Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003664
(902 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077207.1| gap junction alpha-4 protein [Bos taurus]. 494 e-140
Alignment gi|NP_001159768.1| gap junction alpha-3 protein [Bos taurus]. 279 2e-75
Alignment gi|NP_776493.1| gap junction alpha-1 protein [Bos taurus]. 279 3e-75
Alignment gi|XP_002686131.1| PREDICTED: gap junction protein, alpha 8, 50... 261 6e-70
Alignment gi|XP_602360.2| PREDICTED: gap junction protein, alpha 8, 50kDa... 261 6e-70
Alignment gi|NP_001071490.1| gap junction alpha-5 protein [Bos taurus]. 253 2e-67
Alignment gi|XP_002690236.1| PREDICTED: gap junction protein, alpha 10, 6... 243 2e-64
Alignment gi|XP_001787483.1| PREDICTED: gap junction protein, alpha 10 [B... 242 3e-64
Alignment gi|NP_001039541.1| gap junction gamma-1 protein [Bos taurus]. 204 7e-53
Alignment gi|NP_001077106.1| gap junction beta-2 protein [Bos taurus]. 202 2e-52
>ref|NP_001077207.1| gap junction alpha-4 protein [Bos taurus].
Length = 333
Score = 494 bits (1272), Expect = e-140
Identities = 243/267 (91%), Positives = 246/267 (92%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG
Sbjct: 1 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD
Sbjct: 61 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 120
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
PRVERALA+IERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT
Sbjct: 121 PRVERALASIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 180
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRGI 819
MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS SRG+
Sbjct: 181 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISLVLNLLELAYLLCRCLSRGV 240
Query: 820 RARREPDTPPAQGTSSEPYADQVFLYL 900
RAR+ D PPA GTSSEPYADQVF YL
Sbjct: 241 RARQRQDAPPAPGTSSEPYADQVFFYL 267
>ref|NP_001159768.1| gap junction alpha-3 protein [Bos taurus].
Length = 407
Score = 279 bits (714), Expect = 2e-75
Identities = 137/259 (52%), Positives = 177/259 (68%), Gaps = 1/259 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +LL+ QEHSTV+GK+WLTVLFIFRIL+LG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEEVWGDEQSDFTCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISH+R+WVLQ +FVSTPTL+YLGHV++L R EE+ +++E E P K
Sbjct: 61 CENVCYDRAFPISHVRFWVLQIIFVSTPTLIYLGHVLHLVRMEEKRKEREEE----PPK- 115
Query: 460 PRVERALAAIERQMAKISVAED-GHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGW 636
A E V +D G +RI GAL+ TYV +++ K++ E GF+ GQ+ LYG+
Sbjct: 116 ------AAGPEGHQDPAPVRDDRGKVRIAGALLRTYVFNIIFKTLFEVGFIAGQYFLYGF 169
Query: 637 TMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRG 816
++P++ C R PCP VDCF+SRPTEKTIFI+FML V +S +G
Sbjct: 170 QLKPLYRCDRWPCPNTVDCFISRPTEKTIFILFMLAVACVSLLLNVLEIYHLGWKKLKQG 229
Query: 817 IRARREPDTPPAQGTSSEP 873
+ + PDTP ++ S +P
Sbjct: 230 MTSPFRPDTPGSRAGSVKP 248
>ref|NP_776493.1| gap junction alpha-1 protein [Bos taurus].
Length = 383
Score = 279 bits (713), Expect = 3e-75
Identities = 131/221 (59%), Positives = 166/221 (75%), Gaps = 1/221 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L KLLD+VQ +ST GK+WL+VLFIFRIL+LG A ES WGDEQS F CNT QPG
Sbjct: 1 MGDWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD++FPISH+R+WVLQ +FVS PTL+YL HV Y+ R+EE+L +KE EL+ + D
Sbjct: 61 CENVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVVAQTD 120
Query: 460 -PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGW 636
V+ L IE + K + E G +++RG L+ TY+ S+L KSV E FL QW +YG+
Sbjct: 121 GANVDMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSVFEVAFLLIQWYIYGF 180
Query: 637 TMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
++ V+ C+R PCP+ VDCF+SRPTEKTIFIIFMLVV L+S
Sbjct: 181 SLSAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSLVS 221
>ref|XP_002686131.1| PREDICTED: gap junction protein, alpha 8, 50kDa-like [Bos taurus].
