Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003660
(2927 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076070.1| ubiquitin protein ligase E3 component n-reco... 763 0.0
>ref|NP_001076070.1| ubiquitin protein ligase E3 component n-recognin 7 (putative) [Bos
taurus].
Length = 425
Score = 763 bits (1970), Expect = 0.0
Identities = 366/425 (86%), Positives = 377/425 (88%)
Frame = +1
Query: 67 MAGAEGTAGRQXXXXXXXXXXXXXXXXXXXXNEACAVLGGSDSEKCSYSQGSVKRQALYA 246
MAGAE AGRQ NEACAVLGGSDSEKCSYSQGSVKRQALYA
Sbjct: 1 MAGAEEPAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 60
Query: 247 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 426
CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI
Sbjct: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 120
Query: 427 NSSNKYNDNFFGLYCICKRPYXXXXXXXXXXMIQCVVCEDWFHGRHLGAAPPESGDFQEM 606
NS NKYNDNFFGLYCICKRPY MIQC+VCEDWFHGRHLGA PPESGDFQEM
Sbjct: 121 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCIVCEDWFHGRHLGAIPPESGDFQEM 180
Query: 607 VCQACMKRCSFLWAYAAQLAVTKGTAEEDGLVLNVDGVGDQEALQPENGAHQDGAPKEDV 786
VCQACMKRCSFLWAYAAQLAVTK T E+DGLVLNVDGVGDQE ++ ENGAHQD A +EDV
Sbjct: 181 VCQACMKRCSFLWAYAAQLAVTKVTTEDDGLVLNVDGVGDQEVIKTENGAHQDNALEEDV 240
Query: 787 SEHGQAAVRAVKAEPTNEPCTSSSSESDLQTAFKNQHLNTESQSGCKLQAFKAKQFIKKD 966
EHG+A V+ VKAE TNEPCTSSSSESDLQ AF+NQHLNTESQSGCKL+ KAKQFIKKD
Sbjct: 241 PEHGKAIVKEVKAEQTNEPCTSSSSESDLQKAFQNQHLNTESQSGCKLEELKAKQFIKKD 300
Query: 967 TATYWPVNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT 1146
TATYWP+NWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT
Sbjct: 301 TATYWPLNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT 360
Query: 1147 LNSMNRVQQVELICEYNDLKTGLKDYLQRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 1326
LNSMNRVQQVELICEYNDLKT LKDYL+RFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
Sbjct: 361 LNSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 420
Query: 1327 QYYCS 1341
QYYCS
Sbjct: 421 QYYCS 425
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 112,887,626
Number of extensions: 3160943
Number of successful extensions: 12256
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12223
Number of HSP's successfully gapped: 1
Length of query: 975
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 863
Effective length of database: 13,975,518
Effective search space: 12060872034
Effective search space used: 12060872034
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003660
(2927 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537540.2| PREDICTED: similar to Protein C14orf130 isoform... 760 0.0
Alignment gi|XP_868479.1| PREDICTED: similar to Protein C14orf130 isoform... 730 0.0
Alignment gi|XP_868482.1| PREDICTED: similar to Protein C14orf130 isoform... 716 0.0
Alignment gi|XP_868476.1| PREDICTED: similar to Protein C14orf130 isoform... 356 8e-98
Alignment gi|XP_868469.1| PREDICTED: hypothetical protein XP_863376 isofo... 111 5e-24
>ref|XP_537540.2| PREDICTED: similar to Protein C14orf130 isoform 1 [Canis familiaris].
