Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003663
(1083 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180188.1| max dimerization protein 3 [Bos taurus]. 211 9e-55
Alignment gi|XP_002689064.1| PREDICTED: MAX dimerization protein 3 [Bos t... 211 9e-55
Alignment gi|NP_001069724.1| max dimerization protein 4 [Bos taurus]. 89 9e-18
Alignment gi|NP_001069799.1| max-interacting protein 1 [Bos taurus]. 81 2e-15
Alignment gi|NP_001179309.1| max dimerization protein 1 [Bos taurus]. 74 3e-13
Alignment gi|XP_002691488.1| PREDICTED: MAX dimerization protein 1-like [... 74 3e-13
Alignment gi|NP_001193828.1| max-binding protein MNT [Bos taurus]. 52 7e-07
>ref|NP_001180188.1| max dimerization protein 3 [Bos taurus].
Length = 206
Score = 211 bits (537), Expect = 9e-55
Identities = 121/206 (58%), Positives = 122/206 (59%)
Frame = +2
Query: 74 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
MEPVASNIQV HGYASL LDSGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPVHRRRKRSPQAPGALDSGRS 60
Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
VHNELEKRRRAQLKRCLEQLKQQMPLGADC RYTTLSLLRRARMHIQKLEEQEQRAR+LK
Sbjct: 61 VHNELEKRRRAQLKRCLEQLKQQMPLGADCVRYTTLSLLRRARMHIQKLEEQEQRARQLK 120
Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
E GERE QEELEVDVESLVF
Sbjct: 121 EKLRSKQQSLRRQLEQLRGLGTVGERERLRADSLDSSGLSSERSDSDQEELEVDVESLVF 180
Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
GGEAELLRGFSAGQEHSYSH G WL
Sbjct: 181 GGEAELLRGFSAGQEHSYSHSGSAWL 206
>ref|XP_002689064.1| PREDICTED: MAX dimerization protein 3 [Bos taurus].
Length = 206
Score = 211 bits (537), Expect = 9e-55
Identities = 121/206 (58%), Positives = 122/206 (59%)
Frame = +2
Query: 74 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
MEPVASNIQV HGYASL LDSGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPVHRRRKRSPQAPGALDSGRS 60
Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
VHNELEKRRRAQLKRCLEQLKQQMPLGADC RYTTLSLLRRARMHIQKLEEQEQRAR+LK
Sbjct: 61 VHNELEKRRRAQLKRCLEQLKQQMPLGADCVRYTTLSLLRRARMHIQKLEEQEQRARQLK 120
Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
E GERE QEELEVDVESLVF
Sbjct: 121 EKLRSKQQSLRRQLEQLRGLGTVGERERLRADSLDSSGLSSERSDSDQEELEVDVESLVF 180
Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
GGEAELLRGFSAGQEHSYSH G WL
Sbjct: 181 GGEAELLRGFSAGQEHSYSHSGSAWL 206
>ref|NP_001069724.1| max dimerization protein 4 [Bos taurus].
Length = 209
Score = 88.6 bits (218), Expect = 9e-18
Identities = 59/148 (39%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA+L+ LEQLKQ +PLG D R+TTLSLL+RA+MHI+KLEEQ++RA
Sbjct: 53 NNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRA 112
Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
+KE E+ E EVDVE
Sbjct: 113 LSIKEQLQREHRFLKRRL----------EQLSAQSLERVRTDSTGSAVSTDDSEQEVDVE 162
Query: 602 SLVFG-GEAELLRGFSAGQEHSYSHGGG 682
+ FG GE + + S +H GGG
Sbjct: 163 GMEFGPGELDSVGSGSDVDDHYSLRGGG 190
>ref|NP_001069799.1| max-interacting protein 1 [Bos taurus].
Length = 291
Score = 80.9 bits (198), Expect = 2e-15
Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA L+ CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 130 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 189
Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
+ E GP E E +EE+EVDVE
Sbjct: 190 QHQLE---NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 245
Query: 602 SLVFG-GEAE 628
S F GE +
Sbjct: 246 STEFSHGEVD 255
>ref|NP_001179309.1| max dimerization protein 1 [Bos taurus].