Length = 440
Score = 261 bits (667), Expect = 6e-70
Identities = 126/223 (56%), Positives = 163/223 (73%), Gaps = 3/223 (1%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+LVY+GH ++ R EE+ +++E E + +
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEKRKEREAEELSQQSPG 120
Query: 460 PRVERA-LAAIERQMAKISVAEDG--HLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY 630
ERA LAA + + K S + G R+ G L+ TY+ ++ K++ E GF+ G + LY
Sbjct: 121 NGGERAPLAADQGSVKKSSSSSKGTKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLY 180
Query: 631 GWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
G+ + P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 181 GFRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVS 223
>ref|XP_602360.2| PREDICTED: gap junction protein, alpha 8, 50kDa-like isoform 1 [Bos
taurus].
Length = 440
Score = 261 bits (667), Expect = 6e-70
Identities = 126/223 (56%), Positives = 163/223 (73%), Gaps = 3/223 (1%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+LVY+GH ++ R EE+ +++E E + +
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEKRKEREAEELSQQSPG 120
Query: 460 PRVERA-LAAIERQMAKISVAEDG--HLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY 630
ERA LAA + + K S + G R+ G L+ TY+ ++ K++ E GF+ G + LY
Sbjct: 121 NGGERAPLAADQGSVKKSSSSSKGTKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLY 180
Query: 631 GWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
G+ + P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 181 GFRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVS 223
>ref|NP_001071490.1| gap junction alpha-5 protein [Bos taurus].
Length = 359
Score = 253 bits (645), Expect = 2e-67
Identities = 120/223 (53%), Positives = 165/223 (73%), Gaps = 3/223 (1%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL + L++V +HSTV+GK+WLTVLFIFR+L+LG A ES WGDEQ+DF C+T QPG
Sbjct: 1 MGDWSFLGEFLEEVHKHSTVIGKVWLTVLFIFRMLVLGTAAESSWGDEQADFLCDTMQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSR-REERLRQKEGELRALPAK 456
C NVCYDQAFPISHIRYWVLQ +FVSTP+LVYLGH +++ R +E+R +E E AK
Sbjct: 61 CENVCYDQAFPISHIRYWVLQVIFVSTPSLVYLGHAVHMVRVQEKRKLLREAE----RAK 116
Query: 457 DPRVERALAAIERQMAKISVAED--GHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY 630
+ R + + ++S E+ G + ++G+L+ TYV S+L ++ +E F+ GQ+ LY
Sbjct: 117 EARAAGSYEYPVAEKTELSCWEEVNGRIALQGSLLNTYVCSILIRTTMEVAFIVGQYLLY 176
Query: 631 GWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
G ++ + VC+RSPCP+ V+C+VSRPTEK +FI+FML V +S
Sbjct: 177 GVFLDTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAGLS 219
>ref|XP_002690236.1| PREDICTED: gap junction protein, alpha 10, 62kDa [Bos taurus].
