Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003657
(1035 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073055.1| zinc finger FYVE domain-containing protein 2... 410 e-115
Alignment gi|NP_001193129.1| zinc finger FYVE domain-containing protein 1... 77 3e-14
Alignment gi|XP_002689414.1| PREDICTED: zinc finger, FYVE domain containi... 77 3e-14
Alignment gi|XP_002688484.1| PREDICTED: zinc finger, FYVE domain containi... 76 6e-14
Alignment gi|XP_600859.3| PREDICTED: zinc finger, FYVE domain containing ... 76 6e-14
Alignment gi|NP_001192396.1| 1-phosphatidylinositol-3-phosphate 5-kinase ... 74 3e-13
Alignment gi|XP_002685591.1| PREDICTED: fab1-like [Bos taurus]. 74 3e-13
Alignment gi|XP_002686450.1| PREDICTED: zinc finger, FYVE domain containi... 72 8e-13
Alignment gi|XP_869045.2| PREDICTED: zinc finger, FYVE domain containing ... 72 8e-13
Alignment gi|XP_002687251.1| PREDICTED: FYVE, RhoGEF and PH domain contai... 64 2e-10
>ref|NP_001073055.1| zinc finger FYVE domain-containing protein 21 [Bos taurus].
Length = 254
Score = 410 bits (1055), Expect = e-115
Identities = 203/254 (79%), Positives = 217/254 (85%), Gaps = 20/254 (7%)
Frame = +3
Query: 60 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCGAKFDFL 239
MSSEVAARRDAKKLVRSPSGLRMVPEHRA+GSPFGLEEP WVPDKECPRCMQC KFDFL
Sbjct: 1 MSSEVAARRDAKKLVRSPSGLRMVPEHRAYGSPFGLEEPPWVPDKECPRCMQCDTKFDFL 60
Query: 240 TRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECALVSHREAEFFDKQLKVLLSG 419
TRKHHCRRCGKCFCDKCC QKVALRRMCFVDPVRQCA CA VS REA+F+D+QLK+LLSG
Sbjct: 61 TRKHHCRRCGKCFCDKCCGQKVALRRMCFVDPVRQCAGCAPVSRREADFYDRQLKLLLSG 120
Query: 420 ATFLVTFGHSEKPETMVCRLSNNQRFLLL----DGSSRHEVEIARISAVQMLSEGFPPG- 584
ATFLVTF +SEKP+TMVCRLS+NQRFLLL DG EVE+ARI+AVQML+EG PPG
Sbjct: 121 ATFLVTFENSEKPDTMVCRLSSNQRFLLLDGDGDGDGHREVEVARIAAVQMLTEGLPPGD 180
Query: 585 ---------------GGNARATGMSLQYPAPGAEGVTQLKLTAGEDANGSRRQATAWLAA 719
GGNARA GM+LQY PGAEG+TQL LTAGEDA+GSRRQATAWLAA
Sbjct: 181 TLSHTSLPASRPAAEGGNARAIGMTLQYTTPGAEGLTQLTLTAGEDADGSRRQATAWLAA 240
Query: 720 MHKAAKLLYESRDQ 761
MHKAAKLLYESRDQ
Sbjct: 241 MHKAAKLLYESRDQ 254
>ref|NP_001193129.1| zinc finger FYVE domain-containing protein 16 [Bos taurus].
Length = 1546
Score = 76.6 bits (187), Expect = 3e-14
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = +3
Query: 150 GSPFGLEEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFV 329
G G ++P WVPD E P CM C KF F R+HHCR CGK FC CC++K L+ +
Sbjct: 741 GLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL--E 798
Query: 330 DPVRQCAEC 356
R C C
Sbjct: 799 KEARVCVVC 807
>ref|XP_002689414.1| PREDICTED: zinc finger, FYVE domain containing 9-like [Bos taurus].
Length = 1546
Score = 76.6 bits (187), Expect = 3e-14
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = +3
Query: 150 GSPFGLEEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFV 329
G G ++P WVPD E P CM C KF F R+HHCR CGK FC CC++K L+ +
Sbjct: 741 GLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL--E 798
Query: 330 DPVRQCAEC 356
R C C
Sbjct: 799 KEARVCVVC 807
>ref|XP_002688484.1| PREDICTED: zinc finger, FYVE domain containing 28 [Bos taurus].
Length = 873
Score = 75.9 bits (185), Expect = 6e-14
Identities = 31/63 (49%), Positives = 36/63 (57%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
+ P+WVPD+ C C C A F + RKHHCR CGK FC +C S L R V PVR C
Sbjct: 796 DPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVC 855
Query: 348 AEC 356
C
Sbjct: 856 THC 858
>ref|XP_600859.3| PREDICTED: zinc finger, FYVE domain containing 28 [Bos taurus].
Length = 856
Score = 75.9 bits (185), Expect = 6e-14
Identities = 31/63 (49%), Positives = 36/63 (57%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
+ P+WVPD+ C C C A F + RKHHCR CGK FC +C S L R V PVR C
Sbjct: 779 DPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVC 838
Query: 348 AEC 356
C
Sbjct: 839 THC 841
>ref|NP_001192396.1| 1-phosphatidylinositol-3-phosphate 5-kinase [Bos taurus].
Length = 2098
Score = 73.6 bits (179), Expect = 3e-13
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECA 359
W+PD +C C C KF R+HHCR CG+ FC +CC+Q++ + M + +R C C
Sbjct: 155 WMPDSQCKECYDCNEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGYTGDLRACTYCR 214
Query: 360 LVSHREAEFFD-----KQLKVLLSGATFLVTFGHSEKPETMVCRLSNNQRFL-------- 500
++ A D + L L A+ + +E + R ++ FL
Sbjct: 215 KIALSYAHSTDSNSIGEDLNALSDSASSVSVLDPNEPRTPVGSRKASRNIFLEDDFAWQS 274
Query: 501 LLDGSSRHEVEIARISAVQMLSEGFPPGGGNARATGMSLQYPA 629
L+ S + R+ +VQ + P +A T +SL A
Sbjct: 275 LIHPDSSNTALSTRLVSVQEDAGKSPARNRSASITNLSLDRSA 317
>ref|XP_002685591.1| PREDICTED: fab1-like [Bos taurus].