Length = 425
Score = 760 bits (1962), Expect = 0.0
Identities = 365/425 (85%), Positives = 376/425 (88%)
Frame = +1
Query: 67 MAGAEGTAGRQXXXXXXXXXXXXXXXXXXXXNEACAVLGGSDSEKCSYSQGSVKRQALYA 246
MAGAEG AGRQ NEACAVLGGSDSEKCSYSQGSVKRQALYA
Sbjct: 1 MAGAEGPAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 60
Query: 247 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 426
CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI
Sbjct: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 120
Query: 427 NSSNKYNDNFFGLYCICKRPYXXXXXXXXXXMIQCVVCEDWFHGRHLGAAPPESGDFQEM 606
NS NKYNDNFFGLYCICKRPY MIQCVVCEDWFHGRHLGA PPESGDFQEM
Sbjct: 121 NSGNKYNDNFFGLYCICKRPYPDPDDEIPDEMIQCVVCEDWFHGRHLGATPPESGDFQEM 180
Query: 607 VCQACMKRCSFLWAYAAQLAVTKGTAEEDGLVLNVDGVGDQEALQPENGAHQDGAPKEDV 786
VCQACMKRCSFLWAYAAQLAVTK +AE+DGLVLNVDG+GDQE L+PENG HQD KEDV
Sbjct: 181 VCQACMKRCSFLWAYAAQLAVTKVSAEDDGLVLNVDGIGDQEVLKPENGDHQDSTLKEDV 240
Query: 787 SEHGQAAVRAVKAEPTNEPCTSSSSESDLQTAFKNQHLNTESQSGCKLQAFKAKQFIKKD 966
EHG+ AV+ VKAE T+EPCTSSSSESDLQTAFKNQHLN ESQS CKLQ AKQFIKKD
Sbjct: 241 PEHGKDAVKEVKAEQTSEPCTSSSSESDLQTAFKNQHLNMESQSSCKLQELNAKQFIKKD 300
Query: 967 TATYWPVNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT 1146
TATYWPVNWRSKLCTCKDCMKMYG+LDVLFLTDE+DTVLAYENKGKVDQAADRRDPLMDT
Sbjct: 301 TATYWPVNWRSKLCTCKDCMKMYGELDVLFLTDEHDTVLAYENKGKVDQAADRRDPLMDT 360
Query: 1147 LNSMNRVQQVELICEYNDLKTGLKDYLQRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 1326
LNSM+RVQQVELICEYNDLKT LKDYL+RFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
Sbjct: 361 LNSMDRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 420
Query: 1327 QYYCS 1341
QYYCS
Sbjct: 421 QYYCS 425
>ref|XP_868479.1| PREDICTED: similar to Protein C14orf130 isoform 4 [Canis familiaris].
Length = 421
Score = 730 bits (1884), Expect = 0.0
Identities = 355/429 (82%), Positives = 366/429 (85%), Gaps = 4/429 (0%)
Frame = +1
Query: 67 MAGAEGTAGRQXXXXXXXXXXXXXXXXXXXXNEACAVLGGSDSEKCSYSQGSVKRQALYA 246
MAGAEG AGRQ NEACAVLGGSDSEKCSYSQGSVKRQALYA
Sbjct: 1 MAGAEGPAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 60
Query: 247 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 426
CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI
Sbjct: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 120
Query: 427 NSSNKYNDNFFGLYCICKRPYXXXXXXXXXXMIQCVVCEDWFHGRHLGAAPPESGDFQEM 606
NS NKYNDNFFGLYCICKRPY MIQCVVCEDWFHGRHLGA PPESGDFQEM
Sbjct: 121 NSGNKYNDNFFGLYCICKRPYPDPDDEIPDEMIQCVVCEDWFHGRHLGATPPESGDFQEM 180
Query: 607 VCQACMKRCSFLWAYAAQLAVTKG----TAEEDGLVLNVDGVGDQEALQPENGAHQDGAP 774
VCQACMKRCSFLWAYAAQLAVT T E+DGLVLNVDG+GDQE L+PENG HQD
Sbjct: 181 VCQACMKRCSFLWAYAAQLAVTPSSPPTTLEDDGLVLNVDGIGDQEVLKPENGDHQDSTL 240
Query: 775 KEDVSEHGQAAVRAVKAEPTNEPCTSSSSESDLQTAFKNQHLNTESQSGCKLQAFKAKQF 954
KEDV EHG+ AV+ VKAE T+EPCTSS+ FKNQHLN ESQS CKLQ AKQF
Sbjct: 241 KEDVPEHGKDAVKEVKAEQTSEPCTSST--------FKNQHLNMESQSSCKLQELNAKQF 292
Query: 955 IKKDTATYWPVNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDP 1134
IKKDTATYWPVNWRSKLCTCKDCMKMYG+LDVLFLTDE+DTVLAYENKGKVDQAADRRDP
Sbjct: 293 IKKDTATYWPVNWRSKLCTCKDCMKMYGELDVLFLTDEHDTVLAYENKGKVDQAADRRDP 352
Query: 1135 LMDTLNSMNRVQQVELICEYNDLKTGLKDYLQRFADEGTVVKREDIQQFFEEFQSKKRRR 1314
LMDTLNSM+RVQQVELICEYNDLKT LKDYL+RFADEGTVVKREDIQQFFEEFQSKKRRR
Sbjct: 353 LMDTLNSMDRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRR 412
Query: 1315 VDGMQYYCS 1341
VDGMQYYCS
Sbjct: 413 VDGMQYYCS 421
>ref|XP_868482.1| PREDICTED: similar to Protein C14orf130 isoform 5 [Canis familiaris].