Length = 559
Score = 243 bits (619), Expect = 2e-64
Identities = 125/228 (54%), Positives = 157/228 (68%), Gaps = 8/228 (3%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L +L+ V HST+VGKIWLT+LFIFR+LILG+A E VW DEQS F CNT QPG
Sbjct: 1 MGDWNLLGGILEDVHSHSTMVGKIWLTILFIFRMLILGVAAEDVWDDEQSAFACNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQ-KEGELRA---- 444
C VCYD AFPIS IR+WVLQ +FVS+P+LVY+GH +Y R E+ RQ K+ +LRA
Sbjct: 61 CNTVCYDTAFPISLIRFWVLQIIFVSSPSLVYMGHALYRLRAFEKERQRKKSQLRAQMEN 120
Query: 445 --LPAKD-PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYG 615
L +D R++R L +E Q V ++G L+ TYV VL +SVLE GF+ G
Sbjct: 121 PELELEDQQRMDRELRKLEEQKRVQKVP------LKGCLLRTYVLHVLTRSVLEVGFMVG 174
Query: 616 QWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
Q+ LYG+ M P++ C + PCP VDCFVSRPTEKTIF++FM + IS
Sbjct: 175 QYILYGFQMHPLYKCTQPPCPNAVDCFVSRPTEKTIFMLFMHSIAAIS 222
>ref|XP_001787483.1| PREDICTED: gap junction protein, alpha 10 [Bos taurus].
Length = 559
Score = 242 bits (618), Expect = 3e-64
Identities = 125/228 (54%), Positives = 157/228 (68%), Gaps = 8/228 (3%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L +L+ V HST+VGKIWLT+LFIFR+LILG+A E VW DEQS F CNT QPG
Sbjct: 1 MGDWNLLGGILEDVHSHSTMVGKIWLTILFIFRMLILGVAAEDVWDDEQSAFACNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQ-KEGELRA---- 444
C VCYD AFPIS IR+WVLQ +FVS+P+LVY+GH +Y R E+ RQ K+ +LRA
Sbjct: 61 CNTVCYDTAFPISLIRFWVLQIIFVSSPSLVYMGHALYRLRAFEKERQRKKSQLRAQMEN 120
Query: 445 --LPAKD-PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYG 615
L +D R++R L +E Q V ++G L+ TYV VL +SVLE GF+ G
Sbjct: 121 PELELEDQQRMDRELRKLEEQKRIQKVP------LKGCLLRTYVLHVLTRSVLEVGFMVG 174
Query: 616 QWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
Q+ LYG+ M P++ C + PCP VDCFVSRPTEKTIF++FM + IS
Sbjct: 175 QYILYGFQMHPLYKCTQPPCPNAVDCFVSRPTEKTIFMLFMHSIAAIS 222
>ref|NP_001039541.1| gap junction gamma-1 protein [Bos taurus].
Length = 396
Score = 204 bits (520), Expect = 7e-53
Identities = 103/239 (43%), Positives = 141/239 (58%), Gaps = 24/239 (10%)
Frame = +1
Query: 109 WGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCTN 288
W FL +LL+++ HST VGKIWLTVL +FRI++ + GES++ DEQS F CNT QPGC N
Sbjct: 3 WSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCEN 62
Query: 289 VCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREER------------------ 414
VCYD P+SH+R+WV Q + V+TP+++YLG+ I+ + E
Sbjct: 63 VCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGDADKKAARSKPYAMRWK 122
Query: 415 ----LRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIR-GALMGTYVASVL 579
L + E + P P +E + + DG RIR LM YV +L
Sbjct: 123 QHRALEETEEDHEEDPMMYPEMELESEKENKDQNQSKPKHDGRRRIREDGLMKIYVLQLL 182
Query: 580 CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFML-VVGL 753
++V E GFL GQ+ LYG+ + P +VC R PCP+ +DCF+SRPTEKTIF++ M V GL
Sbjct: 183 ARTVFEVGFLVGQYFLYGFQVHPFYVCSRLPCPHKIDCFISRPTEKTIFLLIMYGVTGL 241
>ref|NP_001077106.1| gap junction beta-2 protein [Bos taurus].
