Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003655
(1122 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069976.1| ubiquinol-cytochrome c reductase complex cha... 526 e-156
>ref|NP_001069976.1| ubiquinol-cytochrome c reductase complex chaperone [Bos taurus].
Length = 296
Score = 526 bits (1356), Expect(2) = e-156
Identities = 261/281 (92%), Positives = 268/281 (95%)
Frame = +1
Query: 118 MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQWPQMSQALACGGSEQIP 297
MALLVRVLRN+ISISQWVP CSRL+L S TQGQ R+LSGT Q MSQALACGGS QIP
Sbjct: 1 MALLVRVLRNQISISQWVPGCSRLLLASRTQGQQGRTLSGTFQ---MSQALACGGSVQIP 57
Query: 298 GVDVQLSRKYHTTNKLSTTKDSSQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 477
GVD++L RKYHTT+KLS+TKDS QPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
Sbjct: 58 GVDIELRRKYHTTSKLSSTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 117
Query: 478 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 657
YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
Sbjct: 118 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 177
Query: 658 EDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE 837
EDVEQRGRIMGVN YILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE
Sbjct: 178 EDVEQRGRIMGVNPYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE 237
Query: 838 DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 960
DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK
Sbjct: 238 DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 278
Score = 43.5 bits (101), Expect(2) = e-156
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 945 PSSGENPQSVLKPHSPTYNDEGL 1013
P +NPQS+LKPHSPTYNDEGL
Sbjct: 274 PLVEKNPQSILKPHSPTYNDEGL 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,675,818
Number of extensions: 1341692
Number of successful extensions: 4029
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4025
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,240,222
Effective search space: 3844859940
Effective search space used: 3844859940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003655
(1122 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851851.1| PREDICTED: similar to basic FGF-repressed Zic b... 535 e-158
Alignment gi|XP_864551.1| PREDICTED: similar to basic FGF-repressed Zic b... 471 e-139
>ref|XP_851851.1| PREDICTED: similar to basic FGF-repressed Zic binding protein
isoform a isoform 2 [Canis familiaris].
Length = 299
Score = 535 bits (1378), Expect(2) = e-158
Identities = 261/281 (92%), Positives = 267/281 (95%)
Frame = +1
Query: 118 MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQWPQMSQALACGGSEQIP 297
MALLVRVLRNRI+ISQW PVCSRLV VS TQG+W R+LSGT QW MSQ L CG SEQIP
Sbjct: 1 MALLVRVLRNRINISQWFPVCSRLVPVSSTQGKWGRALSGTFQWSPMSQFLGCGRSEQIP 60
Query: 298 GVDVQLSRKYHTTNKLSTTKDSSQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 477
GV VQ SRKYHTTNKLSTTKDS QPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
Sbjct: 61 GVGVQWSRKYHTTNKLSTTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 120
Query: 478 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 657
YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
Sbjct: 121 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 180
Query: 658 EDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE 837
EDVEQRGR+MGVNSYILKKNM+LMTNNFYAAILGYDEGILSDD GLAAALWRTFFNQKCE
Sbjct: 181 EDVEQRGRVMGVNSYILKKNMILMTNNFYAAILGYDEGILSDDHGLAAALWRTFFNQKCE 240
Query: 838 DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 960
DPRQLELLVEYVRKQ+QYLDSMNGEDLLLTGEVSWRPLVEK
Sbjct: 241 DPRQLELLVEYVRKQMQYLDSMNGEDLLLTGEVSWRPLVEK 281
Score = 43.5 bits (101), Expect(2) = e-158
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 945 PSSGENPQSVLKPHSPTYNDEGL 1013
P +NPQS+LKPHSPTYNDEGL
Sbjct: 277 PLVEKNPQSILKPHSPTYNDEGL 299
>ref|XP_864551.1| PREDICTED: similar to basic FGF-repressed Zic binding protein
isoform a isoform 3 [Canis familiaris].