Length = 2098
Score = 73.6 bits (179), Expect = 3e-13
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECA 359
W+PD +C C C KF R+HHCR CG+ FC +CC+Q++ + M + +R C C
Sbjct: 155 WMPDSQCKECYDCNEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGYTGDLRACTYCR 214
Query: 360 LVSHREAEFFD-----KQLKVLLSGATFLVTFGHSEKPETMVCRLSNNQRFL-------- 500
++ A D + L L A+ + +E + R ++ FL
Sbjct: 215 KIALSYAHSTDSNSIGEDLNALSDSASSVSVLDPNEPRTPVGSRKASRNIFLEDDFAWQS 274
Query: 501 LLDGSSRHEVEIARISAVQMLSEGFPPGGGNARATGMSLQYPA 629
L+ S + R+ +VQ + P +A T +SL A
Sbjct: 275 LIHPDSSNTALSTRLVSVQEDAGKSPARNRSASITNLSLDRSA 317
>ref|XP_002686450.1| PREDICTED: zinc finger, FYVE domain containing 9 [Bos taurus].
Length = 1421
Score = 72.0 bits (175), Expect = 8e-13
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +3
Query: 174 PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRM 320
P WVPD + P CM+C A+F F R+HHCR CGK FC CCS K L M
Sbjct: 690 PVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYM 738
>ref|XP_869045.2| PREDICTED: zinc finger, FYVE domain containing 9 isoform 2 [Bos
taurus].
Length = 1480
Score = 72.0 bits (175), Expect = 8e-13
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +3
Query: 174 PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRM 320
P WVPD + P CM+C A+F F R+HHCR CGK FC CCS K L M
Sbjct: 749 PVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYM 797
>ref|XP_002687251.1| PREDICTED: FYVE, RhoGEF and PH domain containing 6 [Bos taurus].
Length = 1433
Score = 63.9 bits (154), Expect = 2e-10
Identities = 28/68 (41%), Positives = 34/68 (50%)
Frame = +3
Query: 153 SPFGLEEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVD 332
SP G + P W+PD CM C ++F R+HHCR CGK C C S K L +
Sbjct: 1213 SPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYL-KNQ 1271
Query: 333 PVRQCAEC 356
P R C C
Sbjct: 1272 PARVCEHC 1279
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,814,869
Number of extensions: 1074937
Number of successful extensions: 4996
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 4951
Number of HSP's successfully gapped: 40
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003657
(1035 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_868684.1| PREDICTED: similar to zinc finger, FYVE domain ... 453 e-127
Alignment gi|XP_537565.2| PREDICTED: similar to zinc finger, FYVE domain ... 442 e-124
Alignment gi|XP_853227.1| PREDICTED: similar to Zinc finger FYVE domain c... 76 6e-14
Alignment gi|XP_536048.2| PREDICTED: similar to phosphatidylinositol-3-ph... 73 5e-13
Alignment gi|XP_860974.1| PREDICTED: similar to phosphatidylinositol-3-ph... 73 5e-13
Alignment gi|XP_859228.1| PREDICTED: similar to zinc finger, FYVE domain ... 72 9e-13
Alignment gi|XP_532576.2| PREDICTED: similar to Zinc finger FYVE domain c... 72 9e-13
Alignment gi|XP_854794.1| PREDICTED: similar to FYVE, RhoGEF and PH domai... 64 2e-10
Alignment gi|XP_540486.2| PREDICTED: similar to hepatocyte growth factor-... 63 4e-10
Alignment gi|XP_855919.1| PREDICTED: similar to hepatocyte growth factor-... 63 4e-10
>ref|XP_868684.1| PREDICTED: similar to zinc finger, FYVE domain containing 21
isoform 2 [Canis familiaris].
Length = 234
Score = 453 bits (1166), Expect = e-127
Identities = 216/234 (92%), Positives = 224/234 (95%)
Frame = +3
Query: 60 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCGAKFDFL 239
MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQC AKFDFL
Sbjct: 1 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCDAKFDFL 60
Query: 240 TRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECALVSHREAEFFDKQLKVLLSG 419
TRKHHCRRCGKCFCDKCC QKVALRRMCFVDPVRQCAECALVSH+EAEF+DKQLKVLLSG
Sbjct: 61 TRKHHCRRCGKCFCDKCCGQKVALRRMCFVDPVRQCAECALVSHKEAEFYDKQLKVLLSG 120
Query: 420 ATFLVTFGHSEKPETMVCRLSNNQRFLLLDGSSRHEVEIARISAVQMLSEGFPPGGGNAR 599
ATFLVTFG+SEKPETMVCRLSNNQR+L+LDG SRHE+EIARIS VQ+L+EGFPPGGGNAR
Sbjct: 121 ATFLVTFGNSEKPETMVCRLSNNQRYLILDGDSRHEIEIARISTVQILTEGFPPGGGNAR 180
Query: 600 ATGMSLQYPAPGAEGVTQLKLTAGEDANGSRRQATAWLAAMHKAAKLLYESRDQ 761
ATGMSLQY APGAE VTQLKL A EDAN SRRQATAWLAAMHKA KLLYESRDQ
Sbjct: 181 ATGMSLQYAAPGAESVTQLKLRAAEDANASRRQATAWLAAMHKATKLLYESRDQ 234
>ref|XP_537565.2| PREDICTED: similar to zinc finger, FYVE domain containing 21
isoform 1 [Canis familiaris].
Length = 252
Score = 442 bits (1137), Expect = e-124
Identities = 216/252 (85%), Positives = 224/252 (88%), Gaps = 18/252 (7%)
Frame = +3
Query: 60 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCGAKFDFL 239
MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQC AKFDFL
Sbjct: 1 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCDAKFDFL 60
Query: 240 TRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECALVSHREAEFFDKQLKVLLSG 419
TRKHHCRRCGKCFCDKCC QKVALRRMCFVDPVRQCAECALVSH+EAEF+DKQLKVLLSG
Sbjct: 61 TRKHHCRRCGKCFCDKCCGQKVALRRMCFVDPVRQCAECALVSHKEAEFYDKQLKVLLSG 120
Query: 420 ATFLVTFGHSEKPETMVCRLSNNQRFLLLDGSSRHEVEIARISAVQMLSEGFPPG----- 584
ATFLVTFG+SEKPETMVCRLSNNQR+L+LDG SRHE+EIARIS VQ+L+EGFPPG
Sbjct: 121 ATFLVTFGNSEKPETMVCRLSNNQRYLILDGDSRHEIEIARISTVQILTEGFPPGEKDPP 180
Query: 585 -------------GGNARATGMSLQYPAPGAEGVTQLKLTAGEDANGSRRQATAWLAAMH 725
GGNARATGMSLQY APGAE VTQLKL A EDAN SRRQATAWLAAMH
Sbjct: 181 TYTSLLGSQPASEGGNARATGMSLQYAAPGAESVTQLKLRAAEDANASRRQATAWLAAMH 240
Query: 726 KAAKLLYESRDQ 761
KA KLLYESRDQ
Sbjct: 241 KATKLLYESRDQ 252
>ref|XP_853227.1| PREDICTED: similar to Zinc finger FYVE domain containing protein 28
[Canis familiaris].
