/237 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDIDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKASGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSHKLLN 1220
+ + +L+ R+ S T+K V FG P + QAV T ++ L N
Sbjct: 202 E---LRVGRLMNRSISCTMKNPKV------EVFGY-----PPSPQAVVTARTSPLWN 244
>ref|XP_866914.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 6
isoform 2 isoform 13 [Canis familiaris].
Length = 611
Score = 155 bits (391), Expect = 2e-37
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDIDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKASGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDV 1121
+ + +L+ R+ S T+K V
Sbjct: 202 E---LRVGRLMNRSISCTMKNPKV 222
>ref|XP_866903.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 6
isoform 2 isoform 12 [Canis familiaris].
Length = 659
Score = 155 bits (391), Expect = 2e-37
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDIDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKASGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDV 1121
+ + +L+ R+ S T+K V
Sbjct: 202 E---LRVGRLMNRSISCTMKNPKV 222
>ref|XP_853096.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 6
isoform 2 isoform 2 [Canis familiaris].
Length = 631
Score = 155 bits (391), Expect = 2e-37
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDIDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKASGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDV 1121
+ + +L+ R+ S T+K V
Sbjct: 202 E---LRVGRLMNRSISCTMKNPKV 222
>ref|XP_866863.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 6
isoform 2 isoform 9 [Canis familiaris].
Length = 498
Score = 155 bits (391), Expect = 2e-37
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDIDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKASGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDV 1121
+ + +L+ R+ S T+K V
Sbjct: 202 E---LRVGRLMNRSISCTMKNPKV 222
>ref|XP_866807.1| PREDICTED: similar to poly (ADP-ribose) polymerase family, member 6
isoform 2 isoform 4 [Canis familiaris].
Length = 440
Score = 155 bits (391), Expect = 2e-37
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDIDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKASGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDV 1121
+ + +L+ R+ S T+K V
Sbjct: 202 E---LRVGRLMNRSISCTMKNPKV 222
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,078,361
Number of extensions: 1714392
Number of successful extensions: 6109
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6062
Number of HSP's successfully gapped: 11
Length of query: 642
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 533
Effective length of database: 15,240,880
Effective search space: 8123389040
Effective search space used: 8123389040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003654
(1926 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171527.1| poly [ADP-ribose] polymerase 8 isoform 2 [Ho... 831 0.0
Alignment gi|NP_078891.2| poly [ADP-ribose] polymerase 8 isoform 1 [Homo ... 831 0.0
Alignment gi|NP_001171526.1| poly [ADP-ribose] polymerase 8 isoform 1 [Ho... 831 0.0
Alignment gi|NP_064599.2| poly [ADP-ribose] polymerase 6 [Homo sapiens]. 155 2e-37
>ref|NP_001171527.1| poly [ADP-ribose] polymerase 8 isoform 2 [Homo sapiens].
Length = 812
Score = 831 bits (2147), Expect = 0.0
Identities = 413/467 (88%), Positives = 422/467 (90%)
Frame = +3
Query: 129 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY 308
MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGP+SVSYSVHVSEDY
Sbjct: 1 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPRSVSYSVHVSEDY 60
Query: 309 PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 488
PDNTYVSSSENDEDVLVTTEPIP+IFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
Sbjct: 61 PDNTYVSSSENDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 120
Query: 489 STVXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXX 668
STV FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGA
Sbjct: 121 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD 180
Query: 669 XXXXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 848
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
Sbjct: 181 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 240
Query: 849 GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 1028
GHQLKKIMQTFVTQQWKQSKEKS+CLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
Sbjct: 241 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 300
Query: 1029 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH 1208
KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVC +KSHRTFGRSLSSDPRAEQA+T IKSH
Sbjct: 301 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRAEQAMTAIKSH 360
Query: 1209 KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 1388
KLLNRPCPA VK E+CLTLKSH+LLTRSCSGDPRCEHN +LKPHKLLSRSYSSNLRMEEL
Sbjct: 361 KLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL 420
Query: 1389 YGLKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTP 1529
YGLKNH ELFKEPNAEGRRLSLTSGLIGILTP
Sbjct: 421 YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTP 467
>ref|NP_078891.2| poly [ADP-ribose] polymerase 8 isoform 1 [Homo sapiens].