Length = 273
Score = 471 bits (1211), Expect(2) = e-139
Identities = 236/281 (83%), Positives = 241/281 (85%)
Frame = +1
Query: 118 MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQWPQMSQALACGGSEQIP 297
MALLVRVLRNRI+ISQW PVCSRLV VS TQG+W R+LSGT QW MSQ L CG SEQIP
Sbjct: 1 MALLVRVLRNRINISQWFPVCSRLVPVSSTQGKWGRALSGTFQWSPMSQFLGCGRSEQIP 60
Query: 298 GVDVQLSRKYHTTNKLSTTKDSSQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 477
GV VQ SRKYHTTNKLSTTKDS QPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
Sbjct: 61 GVGVQWSRKYHTTNKLSTTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 120
Query: 478 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 657
YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
Sbjct: 121 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 180
Query: 658 EDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE 837
EDVEQRGR+MG GILSDD GLAAALWRTFFNQKCE
Sbjct: 181 EDVEQRGRVMG--------------------------GILSDDHGLAAALWRTFFNQKCE 214
Query: 838 DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 960
DPRQLELLVEYVRKQ+QYLDSMNGEDLLLTGEVSWRPLVEK
Sbjct: 215 DPRQLELLVEYVRKQMQYLDSMNGEDLLLTGEVSWRPLVEK 255
Score = 43.5 bits (101), Expect(2) = e-139
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 945 PSSGENPQSVLKPHSPTYNDEGL 1013
P +NPQS+LKPHSPTYNDEGL
Sbjct: 251 PLVEKNPQSILKPHSPTYNDEGL 273
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,608,266
Number of extensions: 1381111
Number of successful extensions: 4184
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4178
Number of HSP's successfully gapped: 4
Length of query: 374
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 270
Effective length of database: 15,407,560
Effective search space: 4160041200
Effective search space used: 4160041200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003655
(1122 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060714.3| ubiquinol-cytochrome c reductase complex chaper... 535 e-158
Alignment gi|NP_955781.2| ubiquinol-cytochrome c reductase complex chaper... 475 e-140
Alignment gi|NP_001171906.1| ubiquinol-cytochrome c reductase complex cha... 341 e-100
>ref|NP_060714.3| ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
isoform a [Homo sapiens].
Length = 299
Score = 535 bits (1379), Expect(2) = e-158
Identities = 258/281 (91%), Positives = 270/281 (96%)
Frame = +1
Query: 118 MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQWPQMSQALACGGSEQIP 297
MALLVRVLRN+ SISQWVPVCSRL+ VSPTQGQ R+LS TSQWPQMSQ+ ACGGSEQIP
Sbjct: 1 MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQWPQMSQSRACGGSEQIP 60
Query: 298 GVDVQLSRKYHTTNKLSTTKDSSQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 477
G+D+QL+RKYHTT KLSTTKDS QPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
Sbjct: 61 GIDIQLNRKYHTTRKLSTTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 120
Query: 478 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 657
YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
Sbjct: 121 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 180
Query: 658 EDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE 837
EDV+QRGR+MGVN YILKKNM+LMTN+FYAAILGYDEGILSDD GLAAALWRTFFN+KCE
Sbjct: 181 EDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSDDHGLAAALWRTFFNRKCE 240
Query: 838 DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 960
DPR LELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK
Sbjct: 241 DPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 281
Score = 43.5 bits (101), Expect(2) = e-158
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 945 PSSGENPQSVLKPHSPTYNDEGL 1013
P +NPQS+LKPHSPTYNDEGL
Sbjct: 277 PLVEKNPQSILKPHSPTYNDEGL 299
>ref|NP_955781.2| ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
isoform b [Homo sapiens].
Length = 273
Score = 475 bits (1222), Expect(2) = e-140
Identities = 235/281 (83%), Positives = 245/281 (87%)
Frame = +1
Query: 118 MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQWPQMSQALACGGSEQIP 297
MALLVRVLRN+ SISQWVPVCSRL+ VSPTQGQ R+LS TSQWPQMSQ+ ACGGSEQIP
Sbjct: 1 MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQWPQMSQSRACGGSEQIP 60
Query: 298 GVDVQLSRKYHTTNKLSTTKDSSQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 477
G+D+QL+RKYHTT KLSTTKDS QPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
Sbjct: 61 GIDIQLNRKYHTTRKLSTTKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 120
Query: 478 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 657
YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
Sbjct: 121 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 180
Query: 658 EDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE 837
EDV+QRGR+MG GILSDD GLAAALWRTFFN+KCE
Sbjct: 181 EDVQQRGRVMG--------------------------GILSDDHGLAAALWRTFFNRKCE 214
Query: 838 DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 960
DPR LELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK
Sbjct: 215 DPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 255
Score = 43.5 bits (101), Expect(2) = e-140
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 945 PSSGENPQSVLKPHSPTYNDEGL 1013
P +NPQS+LKPHSPTYNDEGL
Sbjct: 251 PLVEKNPQSILKPHSPTYNDEGL 273
>ref|NP_001171906.1| ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
isoform c [Homo sapiens].
