Animal-Genome cDNA 20110601C-003663


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003663
         (1083 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001180188.1| max dimerization protein 3 [Bos taurus].          211   9e-55
Alignment   gi|XP_002689064.1| PREDICTED: MAX dimerization protein 3 [Bos t...   211   9e-55
Alignment   gi|NP_001069724.1| max dimerization protein 4 [Bos taurus].           89   9e-18
Alignment   gi|NP_001069799.1| max-interacting protein 1 [Bos taurus].            81   2e-15
Alignment   gi|NP_001179309.1| max dimerization protein 1 [Bos taurus].           74   3e-13
Alignment   gi|XP_002691488.1| PREDICTED: MAX dimerization protein 1-like [...    74   3e-13
Alignment   gi|NP_001193828.1| max-binding protein MNT [Bos taurus].              52   7e-07

>ref|NP_001180188.1| max dimerization protein 3 [Bos taurus].
          Length = 206

 Score =  211 bits (537), Expect = 9e-55
 Identities = 121/206 (58%), Positives = 122/206 (59%)
 Frame = +2

Query: 74  MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
           MEPVASNIQV                HGYASL                      LDSGRS
Sbjct: 1   MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPVHRRRKRSPQAPGALDSGRS 60

Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
           VHNELEKRRRAQLKRCLEQLKQQMPLGADC RYTTLSLLRRARMHIQKLEEQEQRAR+LK
Sbjct: 61  VHNELEKRRRAQLKRCLEQLKQQMPLGADCVRYTTLSLLRRARMHIQKLEEQEQRARQLK 120

Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
           E                      GERE                    QEELEVDVESLVF
Sbjct: 121 EKLRSKQQSLRRQLEQLRGLGTVGERERLRADSLDSSGLSSERSDSDQEELEVDVESLVF 180

Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
           GGEAELLRGFSAGQEHSYSH G  WL
Sbjct: 181 GGEAELLRGFSAGQEHSYSHSGSAWL 206


>ref|XP_002689064.1| PREDICTED: MAX dimerization protein 3 [Bos taurus].
          Length = 206

 Score =  211 bits (537), Expect = 9e-55
 Identities = 121/206 (58%), Positives = 122/206 (59%)
 Frame = +2

Query: 74  MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
           MEPVASNIQV                HGYASL                      LDSGRS
Sbjct: 1   MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPVHRRRKRSPQAPGALDSGRS 60

Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
           VHNELEKRRRAQLKRCLEQLKQQMPLGADC RYTTLSLLRRARMHIQKLEEQEQRAR+LK
Sbjct: 61  VHNELEKRRRAQLKRCLEQLKQQMPLGADCVRYTTLSLLRRARMHIQKLEEQEQRARQLK 120

Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
           E                      GERE                    QEELEVDVESLVF
Sbjct: 121 EKLRSKQQSLRRQLEQLRGLGTVGERERLRADSLDSSGLSSERSDSDQEELEVDVESLVF 180

Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
           GGEAELLRGFSAGQEHSYSH G  WL
Sbjct: 181 GGEAELLRGFSAGQEHSYSHSGSAWL 206


>ref|NP_001069724.1| max dimerization protein 4 [Bos taurus].
          Length = 209

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 59/148 (39%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA+L+  LEQLKQ +PLG D  R+TTLSLL+RA+MHI+KLEEQ++RA
Sbjct: 53  NNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRA 112

Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
             +KE                       E+                       E EVDVE
Sbjct: 113 LSIKEQLQREHRFLKRRL----------EQLSAQSLERVRTDSTGSAVSTDDSEQEVDVE 162

Query: 602 SLVFG-GEAELLRGFSAGQEHSYSHGGG 682
            + FG GE + +   S   +H    GGG
Sbjct: 163 GMEFGPGELDSVGSGSDVDDHYSLRGGG 190


>ref|NP_001069799.1| max-interacting protein 1 [Bos taurus].
          Length = 291

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA L+ CLE+LK  +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 130 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 189

Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
           +   E                    GP E E                    +EE+EVDVE
Sbjct: 190 QHQLE---NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 245

Query: 602 SLVFG-GEAE 628
           S  F  GE +
Sbjct: 246 STEFSHGEVD 255


>ref|NP_001179309.1| max dimerization protein 1 [Bos taurus].
          Length = 222

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 34/60 (56%), Positives = 48/60 (80%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           S RS HNE+EK RRA L+ CLE+LK  +PLG +  R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 56  SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRKA 115


>ref|XP_002691488.1| PREDICTED: MAX dimerization protein 1-like [Bos taurus].
          Length = 222

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 34/60 (56%), Positives = 48/60 (80%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           S RS HNE+EK RRA L+ CLE+LK  +PLG +  R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 56  SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRKA 115


>ref|NP_001193828.1| max-binding protein MNT [Bos taurus].
          Length = 585

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +2

Query: 248 RSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQ 415
           R VHN+LEK RRA LK C E LK+ +P   D  + + LS+LR A  +IQ L+ +E+
Sbjct: 222 REVHNKLEKNRRAHLKECFETLKRNIP-NVDDKKTSNLSVLRTALRYIQSLKRKEK 276


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,782,978
Number of extensions: 1074249
Number of successful extensions: 6907
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6827
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003663
         (1083 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_546209.2| PREDICTED: similar to MAX dimerization protein ...   211   1e-54
Alignment   gi|XP_865633.1| PREDICTED: similar to MAX dimerization protein ...   183   2e-46
Alignment   gi|XP_545921.2| PREDICTED: similar to Max dimerization protein ...    87   2e-17
Alignment   gi|XP_852395.1| PREDICTED: similar to MAX interactor 1 isoform ...    80   4e-15
Alignment   gi|XP_855458.1| PREDICTED: similar to MAX dimerization protein ...    75   1e-13
Alignment   gi|XP_854059.1| PREDICTED: similar to MAX binding protein MNT (...    52   8e-07

>ref|XP_546209.2| PREDICTED: similar to MAX dimerization protein 3 isoform 1 [Canis
           familiaris].
          Length = 206

 Score =  211 bits (537), Expect = 1e-54
 Identities = 120/206 (58%), Positives = 124/206 (60%)
 Frame = +2

Query: 74  MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
           MEPVASNIQV                HGYASL+                     LDSGRS
Sbjct: 1   MEPVASNIQVLLQAAEFLERREREAEHGYASLYPHRSPGPVYRRRKRSPQASGALDSGRS 60

Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
           VHNELEKRRRAQLKRCLEQLKQQMPLGADCAR TTLSLLR AR+HIQKLEEQEQ+ARRLK
Sbjct: 61  VHNELEKRRRAQLKRCLEQLKQQMPLGADCARSTTLSLLRWARVHIQKLEEQEQQARRLK 120

Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
           E                   AGPGERE                    QEE+EVDVESLVF
Sbjct: 121 EKLRSKQQSLQRQLEWLRGLAGPGERERPRADSLDSSGLSSERSDSDQEEVEVDVESLVF 180

Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
           GGEAELLRGFSAGQEHSYSH    WL
Sbjct: 181 GGEAELLRGFSAGQEHSYSHSSSTWL 206


>ref|XP_865633.1| PREDICTED: similar to MAX dimerization protein 3 isoform 2 [Canis
           familiaris].
          Length = 196

 Score =  183 bits (465), Expect = 2e-46
 Identities = 110/206 (53%), Positives = 114/206 (55%)
 Frame = +2

Query: 74  MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
           MEPVASNIQV                HGYASL+                     LDSGR 
Sbjct: 1   MEPVASNIQVLLQAAEFLERREREAEHGYASLYPHRSPGPVYRRRKRSPQASGALDSGR- 59

Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
                    RAQLKRCLEQLKQQMPLGADCAR TTLSLLR AR+HIQKLEEQEQ+ARRLK
Sbjct: 60  ---------RAQLKRCLEQLKQQMPLGADCARSTTLSLLRWARVHIQKLEEQEQQARRLK 110

Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
           E                   AGPGERE                    QEE+EVDVESLVF
Sbjct: 111 EKLRSKQQSLQRQLEWLRGLAGPGERERPRADSLDSSGLSSERSDSDQEEVEVDVESLVF 170

Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
           GGEAELLRGFSAGQEHSYSH    WL
Sbjct: 171 GGEAELLRGFSAGQEHSYSHSSSTWL 196


>ref|XP_545921.2| PREDICTED: similar to Max dimerization protein 4 isoform 1 [Canis
           familiaris].
          Length = 209

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 43/65 (66%), Positives = 54/65 (83%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA+L+  LEQLKQ +PLG D  R+TTLSLL+RA+MHI+KLEEQ++RA
Sbjct: 53  NNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRA 112

Query: 422 RRLKE 436
             +KE
Sbjct: 113 LSIKE 117


>ref|XP_852395.1| PREDICTED: similar to MAX interactor 1 isoform b [Canis
           familiaris].
          Length = 291

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 37/65 (56%), Positives = 49/65 (75%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA L+ CLE+LK  +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 130 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 189

Query: 422 RRLKE 436
           +   E
Sbjct: 190 QHQLE 194


>ref|XP_855458.1| PREDICTED: similar to MAX dimerization protein 1 [Canis
           familiaris].
          Length = 377

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 35/60 (58%), Positives = 48/60 (80%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           S RS HNE+EK RRA L+ CLE+LK  +PLG +  R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 56  SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 115


>ref|XP_854059.1| PREDICTED: similar to MAX binding protein MNT (ROX protein) (MYC
           antagonist MNT) [Canis familiaris].
          Length = 744

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +2

Query: 248 RSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQ 415
           R VHN+LEK RRA LK C E LK+ +P   D  + + LS+LR A  +IQ L+ +E+
Sbjct: 382 REVHNKLEKNRRAHLKECFETLKRNIP-NVDDKKTSNLSVLRTALRYIQSLKRKEK 436


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,233,390
Number of extensions: 1093384
Number of successful extensions: 7925
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7837
Number of HSP's successfully gapped: 6
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003663
         (1083 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_112590.1| max dimerization protein 3 isoform a [Homo sapi...   211   7e-55
Alignment   gi|NP_001136407.1| max dimerization protein 3 isoform b [Homo s...   144   1e-34
Alignment   gi|NP_006445.1| max dimerization protein 4 [Homo sapiens].            86   6e-17
Alignment   gi|NP_005953.4| max-interacting protein 1 isoform a [Homo sapie...    81   2e-15
Alignment   gi|NP_569157.2| max-interacting protein 1 isoform b [Homo sapie...    81   2e-15
Alignment   gi|NP_001189442.1| max dimerization protein 1 isoform 2 [Homo s...    75   1e-13
Alignment   gi|NP_002348.1| max dimerization protein 1 isoform 1 [Homo sapi...    75   1e-13
Alignment   gi|NP_001008541.1| max-interacting protein 1 isoform c [Homo sa...    65   1e-10
Alignment   gi|NP_001189443.1| max dimerization protein 1 isoform 3 [Homo s...    58   2e-08
Alignment   gi|NP_064706.1| max-binding protein MNT [Homo sapiens].               52   7e-07

>ref|NP_112590.1| max dimerization protein 3 isoform a [Homo sapiens].
          Length = 206

 Score =  211 bits (538), Expect = 7e-55
 Identities = 120/206 (58%), Positives = 124/206 (60%)
 Frame = +2

Query: 74  MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
           MEP+ASNIQV                HGYASL                       DSGRS
Sbjct: 1   MEPLASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRS 60

Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
           VHNELEKRRRAQLKRCLE+LKQQMPLGADCARYTTLSLLRRARMHIQKLE+QEQRAR+LK
Sbjct: 61  VHNELEKRRRAQLKRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLK 120

Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
           E                   AG  ERE                    QEELEVDVESLVF
Sbjct: 121 ERLRSKQQSLQRQLEQLRGLAGAAERERLRADSLDSSGLSSERSDSDQEELEVDVESLVF 180

Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
           GGEAELLRGF AGQEHSYSHGGG WL
Sbjct: 181 GGEAELLRGFVAGQEHSYSHGGGAWL 206


>ref|NP_001136407.1| max dimerization protein 3 isoform b [Homo sapiens].
          Length = 193

 Score =  144 bits (364), Expect = 1e-34
 Identities = 83/147 (56%), Positives = 87/147 (59%)
 Frame = +2

Query: 74  MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
           MEP+ASNIQV                HGYASL                       DSGRS
Sbjct: 1   MEPLASNIQVLLQAAEFLERREREAEHGYASLCPHRSPGPIHRRKKRPPQAPGAQDSGRS 60

Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
           VHNELEKRRRAQLKRCLE+LKQQMPLGADCARYTTLSLLRRARMHIQKLE+QEQRAR+LK
Sbjct: 61  VHNELEKRRRAQLKRCLERLKQQMPLGADCARYTTLSLLRRARMHIQKLEDQEQRARQLK 120

Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGERE 514
           E                   AG  ERE
Sbjct: 121 ERLRSKQQSLQRQLEQLRGLAGAAERE 147


>ref|NP_006445.1| max dimerization protein 4 [Homo sapiens].
          Length = 209

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 42/65 (64%), Positives = 54/65 (83%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA+L+  LEQLKQ +PLG D  R+TTLSLL+RA++HI+KLEEQ++RA
Sbjct: 53  NNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKVHIKKLEEQDRRA 112

Query: 422 RRLKE 436
             +KE
Sbjct: 113 LSIKE 117


>ref|NP_005953.4| max-interacting protein 1 isoform a [Homo sapiens].
          Length = 228

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA L+ CLE+LK  +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 67  ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 126

Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
           +   E                    GP E E                    +EE+EVDVE
Sbjct: 127 QHQLE---NLEREQRFLKWRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 182

Query: 602 SLVFG-GEAE 628
           S  F  GE +
Sbjct: 183 STEFSHGEVD 192


>ref|NP_569157.2| max-interacting protein 1 isoform b [Homo sapiens].
          Length = 295

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA L+ CLE+LK  +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 134 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 193

Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
           +   E                    GP E E                    +EE+EVDVE
Sbjct: 194 QHQLE---NLEREQRFLKWRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 249

Query: 602 SLVFG-GEAE 628
           S  F  GE +
Sbjct: 250 STEFSHGEVD 259


>ref|NP_001189442.1| max dimerization protein 1 isoform 2 [Homo sapiens].
          Length = 220

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 34/60 (56%), Positives = 49/60 (81%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           S RS HNE+EK RRA L+ CLE+LK  +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 56  SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 115


>ref|NP_002348.1| max dimerization protein 1 isoform 1 [Homo sapiens].
          Length = 221

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 34/60 (56%), Positives = 49/60 (81%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           S RS HNE+EK RRA L+ CLE+LK  +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 56  SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 115


>ref|NP_001008541.1| max-interacting protein 1 isoform c [Homo sapiens].
          Length = 182

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
 Frame = +2

Query: 260 NELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEX 439
           N     RRA L+ CLE+LK  +PLG DC R+TTL LL +A+ HI+KLEE E++++   E 
Sbjct: 27  NTSTANRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE- 85

Query: 440 XXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG- 616
                              GP E E                    +EE+EVDVES  F  
Sbjct: 86  --NLEREQRFLKWRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSH 142

Query: 617 GEAE 628
           GE +
Sbjct: 143 GEVD 146


>ref|NP_001189443.1| max dimerization protein 1 isoform 3 [Homo sapiens].
          Length = 211

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 26/48 (54%), Positives = 40/48 (83%)
 Frame = +2

Query: 278 RRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           RRA L+ CLE+LK  +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 58  RRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 105