Length = 854
Score = 831 bits (2147), Expect = 0.0
Identities = 413/467 (88%), Positives = 422/467 (90%)
Frame = +3
Query: 129 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY 308
MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGP+SVSYSVHVSEDY
Sbjct: 1 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPRSVSYSVHVSEDY 60
Query: 309 PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 488
PDNTYVSSSENDEDVLVTTEPIP+IFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
Sbjct: 61 PDNTYVSSSENDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 120
Query: 489 STVXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXX 668
STV FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGA
Sbjct: 121 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD 180
Query: 669 XXXXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 848
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
Sbjct: 181 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 240
Query: 849 GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 1028
GHQLKKIMQTFVTQQWKQSKEKS+CLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
Sbjct: 241 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 300
Query: 1029 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH 1208
KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVC +KSHRTFGRSLSSDPRAEQA+T IKSH
Sbjct: 301 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRAEQAMTAIKSH 360
Query: 1209 KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 1388
KLLNRPCPA VK E+CLTLKSH+LLTRSCSGDPRCEHN +LKPHKLLSRSYSSNLRMEEL
Sbjct: 361 KLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL 420
Query: 1389 YGLKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTP 1529
YGLKNH ELFKEPNAEGRRLSLTSGLIGILTP
Sbjct: 421 YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTP 467
>ref|NP_001171526.1| poly [ADP-ribose] polymerase 8 isoform 1 [Homo sapiens].
Length = 854
Score = 831 bits (2147), Expect = 0.0
Identities = 413/467 (88%), Positives = 422/467 (90%)
Frame = +3
Query: 129 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY 308
MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGP+SVSYSVHVSEDY
Sbjct: 1 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPRSVSYSVHVSEDY 60
Query: 309 PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 488
PDNTYVSSSENDEDVLVTTEPIP+IFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
Sbjct: 61 PDNTYVSSSENDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 120
Query: 489 STVXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXX 668
STV FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGA
Sbjct: 121 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD 180
Query: 669 XXXXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 848
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
Sbjct: 181 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 240
Query: 849 GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 1028
GHQLKKIMQTFVTQQWKQSKEKS+CLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
Sbjct: 241 GHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 300
Query: 1029 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH 1208
KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVC +KSHRTFGRSLSSDPRAEQA+T IKSH
Sbjct: 301 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRAEQAMTAIKSH 360
Query: 1209 KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 1388
KLLNRPCPA VK E+CLTLKSH+LLTRSCSGDPRCEHN +LKPHKLLSRSYSSNLRMEEL
Sbjct: 361 KLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL 420
Query: 1389 YGLKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTP 1529
YGLKNH ELFKEPNAEGRRLSLTSGLIGILTP
Sbjct: 421 YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTP 467
>ref|NP_064599.2| poly [ADP-ribose] polymerase 6 [Homo sapiens].
Length = 630
Score = 155 bits (391), Expect = 2e-37
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDIDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKASGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDV 1121
+ + +L+ R+ S T+K V
Sbjct: 202 E---LRVGRLMNRSISCTMKNPKV 222
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,912,998
Number of extensions: 1694894
Number of successful extensions: 5878
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5834
Number of HSP's successfully gapped: 4
Length of query: 642
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 533
Effective length of database: 14,704,088
Effective search space: 7837278904
Effective search space used: 7837278904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003654
(1926 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074478.1| poly [ADP-ribose] polymerase 8 [Mus musculus]. 820 0.0
Alignment gi|NP_084198.2| poly [ADP-ribose] polymerase 6 isoform 2 [Mus m... 154 2e-37
Alignment gi|NP_001192168.1| poly [ADP-ribose] polymerase 6 isoform 1 [Mu... 154 2e-37
>ref|NP_001074478.1| poly [ADP-ribose] polymerase 8 [Mus musculus].