Length = 413
Score = 716 bits (1847), Expect = 0.0
Identities = 349/425 (82%), Positives = 359/425 (84%)
Frame = +1
Query: 67 MAGAEGTAGRQXXXXXXXXXXXXXXXXXXXXNEACAVLGGSDSEKCSYSQGSVKRQALYA 246
MAGAEG AGRQ NEACAVLGGSDSEKCSYSQGSVKRQALYA
Sbjct: 1 MAGAEGPAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 60
Query: 247 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 426
CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI
Sbjct: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 120
Query: 427 NSSNKYNDNFFGLYCICKRPYXXXXXXXXXXMIQCVVCEDWFHGRHLGAAPPESGDFQEM 606
NS NKYNDNFFGLYCICKRPY MIQCVVCEDWFHGRHLGA PPESGDFQEM
Sbjct: 121 NSGNKYNDNFFGLYCICKRPYPDPDDEIPDEMIQCVVCEDWFHGRHLGATPPESGDFQEM 180
Query: 607 VCQACMKRCSFLWAYAAQLAVTKGTAEEDGLVLNVDGVGDQEALQPENGAHQDGAPKEDV 786
VCQACMKRCSFLWAYAAQLAVT + + L+PENG HQD KEDV
Sbjct: 181 VCQACMKRCSFLWAYAAQLAVTPSSPPTTLV------------LKPENGDHQDSTLKEDV 228
Query: 787 SEHGQAAVRAVKAEPTNEPCTSSSSESDLQTAFKNQHLNTESQSGCKLQAFKAKQFIKKD 966
EHG+ AV+ VKAE T+EPCTSSSSESDLQTAFKNQHLN ESQS CKLQ AKQFIKKD
Sbjct: 229 PEHGKDAVKEVKAEQTSEPCTSSSSESDLQTAFKNQHLNMESQSSCKLQELNAKQFIKKD 288
Query: 967 TATYWPVNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT 1146
TATYWPVNWRSKLCTCKDCMKMYG+LDVLFLTDE+DTVLAYENKGKVDQAADRRDPLMDT
Sbjct: 289 TATYWPVNWRSKLCTCKDCMKMYGELDVLFLTDEHDTVLAYENKGKVDQAADRRDPLMDT 348
Query: 1147 LNSMNRVQQVELICEYNDLKTGLKDYLQRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 1326
LNSM+RVQQVELICEYNDLKT LKDYL+RFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
Sbjct: 349 LNSMDRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 408
Query: 1327 QYYCS 1341
QYYCS
Sbjct: 409 QYYCS 413
>ref|XP_868476.1| PREDICTED: similar to Protein C14orf130 isoform 3 [Canis
familiaris].
Length = 251
Score = 356 bits (913), Expect = 8e-98
Identities = 167/200 (83%), Positives = 167/200 (83%)
Frame = +1
Query: 67 MAGAEGTAGRQXXXXXXXXXXXXXXXXXXXXNEACAVLGGSDSEKCSYSQGSVKRQALYA 246
MAGAEG AGRQ NEACAVLGGSDSEKCSYSQGSVKRQALYA
Sbjct: 1 MAGAEGPAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 60
Query: 247 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 426
CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI
Sbjct: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 120
Query: 427 NSSNKYNDNFFGLYCICKRPYXXXXXXXXXXMIQCVVCEDWFHGRHLGAAPPESGDFQEM 606
NS NKYNDNFFGLYCICKRPY MIQCVVCEDWFHGRHLGA PPESGDFQEM
Sbjct: 121 NSGNKYNDNFFGLYCICKRPYPDPDDEIPDEMIQCVVCEDWFHGRHLGATPPESGDFQEM 180
Query: 607 VCQACMKRCSFLWAYAAQLA 666
VCQACMKRCSFLWAYAAQLA
Sbjct: 181 VCQACMKRCSFLWAYAAQLA 200
Score = 104 bits (260), Expect = 4e-22
Identities = 49/53 (92%), Positives = 51/53 (96%)
Frame = +1
Query: 1183 ICEYNDLKTGLKDYLQRFADEGTVVKREDIQQFFEEFQSKKRRRVDGMQYYCS 1341
+ EYNDLKT LKDYL+RFADEGTVVKREDIQQFFEEFQSKKRRRVDGMQYYCS
Sbjct: 199 LAEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGMQYYCS 251
>ref|XP_868469.1| PREDICTED: hypothetical protein XP_863376 isoform 2 [Canis
familiaris].