Length = 222
Score = 73.6 bits (179), Expect = 3e-13
Identities = 34/60 (56%), Positives = 48/60 (80%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
S RS HNE+EK RRA L+ CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 56 SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRKA 115
>ref|XP_002691488.1| PREDICTED: MAX dimerization protein 1-like [Bos taurus].
Length = 222
Score = 73.6 bits (179), Expect = 3e-13
Identities = 34/60 (56%), Positives = 48/60 (80%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
S RS HNE+EK RRA L+ CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 56 SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRKA 115
>ref|NP_001193828.1| max-binding protein MNT [Bos taurus].
Length = 585
Score = 52.4 bits (124), Expect = 7e-07
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +2
Query: 248 RSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQ 415
R VHN+LEK RRA LK C E LK+ +P D + + LS+LR A +IQ L+ +E+
Sbjct: 222 REVHNKLEKNRRAHLKECFETLKRNIP-NVDDKKTSNLSVLRTALRYIQSLKRKEK 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,782,978
Number of extensions: 1074249
Number of successful extensions: 6907
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6827
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003663
(1083 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546209.2| PREDICTED: similar to MAX dimerization protein ... 211 1e-54
Alignment gi|XP_865633.1| PREDICTED: similar to MAX dimerization protein ... 183 2e-46
Alignment gi|XP_545921.2| PREDICTED: similar to Max dimerization protein ... 87 2e-17
Alignment gi|XP_852395.1| PREDICTED: similar to MAX interactor 1 isoform ... 80 4e-15
Alignment gi|XP_855458.1| PREDICTED: similar to MAX dimerization protein ... 75 1e-13
Alignment gi|XP_854059.1| PREDICTED: similar to MAX binding protein MNT (... 52 8e-07
>ref|XP_546209.2| PREDICTED: similar to MAX dimerization protein 3 isoform 1 [Canis
familiaris].
Length = 206
Score = 211 bits (537), Expect = 1e-54
Identities = 120/206 (58%), Positives = 124/206 (60%)
Frame = +2
Query: 74 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
MEPVASNIQV HGYASL+ LDSGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLYPHRSPGPVYRRRKRSPQASGALDSGRS 60
Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
VHNELEKRRRAQLKRCLEQLKQQMPLGADCAR TTLSLLR AR+HIQKLEEQEQ+ARRLK
Sbjct: 61 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARSTTLSLLRWARVHIQKLEEQEQQARRLK 120
Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
E AGPGERE QEE+EVDVESLVF
Sbjct: 121 EKLRSKQQSLQRQLEWLRGLAGPGERERPRADSLDSSGLSSERSDSDQEEVEVDVESLVF 180
Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
GGEAELLRGFSAGQEHSYSH WL
Sbjct: 181 GGEAELLRGFSAGQEHSYSHSSSTWL 206
>ref|XP_865633.1| PREDICTED: similar to MAX dimerization protein 3 isoform 2 [Canis
familiaris].
Length = 196
Score = 183 bits (465), Expect = 2e-46
Identities = 110/206 (53%), Positives = 114/206 (55%)
Frame = +2
Query: 74 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
MEPVASNIQV HGYASL+ LDSGR
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLYPHRSPGPVYRRRKRSPQASGALDSGR- 59
Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
RAQLKRCLEQLKQQMPLGADCAR TTLSLLR AR+HIQKLEEQEQ+ARRLK
Sbjct: 60 ---------RAQLKRCLEQLKQQMPLGADCARSTTLSLLRWARVHIQKLEEQEQQARRLK 110
Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
E AGPGERE QEE+EVDVESLVF
Sbjct: 111 EKLRSKQQSLQRQLEWLRGLAGPGERERPRADSLDSSGLSSERSDSDQEEVEVDVESLVF 170
Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
GGEAELLRGFSAGQEHSYSH WL
Sbjct: 171 GGEAELLRGFSAGQEHSYSHSSSTWL 196
>ref|XP_545921.2| PREDICTED: similar to Max dimerization protein 4 isoform 1 [Canis
familiaris].
Length = 209
Score = 87.4 bits (215), Expect = 2e-17
Identities = 43/65 (66%), Positives = 54/65 (83%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA+L+ LEQLKQ +PLG D R+TTLSLL+RA+MHI+KLEEQ++RA
Sbjct: 53 NNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRA 112
Query: 422 RRLKE 436
+KE
Sbjct: 113 LSIKE 117
>ref|XP_852395.1| PREDICTED: similar to MAX interactor 1 isoform b [Canis
familiaris].