Length = 891
Score = 820 bits (2118), Expect = 0.0
Identities = 411/477 (86%), Positives = 424/477 (88%)
Frame = +3
Query: 99 AAASFPGIYLMGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSV 278
A AS GIYLMGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTY+GGPKSV
Sbjct: 30 APASARGIYLMGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPKSV 89
Query: 279 SYSVHVSEDYPDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQ 458
SYSVHVSEDYPDNTYVSSSENDEDVLVTT+PIP+IFHRIATELRKTNDINCCLSI+SKLQ
Sbjct: 90 SYSVHVSEDYPDNTYVSSSENDEDVLVTTDPIPVIFHRIATELRKTNDINCCLSIRSKLQ 149
Query: 459 KENGEESRQNSTVXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAV 638
KENGEESRQNSTV FYYGGQVNYDGELHKHPQLEADLSAVRE+YGPHAV
Sbjct: 150 KENGEESRQNSTVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVRELYGPHAV 209
Query: 639 SLREYGAXXXXXXXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVF 818
SLREYGA SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVF
Sbjct: 210 SLREYGAIDDVDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVF 269
Query: 819 QISTKERFGLGHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSP 998
QISTKERFGLGHQLKKIMQTFV+QQWKQSK+KS+C H KKLSEKKVKSPLHLFSTLRRSP
Sbjct: 270 QISTKERFGLGHQLKKIMQTFVSQQWKQSKDKSNCPHGKKLSEKKVKSPLHLFSTLRRSP 329
Query: 999 SYPPPGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRA 1178
SYPPPGCGKSKSKLK EQDGISKTHKLLRRTCSSTVK DD+CA KSHRTFGRSLSSDPRA
Sbjct: 330 SYPPPGCGKSKSKLKPEQDGISKTHKLLRRTCSSTVKADDMCA-KSHRTFGRSLSSDPRA 388
Query: 1179 EQAVTTIKSHKLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRS 1358
EQA++TIKSHKLL RPCP+ KQEDCLTLKSHKLLTRSCSGDPRCEHN +LKPHKLLSRS
Sbjct: 389 EQAMSTIKSHKLLGRPCPSAGKQEDCLTLKSHKLLTRSCSGDPRCEHNTNLKPHKLLSRS 448
Query: 1359 YSSNLRMEELYGLKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTP 1529
YSSNLRMEELYGLKNH E FKEPNAEGRRLSLTSGLIGILTP
Sbjct: 449 YSSNLRMEELYGLKNHKLLSKSYSSAPKTSKMEHFKEPNAEGRRLSLTSGLIGILTP 505
>ref|NP_084198.2| poly [ADP-ribose] polymerase 6 isoform 2 [Mus musculus].
Length = 610
Score = 154 bits (390), Expect = 2e-37
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDLDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILCMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKASGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDV 1121
+ + +L+ R+ S T+K V
Sbjct: 202 E---LRVGRLMNRSISCTMKNPKV 222
>ref|NP_001192168.1| poly [ADP-ribose] polymerase 6 isoform 1 [Mus musculus].