Length = 100
Score = 111 bits (277), Expect = 5e-24
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1
Query: 520 MIQCVVCEDWFHGRHLGAAPPESGDFQEMVCQACMKRCSFLWAYAAQLA 666
MIQCVVCEDWFHGRHLGA PPESGDFQEMVCQACMKRCSFLWAYAAQLA
Sbjct: 1 MIQCVVCEDWFHGRHLGATPPESGDFQEMVCQACMKRCSFLWAYAAQLA 49
Score = 104 bits (260), Expect = 4e-22
Identities = 49/53 (92%), Positives = 51/53 (96%)
Frame = +1
Query: 1183 ICEYNDLKTGLKDYLQRFADEGTVVKREDIQQFFEEFQSKKRRRVDGMQYYCS 1341
+ EYNDLKT LKDYL+RFADEGTVVKREDIQQFFEEFQSKKRRRVDGMQYYCS
Sbjct: 48 LAEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGMQYYCS 100
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 117,503,060
Number of extensions: 3243704
Number of successful extensions: 12985
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 12943
Number of HSP's successfully gapped: 7
Length of query: 975
Length of database: 18,874,504
Length adjustment: 113
Effective length of query: 862
Effective length of database: 15,107,536
Effective search space: 13022696032
Effective search space used: 13022696032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003660
(2927 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786924.2| putative E3 ubiquitin-protein ligase UBR7 [Homo... 729 0.0
>ref|NP_786924.2| putative E3 ubiquitin-protein ligase UBR7 [Homo sapiens].
Length = 425
Score = 729 bits (1882), Expect = 0.0
Identities = 347/425 (81%), Positives = 363/425 (85%)
Frame = +1
Query: 67 MAGAEGTAGRQXXXXXXXXXXXXXXXXXXXXNEACAVLGGSDSEKCSYSQGSVKRQALYA 246
MAGAEG AGRQ NEACAVLGGSDSEKCSYSQGSVKRQALYA
Sbjct: 1 MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 60
Query: 247 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 426
CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKL PDKAK+
Sbjct: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV 120
Query: 427 NSSNKYNDNFFGLYCICKRPYXXXXXXXXXXMIQCVVCEDWFHGRHLGAAPPESGDFQEM 606
NS NKYNDNFFGLYCICKRPY MIQCVVCEDWFHGRHLGA PPESGDFQEM
Sbjct: 121 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM 180
Query: 607 VCQACMKRCSFLWAYAAQLAVTKGTAEEDGLVLNVDGVGDQEALQPENGAHQDGAPKEDV 786
VCQACMKRCSFLWAYAAQLAVTK + E+DGLV N+DG+GDQE ++PENG HQD KEDV
Sbjct: 181 VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV 240
Query: 787 SEHGQAAVRAVKAEPTNEPCTSSSSESDLQTAFKNQHLNTESQSGCKLQAFKAKQFIKKD 966
E G+ VR VK E +EPC SSSESDLQT FKN+ LN ES+SGCKLQ KAKQ IKKD
Sbjct: 241 PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD 300
Query: 967 TATYWPVNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT 1146
TATYWP+NWRSKLCTC+DCMKMYGDLDVLFLTDEYDTVLAYENKGK+ QA DR DPLMDT
Sbjct: 301 TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT 360
Query: 1147 LNSMNRVQQVELICEYNDLKTGLKDYLQRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 1326
L+SMNRVQQVELICEYNDLKT LKDYL+RFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
Sbjct: 361 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 420
Query: 1327 QYYCS 1341
QYYCS
Sbjct: 421 QYYCS 425
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 115,440,040
Number of extensions: 3201264
Number of successful extensions: 12085
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12036
Number of HSP's successfully gapped: 1
Length of query: 975
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 863
Effective length of database: 14,605,196
Effective search space: 12604284148
Effective search space used: 12604284148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003660
(2927 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079942.1| putative E3 ubiquitin-protein ligase UBR7 [Mus ... 698 0.0
>ref|NP_079942.1| putative E3 ubiquitin-protein ligase UBR7 [Mus musculus].