Length = 291
Score = 79.7 bits (195), Expect = 4e-15
Identities = 37/65 (56%), Positives = 49/65 (75%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA L+ CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 130 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 189
Query: 422 RRLKE 436
+ E
Sbjct: 190 QHQLE 194
>ref|XP_855458.1| PREDICTED: similar to MAX dimerization protein 1 [Canis
familiaris].
Length = 377
Score = 74.7 bits (182), Expect = 1e-13
Identities = 35/60 (58%), Positives = 48/60 (80%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
S RS HNE+EK RRA L+ CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 56 SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 115
>ref|XP_854059.1| PREDICTED: similar to MAX binding protein MNT (ROX protein) (MYC
antagonist MNT) [Canis familiaris].
Length = 744
Score = 52.4 bits (124), Expect = 8e-07
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +2
Query: 248 RSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQ 415
R VHN+LEK RRA LK C E LK+ +P D + + LS+LR A +IQ L+ +E+
Sbjct: 382 REVHNKLEKNRRAHLKECFETLKRNIP-NVDDKKTSNLSVLRTALRYIQSLKRKEK 436
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,233,390
Number of extensions: 1093384
Number of successful extensions: 7925
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7837
Number of HSP's successfully gapped: 6
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003663
(1083 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112590.1| max dimerization protein 3 isoform a [Homo sapi... 211 7e-55
Alignment gi|NP_001136407.1| max dimerization protein 3 isoform b [Homo s... 144 1e-34
Alignment gi|NP_006445.1| max dimerization protein 4 [Homo sapiens]. 86 6e-17
Alignment gi|NP_005953.4| max-interacting protein 1 isoform a [Homo sapie... 81 2e-15
Alignment gi|NP_569157.2| max-interacting protein 1 isoform b [Homo sapie... 81 2e-15
Alignment gi|NP_001189442.1| max dimerization protein 1 isoform 2 [Homo s... 75 1e-13
Alignment gi|NP_002348.1| max dimerization protein 1 isoform 1 [Homo sapi... 75 1e-13
Alignment gi|NP_001008541.1| max-interacting protein 1 isoform c [Homo sa... 65 1e-10
Alignment gi|NP_001189443.1| max dimerization protein 1 isoform 3 [Homo s... 58 2e-08
Alignment gi|NP_064706.1| max-binding protein MNT [Homo sapiens]. 52 7e-07
>ref|NP_112590.1| max dimerization protein 3 isoform a [Homo sapiens].
Length = 206
Score = 211 bits (538), Expect = 7e-55
Identities = 120/206 (58%), Positives = 124/206 (60%)
Frame = +2
Query: 74 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
MEP+ASNIQV HGYASL DSGRS
Sbjct: 1 MEPLASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRS 60
Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
VHNELEKRRRAQLKRCLE+LKQQMPLGADCARYTTLSLLRRARMHIQKLE+QEQRAR+LK
Sbjct: 61 VHNELEKRRRAQLKRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLK 120
Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
E AG ERE QEELEVDVESLVF
Sbjct: 121 ERLRSKQQSLQRQLEQLRGLAGAAERERLRADSLDSSGLSSERSDSDQEELEVDVESLVF 180
Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
GGEAELLRGF AGQEHSYSHGGG WL
Sbjct: 181 GGEAELLRGFVAGQEHSYSHGGGAWL 206
>ref|NP_001136407.1| max dimerization protein 3 isoform b [Homo sapiens].
Length = 193
Score = 144 bits (364), Expect = 1e-34
Identities = 83/147 (56%), Positives = 87/147 (59%)
Frame = +2
Query: 74 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
MEP+ASNIQV HGYASL DSGRS
Sbjct: 1 MEPLASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRS 60
Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
VHNELEKRRRAQLKRCLE+LKQQMPLGADCARYTTLSLLRRARMHIQKLE+QEQRAR+LK
Sbjct: 61 VHNELEKRRRAQLKRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLK 120
Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGERE 514
E AG ERE
Sbjct: 121 ERLRSKQQSLQRQLEQLRGLAGAAERE 147
>ref|NP_006445.1| max dimerization protein 4 [Homo sapiens].