Length = 630
Score = 154 bits (390), Expect = 2e-37
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Frame = +3
Query: 534 FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXXXXXXXXXXXSFLDEE 713
F YG Q + +L++HPQL+AD+ AV+EIY ++VS+REYG SFLDEE
Sbjct: 22 FLYGVQGSCAADLYRHPQLDADIEAVKEIYSENSVSIREYGTIDDVDLDLHINISFLDEE 81
Query: 714 IAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQ 893
++ AW+V+RTEPI++RL SL+QYL+GP P+++VFQ S KE FGLG QLKKI+ F +QQ
Sbjct: 82 VSTAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILCMFTSQQ 141
Query: 894 WKQ--------SKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSE 1049
WK +EK + KK ++ L +FS + +SPS+P K KL
Sbjct: 142 WKHLSNDFLKTQQEKRHSWFKASGTIKKFRAGLSIFSPIPKSPSFPIIQDSMLKGKLGVP 201
Query: 1050 QDGISKTHKLLRRTCSSTVKTDDV 1121
+ + +L+ R+ S T+K V
Sbjct: 202 E---LRVGRLMNRSISCTMKNPKV 222
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,800,155
Number of extensions: 1441210
Number of successful extensions: 4925
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4905
Number of HSP's successfully gapped: 3
Length of query: 642
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 534
Effective length of database: 12,373,671
Effective search space: 6607540314
Effective search space used: 6607540314
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003654
(1926 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133981.1| PREDICTED: poly [ADP-ribose] polymerase 8 is... 853 0.0
Alignment gi|XP_003133980.1| PREDICTED: poly [ADP-ribose] polymerase 8 is... 853 0.0
Alignment gi|XP_003359821.1| PREDICTED: poly [ADP-ribose] polymerase 8 [S... 623 e-178
>ref|XP_003133981.1| PREDICTED: poly [ADP-ribose] polymerase 8 isoform 2 [Sus scrofa].
Length = 812
Score = 853 bits (2204), Expect = 0.0
Identities = 430/476 (90%), Positives = 430/476 (90%)
Frame = +3
Query: 129 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY 308
MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY
Sbjct: 1 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY 60
Query: 309 PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 488
PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
Sbjct: 61 PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 120
Query: 489 STVXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXX 668
STV FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGA
Sbjct: 121 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD 180
Query: 669 XXXXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 848
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
Sbjct: 181 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 240
Query: 849 GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 1028
GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
Sbjct: 241 GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 300
Query: 1029 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH 1208
KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH
Sbjct: 301 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH 360
Query: 1209 KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 1388
KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL
Sbjct: 361 KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 420
Query: 1389 YGLKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTPXXXXXXQPA 1556
YGLKNH ELFKEPNAEGRRLSLTSGLIGILTP QPA
Sbjct: 421 YGLKNHKLLSKSYSSTPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQPA 476
>ref|XP_003133980.1| PREDICTED: poly [ADP-ribose] polymerase 8 isoform 1 [Sus scrofa].
Length = 854
Score = 853 bits (2204), Expect = 0.0
Identities = 430/476 (90%), Positives = 430/476 (90%)
Frame = +3
Query: 129 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY 308
MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY
Sbjct: 1 MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDY 60
Query: 309 PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 488
PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN
Sbjct: 61 PDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQN 120
Query: 489 STVXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAXXX 668
STV FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGA
Sbjct: 121 STVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDD 180
Query: 669 XXXXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 848
SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL
Sbjct: 181 VDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGL 240
Query: 849 GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 1028
GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS
Sbjct: 241 GHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKS 300
Query: 1029 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH 1208
KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH
Sbjct: 301 KSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSH 360
Query: 1209 KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 1388
KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL
Sbjct: 361 KLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEEL 420
Query: 1389 YGLKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTPXXXXXXQPA 1556
YGLKNH ELFKEPNAEGRRLSLTSGLIGILTP QPA
Sbjct: 421 YGLKNHKLLSKSYSSTPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQPA 476
>ref|XP_003359821.1| PREDICTED: poly [ADP-ribose] polymerase 8 [Sus scrofa].