Length = 127
Score = 75.9 bits (185), Expect = 6e-14
Identities = 31/63 (49%), Positives = 36/63 (57%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
+ P+WVPD+ C C C A F + RKHHCR CGK FC +C S L R V PVR C
Sbjct: 50 DPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVC 109
Query: 348 AEC 356
C
Sbjct: 110 THC 112
>ref|XP_536048.2| PREDICTED: similar to
phosphatidylinositol-3-phosphate/phosphatidylinositol
5-kinase, type III isoform 2 isoform 1 [Canis
familiaris].
Length = 2100
Score = 72.8 bits (177), Expect = 5e-13
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 13/181 (7%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECA 359
W+PD +C C C KF R+HHCR CG+ FC +CC+Q++ + M + +R C C
Sbjct: 156 WMPDSQCKECYDCSEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGYTGDLRACTYCR 215
Query: 360 LVSHREAEFFD-----KQLKVLLSGATFLVTFGHSEKPETMVCRLSNNQRFL-------- 500
++ A D + L L A+ + E + R ++ FL
Sbjct: 216 KIALSYAHSTDSNSIGEDLNALSDSASSVSVLDPGEPRTPVGSRKASRNIFLEDDFAWQS 275
Query: 501 LLDGSSRHEVEIARISAVQMLSEGFPPGGGNARATGMSLQYPAPGAEGVTQLKLTAGEDA 680
L+ S + R+ +VQ + P +A T +SL G+ V+ + + A
Sbjct: 276 LIHPDSSNTPLSTRLVSVQEDAGKSPARNRSASITNLSLD--RSGSPMVSSYETSVSPQA 333
Query: 681 N 683
N
Sbjct: 334 N 334
>ref|XP_860974.1| PREDICTED: similar to
phosphatidylinositol-3-phosphate/phosphatidylinositol
5-kinase, type III isoform 2 isoform 4 [Canis
familiaris].
Length = 2059
Score = 72.8 bits (177), Expect = 5e-13
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 13/181 (7%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECA 359
W+PD +C C C KF R+HHCR CG+ FC +CC+Q++ + M + +R C C
Sbjct: 167 WMPDSQCKECYDCSEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGYTGDLRACTYCR 226
Query: 360 LVSHREAEFFD-----KQLKVLLSGATFLVTFGHSEKPETMVCRLSNNQRFL-------- 500
++ A D + L L A+ + E + R ++ FL
Sbjct: 227 KIALSYAHSTDSNSIGEDLNALSDSASSVSVLDPGEPRTPVGSRKASRNIFLEDDFAWQS 286
Query: 501 LLDGSSRHEVEIARISAVQMLSEGFPPGGGNARATGMSLQYPAPGAEGVTQLKLTAGEDA 680
L+ S + R+ +VQ + P +A T +SL G+ V+ + + A
Sbjct: 287 LIHPDSSNTPLSTRLVSVQEDAGKSPARNRSASITNLSLD--RSGSPMVSSYETSVSPQA 344
Query: 681 N 683
N
Sbjct: 345 N 345
>ref|XP_859228.1| PREDICTED: similar to zinc finger, FYVE domain containing 9 isoform
1 isoform 3 [Canis familiaris].
Length = 1364
Score = 72.0 bits (175), Expect = 9e-13
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +3
Query: 174 PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRM 320
P WVPD + P CM+C A+F F R+HHCR CGK FC CCS K L M
Sbjct: 692 PVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYM 740
>ref|XP_532576.2| PREDICTED: similar to Zinc finger FYVE domain containing protein 9
(Mothers against decapentaplegic homolog interacting
protein) (Madh-interacting protein) (Smad anchor for
receptor activation) (Receptor activation anchor)
(hSARA) (Novel serine protease) (NSP... iso [Canis
familiaris].
Length = 1423
Score = 72.0 bits (175), Expect = 9e-13
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +3
Query: 174 PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRM 320
P WVPD + P CM+C A+F F R+HHCR CGK FC CCS K L M
Sbjct: 692 PVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYM 740
>ref|XP_854794.1| PREDICTED: similar to FYVE, RhoGEF and PH domain containing protein 6
(Zinc finger FYVE domain containing protein 24) [Canis
familiaris].
Length = 1471
Score = 64.3 bits (155), Expect = 2e-10
Identities = 29/74 (39%), Positives = 37/74 (50%)
Frame = +3
Query: 135 EHRAFGSPFGLEEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALR 314
E++ SP G + P W+PD CM C ++F R+HHCR CGK C C S K L
Sbjct: 1256 ENKEEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLD 1315
Query: 315 RMCFVDPVRQCAEC 356
+ P R C C
Sbjct: 1316 YL-KNQPARVCEHC 1328
>ref|XP_540486.2| PREDICTED: similar to hepatocyte growth factor-regulated tyrosine
kinase substrate isoform 1 [Canis familiaris].
Length = 782
Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 132 PEHRAFGSPFGLEE-PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVA 308
PE + + F E P WV +EC RC +F +TRKHHCR CG+ FC KC S+
Sbjct: 143 PEFKESDAMFAAERAPDWVDAEECHRCR---VQFGVVTRKHHCRACGQIFCGKCSSKYST 199
Query: 309 LRRMCFVDPVRQCAECALVSHREAE 383
+ + VR C C +++AE
Sbjct: 200 IPKFGIEKEVRVCEPCYEQLNKKAE 224
>ref|XP_855919.1| PREDICTED: similar to hepatocyte growth factor-regulated tyrosine
kinase substrate isoform 3 [Canis familiaris].