Length = 209
Score = 85.9 bits (211), Expect = 6e-17
Identities = 42/65 (64%), Positives = 54/65 (83%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA+L+ LEQLKQ +PLG D R+TTLSLL+RA++HI+KLEEQ++RA
Sbjct: 53 NNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKLEEQDRRA 112
Query: 422 RRLKE 436
+KE
Sbjct: 113 LSIKE 117
>ref|NP_005953.4| max-interacting protein 1 isoform a [Homo sapiens].
Length = 228
Score = 80.9 bits (198), Expect = 2e-15
Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA L+ CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 67 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 126
Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
+ E GP E E +EE+EVDVE
Sbjct: 127 QHQLE---NLEREQRFLKWRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 182
Query: 602 SLVFG-GEAE 628
S F GE +
Sbjct: 183 STEFSHGEVD 192
>ref|NP_569157.2| max-interacting protein 1 isoform b [Homo sapiens].
Length = 295
Score = 80.9 bits (198), Expect = 2e-15
Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA L+ CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 134 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 193
Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
+ E GP E E +EE+EVDVE
Sbjct: 194 QHQLE---NLEREQRFLKWRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 249
Query: 602 SLVFG-GEAE 628
S F GE +
Sbjct: 250 STEFSHGEVD 259
>ref|NP_001189442.1| max dimerization protein 1 isoform 2 [Homo sapiens].
Length = 220
Score = 74.7 bits (182), Expect = 1e-13
Identities = 34/60 (56%), Positives = 49/60 (81%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
S RS HNE+EK RRA L+ CLE+LK +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 56 SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 115
>ref|NP_002348.1| max dimerization protein 1 isoform 1 [Homo sapiens].
Length = 221
Score = 74.7 bits (182), Expect = 1e-13
Identities = 34/60 (56%), Positives = 49/60 (81%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
S RS HNE+EK RRA L+ CLE+LK +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 56 SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 115
>ref|NP_001008541.1| max-interacting protein 1 isoform c [Homo sapiens].
Length = 182
Score = 64.7 bits (156), Expect = 1e-10
Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +2
Query: 260 NELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEX 439
N RRA L+ CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 27 NTSTANRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE- 85
Query: 440 XXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG- 616
GP E E +EE+EVDVES F
Sbjct: 86 --NLEREQRFLKWRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSH 142
Query: 617 GEAE 628
GE +
Sbjct: 143 GEVD 146
>ref|NP_001189443.1| max dimerization protein 1 isoform 3 [Homo sapiens].
Length = 211
Score = 57.8 bits (138), Expect = 2e-08
Identities = 26/48 (54%), Positives = 40/48 (83%)
Frame = +2
Query: 278 RRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
RRA L+ CLE+LK +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 58 RRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 105
>ref|NP_064706.1| max-binding protein MNT [Homo sapiens].
Length = 582
Score = 52.4 bits (124), Expect = 7e-07
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +2
Query: 248 RSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQ 415
R VHN+LEK RRA LK C E LK+ +P D + + LS+LR A +IQ L+ +E+
Sbjct: 222 REVHNKLEKNRRAHLKECFETLKRNIP-NVDDKKTSNLSVLRTALRYIQSLKRKEK 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,239,082
Number of extensions: 1046880
Number of successful extensions: 6832
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6772
Number of HSP's successfully gapped: 10
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003663
(1083 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057871.2| max dimerization protein 3 [Mus musculus]. 189 2e-48
Alignment gi|NP_034883.2| max dimerization protein 4 [Mus musculus]. 87 2e-17
Alignment gi|NP_001008543.1| max-interacting protein 1 isoform c [Mus mus... 82 6e-16
Alignment gi|NP_034977.1| max-interacting protein 1 isoform a [Mus muscul... 82 6e-16
Alignment gi|NP_001008542.2| max-interacting protein 1 isoform b [Mus mus... 82 6e-16
Alignment gi|NP_034881.2| max dimerization protein 1 [Mus musculus]. 75 1e-13
Alignment gi|NP_034943.3| max-binding protein MNT [Mus musculus]. 52 6e-07
>ref|NP_057871.2| max dimerization protein 3 [Mus musculus].