Length = 746
Score = 623 bits (1606), Expect = e-178
Identities = 315/362 (87%), Positives = 316/362 (87%)
Frame = +3
Query: 471 EESRQNSTVXXXXXXXXXXXXFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLRE 650
+ESRQNSTV FYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLRE
Sbjct: 7 QESRQNSTVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLRE 66
Query: 651 YGAXXXXXXXXXXXXSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQIST 830
YGA SFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQIST
Sbjct: 67 YGAIDDVDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQIST 126
Query: 831 KERFGLGHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPP 1010
KERFGLGHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPP
Sbjct: 127 KERFGLGHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPP 186
Query: 1011 PGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAV 1190
PGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAV
Sbjct: 187 PGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAV 246
Query: 1191 TTIKSHKLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSN 1370
TTIKSHKLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSN
Sbjct: 247 TTIKSHKLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSN 306
Query: 1371 LRMEELYGLKNHXXXXXXXXXXXXXXXXELFKEPNAEGRRLSLTSGLIGILTPXXXXXXQ 1550
LRMEELYGLKNH ELFKEPNAEGRRLSLTSGLIGILTP Q
Sbjct: 307 LRMEELYGLKNHKLLSKSYSSTPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQ 366
Query: 1551 PA 1556
PA
Sbjct: 367 PA 368
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,404,661
Number of extensions: 1094275
Number of successful extensions: 3737
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3698
Number of HSP's successfully gapped: 3
Length of query: 642
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 537
Effective length of database: 8,729,747
Effective search space: 4687874139
Effective search space used: 4687874139
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003654
(1926 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 1308 0.0
Sscrofa_Chr02 355 6e-95
>Sscrofa_Chr16
|| Length = 86898991
Score = 1308 bits (660), Expect = 0.0
Identities = 660/660 (100%)
Strand = Plus / Plus
Query: 990 aggtcgcccagttatcctccccctggttgtggaaaaagcaaatccaagctgaaatctgag 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008234 aggtcgcccagttatcctccccctggttgtggaaaaagcaaatccaagctgaaatctgag 32008293
Query: 1050 caagacggaatctccaaaacgcacaagttgctgcggaggacttgttccagcaccgtcaag 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008294 caagacggaatctccaaaacgcacaagttgctgcggaggacttgttccagcaccgtcaag 32008353
Query: 1110 acggatgacgtgtgcgcctccaagtcacaccggaccttcgggcgctcgctgtccagcgac 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008354 acggatgacgtgtgcgcctccaagtcacaccggaccttcgggcgctcgctgtccagcgac 32008413
Query: 1170 cccagggctgagcaggcagtgacgaccattaagtcgcacaaactcttgaaccgtccctgc 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008414 cccagggctgagcaggcagtgacgaccattaagtcgcacaaactcttgaaccgtccctgc 32008473
Query: 1230 ccggccactgttaagcaggaggactgcctcacactcaagtcgcataaactcttgactcgc 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008474 ccggccactgttaagcaggaggactgcctcacactcaagtcgcataaactcttgactcgc 32008533
Query: 1290 tcttgctctggggacccgcgctgtgagcacaacgccagcctgaagccccacaaactctta 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008534 tcttgctctggggacccgcgctgtgagcacaacgccagcctgaagccccacaaactctta 32008593
Query: 1350 agcaggtcttattccagtaacctcagaatggaagaattatatggactcaagaaccacaag 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008594 agcaggtcttattccagtaacctcagaatggaagaattatatggactcaagaaccacaag 32008653
Query: 1410 ttactcagcaagtcttactccagcacccccaagtcatccaaaacggagctcttcaaggaa 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008654 ttactcagcaagtcttactccagcacccccaagtcatccaaaacggagctcttcaaggaa 32008713