>ref|NP_064706.1| max-binding protein MNT [Homo sapiens].
          Length = 582

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +2

Query: 248 RSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQ 415
           R VHN+LEK RRA LK C E LK+ +P   D  + + LS+LR A  +IQ L+ +E+
Sbjct: 222 REVHNKLEKNRRAHLKECFETLKRNIP-NVDDKKTSNLSVLRTALRYIQSLKRKEK 276


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,239,082
Number of extensions: 1046880
Number of successful extensions: 6832
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6772
Number of HSP's successfully gapped: 10
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003663
         (1083 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057871.2| max dimerization protein 3 [Mus musculus].           189   2e-48
Alignment   gi|NP_034883.2| max dimerization protein 4 [Mus musculus].            87   2e-17
Alignment   gi|NP_001008543.1| max-interacting protein 1 isoform c [Mus mus...    82   6e-16
Alignment   gi|NP_034977.1| max-interacting protein 1 isoform a [Mus muscul...    82   6e-16
Alignment   gi|NP_001008542.2| max-interacting protein 1 isoform b [Mus mus...    82   6e-16
Alignment   gi|NP_034881.2| max dimerization protein 1 [Mus musculus].            75   1e-13
Alignment   gi|NP_034943.3| max-binding protein MNT [Mus musculus].               52   6e-07

>ref|NP_057871.2| max dimerization protein 3 [Mus musculus].
          Length = 206

 Score =  189 bits (481), Expect = 2e-48
 Identities = 110/206 (53%), Positives = 117/206 (56%)
 Frame = +2

Query: 74  MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
           MEPVASNIQV                HGYASL                      L+SGRS
Sbjct: 1   MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHHSPGTVCRRRKPPLQAPGALNSGRS 60

Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
           VHNELEKRRRAQLKRCLEQL+QQMPLG DC RYTTLSLLRRAR+HIQKLEEQEQ+ARRLK
Sbjct: 61  VHNELEKRRRAQLKRCLEQLRQQMPLGVDCTRYTTLSLLRRARVHIQKLEEQEQQARRLK 120

Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
           E                    G  ERE                    QE+LEVDVESLVF
Sbjct: 121 EKLRSKQQSLQQQLEQLQGLPGARERERLRADSLDSSGLSSERSDSDQEDLEVDVESLVF 180

Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
           G E ELL+ FSAG+EHSYSH    WL
Sbjct: 181 GTETELLQSFSAGREHSYSHSTCAWL 206


>ref|NP_034883.2| max dimerization protein 4 [Mus musculus].
          Length = 209

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 43/65 (66%), Positives = 54/65 (83%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA+L+  LEQLKQ +PLG D  R+TTLSLL+RA+MHI+KLEEQ++RA
Sbjct: 53  NNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRA 112

Query: 422 RRLKE 436
             +KE
Sbjct: 113 LSIKE 117


>ref|NP_001008543.1| max-interacting protein 1 isoform c [Mus musculus].
          Length = 192

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA L+ CLE+LK  +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 31  ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 90

Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
           +   E                    GP E E                    +EE+EVDVE
Sbjct: 91  QHQLE---NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 146

Query: 602 SLVFG-GEAE 628
           S  F  GEA+
Sbjct: 147 STEFSHGEAD 156


>ref|NP_034977.1| max-interacting protein 1 isoform a [Mus musculus].
          Length = 228

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA L+ CLE+LK  +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 67  ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 126

Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
           +   E                    GP E E                    +EE+EVDVE
Sbjct: 127 QHQLE---NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 182

Query: 602 SLVFG-GEAE 628
           S  F  GEA+
Sbjct: 183 STEFSHGEAD 192


>ref|NP_001008542.2| max-interacting protein 1 isoform b [Mus musculus].
          Length = 295

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           + RS HNELEK RRA L+ CLE+LK  +PLG DC R+TTL LL +A+ HI+KLEE E+++
Sbjct: 134 ANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKS 193

Query: 422 RRLKEXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVE 601
           +   E                    GP E E                    +EE+EVDVE
Sbjct: 194 QHQLE---NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVE 249