Length = 231
Score = 341 bits (875), Expect(2) = e-100
Identities = 163/176 (92%), Positives = 169/176 (96%)
Frame = +1
Query: 433 LKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEG 612
L + KIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEG
Sbjct: 38 LSRTSQKIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEG 97
Query: 613 RSGKYMCRIIVHFMWEDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRG 792
RSGKYMCRIIVHFMWEDV+QRGR+MGVN YILKKNM+LMTN+FYAAILGYDEGILSDD G
Sbjct: 98 RSGKYMCRIIVHFMWEDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSDDHG 157
Query: 793 LAAALWRTFFNQKCEDPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 960
LAAALWRTFFN+KCEDPR LELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK
Sbjct: 158 LAAALWRTFFNRKCEDPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 213
Score = 43.5 bits (101), Expect(2) = e-100
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +3
Query: 945 PSSGENPQSVLKPHSPTYNDEGL 1013
P +NPQS+LKPHSPTYNDEGL
Sbjct: 209 PLVEKNPQSILKPHSPTYNDEGL 231
Score = 70.1 bits (170), Expect = 4e-12
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = +1
Query: 118 MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQ 246
MALLVRVLRN+ SISQWVPVCSRL+ VSPTQGQ R+LS TSQ
Sbjct: 1 MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQ 43
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,822,923
Number of extensions: 1365728
Number of successful extensions: 4021
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4017
Number of HSP's successfully gapped: 7
Length of query: 374
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,868,908
Effective search space: 4014605160
Effective search space used: 4014605160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003655
(1122 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061376.2| ubiquinol-cytochrome c reductase complex chaper... 496 e-146
>ref|NP_061376.2| ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
[Mus musculus].
Length = 295
Score = 496 bits (1278), Expect(2) = e-146
Identities = 244/281 (86%), Positives = 254/281 (90%)
Frame = +1
Query: 118 MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQWPQMSQALACGGSEQIP 297
MALLVRVLRN+ SISQWVPVCS+LV VSPTQ QWS TSQW Q +Q+ C GSEQ
Sbjct: 1 MALLVRVLRNQTSISQWVPVCSQLVSVSPTQRQWS----STSQWLQKNQSRVCLGSEQTV 56
Query: 298 GVDVQLSRKYHTTNKLSTTKDSSQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 477
G D +RKYH T+KL TT+D QPVEEKVG FTKIIEAMGFTGPLKYSKWKIKIAALRM
Sbjct: 57 GADTAQNRKYHNTSKLLTTQDFPQPVEEKVGPFTKIIEAMGFTGPLKYSKWKIKIAALRM 116
Query: 478 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 657
YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGR+GKYMCRIIVHFMW
Sbjct: 117 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRTGKYMCRIIVHFMW 176
Query: 658 EDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE 837
EDVEQRGR+MGVNSYILKKNM LMTNNFYAAILGYDEGILSDD GLAAALWRTFFNQKCE
Sbjct: 177 EDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGILSDDHGLAAALWRTFFNQKCE 236
Query: 838 DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 960
DPRQLELLVEYVRKQ+QYLDSMNGEDLLLTGEV WRPLVEK
Sbjct: 237 DPRQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWRPLVEK 277
Score = 42.4 bits (98), Expect(2) = e-146
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +3
Query: 945 PSSGENPQSVLKPHSPTYNDEGL 1013
P +NPQS+LKPH+PTYNDEGL
Sbjct: 273 PLVEKNPQSILKPHAPTYNDEGL 295
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,579,102
Number of extensions: 1146257
Number of successful extensions: 3509
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3507
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 271
Effective length of database: 12,523,851
Effective search space: 3393963621
Effective search space used: 3393963621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003655
(1122 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001165835.1| ubiquinol-cytochrome c reductase complex cha... 575 e-170
Alignment gi|XP_003361321.1| PREDICTED: ubiquinol-cytochrome c reductase ... 173 2e-43
>ref|NP_001165835.1| ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
[Sus scrofa].