Query: 1470 cctaatgcagagggcaggaggctctctcttacctcagggcttattggtatcttaacacca 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008714 cctaatgcagagggcaggaggctctctcttacctcagggcttattggtatcttaacacca 32008773
Query: 1530 tcgtcatcttcatcttcccagcctgccgtgcgtacaagttttcatcctgagttcttaact 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008774 tcgtcatcttcatcttcccagcctgccgtgcgtacaagttttcatcctgagttcttaact 32008833
Query: 1590 gttagctaaggggcaatagagatttctgttgtttggtttgttttgatctgatagagacat 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008834 gttagctaaggggcaatagagatttctgttgtttggtttgttttgatctgatagagacat 32008893
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Plus
Query: 1 cttcgccttcagcccctgcctcggccagaggtttcatttttaactgaatatttacgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31879574 cttcgccttcagcccctgcctcggccagaggtttcatttttaactgaatatttacgaaag 31879633
Query: 61 ctggaagcgtgcgaggggggtggagtggggtggaaatagcggctgcttcttttccaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31879634 ctggaagcgtgcgaggggggtggagtggggtggaaatagcggctgcttcttttccaggga 31879693
Query: 121 tttatttaatggggatgtgttcaaggcaagagcgaattcagaaggatatcgacgtcgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31879694 tttatttaatggggatgtgttcaaggcaagagcgaattcagaaggatatcgacgtcgtga 31879753
Query: 181 tccagaagtccagagccgagaaggactgtctgtttgcag 219
|||||||||||||||||||||||||||||||||||||||
Sbjct: 31879754 tccagaagtccagagccgagaaggactgtctgtttgcag 31879792
Score = 353 bits (178), Expect = 2e-94
Identities = 238/252 (94%), Gaps = 7/252 (2%)
Strand = Plus / Plus
Query: 1675 cctggggtttctccttttggatgttatcttgcataccaggcattcgcaactggtactgga 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008917 cctggggtttctccttttggatgttatcttgcataccaggcattcgcaactggtactgga 32008976
Query: 1735 atgctcgttttgattctgaaaaaggaaatgctgctgtagatttgaggtctagtccagatt 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32008977 atgctcgttttgattctgaaaaaggaaatgctgctgtagatttgaggtctagtccagatt 32009036
Query: 1795 cctgtcaggataattaatgctccctaaaaaatggaaggaagtcagttgggttcacaaaat 1854
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 32009037 cctgtcaggataattaatgctcc--taaaaatggaaggaagtcagttggattcac-aaag 32009093
Query: 1855 tctttcccttttaaggaaacatggcagttttcttgtttttatttagtaaggttttatctc 1914
||||| |||||||||||| ||||||||||||| || |||||||||||| | ||||||||
Sbjct: 32009094 tcttt-ccttttaaggaagcatggcagttttcatg-ttttatttagta--ggtttatctc 32009149
Query: 1915 ctctcccatttt 1926
|||||||||||
Sbjct: 32009150 atctcccatttt 32009161
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 868 tcatgcagacatttgttacacagcagtggaaacagagcaaagaaaaatccagttgcctgc 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32007581 tcatgcagacatttgttacacagcagtggaaacagagcaaagaaaaatccagttgcctgc 32007640
Query: 928 acaacaagaagctgtcagagaagaaagtgaagtctcccttgcatttattttctaccttgc 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32007641 acaacaagaagctgtcagagaagaaagtgaagtctcccttgcatttattttctaccttgc 32007700
Query: 988 gcaggt 993
||||||
Sbjct: 32007701 gcaggt 32007706
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 549 caggtgaactacgacggggagctgcacaaacaccctcagctcgaagctgatttgtcagca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31981610 caggtgaactacgacggggagctgcacaaacaccctcagctcgaagctgatttgtcagca 31981669
Query: 609 gtgagagagatatatggaccacatgcagtttctctcagg 647
|||||||||||||||||||||||||||||||||||||||
Sbjct: 31981670 gtgagagagatatatggaccacatgcagtttctctcagg 31981708
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 310 cagataatacgtatgtatcaagttcagaaaatgatgaagatgtattagttactacagagc 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31977935 cagataatacgtatgtatcaagttcagaaaatgatgaagatgtattagttactacagagc 31977994
Query: 370 caattccaataatttttcatcgaatagcaacag 402
|||||||||||||||||||||||||||||||||
Sbjct: 31977995 caattccaataatttttcatcgaatagcaacag 31978027