Length = 425
Score = 698 bits (1802), Expect = 0.0
Identities = 331/425 (77%), Positives = 358/425 (84%)
Frame = +1
Query: 67 MAGAEGTAGRQXXXXXXXXXXXXXXXXXXXXNEACAVLGGSDSEKCSYSQGSVKRQALYA 246
MAGAE Q NEACAVLGGSDSEKCSYSQGSV RQALYA
Sbjct: 1 MAGAESPTECQAELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVGRQALYA 60
Query: 247 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 426
CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDK+K+
Sbjct: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKSKV 120
Query: 427 NSSNKYNDNFFGLYCICKRPYXXXXXXXXXXMIQCVVCEDWFHGRHLGAAPPESGDFQEM 606
NS NKYNDNFFGLYC+CKRPY MIQCVVCEDWFHGRHLGA PPESGDFQEM
Sbjct: 121 NSCNKYNDNFFGLYCVCKRPYPDPEDEVPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM 180
Query: 607 VCQACMKRCSFLWAYAAQLAVTKGTAEEDGLVLNVDGVGDQEALQPENGAHQDGAPKEDV 786
VCQACM+RCSFLWAYAAQLAVT+ +AE+DGL+ N G+GD++ +PENGA QD KED
Sbjct: 181 VCQACMRRCSFLWAYAAQLAVTRISAEDDGLLPNATGMGDEDVSKPENGAPQDNGLKEDA 240
Query: 787 SEHGQAAVRAVKAEPTNEPCTSSSSESDLQTAFKNQHLNTESQSGCKLQAFKAKQFIKKD 966
EHG+ +V VKAE NEPC+SSSSESDLQT FK +++ TE QS C+LQ +AKQF+KKD
Sbjct: 241 PEHGRDSVNEVKAEQKNEPCSSSSSESDLQTVFKKENIKTEPQSSCRLQELQAKQFVKKD 300
Query: 967 TATYWPVNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT 1146
ATYWP+NWRSKLCTC+DCMKMYG+LDVLFLTDE DTVLAYENKGK DQA DRRDPLMDT
Sbjct: 301 AATYWPLNWRSKLCTCQDCMKMYGELDVLFLTDECDTVLAYENKGKNDQATDRRDPLMDT 360
Query: 1147 LNSMNRVQQVELICEYNDLKTGLKDYLQRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 1326
L+SMNRVQQVELICEYNDLKT LKDYL+RFADEGTVVKREDIQQFFEEFQSKKRRRVDG+
Sbjct: 361 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGL 420
Query: 1327 QYYCS 1341
QYYCS
Sbjct: 421 QYYCS 425
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 97,954,906
Number of extensions: 2697096
Number of successful extensions: 9868
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9839
Number of HSP's successfully gapped: 1
Length of query: 975
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 864
Effective length of database: 12,283,563
Effective search space: 10612998432
Effective search space used: 10612998432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003660
(2927 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926874.1| PREDICTED: putative E3 ubiquitin-protein lig... 815 0.0
>ref|XP_001926874.1| PREDICTED: putative E3 ubiquitin-protein ligase UBR7 [Sus scrofa].
Length = 425
Score = 815 bits (2105), Expect = 0.0
Identities = 393/425 (92%), Positives = 394/425 (92%)
Frame = +1
Query: 67 MAGAEGTAGRQXXXXXXXXXXXXXXXXXXXXNEACAVLGGSDSEKCSYSQGSVKRQALYA 246
MAGAEGTAGRQ NEACAVLGGSDSEKCSYSQGSVKRQALYA
Sbjct: 1 MAGAEGTAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 60
Query: 247 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 426
CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI
Sbjct: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKAKI 120
Query: 427 NSSNKYNDNFFGLYCICKRPYXXXXXXXXXXMIQCVVCEDWFHGRHLGAAPPESGDFQEM 606
NSSNKYNDNFFGLYCICKRPY MIQCVVCEDWFHGRHLGAAPPESGDFQEM
Sbjct: 121 NSSNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAAPPESGDFQEM 180
Query: 607 VCQACMKRCSFLWAYAAQLAVTKGTAEEDGLVLNVDGVGDQEALQPENGAHQDGAPKEDV 786
VCQACMKRCSFLWAYAAQLAVTKGTAEEDGLVLNVDGVGDQEALQPENGAHQDGAPKEDV
Sbjct: 181 VCQACMKRCSFLWAYAAQLAVTKGTAEEDGLVLNVDGVGDQEALQPENGAHQDGAPKEDV 240
Query: 787 SEHGQAAVRAVKAEPTNEPCTSSSSESDLQTAFKNQHLNTESQSGCKLQAFKAKQFIKKD 966
SEHGQAAVRAVKAEPTNEPCTSSSSESDLQTAFKNQHLNTESQSGCKLQAFKAKQFIKKD
Sbjct: 241 SEHGQAAVRAVKAEPTNEPCTSSSSESDLQTAFKNQHLNTESQSGCKLQAFKAKQFIKKD 300
Query: 967 TATYWPVNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT 1146
TATYWPVNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT
Sbjct: 301 TATYWPVNWRSKLCTCKDCMKMYGDLDVLFLTDEYDTVLAYENKGKVDQAADRRDPLMDT 360
Query: 1147 LNSMNRVQQVELICEYNDLKTGLKDYLQRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 1326
LNSMNRVQQVELICEYNDLKT LKDYL+RFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
Sbjct: 361 LNSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 420
Query: 1327 QYYCS 1341
QYYCS
Sbjct: 421 QYYCS 425
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 72,680,500