Length = 299
Score = 575 bits (1481), Expect(2) = e-170
Identities = 281/281 (100%), Positives = 281/281 (100%)
Frame = +1
Query: 118 MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQWPQMSQALACGGSEQIP 297
MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQWPQMSQALACGGSEQIP
Sbjct: 1 MALLVRVLRNRISISQWVPVCSRLVLVSPTQGQWSRSLSGTSQWPQMSQALACGGSEQIP 60
Query: 298 GVDVQLSRKYHTTNKLSTTKDSSQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 477
GVDVQLSRKYHTTNKLSTTKDSSQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM
Sbjct: 61 GVDVQLSRKYHTTNKLSTTKDSSQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRM 120
Query: 478 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 657
YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW
Sbjct: 121 YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMW 180
Query: 658 EDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE 837
EDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE
Sbjct: 181 EDVEQRGRIMGVNSYILKKNMMLMTNNFYAAILGYDEGILSDDRGLAAALWRTFFNQKCE 240
Query: 838 DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 960
DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK
Sbjct: 241 DPRQLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEK 281
Score = 43.9 bits (102), Expect(2) = e-170
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +3
Query: 945 PSSGENPQSVLKPHSPTYNDEGL 1013
P +NPQSVLKPHSPTYNDEGL
Sbjct: 277 PLVEKNPQSVLKPHSPTYNDEGL 299
>ref|XP_003361321.1| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3
homolog, partial [Sus scrofa].
Length = 80
Score = 173 bits (438), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +1
Query: 451 KIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYM 630
KIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYM
Sbjct: 1 KIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYM 60
Query: 631 CRIIVHFMWEDVEQRGRIMG 690
CRIIVHFMWEDVEQRGRIMG
Sbjct: 61 CRIIVHFMWEDVEQRGRIMG 80
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,040,222
Number of extensions: 860975
Number of successful extensions: 2518
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2517
Number of HSP's successfully gapped: 3
Length of query: 374
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,854,232
Effective search space: 2426059568
Effective search space used: 2426059568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003655
(1122 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892260.2| Sus scrofa unplaced genomic scaffold ChrUScaf147 430 e-118
gb|GL894022.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 222 3e-55
Sscrofa_Chr17 220 1e-54
>gb|GL892260.2| Sus scrofa unplaced genomic scaffold ChrUScaf147
Length = 69185
Score = 430 bits (217), Expect = e-118
Identities = 238/241 (98%), Gaps = 3/241 (1%)
Strand = Plus / Minus
Query: 879 gcagatacagtacctggactctatgaatggtgaggatctgcttctgacaggggaggtgag 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36880 gcagatacagtacctggactctatgaatggtgaggatctgcttctgacaggggaggtgag 36821
Query: 939 ctggcgccctctagtggagaaaa-tcctcagagcgtcctgaagccccattccccaactta 997
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 36820 ctggcgccctctagtggagaaaaatcctcagagcgtcctgaagccccattccccaactta 36761
Query: 998 taacgacgagggtctttgatgcggggtcctgctgaaaagctggccagctagctttgagga 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36760 taacgacgagggtctttgatgcggggtcctgctgaaaagctggccagctagctttgagga 36701
Query: 1058 actgccagaagagaggtgcctggtttggcgcaggatcctgcagaaa-tggcctgaactga 1116
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 36700 actgccagaagagaggtgcct-gtttggcgcaggatcctgcagaaagtggcctgaactga 36642
Query: 1117 c 1117
|
Sbjct: 36641 c 36641
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 767 aggggatcctttcagatgatcgtgggctggctgctgccctctggagaaccttcttcaacc 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39820 aggggatcctttcagatgatcgtgggctggctgctgccctctggagaaccttcttcaacc 39761
Query: 827 agaaatgtgaagaccctcgacagcttgaattgttggtggagtatgtgaggaagcag 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39760 agaaatgtgaagaccctcgacagcttgaattgttggtggagtatgtgaggaagcag 39705
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 690 ggttaattcctatatcctgaagaagaacatgatgcttatgacaaataatttctatgcagc 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46786 ggttaattcctatatcctgaagaagaacatgatgcttatgacaaataatttctatgcagc 46727
Query: 750 aatcttgggctatgatgagg 769
||||||||||||||||||||
Sbjct: 46726 aatcttgggctatgatgagg 46707
>gb|GL894022.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2729