Query: 602 SLVFG-GEAE 628
           S  F  GEA+
Sbjct: 250 STEFSHGEAD 259


>ref|NP_034881.2| max dimerization protein 1 [Mus musculus].
          Length = 227

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 34/60 (56%), Positives = 49/60 (81%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           S RS HNE+EK RRA L+ CLE+LK  +PLG + +R+TTLSLL +A++HI+KLE+ +++A
Sbjct: 55  SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKA 114


>ref|NP_034943.3| max-binding protein MNT [Mus musculus].
          Length = 591

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +2

Query: 248 RSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQ 415
           R VHN+LEK RRA LK C E LK+ +P   D  + + LS+LR A  +IQ L+ +E+
Sbjct: 224 REVHNKLEKNRRAHLKECFETLKRNIP-NVDDKKTSNLSVLRTALRYIQSLKRKEK 278


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,803,608
Number of extensions: 851570
Number of successful extensions: 5297
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5223
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003663
         (1083 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003123727.1| PREDICTED: max dimerization protein 3-like [...   231   4e-61
Alignment   gi|XP_003354830.1| PREDICTED: max dimerization protein 1-like i...    75   8e-14
Alignment   gi|XP_001925312.2| PREDICTED: hypothetical protein LOC100154269...    66   4e-11
Alignment   gi|XP_003133229.2| PREDICTED: hypothetical protein LOC100154269...    65   9e-11
Alignment   gi|XP_003354831.1| PREDICTED: max dimerization protein 1-like i...    58   1e-08
Alignment   gi|XP_003125113.2| PREDICTED: max dimerization protein 1-like [...    56   4e-08

>ref|XP_003123727.1| PREDICTED: max dimerization protein 3-like [Sus scrofa].
          Length = 206

 Score =  231 bits (590), Expect = 4e-61
 Identities = 130/206 (63%), Positives = 130/206 (63%)
 Frame = +2

Query: 74  MEPVASNIQVXXXXXXXXXXXXXXXXHGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRS 253
           MEPVASNIQV                HGYASLF                     LDSGRS
Sbjct: 1   MEPVASNIQVLLQAAEFLERREREAEHGYASLFPHRSPGPVHRRRRRSPQDPGALDSGRS 60

Query: 254 VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 433
           VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK
Sbjct: 61  VHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLK 120

Query: 434 EXXXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVF 613
           E                   AGPGERE                    QEELEVDVESLVF
Sbjct: 121 EKLRSKQQSLRQQLEQLRGLAGPGERERLRADSLDSSGLSSERSDSDQEELEVDVESLVF 180

Query: 614 GGEAELLRGFSAGQEHSYSHGGGVWL 691
           GGEAELLRGFSAGQEHSYSHGGGVWL
Sbjct: 181 GGEAELLRGFSAGQEHSYSHGGGVWL 206


>ref|XP_003354830.1| PREDICTED: max dimerization protein 1-like isoform 1 [Sus scrofa].
          Length = 221

 Score = 74.7 bits (182), Expect = 8e-14
 Identities = 35/60 (58%), Positives = 48/60 (80%)
 Frame = +2

Query: 242 SGRSVHNELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           S RS HNE+EK RRA L+ CLE+LK  +PLG +  R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 56  SSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 115


>ref|XP_001925312.2| PREDICTED: hypothetical protein LOC100154269 isoform 1 [Sus
           scrofa].
          Length = 281

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 53/160 (33%), Positives = 67/160 (41%), Gaps = 1/160 (0%)
 Frame = +2

Query: 152 HGYASLFXXXXXXXXXXXXXXXXXXXXXLDSGRSVHNELEKRRRAQLKRCLEQLKQQMPL 331
           HGYAS F                       S  S  N     RRA L+ CLE+LK  +PL
Sbjct: 91  HGYASTFPSMPSPRMQHSKPPRRLSRAQKHSSGS-SNTSTANRRAHLRLCLERLKVLIPL 149

Query: 332 GADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEXXXXXXXXXXXXXXXXXXXAGPGER 511
           G DC R+TTL LL +A+ HI+KLEE E++++   E                    GP E 
Sbjct: 150 GPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE---NLEREQRFLKRRLEQLQGPQEM 206