Length = 760
Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 132 PEHRAFGSPFGLEE-PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVA 308
PE + + F E P WV +EC RC +F +TRKHHCR CG+ FC KC S+
Sbjct: 143 PEFKESDAMFAAERAPDWVDAEECHRCR---VQFGVVTRKHHCRACGQIFCGKCSSKYST 199
Query: 309 LRRMCFVDPVRQCAECALVSHREAE 383
+ + VR C C +++AE
Sbjct: 200 IPKFGIEKEVRVCEPCYEQLNKKAE 224
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,311,880
Number of extensions: 1088108
Number of successful extensions: 5039
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 4996
Number of HSP's successfully gapped: 46
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003657
(1035 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076976.1| zinc finger FYVE domain-containing protein 21 i... 421 e-118
Alignment gi|NP_001185882.1| zinc finger FYVE domain-containing protein 2... 410 e-114
Alignment gi|NP_001098721.1| zinc finger FYVE domain-containing protein 1... 77 3e-14
Alignment gi|NP_055548.3| zinc finger FYVE domain-containing protein 16 [... 77 3e-14
Alignment gi|NP_001166130.1| lateral signaling target protein 2 homolog i... 76 6e-14
Alignment gi|NP_001166127.1| lateral signaling target protein 2 homolog i... 76 6e-14
Alignment gi|NP_066023.2| lateral signaling target protein 2 homolog isof... 76 6e-14
Alignment gi|NP_055855.2| 1-phosphatidylinositol-3-phosphate 5-kinase iso... 73 5e-13
Alignment gi|NP_001171471.1| 1-phosphatidylinositol-3-phosphate 5-kinase ... 73 5e-13
Alignment gi|NP_015563.2| zinc finger FYVE domain-containing protein 9 is... 72 8e-13
>ref|NP_076976.1| zinc finger FYVE domain-containing protein 21 isoform 2 [Homo
sapiens].
Length = 234
Score = 421 bits (1082), Expect = e-118
Identities = 201/234 (85%), Positives = 211/234 (90%)
Frame = +3
Query: 60 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCGAKFDFL 239
MSSEV+ARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKEC RCMQC AKFDFL
Sbjct: 1 MSSEVSARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECRRCMQCDAKFDFL 60
Query: 240 TRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECALVSHREAEFFDKQLKVLLSG 419
TRKHHCRRCGKCFCD+CCSQKV LRRMCFVDPVRQCAECALVS +EAEF+DKQLKVLLSG
Sbjct: 61 TRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSLKEAEFYDKQLKVLLSG 120
Query: 420 ATFLVTFGHSEKPETMVCRLSNNQRFLLLDGSSRHEVEIARISAVQMLSEGFPPGGGNAR 599
ATFLVTFG+SEKPETM CRLSNNQR+L LDG S +E+EI IS VQ+L+EGFPPGGGNAR
Sbjct: 121 ATFLVTFGNSEKPETMTCRLSNNQRYLFLDGDSHYEIEIVHISTVQILTEGFPPGGGNAR 180
Query: 600 ATGMSLQYPAPGAEGVTQLKLTAGEDANGSRRQATAWLAAMHKAAKLLYESRDQ 761
ATGM LQY PG EGVTQLKLT ED RRQA AWL AMHKAAKLLYESRDQ
Sbjct: 181 ATGMFLQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMHKAAKLLYESRDQ 234
>ref|NP_001185882.1| zinc finger FYVE domain-containing protein 21 isoform 1 [Homo
sapiens].
Length = 252
Score = 410 bits (1053), Expect = e-114
Identities = 201/252 (79%), Positives = 211/252 (83%), Gaps = 18/252 (7%)
Frame = +3
Query: 60 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCGAKFDFL 239
MSSEV+ARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKEC RCMQC AKFDFL
Sbjct: 1 MSSEVSARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECRRCMQCDAKFDFL 60
Query: 240 TRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECALVSHREAEFFDKQLKVLLSG 419
TRKHHCRRCGKCFCD+CCSQKV LRRMCFVDPVRQCAECALVS +EAEF+DKQLKVLLSG
Sbjct: 61 TRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAECALVSLKEAEFYDKQLKVLLSG 120
Query: 420 ATFLVTFGHSEKPETMVCRLSNNQRFLLLDGSSRHEVEIARISAVQMLSEGFPPG----- 584
ATFLVTFG+SEKPETM CRLSNNQR+L LDG S +E+EI IS VQ+L+EGFPPG
Sbjct: 121 ATFLVTFGNSEKPETMTCRLSNNQRYLFLDGDSHYEIEIVHISTVQILTEGFPPGEKDIH 180
Query: 585 -------------GGNARATGMSLQYPAPGAEGVTQLKLTAGEDANGSRRQATAWLAAMH 725
GGNARATGM LQY PG EGVTQLKLT ED RRQA AWL AMH
Sbjct: 181 AYTSLRGSQPASEGGNARATGMFLQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMH 240
Query: 726 KAAKLLYESRDQ 761
KAAKLLYESRDQ
Sbjct: 241 KAAKLLYESRDQ 252
>ref|NP_001098721.1| zinc finger FYVE domain-containing protein 16 [Homo sapiens].
Length = 1539
Score = 77.0 bits (188), Expect = 3e-14
Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +3
Query: 129 VPEHRAF-GSPFGLEEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKV 305
VPE+ G G ++P WVPD E P CM C KF F R+HHCR CGK FC CC++K
Sbjct: 726 VPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 785
Query: 306 ALRRMCFVDPVRQCAEC 356
L+ + R C C
Sbjct: 786 KLQYL--EKEARVCVVC 800
>ref|NP_055548.3| zinc finger FYVE domain-containing protein 16 [Homo sapiens].
Length = 1539
Score = 77.0 bits (188), Expect = 3e-14
Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +3
Query: 129 VPEHRAF-GSPFGLEEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKV 305
VPE+ G G ++P WVPD E P CM C KF F R+HHCR CGK FC CC++K
Sbjct: 726 VPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 785
Query: 306 ALRRMCFVDPVRQCAEC 356
L+ + R C C
Sbjct: 786 KLQYL--EKEARVCVVC 800
>ref|NP_001166130.1| lateral signaling target protein 2 homolog isoform 1 [Homo
sapiens].