Length = 32785
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 581 ggatgtgtctagtccgaatgaagcaagaaggccggagtgggaaatacatgtgtcgtatca 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9152 ggatgtgtctagtccgaatgaagcaagaaggccggagtgggaaatacatgtgtcgtatca 9093
Query: 641 tagttcattttatgtgggaggatgttgaacagcgtggcagaatcatgggggt 692
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9092 tagttcattttatgtgggaggatgttgaacagcgtggcagaatcatgggggt 9041
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 450 gaagattaagattgcggccctgcgcatgtacactagctgtgtggagaaaactgactttga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30827 gaagattaagattgcggccctgcgcatgtacactagctgtgtggagaaaactgactttga 30768
Query: 510 ggaattctttctaag 524
|||||||||||||||
Sbjct: 30767 ggaattctttctaag 30753
Score = 123 bits (62), Expect = 2e-25
Identities = 65/66 (98%)
Strand = Plus / Minus
Query: 517 tttctaaggtgtcagatgcctgatacattcaattcatggtttcttataactctgcttcac 576
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23916 tttctagggtgtcagatgcctgatacattcaattcatggtttcttataactctgcttcac 23857
Query: 577 gtctgg 582
||||||
Sbjct: 23856 gtctgg 23851
>Sscrofa_Chr17
|| Length = 69701581
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 340 aagctttctactaccaaggactcctcacagcctgttgaggagaaagttggtgcctttaca 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44072484 aagctttctactaccaaggactcctcacagcctgttgaggagaaagttggtgcctttaca 44072543
Query: 400 aagataatagaagccatgggattcactggacctttgaaatacagtaaatgg 450
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44072544 aagataatagaagccatgggattcactggacctttgaaatacagtaaatgg 44072594
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 142 aggaaccggattagcatctcccagtgggttccagtatgcagccgattggtacttgtgtct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43881272 aggaaccggattagcatctcccagtgggttccagtatgcagccgattggtacttgtgtct 43881213
Query: 202 cctacacagggacagtggagcaggtctctgtctggtacttcccag 246
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43881212 cctacacagggacagtggagcaggtctctgtctggtacttcccag 43881168
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 142 aggaaccggattagcatctcccagtgggttccagtatgcagccgattggtacttgtgtct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44055387 aggaaccggattagcatctcccagtgggttccagtatgcagccgattggtacttgtgtct 44055446
Query: 202 cctacacagggacagtggagcaggtctctgtctggtacttcccag 246
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44055447 cctacacagggacagtggagcaggtctctgtctggtacttcccag 44055491
Score = 206 bits (104), Expect = 2e-50
Identities = 123/128 (96%), Gaps = 1/128 (0%)
Strand = Plus / Minus
Query: 15 gcccttgtcctgcacgcgccggcgaaa-ggcaaactagccgtggggtggcggcagctggg 73
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 43896199 gcccttgtcctgcacgcgccggcgaaaaggcaaactagtgaaggggtggcggcagctggg 43896140
Query: 74 actccggaagcccacccttcacccggaaatggttgtcgagaaacatggcgttgctggtgc 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43896139 actccggaagcccacccttcacccggaaatggttgtcgagaaacatggcgttgctggtgc 43896080
Query: 134 gagtcctt 141
||||||||
Sbjct: 43896079 gagtcctt 43896072
Score = 206 bits (104), Expect = 2e-50
Identities = 123/128 (96%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 15 gcccttgtcctgcacgcgccggcgaaa-ggcaaactagccgtggggtggcggcagctggg 73
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 44042219 gcccttgtcctgcacgcgccggcgaaaaggcaaactagtgaaggggtggcggcagctggg 44042278
Query: 74 actccggaagcccacccttcacccggaaatggttgtcgagaaacatggcgttgctggtgc 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44042279 actccggaagcccacccttcacccggaaatggttgtcgagaaacatggcgttgctggtgc 44042338
Query: 134 gagtcctt 141
||||||||
Sbjct: 44042339 gagtcctt 44042346
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 245 agtggccccagatgagccaggccctagcatgtggtggatcagaacagattcctggagtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44069314 agtggccccagatgagccaggccctagcatgtggtggatcagaacagattcctggagtag 44069373
Query: 305 atgttcagctgagtaggaagtatcacaccacaaataag 342
||||||||||||||||||||||||||||||||||||||
Sbjct: 44069374 atgttcagctgagtaggaagtatcacaccacaaataag 44069411
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,723,046
Number of extensions: 193
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 12
Length of query: 1122
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1101
Effective length of database: 2,808,413,156
Effective search space: 3092062884756
Effective search space used: 3092062884756
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)