Query: 512 EXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG-GEAE 628
           E                    +EE+EVDVES  F  GE +
Sbjct: 207 E-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSHGEVD 245


>ref|XP_003133229.2| PREDICTED: hypothetical protein LOC100154269 isoform 2 [Sus
           scrofa].
          Length = 182

 Score = 64.7 bits (156), Expect = 9e-11
 Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
 Frame = +2

Query: 260 NELEKRRRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRARRLKEX 439
           N     RRA L+ CLE+LK  +PLG DC R+TTL LL +A+ HI+KLEE E++++   E 
Sbjct: 27  NTSTANRRAHLRLCLERLKVLIPLGPDCTRHTTLGLLNKAKAHIKKLEEAERKSQHQLE- 85

Query: 440 XXXXXXXXXXXXXXXXXXAGPGEREXXXXXXXXXXXXXXXXXXXXQEELEVDVESLVFG- 616
                              GP E E                    +EE+EVDVES  F  
Sbjct: 86  --NLEREQRFLKRRLEQLQGPQEME-RIRMDSIGSTISSDRSDSEREEIEVDVESTEFSH 142

Query: 617 GEAE 628
           GE +
Sbjct: 143 GEVD 146


>ref|XP_003354831.1| PREDICTED: max dimerization protein 1-like isoform 2 [Sus scrofa].
          Length = 211

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 27/48 (56%), Positives = 39/48 (81%)
 Frame = +2

Query: 278 RRAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           RRA L+ CLE+LK  +PLG +  R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 58  RRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 105


>ref|XP_003125113.2| PREDICTED: max dimerization protein 1-like [Sus scrofa].
          Length = 200

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 26/47 (55%), Positives = 38/47 (80%)
 Frame = +2

Query: 281 RAQLKRCLEQLKQQMPLGADCARYTTLSLLRRARMHIQKLEEQEQRA 421
           RA L+ CLE+LK  +PLG +  R+TTLSLL +A++HI+KLE+ ++RA
Sbjct: 48  RAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRA 94


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,299,634
Number of extensions: 724046
Number of successful extensions: 4702
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4651
Number of HSP's successfully gapped: 6
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003663
         (1083 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         900   0.0  

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  900 bits (454), Expect = 0.0
 Identities = 478/485 (98%), Gaps = 2/485 (0%)
 Strand = Plus / Minus

                                                                            
Query: 577      agaggagctggaggtggatgtggagagcctggtgttcgggggcgaggctgagctgctacg 636
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227986 agaggagctggaggtggatgtggagagcctggtgttcgggggcgaggctgagctgctacg 82227927

                                                                            
Query: 637      gggcttcagcgccggccaggagcacagctattcacacggtggtggcgtctggctatgacc 696
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227926 gggcttcagcgccggccaggagcacagctattcacacggtggtggcgtctggctatgacc 82227867

                                                                            
Query: 697      ttcgttgccggaggggcctctatgctcagaccacccttggctctgcccaactggagtcct 756
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227866 ttcgttgccggaggggcctctatgctcagaccacccttggctctgcccaactggagtcct 82227807

                                                                            
Query: 757      cgccgagcctccagggctgctgagagtcgcctcctgttggaatggactaaatggaccttg 816
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227806 cgccgagcctccagggctgctgagagtcgcctcctgttggaatggactaaatggaccttg 82227747

                                                                            
Query: 817      tgtggaaacaggtgctccccctaccctgctgctggctgccggcagcccctcctaggacag 876
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227746 tgtggaaacaggtgctccccctaccctgctgctggctgccggcagcccctcctaggacag 82227687

                                                                            
Query: 877      agagccctgcggggcaggtggcttgggcccaggctgcccttccaggcatttttagtagca 936
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227686 agagccctgcggggcaggtggcttgggcccaggctgcccttccaggcatttttagtagca 82227627