Length = 206
Score = 189 bits (481), Expect = 2e-48
Identities = 110/206 (53%), Positives = 117/206 (56%)
Frame = +2
Query: 74 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
MEPVASNIQV HGYASL L+SGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHHSPGTVCRRRKPPLQAPGALNSGRS 60
Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
VHNELEKRRRAQLKRCLEQL+QQMPLG DC RYTTLSLLRRAR+HIQKLEEQEQ+ARRLK
Sbjct: 61 VHNELEKRRRAQLKRCLEQLRQQMPLGVDCTRYTTLSLLRRARVHIQKLEEQEQQARRLK 120
Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
E G ERE QE+LEVDVESLVF
Sbjct: 121 EKLRSKQQSLQQQLEQLQGLPGARERERLRADSLDSSGLSSERSDSDQEDLEVDVESLVF 180
Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
G E ELL+ FSAG+EHSYSH WL
Sbjct: 181 GTETELLQSFSAGREHSYSHSTCAWL 206
>ref|NP_034883.2| max dimerization protein 4 [Mus musculus].
Length = 209
Score = 87.4 bits (215), Expect = 2e-17
Identities = 43/65 (66%), Positives = 54/65 (83%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA+L+ LEQLKQ +PLG D R+TTLSLL+RA+MHI+KLEEQ++RA
Sbjct: 53 NNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRA 112
Query: 422 RRLKE 436
+KE
Sbjct: 113 LSIKE 117
>ref|NP_001008543.1| max-interacting protein 1 isoform c [Mus musculus].
Length = 192
Score = 82.4 bits (202), Expect = 6e-16
Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA L+ CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 31 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 90
Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
+ E GP E E +EE+EVDVE
Sbjct: 91 QHQLE---NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 146
Query: 602 SLVFG-GEAE 628
S F GEA+
Sbjct: 147 STEFSHGEAD 156
>ref|NP_034977.1| max-interacting protein 1 isoform a [Mus musculus].
Length = 228
Score = 82.4 bits (202), Expect = 6e-16
Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA L+ CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 67 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 126
Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
+ E GP E E +EE+EVDVE
Sbjct: 127 QHQLE---NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 182
Query: 602 SLVFG-GEAE 628
S F GEA+
Sbjct: 183 STEFSHGEAD 192
>ref|NP_001008542.2| max-interacting protein 1 isoform b [Mus musculus].
Length = 295
Score = 82.4 bits (202), Expect = 6e-16
Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
+ RS HNELEK RRA L+ CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 134 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 193
Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
+ E GP E E +EE+EVDVE
Sbjct: 194 QHQLE---NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 249
Query: 602 SLVFG-GEAE 628
S F GEA+
Sbjct: 250 STEFSHGEAD 259
>ref|NP_034881.2| max dimerization protein 1 [Mus musculus].
Length = 227
Score = 74.7 bits (182), Expect = 1e-13
Identities = 34/60 (56%), Positives = 49/60 (81%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
S RS HNE+EK RRA L+ CLE+LK +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 55 SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 114
>ref|NP_034943.3| max-binding protein MNT [Mus musculus].
Length = 591
Score = 52.4 bits (124), Expect = 6e-07
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +2
Query: 248 RSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQ 415
R VHN+LEK RRA LK C E LK+ +P D + + LS+LR A +IQ L+ +E+
Sbjct: 224 REVHNKLEKNRRAHLKECFETLKRNIP-NVDDKKTSNLSVLRTALRYIQSLKRKEK 278
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,803,608
Number of extensions: 851570
Number of successful extensions: 5297
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5223
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003663
(1083 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123727.1| PREDICTED: max dimerization protein 3-like [... 231 4e-61
Alignment gi|XP_003354830.1| PREDICTED: max dimerization protein 1-like i... 75 8e-14
Alignment gi|XP_001925312.2| PREDICTED: hypothetical protein LOC100154269... 66 4e-11
Alignment gi|XP_003133229.2| PREDICTED: hypothetical protein LOC100154269... 65 9e-11
Alignment gi|XP_003354831.1| PREDICTED: max dimerization protein 1-like i... 58 1e-08
Alignment gi|XP_003125113.2| PREDICTED: max dimerization protein 1-like [... 56 4e-08
>ref|XP_003123727.1| PREDICTED: max dimerization protein 3-like [Sus scrofa].