Number of extensions: 2028147
Number of successful extensions: 8035
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8019
Number of HSP's successfully gapped: 1
Length of query: 975
Length of database: 11,343,932
Length adjustment: 109
Effective length of query: 866
Effective length of database: 8,630,159
Effective search space: 7473717694
Effective search space used: 7473717694
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003660
(2927 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 2718 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 2718 bits (1371), Expect = 0.0
Identities = 1422/1436 (99%), Gaps = 4/1436 (0%)
Strand = Plus / Plus
Query: 1492 taacaacagtagccacagtgtttgtgctgatttcataaccagcattcttctttctgactc 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193041 taacaacagtagccacagtgtttgtgctgatttcataaccagcattcttctttctgactc 121193100
Query: 1552 agctaagtgcagcccattccacagagtccagcccccacccccgtctagccggggttcttt 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193101 agctaagtgcagcccattccacagagtccagcccccacccccgtctagccggggttcttt 121193160
Query: 1612 gctcataactttaagatgtttgatttggttttgagaaagtaaaccagtttattttttccc 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193161 gctcataactttaagatgtttgatttggttttgagaaagtaaaccagtttattttttccc 121193220
Query: 1672 gatgatttgttctttagctcccaaatgtgtctgctccgccacagagccgccgtcttccag 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193221 gatgatttgttctttagctcccaaatgtgtctgctccgccacagagccgccgtcttccag 121193280
Query: 1732 gacctgctctgcggggccctgcacttccctgcctccagctccaccctccctggacctccg 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193281 gacctgctctgcggggccctgcacttccctgcctccagctccaccctccctggacctccg 121193340
Query: 1792 cgccccctgatcgcggtgccttgggtcagagcctcctcgagcccgggctgctccttctgc 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193341 cgccccctgatcgcggtgccttgggtcagagcctcctcgagcccgggctgctccttctgc 121193400
Query: 1852 cacatccccgcctcccgagcgaggttcgtcatggcccagaaggggtgtccgagctcgctg 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193401 cacatccccgcctcccgagcgaggttcgtcatggcccagaaggggtgtccgagctcgctg 121193460
Query: 1912 cctccgggcctcccctcctgaggagccaggactgatggctttctggcctagatggctgtc 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193461 cctccgggcctcccctcctgaggagccaggactgatggctttctggcctagatggctgtc 121193520
Query: 1972 acccgcagggagattggctgatggcgggtttgagcaagccaacctttgttacaaatttta 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193521 acccgcagggagattggctgatggcgggtttgagcaagccaacctttgttacaaatttta 121193580
Query: 2032 ctaaacaatttgaagtgaagatttcattcgccctctcctggcactcacgttagggcgtca 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193581 ctaaacaatttgaagtgaagatttcattcgccctctcctggcactcacgttagggcgtca 121193640
Query: 2092 gtactgtcgtgctcgcagggcttcctccaggaaattgccgctgtgctagttcttctctgc 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193641 gtactgtcgtgctcgcagggcttcctccaggaaattgccgctgtgctagttcttctctgc 121193700
Query: 2152 tgcctcgaaaatagaccaggtactaccctgtgaaatctgggctgtttataaagtcctctg 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193701 tgcctcgaaaatagaccaggtactaccctgtgaaatctgggctgtttataaagtcctctg 121193760
Query: 2212 ggtttctttatagtatcagggatattcataagcgtatattaaaagcagacctattttgat 2271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193761 ggtttctttatagtatcagggatattcataagcgtatattaaaagcagacctattttgat 121193820
Query: 2272 agtgttttgttaagaaaatgtaattagaactcccccaaattagtatttttcccctcacat 2331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193821 agtgttttgttaagaaaatgtaattagaactcccccaaattagtatttttcccctcacat 121193880
Query: 2332 ctgtactggggaaaaaagatactggcttggcctacttgtgagcagggcagcgagcgccct 2391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193881 ctgtactggggaaaaaagatactggcttggcctacttgtgagcagggcagcgagcgccct 121193940
Query: 2392 gctttgggagaggcggacaaggccctgggctgcgcaagtgatgagctttctgtatataaa 2451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121193941 gctttgggagaggcggacaaggccctgggctgcgcaagtgatgagctttctgtatataaa 121194000
Query: 2452 tgttcctgtccacagcggagtccctagggaccgggaggccttctttggaagaacctcata 2511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121194001 tgttcctgtccacagcggagtccctagggaccgggaggccttctttggaagaacctcata 121194060