Length = 817
Score = 75.9 bits (185), Expect = 6e-14
Identities = 31/63 (49%), Positives = 36/63 (57%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
+ P+WVPD+ C C C A F + RKHHCR CGK FC +C S L R V PVR C
Sbjct: 740 DPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVC 799
Query: 348 AEC 356
C
Sbjct: 800 THC 802
>ref|NP_001166127.1| lateral signaling target protein 2 homolog isoform 3 [Homo
sapiens].
Length = 857
Score = 75.9 bits (185), Expect = 6e-14
Identities = 31/63 (49%), Positives = 36/63 (57%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
+ P+WVPD+ C C C A F + RKHHCR CGK FC +C S L R V PVR C
Sbjct: 780 DPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVC 839
Query: 348 AEC 356
C
Sbjct: 840 THC 842
>ref|NP_066023.2| lateral signaling target protein 2 homolog isoform 2 [Homo
sapiens].
Length = 887
Score = 75.9 bits (185), Expect = 6e-14
Identities = 31/63 (49%), Positives = 36/63 (57%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
+ P+WVPD+ C C C A F + RKHHCR CGK FC +C S L R V PVR C
Sbjct: 810 DPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVC 869
Query: 348 AEC 356
C
Sbjct: 870 THC 872
>ref|NP_055855.2| 1-phosphatidylinositol-3-phosphate 5-kinase isoform 2 [Homo
sapiens].
Length = 2098
Score = 72.8 bits (177), Expect = 5e-13
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECA 359
W+PD +C C C KF R+HHCR CG+ FC +CC+Q++ + M + +R C C
Sbjct: 155 WMPDSQCKECYDCSEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGYTGDLRACTYCR 214
Query: 360 LVSHREAEFFD-----KQLKVLLSGATFLVTFGHSEKPETMVCRLSNNQRFL-------- 500
++ A D + L L A + SE + R ++ FL
Sbjct: 215 KIALSYAHSTDSNSIGEDLNALSDSACSVSVLDPSEPRTPVGSRKASRNIFLEDDLAWQS 274
Query: 501 LLDGSSRHEVEIARISAVQMLSEGFPPGGGNARATGMSL 617
L+ S + R+ +VQ + P +A T +SL
Sbjct: 275 LIHPDSSNTPLSTRLVSVQEDAGKSPARNRSASITNLSL 313
>ref|NP_001171471.1| 1-phosphatidylinositol-3-phosphate 5-kinase isoform 4 [Homo
sapiens].
Length = 548
Score = 72.8 bits (177), Expect = 5e-13
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECA 359
W+PD +C C C KF R+HHCR CG+ FC +CC+Q++ + M + +R C C
Sbjct: 155 WMPDSQCKECYDCSEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGYTGDLRACTYCR 214
Query: 360 LVSHREAEFFD-----KQLKVLLSGATFLVTFGHSEKPETMVCRLSNNQRFL-------- 500
++ A D + L L A + SE + R ++ FL
Sbjct: 215 KIALSYAHSTDSNSIGEDLNALSDSACSVSVLDPSEPRTPVGSRKASRNIFLEDDLAWQS 274
Query: 501 LLDGSSRHEVEIARISAVQMLSEGFPPGGGNARATGMSL 617
L+ S + R+ +VQ + P +A T +SL
Sbjct: 275 LIHPDSSNTPLSTRLVSVQEDAGKSPARNRSASITNLSL 313
>ref|NP_015563.2| zinc finger FYVE domain-containing protein 9 isoform 1 [Homo
sapiens].
Length = 1366
Score = 72.0 bits (175), Expect = 8e-13
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +3
Query: 174 PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRM 320
P WVPD + P CM+C A+F F R+HHCR CGK FC CCS K L M
Sbjct: 694 PVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYM 742
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,484,101
Number of extensions: 1063841
Number of successful extensions: 5086
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 5025
Number of HSP's successfully gapped: 39
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003657
(1035 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081028.3| zinc finger FYVE domain-containing protein 21 [... 418 e-117
Alignment gi|NP_001015039.1| lateral signaling target protein 2 homolog [... 76 4e-14
Alignment gi|NP_775568.1| zinc finger FYVE domain-containing protein 16 [... 75 6e-14
Alignment gi|NP_035216.2| 1-phosphatidylinositol-3-phosphate 5-kinase [Mu... 73 3e-13
Alignment gi|NP_083136.2| myotubularin-related protein 3 [Mus musculus]. 70 4e-12
Alignment gi|NP_001152800.1| hepatocyte growth factor-regulated tyrosine ... 63 3e-10
Alignment gi|NP_032270.3| hepatocyte growth factor-regulated tyrosine kin... 63 3e-10
Alignment gi|NP_573478.1| myotubularin-related protein 4 [Mus musculus]. 63 4e-10
Alignment gi|NP_444302.4| FYVE, RhoGEF and PH domain-containing protein 6... 62 7e-10
Alignment gi|NP_766470.2| WD repeat and FYVE domain-containing protein 3 ... 61 1e-09
>ref|NP_081028.3| zinc finger FYVE domain-containing protein 21 [Mus musculus].
Length = 234
Score = 418 bits (1075), Expect = e-117
Identities = 198/234 (84%), Positives = 211/234 (90%)
Frame = +3
Query: 60 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCGAKFDFL 239
MSS VAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQC AKFDF+
Sbjct: 1 MSSGVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCDAKFDFI 60
Query: 240 TRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECALVSHREAEFFDKQLKVLLSG 419
TRKHHCRRCGKCFCD+CCSQKV LRRMCFVDPVRQCA+CALVSHREAEF+DKQLKVLLSG
Sbjct: 61 TRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCADCALVSHREAEFYDKQLKVLLSG 120
Query: 420 ATFLVTFGHSEKPETMVCRLSNNQRFLLLDGSSRHEVEIARISAVQMLSEGFPPGGGNAR 599
ATFLVTFG SEKPETMVCRLSNNQR L+LDG S E+EIA + VQ+L+EGF PG G+ R
Sbjct: 121 ATFLVTFGDSEKPETMVCRLSNNQRCLVLDGDSHREIEIAHVCTVQILTEGFTPGAGSTR 180
Query: 600 ATGMSLQYPAPGAEGVTQLKLTAGEDANGSRRQATAWLAAMHKAAKLLYESRDQ 761
ATGM LQY PGAE QL+L AGEDA+GS+RQA AWLAAMHKA KLLYESRDQ
Sbjct: 181 ATGMLLQYTVPGAEAAAQLRLMAGEDASGSKRQAAAWLAAMHKATKLLYESRDQ 234
>ref|NP_001015039.1| lateral signaling target protein 2 homolog [Mus musculus].