                                                                            
Query: 937      cttggctctgctgtccatgggggcagggagccttttgggccctcacgttccttcctagac 996
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82227626 cttggctctgctgtccatgggggcagggagccttttgggccctcacgttccttcctagac 82227567

                                                                            
Query: 997      agggccccgccctgggc--ttgccccacatgtactgttcaatgttttcattaaaagcccc 1054
                | || |||||||  |||  ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 82227566 aagggcccgcccctggcctttgccccacatgtactgttcagtgttttcattaaaagcccc 82227507

                     
Query: 1055     tttct 1059
                |||||
Sbjct: 82227506 tttct 82227502



 Score =  371 bits (187), Expect = e-100
 Identities = 187/187 (100%)
 Strand = Plus / Minus

                                                                            
Query: 392      cagaaactggaggagcaggagcagcgggcccggcggctcaaggagaagcttcgaagtaag 451
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82228246 cagaaactggaggagcaggagcagcgggcccggcggctcaaggagaagcttcgaagtaag 82228187

                                                                            
Query: 452      cagcagagcctgcggcagcagctggagcagctcagggggcttgcggggcctggtgagcgt 511
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82228186 cagcagagcctgcggcagcagctggagcagctcagggggcttgcggggcctggtgagcgt 82228127

                                                                            
Query: 512      gagcggctgcgggcagacagcctggactcctcaggcctctcctccgagcgttctgactca 571
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82228126 gagcggctgcgggcagacagcctggactcctcaggcctctcctccgagcgttctgactca 82228067

                       
Query: 572      gaccaag 578
                |||||||
Sbjct: 82228066 gaccaag 82228060



 Score =  283 bits (143), Expect = 1e-73
 Identities = 143/143 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        cattgtaacaaaagtggtgcagccgctcctccggccagcaccgtaggccagcccgccgcc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231523 cattgtaacaaaagtggtgcagccgctcctccggccagcaccgtaggccagcccgccgcc 82231464

                                                                            
Query: 61       agctgtcgcggacatggaacccgtggccagcaatatccaagttctgctgcaggcggccga 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231463 agctgtcgcggacatggaacccgtggccagcaatatccaagttctgctgcaggcggccga 82231404

                                       
Query: 121      gttcctggagcgccgcgagagag 143
                |||||||||||||||||||||||
Sbjct: 82231403 gttcctggagcgccgcgagagag 82231381



 Score =  238 bits (120), Expect = 5e-60
 Identities = 120/120 (100%)
 Strand = Plus / Minus

                                                                            
Query: 275      cgcaggagggcccagctgaagcggtgcctggagcagctgaagcagcagatgcccctgggg 334
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82230187 cgcaggagggcccagctgaagcggtgcctggagcagctgaagcagcagatgcccctgggg 82230128

                                                                            
Query: 335      gctgactgtgcccgatacaccacactgagccttctgcgcagggccaggatgcacatccag 394
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82230127 gctgactgtgcccgatacaccacactgagccttctgcgcagggccaggatgcacatccag 82230068



 Score =  210 bits (106), Expect = 1e-51
 Identities = 109/110 (99%)
 Strand = Plus / Minus

                                                                            
Query: 142      agaggcggagcatggctatgcgtccctgtttccgcaccgaagtcctggcccggtccacag 201
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82231117 agaggcggagcatggctatgcgtccctgtttccgcaccgaagtcctggcccggtccacag 82231058

                                                                  
Query: 202      gaggaggcggcggtccccccaagctcctggcgcgctggacagtgggcggt 251
                ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 82231057 gaggaggcggcggtccccccaagatcctggcgcgctggacagtgggcggt 82231008



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 249      ggtctgtgcataacgagttggaaaagcgcagg 280
                ||||||||||||||||||||||||||||||||
Sbjct: 82230343 ggtctgtgcataacgagttggaaaagcgcagg 82230312


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,881,834
Number of extensions: 206
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 6
Length of query: 1083
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1062
Effective length of database: 2,808,413,156
Effective search space: 2982534771672
Effective search space used: 2982534771672
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)