Query: 2512 ggatgttgtgtaacaccccacacttgaggggaagcctttccaggtagcttgaaatctctt 2571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121194061 ggatgttgtgtaacaccccacacttgaggggaagcctttccaggtagcttgaaatctctt 121194120
Query: 2572 taagtcagtccatgtggaaaacaccttttgatgtaaacgaagagccctctgttgccctct 2631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121194121 taagtcagtccatgtggaaaacaccttttgatgtaaacgaagagccctctgttgccctct 121194180
Query: 2632 ccctctagagcaaagtggtctttcctgaccgtagaccacacactttgaggtccgtgacta 2691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121194181 ccctctagagcaaagtggtctttcctgaccgtagaccacacactttgaggtccgtgacta 121194240
Query: 2692 taagcatttgaggccttggggccgcaagtgtatattaatactttttgtgtgtccagcagt 2751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121194241 taagcatttgaggccttggggccgcaagtgtatattaatactttttgtgtgtccagcagt 121194300
Query: 2752 cacgtgcaggtgcccaccgacccctggatgaggtgaactacgcccacagaaagtcatggc 2811
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 121194301 cacgtgcaggtgcccaccgacccctggatgaggtgaactaggcccacagaaagtcagggc 121194360
Query: 2812 cccaaagaactggtacagtccgtgtttcttctgcatcaannnnnnnnaattaaaagatgc 2871
|||||||||||||||||||||||||||| |||||||||| |||| ||||||||
Sbjct: 121194361 cccaaagaactggtacagtccgtgtttc-tctgcatcaa-ccctcccaatt-aaagatgc 121194417
Query: 2872 tcatgaagagtgatgtgtggagctggcaggtcttgtggcccacaggaaatgcttgt 2927
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 121194418 tcatgaagagtgatgtgtggagctggcaggtcttgtgg-ccacaggagatgcttgt 121194472
Score = 430 bits (217), Expect = e-117
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 1 ccgcccctcgcgcccgcttttcccgcctccgccggggctgagcggcggtccgggtgacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121176296 ccgcccctcgcgcccgcttttcccgcctccgccggggctgagcggcggtccgggtgacag 121176355
Query: 61 ttgaggatggctggagccgaggggaccgcggggcggcagtcggagctggagcccgtggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121176356 ttgaggatggctggagccgaggggaccgcggggcggcagtcggagctggagcccgtggta 121176415
Query: 121 tcgttggtcgatgtacttgaggaggacgaggagctggagaatgaggcgtgcgccgtacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121176416 tcgttggtcgatgtacttgaggaggacgaggagctggagaatgaggcgtgcgccgtacta 121176475
Query: 181 ggcggcagcgactccgagaagtgctcctactcgcagg 217
|||||||||||||||||||||||||||||||||||||
Sbjct: 121176476 ggcggcagcgactccgagaagtgctcctactcgcagg 121176512
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 667 gtaaccaaaggaactgcggaagaggatgggttggtactgaatgttgatggagtaggagat 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121185491 gtaaccaaaggaactgcggaagaggatgggttggtactgaatgttgatggagtaggagat 121185550
Query: 727 caggaagctctccagcctgaaaacggggctcatcaagatggtgcccctaaagaggatgtt 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121185551 caggaagctctccagcctgaaaacggggctcatcaagatggtgcccctaaagaggatgtt 121185610
Query: 787 tcggaacatggacaggcggctgtgagggcagtgaaagcagagccgacgaacgaaccgtgc 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121185611 tcggaacatggacaggcggctgtgagggcagtgaaagcagagccgacgaacgaaccgtgc 121185670
Query: 847 accagctctagttctgaatctgacctccag 876
||||||||||||||||||||||||||||||
Sbjct: 121185671 accagctctagttctgaatctgacctccag 121185700
Score = 351 bits (177), Expect = 1e-93
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 1252 gtggttaagagagaagacatccagcagttctttgaagaatttcagtcaaaaaagagaaga 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121192801 gtggttaagagagaagacatccagcagttctttgaagaatttcagtcaaaaaagagaaga 121192860
Query: 1312 agagtggatgggatgcagtattattgcagctagaggggagcaaggcgccttctcatccag 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121192861 agagtggatgggatgcagtattattgcagctagaggggagcaaggcgccttctcatccag 121192920
Query: 1372 gccaatgaagatgccacttactggcccgggaataaaagaggcgtatttcacctttgg 1428
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121192921 gccaatgaagatgccacttactggcccgggaataaaagaggcgtatttcacctttgg 121192977