Length = 905
Score = 76.3 bits (186), Expect = 4e-14
Identities = 31/63 (49%), Positives = 36/63 (57%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
+ P+WVPD+ C C C A F + RKHHCR CGK FC +C S L R V PVR C
Sbjct: 828 DPPEWVPDEACGFCTSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVC 887
Query: 348 AEC 356
C
Sbjct: 888 THC 890
>ref|NP_775568.1| zinc finger FYVE domain-containing protein 16 [Mus musculus].
Length = 1528
Score = 75.5 bits (184), Expect = 6e-14
Identities = 31/65 (47%), Positives = 38/65 (58%)
Frame = +3
Query: 162 GLEEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVR 341
G ++P WVPD E P CM C KF F R+HHCR CGK FC CC++K L+ + R
Sbjct: 726 GQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL--EKEAR 783
Query: 342 QCAEC 356
C C
Sbjct: 784 VCVIC 788
>ref|NP_035216.2| 1-phosphatidylinositol-3-phosphate 5-kinase [Mus musculus].
Length = 2052
Score = 73.2 bits (178), Expect = 3e-13
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECA 359
W+PD +C C C KF R+HHCR CG+ FC +CC+Q++ + M + +R C C
Sbjct: 166 WMPDSQCKECYDCSEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGYTGDLRACTYCR 225
Query: 360 LVSHREAEFFDK----QLKVLLSGATFLVTFGHSEKPETMV-CRLSNNQRFL-------- 500
++ A D + LS +T V+ +P T V R ++ FL
Sbjct: 226 KIALSYAHSTDSNSIGEDLNALSDSTCSVSILDPSEPRTPVGSRKASRNIFLEDDLAWQS 285
Query: 501 LLDGSSRHEVEIARISAVQMLSEGFPPGGGNARATGMSL 617
L+ S + R+ +VQ + P +A T +SL
Sbjct: 286 LIHPDSSNSALSTRLVSVQEDAGKSPARNRSASITNLSL 324
>ref|NP_083136.2| myotubularin-related protein 3 [Mus musculus].
Length = 1159
Score = 69.7 bits (169), Expect = 4e-12
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +3
Query: 147 FGSPFGLEE-PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMC 323
F FG E +W+PD C C + F +RKHHCR CG FC CC+QKV +
Sbjct: 1065 FNGDFGDEVMTRWLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQ 1124
Query: 324 FVDPVRQCAECALVSHREAEFFDKQL 401
+P R C C H + D +L
Sbjct: 1125 LFEPSRVCKSCYSSLHPTSSSIDLEL 1150
>ref|NP_001152800.1| hepatocyte growth factor-regulated tyrosine kinase substrate
isoform 1 [Mus musculus].
Length = 776
Score = 63.2 bits (152), Expect = 3e-10
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 132 PEHRAFGSPFGLEE-PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVA 308
PE + + F E P WV +EC RC +F +TRKHHCR CG+ FC KC S+
Sbjct: 143 PEFKESDAMFAAERAPDWVDAEECHRCR---VQFGVVTRKHHCRACGQIFCGKCSSKYST 199
Query: 309 LRRMCFVDPVRQCAECALVSHREAE 383
+ + VR C C +++AE
Sbjct: 200 IPKFGIEKEVRVCEPCYEQLNKKAE 224
>ref|NP_032270.3| hepatocyte growth factor-regulated tyrosine kinase substrate
isoform 2 [Mus musculus].
Length = 775
Score = 63.2 bits (152), Expect = 3e-10
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 132 PEHRAFGSPFGLEE-PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVA 308
PE + + F E P WV +EC RC +F +TRKHHCR CG+ FC KC S+
Sbjct: 143 PEFKESDAMFAAERAPDWVDAEECHRCR---VQFGVVTRKHHCRACGQIFCGKCSSKYST 199
Query: 309 LRRMCFVDPVRQCAECALVSHREAE 383
+ + VR C C +++AE
Sbjct: 200 IPKFGIEKEVRVCEPCYEQLNKKAE 224
>ref|NP_573478.1| myotubularin-related protein 4 [Mus musculus].
Length = 1190
Score = 62.8 bits (151), Expect = 4e-10
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
E +WVPD C C +F R+HHCR CG FC CC K+ + DPV C
Sbjct: 1102 EVTRWVPDHMASHCFNCDCEFWLAKRRHHCRNCGNVFCAGCCHLKLPIPDQQLYDPVLVC 1161
Query: 348 AEC--ALVSHREAEFFDKQLKVLLSGAT 425
C + R E + LK ++ A+
Sbjct: 1162 NSCYEHIQVSRARELMSQHLKKPIATAS 1189
>ref|NP_444302.4| FYVE, RhoGEF and PH domain-containing protein 6 [Mus musculus].
Length = 1399
Score = 62.0 bits (149), Expect = 7e-10
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Frame = +3
Query: 57 VMSSEVAARRD--------------AKKLVRSPS-GLRMVPEHRAFGSPFGLEEPQWVPD 191
++S+ AA RD K++ PS L E + SP G + P W+PD
Sbjct: 1132 ILSASSAAERDDWLEAISSSIEEYAKKRITFCPSRSLDEDSERKEEVSPLGAKAPIWIPD 1191
Query: 192 KECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVAL 311
CM C ++F R+HHCR CGK C C S K L
Sbjct: 1192 TRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGL 1231
>ref|NP_766470.2| WD repeat and FYVE domain-containing protein 3 [Mus musculus].