Length = 206
Score = 231 bits (590), Expect = 4e-61
Identities = 130/206 (63%), Positives = 130/206 (63%)
Frame = +2
Query: 74 MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
MEPVASNIQV HGYASLF LDSGRS
Sbjct: 1 MEPVASNIQVLLQAAEFLERREREAEHGYASLFPHRSPGPVHRRRRRSPQDPGALDSGRS 60
Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK
Sbjct: 61 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 120
Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
E AGPGERE QEELEVDVESLVF
Sbjct: 121 EKLRSKQQSLRQQLEQLRGLAGPGERERLRADSLDSSGLSSERSDSDQEELEVDVESLVF 180
Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
GGEAELLRGFSAGQEHSYSHGGGVWL
Sbjct: 181 GGEAELLRGFSAGQEHSYSHGGGVWL 206
>ref|XP_003354830.1| PREDICTED: max dimerization protein 1-like isoform 1 [Sus scrofa].
Length = 221
Score = 74.7 bits (182), Expect = 8e-14
Identities = 35/60 (58%), Positives = 48/60 (80%)
Frame = +2
Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
S RS HNE+EK RRA L+ CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 56 SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 115
>ref|XP_001925312.2| PREDICTED: hypothetical protein LOC100154269 isoform 1 [Sus
scrofa].
Length = 281
Score = 65.9 bits (159), Expect = 4e-11
Identities = 53/160 (33%), Positives = 67/160 (41%), Gaps = 1/160 (0%)
Frame = +2
Query: 152 HGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRSVHNELEKRRRAQLKRCLEQLKQQMPL 331
HGYAS F S S N RRA L+ CLE+LK +PL
Sbjct: 91 HGYASTFPSMPSPRMQHSKPPRRLSRAQKHSSGS-SNTSTANRRAHLRLCLERLKVLIPL 149
Query: 332 GADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXXXXXXXXXAGPGER 511
G DC R+TTL LL +A+ HI+KLEE E++++ E GP E
Sbjct: 150 GPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRFLKRRLEQLQGPQEM 206
Query: 512 EXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 628
E +EE+EVDVES F GE +
Sbjct: 207 E-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVD 245
>ref|XP_003133229.2| PREDICTED: hypothetical protein LOC100154269 isoform 2 [Sus
scrofa].
Length = 182
Score = 64.7 bits (156), Expect = 9e-11
Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +2
Query: 260 NELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEX 439
N RRA L+ CLE+LK +PLG DC R+TTL LL +A+ HI+KLEE E++++ E
Sbjct: 27 NTSTANRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE- 85
Query: 440 XXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG- 616
GP E E +EE+EVDVES F
Sbjct: 86 --NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSH 142
Query: 617 GEAE 628
GE +
Sbjct: 143 GEVD 146
>ref|XP_003354831.1| PREDICTED: max dimerization protein 1-like isoform 2 [Sus scrofa].
Length = 211
Score = 57.8 bits (138), Expect = 1e-08
Identities = 27/48 (56%), Positives = 39/48 (81%)
Frame = +2
Query: 278 RRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
RRA L+ CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 58 RRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 105
>ref|XP_003125113.2| PREDICTED: max dimerization protein 1-like [Sus scrofa].