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 708 gaggagattgctgtggcatgggaagtgattcgaacagaacctataattgtccgactacac 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31992905 gaggagattgctgtggcatgggaagtgattcgaacagaacctataattgtccgactacac 31992964
Query: 768 tgttcacttacacagtatttaaatggcccag 798
|||||||||||||||||||||||||||||||
Sbjct: 31992965 tgttcacttacacagtatttaaatggcccag 31992995
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 472 aggagtccagacagaatagtacggtggaagaagattctgaaggagataatgattctgaag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31980306 aggagtccagacagaatagtacggtggaagaagattctgaaggagataatgattctgaag 31980365
Query: 532 aattttattatggaggacaggt 553
||||||||||||||||||||||
Sbjct: 31980366 aattttattatggaggacaggt 31980387
Score = 149 bits (75), Expect = 7e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 400 cagagttaagaaagacaaatgacattaactgttgcttatccataaaatccaaattacaga 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31978763 cagagttaagaaagacaaatgacattaactgttgcttatccataaaatccaaattacaga 31978822
Query: 460 aggaaaatggggagg 474
|||||||||||||||
Sbjct: 31978823 aggaaaatggggagg 31978837
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 643 tcagggaatatggagccattgatgatgtagatattgatctgcatattgatgttagctttc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31992058 tcagggaatatggagccattgatgatgtagatattgatctgcatattgatgttagctttc 31992117
Query: 703 ttgatg 708
||||||
Sbjct: 31992118 ttgatg 31992123
Score = 129 bits (65), Expect = 6e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 796 cagtgcccactgttgatgtctttcagatctccacaaaagagagatttggattaggacatc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32000607 cagtgcccactgttgatgtctttcagatctccacaaaagagagatttggattaggacatc 32000666
Query: 856 agctg 860
|||||
Sbjct: 32000667 agctg 32000671
Score = 115 bits (58), Expect = 9e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 217 cagatttcagatactcagactccacctttactttcacctacattggcggccccaaaag 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31880752 cagatttcagatactcagactccacctttactttcacctacattggcggccccaaaag 31880809
Score = 79.8 bits (40), Expect = 5e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 273 agtgtatcctattctgtacatgtgtctgaagattacccag 312
||||||||||||||||||||||||||||||||||||||||
Sbjct: 31971559 agtgtatcctattctgtacatgtgtctgaagattacccag 31971598
>Sscrofa_Chr02
|| Length = 162569375
Score = 355 bits (179), Expect = 6e-95
Identities = 240/259 (92%), Gaps = 1/259 (0%)
Strand = Plus / Minus
Query: 5 gccttcagcccctgcctcggccagaggtttcatttttaactgaatatttacgaaagctgg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |
Sbjct: 55903214 gccttcagcccctgcctcagccagaggtttcatttttaactgaatatttac-aaatctag 55903156
Query: 65 aagcgtgcgaggggggtggagtggggtggaaatagcggctgcttcttttccagggattta 124
|||| || || ||| |||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct: 55903155 aagcttgtgaagggagtggggtggggtggaaatagtggcttcttcttttccagggattta 55903096
Query: 125 tttaatggggatgtgttcaaggcaagagcgaattcagaaggatatcgacgtcgtgatcca 184
||||||||| ||||||||||||||||||| ||||||||||||||| | | ||||||||||
Sbjct: 55903095 tttaatgggaatgtgttcaaggcaagagcaaattcagaaggatattggcatcgtgatcca 55903036
Query: 185 gaagtccagagccgagaaggactgtctgtttgcagatttcagatactcagactccacctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 55903035 gaagtccagagccgagaaggactgtctgtttgcagatttcagatactcagactccacttt 55902976
Query: 245 tactttcacctacattggc 263
||||||||| || ||||||
Sbjct: 55902975 tactttcacttatattggc 55902957
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,548,398
Number of extensions: 549
Number of successful extensions: 549
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 14
Length of query: 1926
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1904
Effective length of database: 2,808,408,574
Effective search space: 5347209924896
Effective search space used: 5347209924896
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)