Length = 3508
Score = 61.2 bits (147), Expect = 1e-09
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAEC- 356
WV D+ C C +F R+HHCR CG+ FC KC + ++R+ PVR C C
Sbjct: 3433 WVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNCY 3492
Query: 357 -ALVSHREAE 383
+L R AE
Sbjct: 3493 YSLQHERGAE 3502
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,329,933
Number of extensions: 888758
Number of successful extensions: 4744
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4576
Number of HSP's successfully gapped: 28
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003657
(1035 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128796.1| PREDICTED: zinc finger FYVE domain-containin... 345 2e-95
Alignment gi|XP_003123797.2| PREDICTED: zinc finger FYVE domain-containin... 76 3e-14
Alignment gi|XP_003128863.2| PREDICTED: lateral signaling target protein ... 75 5e-14
Alignment gi|XP_003359678.1| PREDICTED: 1-phosphatidylinositol-3-phosphat... 74 2e-13
Alignment gi|XP_003128037.1| PREDICTED: zinc finger FYVE domain-containin... 72 5e-13
Alignment gi|XP_003356515.1| PREDICTED: zinc finger FYVE domain-containin... 72 5e-13
Alignment gi|XP_001926554.2| PREDICTED: myotubularin-related protein 3 [S... 69 3e-12
Alignment gi|XP_003126762.2| PREDICTED: FYVE, RhoGEF and PH domain-contai... 64 1e-10
Alignment gi|XP_003133672.2| PREDICTED: 1-phosphatidylinositol-3-phosphat... 64 2e-10
Alignment gi|XP_003131704.2| PREDICTED: myotubularin-related protein 4-li... 62 4e-10
>ref|XP_003128796.1| PREDICTED: zinc finger FYVE domain-containing protein 21-like [Sus
scrofa].
Length = 185
Score = 345 bits (885), Expect = 2e-95
Identities = 183/234 (78%), Positives = 185/234 (79%)
Frame = +3
Query: 60 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPDKECPRCMQCGAKFDFL 239
MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPD
Sbjct: 1 MSSEVAARRDAKKLVRSPSGLRMVPEHRAFGSPFGLEEPQWVPD---------------- 44
Query: 240 TRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECALVSHREAEFFDKQLKVLLSG 419
++CAECALVSHREAEFFDKQLKVLLSG
Sbjct: 45 ---------------------------------KECAECALVSHREAEFFDKQLKVLLSG 71
Query: 420 ATFLVTFGHSEKPETMVCRLSNNQRFLLLDGSSRHEVEIARISAVQMLSEGFPPGGGNAR 599
ATFLVTFGHSEKPETMVCRLSNNQRFLLLDGSSRHEVEIARISAVQMLSEGFPPGGGNAR
Sbjct: 72 ATFLVTFGHSEKPETMVCRLSNNQRFLLLDGSSRHEVEIARISAVQMLSEGFPPGGGNAR 131
Query: 600 ATGMSLQYPAPGAEGVTQLKLTAGEDANGSRRQATAWLAAMHKAAKLLYESRDQ 761
ATGMSLQYPAPGAEGVTQLKLTAGEDANGSRRQATAWLAAMHKAAKLLYESRDQ
Sbjct: 132 ATGMSLQYPAPGAEGVTQLKLTAGEDANGSRRQATAWLAAMHKAAKLLYESRDQ 185
>ref|XP_003123797.2| PREDICTED: zinc finger FYVE domain-containing protein 16 [Sus
scrofa].
Length = 1664
Score = 76.3 bits (186), Expect = 3e-14
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = +3
Query: 150 GSPFGLEEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFV 329
G G ++P WVPD E P CM C KF F R+HHCR CGK FC CC++K L+ +
Sbjct: 740 GLLLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL--E 797
Query: 330 DPVRQCAEC 356
R C C
Sbjct: 798 KEARVCVVC 806
>ref|XP_003128863.2| PREDICTED: lateral signaling target protein 2 homolog [Sus scrofa].
Length = 862
Score = 75.5 bits (184), Expect = 5e-14
Identities = 33/66 (50%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 162 GLEEP-QWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPV 338
GLE+P +WVPD+ C C C A F + RKHHCR CGK FC +C L R V PV
Sbjct: 782 GLEDPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSPHSAPLPRYGQVKPV 841
Query: 339 RQCAEC 356
R C C
Sbjct: 842 RVCTHC 847
>ref|XP_003359678.1| PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase-like,
partial [Sus scrofa].
Length = 582
Score = 73.6 bits (179), Expect = 2e-13
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 13/183 (7%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQCAECA 359
W+PD +C C C KF R+HHCR CG+ FC +CC+Q++ + M + +R C C
Sbjct: 155 WMPDSQCKECYDCNEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGYTGDLRACTYCR 214
Query: 360 LVSHREAEFFD-----KQLKVLLSGATFLVTFGHSEKPETMVCRLSNNQRFL-------- 500
++ A D + L L + + SE + R ++ FL
Sbjct: 215 KIALSYAHSTDSNSIGEDLNALSDSTSSVSVLDPSEPRTPVGSRKASRNIFLEDDFAWQS 274
Query: 501 LLDGSSRHEVEIARISAVQMLSEGFPPGGGNARATGMSLQYPAPGAEGVTQLKLTAGEDA 680
L+ S + R+ +VQ + P +A T +SL G+ V + + A
Sbjct: 275 LIHPDSSNTALSTRLVSVQEDAGKSPARNRSASITNLSLD--RSGSPMVPSYETSVSPQA 332
Query: 681 NGS 689
N S
Sbjct: 333 NRS 335
>ref|XP_003128037.1| PREDICTED: zinc finger FYVE domain-containing protein 9 isoform 1
[Sus scrofa].
Length = 1422
Score = 72.0 bits (175), Expect = 5e-13
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +3
Query: 174 PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRM 320
P WVPD + P CM+C A+F F R+HHCR CGK FC CCS K L M
Sbjct: 691 PVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYM 739
>ref|XP_003356515.1| PREDICTED: zinc finger FYVE domain-containing protein 9 isoform 2
[Sus scrofa].
Length = 1363
Score = 72.0 bits (175), Expect = 5e-13
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +3
Query: 174 PQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRM 320
P WVPD + P CM+C A+F F R+HHCR CGK FC CCS K L M
Sbjct: 691 PVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYM 739
>ref|XP_001926554.2| PREDICTED: myotubularin-related protein 3 [Sus scrofa].
Length = 1195
Score = 69.3 bits (168), Expect = 3e-12
Identities = 29/78 (37%), Positives = 38/78 (48%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
E +W+PD C C + F +RKHHCR CG FC CC+QKV + +P R C
Sbjct: 1109 EMTRWLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQLFEPSRVC 1168
Query: 348 AECALVSHREAEFFDKQL 401
C H + D +L
Sbjct: 1169 KSCYSSLHPTSSSIDLEL 1186
>ref|XP_003126762.2| PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6-like
[Sus scrofa].