Score = 325 bits (164), Expect = 8e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 1026 gaaaatgtatggcgacctagatgtcctgttcctgacagatgaatatgacacagttctggc 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121186793 gaaaatgtatggcgacctagatgtcctgttcctgacagatgaatatgacacagttctggc 121186852
Query: 1086 ttatgaaaacaaaggcaaggttgaccaggcagctgacaggagggaccctttaatggacac 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121186853 ttatgaaaacaaaggcaaggttgaccaggcagctgacaggagggaccctttaatggacac 121186912
Query: 1146 tcttaacagcatgaacagagtccagcaagtggaacttatttgtg 1189
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121186913 tcttaacagcatgaacagagtccagcaagtggaacttatttgtg 121186956
Score = 303 bits (153), Expect = 3e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 874 cagacagcatttaagaaccaacatctcaacacagaatcacagtctggctgcaaacttcag 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121185874 cagacagcatttaagaaccaacatctcaacacagaatcacagtctggctgcaaacttcag 121185933
Query: 934 gcgtttaaagctaagcagtttataaagaaagacactgccacctattggcccgtgaactgg 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121185934 gcgtttaaagctaagcagtttataaagaaagacactgccacctattggcccgtgaactgg 121185993
Query: 994 cgtagcaagttgtgtacctgcaaggactgtatg 1026
|||||||||||||||||||||||||||||||||
Sbjct: 121185994 cgtagcaagttgtgtacctgcaaggactgtatg 121186026
Score = 272 bits (137), Expect = 1e-69
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 214 cagggctcagtaaagagacaagcactgtatgcctgtagtacttgcaccccagagggagaa 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121179724 cagggctcagtaaagagacaagcactgtatgcctgtagtacttgcaccccagagggagaa 121179783
Query: 274 gaaccagcaggaatttgcctagcttgcagttatgaatgtcatggaagtcataaactattt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121179784 gaaccagcaggaatttgcctagcttgcagttatgaatgtcatggaagtcataaactattt 121179843
Query: 334 gagctatacacaaaaag 350
|||||||||||||||||
Sbjct: 121179844 gagctatacacaaaaag 121179860
Score = 190 bits (96), Expect = 3e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 412 gataaagcaaagataaattctagcaataagtacaatgacaacttttttggattgtactgc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121181402 gataaagcaaagataaattctagcaataagtacaatgacaacttttttggattgtactgc 121181461
Query: 472 atttgcaagagaccttatcctgatcctgaggatgag 507
||||||||||||||||||||||||||||||||||||
Sbjct: 121181462 atttgcaagagaccttatcctgatcctgaggatgag 121181497
Score = 170 bits (86), Expect = 3e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 582 tgagagcggggacttccaggagatggtgtgccaggcttgcatgaaacgctgttcattctt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121183142 tgagagcggggacttccaggagatggtgtgccaggcttgcatgaaacgctgttcattctt 121183201
Query: 642 gtgggcttatgctgcgcagctggccg 667
||||||||||||||||||||||||||
Sbjct: 121183202 gtgggcttatgctgcgcagctggccg 121183227
Score = 127 bits (64), Expect = 4e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 349 agaaattttcgttgtgattgtggtaacagcaagtttaaaaatttggaatgcaaattattt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121180598 agaaattttcgttgtgattgtggtaacagcaagtttaaaaatttggaatgcaaattattt 121180657
Query: 409 cctg 412
||||
Sbjct: 121180658 cctg 121180661
Score = 111 bits (56), Expect = 2e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 506 agattcccgatgagatgatccagtgtgtagtctgtgaagactggttccatggaagg 561
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Sbjct: 121182857 agattcccgatgagatgatccagtgtgtagtctgtgaagactggttccatggaagg 121182912
Score = 105 bits (53), Expect = 1e-19
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 1189 gaatacaatgacttgaagaccggacttaaagactatctccagagatttgctgatgaaggc 1248
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Sbjct: 121188114 gaatacaatgacttgaagactgaacttaaagactatctcaagagatttgctgatgaaggc 121188173
Query: 1249 acagt 1253
|||||
Sbjct: 121188174 acagt 121188178
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 87,136,319
Number of extensions: 597
Number of successful extensions: 597
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 13
Length of query: 2927
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2905
Effective length of database: 2,808,408,574
Effective search space: 8158426907470
Effective search space used: 8158426907470
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)