Length = 200
Score = 55.8 bits (133), Expect = 4e-08
Identities = 26/47 (55%), Positives = 38/47 (80%)
Frame = +2
Query: 281 RAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
RA L+ CLE+LK +PLG + R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 48 RAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 94
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,299,634
Number of extensions: 724046
Number of successful extensions: 4702
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4651
Number of HSP's successfully gapped: 6
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003663
(1083 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 900 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 900 bits (454), Expect = 0.0
Identities = 478/485 (98%), Gaps = 2/485 (0%)
Strand = Plus / Minus
Query: 577 agaggagctggaggtggatgtggagagcctggtgttcgggggcgaggctgagctgctacg 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227986 agaggagctggaggtggatgtggagagcctggtgttcgggggcgaggctgagctgctacg 82227927
Query: 637 gggcttcagcgccggccaggagcacagctattcacacggtggtggcgtctggctatgacc 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227926 gggcttcagcgccggccaggagcacagctattcacacggtggtggcgtctggctatgacc 82227867
Query: 697 ttcgttgccggaggggcctctatgctcagaccacccttggctctgcccaactggagtcct 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227866 ttcgttgccggaggggcctctatgctcagaccacccttggctctgcccaactggagtcct 82227807
Query: 757 cgccgagcctccagggctgctgagagtcgcctcctgttggaatggactaaatggaccttg 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227806 cgccgagcctccagggctgctgagagtcgcctcctgttggaatggactaaatggaccttg 82227747
Query: 817 tgtggaaacaggtgctccccctaccctgctgctggctgccggcagcccctcctaggacag 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227746 tgtggaaacaggtgctccccctaccctgctgctggctgccggcagcccctcctaggacag 82227687
Query: 877 agagccctgcggggcaggtggcttgggcccaggctgcccttccaggcatttttagtagca 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227686 agagccctgcggggcaggtggcttgggcccaggctgcccttccaggcatttttagtagca 82227627
Query: 937 cttggctctgctgtccatgggggcagggagccttttgggccctcacgttccttcctagac 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227626 cttggctctgctgtccatgggggcagggagccttttgggccctcacgttccttcctagac 82227567
Query: 997 agggccccgccctgggc--ttgccccacatgtactgttcaatgttttcattaaaagcccc 1054
| || ||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 82227566 aagggcccgcccctggcctttgccccacatgtactgttcagtgttttcattaaaagcccc 82227507
Query: 1055 tttct 1059
|||||
Sbjct: 82227506 tttct 82227502
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 392 cagaaactggaggagcaggagcagcgggcccggcggctcaaggagaagcttcgaagtaag 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82228246 cagaaactggaggagcaggagcagcgggcccggcggctcaaggagaagcttcgaagtaag 82228187
Query: 452 cagcagagcctgcggcagcagctggagcagctcagggggcttgcggggcctggtgagcgt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82228186 cagcagagcctgcggcagcagctggagcagctcagggggcttgcggggcctggtgagcgt 82228127
Query: 512 gagcggctgcgggcagacagcctggactcctcaggcctctcctccgagcgttctgactca 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82228126 gagcggctgcgggcagacagcctggactcctcaggcctctcctccgagcgttctgactca 82228067
Query: 572 gaccaag 578
|||||||
Sbjct: 82228066 gaccaag 82228060
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 1 cattgtaacaaaagtggtgcagccgctcctccggccagcaccgtaggccagcccgccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231523 cattgtaacaaaagtggtgcagccgctcctccggccagcaccgtaggccagcccgccgcc 82231464
Query: 61 agctgtcgcggacatggaacccgtggccagcaatatccaagttctgctgcaggcggccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231463 agctgtcgcggacatggaacccgtggccagcaatatccaagttctgctgcaggcggccga 82231404
Query: 121 gttcctggagcgccgcgagagag 143
|||||||||||||||||||||||
Sbjct: 82231403 gttcctggagcgccgcgagagag 82231381
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 275 cgcaggagggcccagctgaagcggtgcctggagcagctgaagcagcagatgcccctgggg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82230187 cgcaggagggcccagctgaagcggtgcctggagcagctgaagcagcagatgcccctgggg 82230128
Query: 335 gctgactgtgcccgatacaccacactgagccttctgcgcagggccaggatgcacatccag 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82230127 gctgactgtgcccgatacaccacactgagccttctgcgcagggccaggatgcacatccag 82230068
Score = 210 bits (106), Expect = 1e-51
Identities = 109/110 (99%)
Strand = Plus / Minus
Query: 142 agaggcggagcatggctatgcgtccctgtttccgcaccgaagtcctggcccggtccacag 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231117 agaggcggagcatggctatgcgtccctgtttccgcaccgaagtcctggcccggtccacag 82231058
Query: 202 gaggaggcggcggtccccccaagctcctggcgcgctggacagtgggcggt 251
||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 82231057 gaggaggcggcggtccccccaagatcctggcgcgctggacagtgggcggt 82231008
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 249 ggtctgtgcataacgagttggaaaagcgcagg 280
||||||||||||||||||||||||||||||||
Sbjct: 82230343 ggtctgtgcataacgagttggaaaagcgcagg 82230312
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,881,834
Number of extensions: 206
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 6
Length of query: 1083
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1062
Effective length of database: 2,808,413,156
Effective search space: 2982534771672
Effective search space used: 2982534771672
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)