Length = 432
Score = 64.3 bits (155), Expect = 1e-10
Identities = 31/82 (37%), Positives = 40/82 (48%)
Frame = +3
Query: 153 SPFGLEEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVD 332
SP G + P W+PD CM C ++F R+HHCR CGK C C S K L +
Sbjct: 212 SPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYL-KNQ 270
Query: 333 PVRQCAECALVSHREAEFFDKQ 398
P R C C ++E + D Q
Sbjct: 271 PARVCEHC----YQELQKLDHQ 288
>ref|XP_003133672.2| PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase [Sus
scrofa].
Length = 1549
Score = 63.5 bits (153), Expect = 2e-10
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +3
Query: 180 WVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKV 305
W+PD +C C C KF R+HHCR CG+ FC +CC+Q++
Sbjct: 155 WMPDSQCKECYDCNEKFTTFRRRHHCRLCGQIFCSRCCNQEI 196
>ref|XP_003131704.2| PREDICTED: myotubularin-related protein 4-like [Sus scrofa].
Length = 1319
Score = 62.4 bits (150), Expect = 4e-10
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +3
Query: 168 EEPQWVPDKECPRCMQCGAKFDFLTRKHHCRRCGKCFCDKCCSQKVALRRMCFVDPVRQC 347
E +WVPD C C +F R+HHCR CG FC CC K+ + DPV C
Sbjct: 1231 EVTRWVPDHMASHCYNCDCEFWLAKRRHHCRNCGNVFCAGCCHLKLPIPDQQLYDPVLVC 1290
Query: 348 AEC--ALVSHREAEFFDKQLKVLLSGAT 425
C + R E + LK ++ A+
Sbjct: 1291 NSCYEHIQVSRARELMSQHLKKPIATAS 1318
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,213,641
Number of extensions: 715903
Number of successful extensions: 3187
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 3158
Number of HSP's successfully gapped: 27
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003657
(1035 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 551 e-154
>Sscrofa_Chr07
|| Length = 134764511
Score = 551 bits (278), Expect = e-154
Identities = 293/298 (98%)
Strand = Plus / Minus
Query: 727 aggccgccaagctcctctacgagtctcgggaccagtagctgcaggcgggctggaccccgc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130821991 aggccgccaagctcctctacgagtctcgggaccagtagctgcaggcgggctggaccccgc 130821932
Query: 787 gccgggcggtggcgcctgctctctgagcgcgtgcacgcgggcgtgactaaccccacacgt 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130821931 gccgggcggtggcgcctgctctctgagcgcgtgcacgcgggcgtgactaaccccacacgt 130821872
Query: 847 gctggaaacgcagctcaagtattcattcggcgcttacctagtgcaatatggagacggctg 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130821871 gctggaaacgcagctcaagtattcattcggcgcttacctagtgcaatatggagacggctg 130821812
Query: 907 attaacggagctcatgctttatttagagtggggtatcgggatacttaatcaggggtggga 966
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 130821811 attaacggagctcatgctttatttagagtgggttatcgtgatacttaatcaggggtggga 130821752
Query: 967 gagcccgaactacactactgctgaactgtttttagcataatctcttacatgtctttac 1024
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 130821751 gagcccgagctacactactgctgaactgtttttagcataatctctaccatgtctttac 130821694
Score = 307 bits (155), Expect = 6e-81
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 43 agctgtggggcggcgtcatgtcctccgaggtggccgcgcgccgcgatgccaagaagctgg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130829271 agctgtggggcggcgtcatgtcctccgaggtggccgcgcgccgcgatgccaagaagctgg 130829212
Query: 103 tgcgctcccccagcggcctgcgcatggtgccggagcaccgcgccttcggcagcccgttcg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130829211 tgcgctcccccagcggcctgcgcatggtgccggagcaccgcgccttcggcagcccgttcg 130829152
Query: 163 gcctggaggagccgcagtgggtcccggacaaggag 197
|||||||||||||||||||||||||||||||||||
Sbjct: 130829151 gcctggaggagccgcagtgggtcccggacaaggag 130829117
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 584 aggaggcaacgcgcgggccacgggcatgtccctgcagtacccagcaccgggggcagaggg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130822231 aggaggcaacgcgcgggccacgggcatgtccctgcagtacccagcaccgggggcagaggg 130822172
Query: 644 cgtgacgcagctgaagctgacggccggggaggacgcaaatggcagcaggaggcaggcgac 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130822171 cgtgacgcagctgaagctgacggccggggaggacgcaaatggcagcaggaggcaggcgac 130822112
Query: 704 agcgtggctggcagccatgcacaagg 729
||||||||||||||||||||||||||
Sbjct: 130822111 agcgtggctggcagccatgcacaagg 130822086
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 492 agattcttgcttctggacgggagcagccgccacgaggtggagatcgcccgcatttccgcc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130823992 agattcttgcttctggacgggagcagccgccacgaggtggagatcgcccgcatttccgcc 130823933
Query: 552 gtgcagatgctcagcgaaggcttccctcccggagg 586
|||||||||||||||||||||||||||||||||||
Sbjct: 130823932 gtgcagatgctcagcgaaggcttccctcccggagg 130823898
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 337 tgcggcagtgcgcggagtgcgccctggtgtcgcaccgggaggccgagttcttcgacaagc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130824411 tgcggcagtgcgcggagtgcgccctggtgtcgcaccgggaggccgagttcttcgacaagc 130824352
Query: 397 agctcaaggtgctcctgagcgg 418
||||||||||||||||||||||
Sbjct: 130824351 agctcaaggtgctcctgagcgg 130824330
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 417 ggagccaccttcctcgtcactttcggccactcggagaaaccggaaacgatggtgtgtcgc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130824166 ggagccaccttcctcgtcactttcggccactcggagaaaccggaaacgatggtgtgtcgc 130824107
Query: 477 ctttccaacaaccagag 493
|||||||||||||||||
Sbjct: 130824106 ctttccaacaaccagag 130824090
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,681,106
Number of extensions: 95
Number of successful extensions: 95
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 6
Length of query: 1035
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1014
Effective length of database: 2,808,413,156
Effective search space: 2847730940184
Effective search space used: 2847730940184
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)