Length = 226
Score = 202 bits (515), Expect = 2e-52
Identities = 104/215 (48%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Frame = +1
Query: 106 DWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCT 285
DWG L +L V +HST +GKIWLTVLFIFRI+IL +A + VWGDEQ+DF CNT QPGC
Sbjct: 2 DWGGLHTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGCK 61
Query: 286 NVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKDPR 465
NVCYD FPISHIR W LQ +FVSTP L+ HV Y R E++ + GE
Sbjct: 62 NVCYDHYFPISHIRLWALQLIFVSTPALLVAMHVAYY-RHEKKRKFIRGE---------- 110
Query: 466 VERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY-GWTM 642
I+ + I + +RI G+L TY S+ + + EA F+Y + +Y G+ M
Sbjct: 111 -------IKTEFKDIEEIKKQKVRIEGSLWWTYTGSIFFRVIFEAAFMYVFYVMYDGFAM 163
Query: 643 EPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVV 747
+ + C PCP VDCFVSRPTEKT+F +FM+ V
Sbjct: 164 QRLVKCNAWPCPNTVDCFVSRPTEKTVFTVFMIAV 198
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,959,239
Number of extensions: 862883
Number of successful extensions: 3903
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3867
Number of HSP's successfully gapped: 31
Length of query: 300
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,306,398
Effective search space: 2832666804
Effective search space used: 2832666804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003664
(902 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539602.1| PREDICTED: similar to connexin 37 [Canis famili... 485 e-137
Alignment gi|NP_001002951.2| gap junction alpha-1 protein [Canis lupus fa... 280 1e-75
Alignment gi|XP_543178.2| PREDICTED: similar to Gap junction alpha-3 prot... 275 6e-74
Alignment gi|NP_001017442.2| gap junction alpha-5 protein [Canis lupus fa... 257 1e-68
Alignment gi|XP_540274.1| PREDICTED: similar to gap junction membrane cha... 255 3e-68
Alignment gi|XP_859044.1| PREDICTED: similar to Gap junction alpha-8 prot... 255 3e-68
Alignment gi|XP_859009.1| PREDICTED: similar to gap junction membrane cha... 251 9e-67
Alignment gi|XP_858969.1| PREDICTED: similar to gap junction membrane cha... 249 2e-66
Alignment gi|XP_858926.1| PREDICTED: similar to gap junction membrane cha... 248 6e-66
Alignment gi|XP_858893.1| PREDICTED: similar to gap junction membrane cha... 237 1e-62
>ref|XP_539602.1| PREDICTED: similar to connexin 37 [Canis familiaris].
Length = 333
Score = 485 bits (1248), Expect = e-137
Identities = 238/267 (89%), Positives = 244/267 (91%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG
Sbjct: 1 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD
Sbjct: 61 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 120
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
PRVERALAA+ERQMAKISVAEDG LRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT
Sbjct: 121 PRVERALAAVERQMAKISVAEDGRLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 180
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRGI 819
MEPVFVCQR+PCPYLVDCFVSRPTEKTIFIIFMLVVGLIS SRG+
Sbjct: 181 MEPVFVCQRAPCPYLVDCFVSRPTEKTIFIIFMLVVGLISLVLNLLELAHLLCRCLSRGM 240
Query: 820 RARREPDTPPAQGTSSEPYADQVFLYL 900
+A+R D PP +G SSEPYADQVF YL
Sbjct: 241 KAQRGQDAPPPRGASSEPYADQVFFYL 267
>ref|NP_001002951.2| gap junction alpha-1 protein [Canis lupus familiaris].
Length = 382
Score = 280 bits (717), Expect = 1e-75
Identities = 130/220 (59%), Positives = 164/220 (74%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L KLLD+VQ +ST GK+WL+VLFIFRIL+LG A ES WGDEQS F CNT QPG
Sbjct: 1 MGDWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD++FPISH+R+WVLQ +FVS PTL+YL HV Y+ R+EE+L +KE EL+
Sbjct: 61 CENVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDG 120
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
V+ L IE + K + E G +++RG L+ TY+ S+L KSV E FL QW +YG++
Sbjct: 121 ANVDMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSVFEVAFLLIQWYIYGFS 180
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ V+ C+R PCP+ VDCF+SRPTEKTIFIIFMLVV L+S
Sbjct: 181 LSAVYTCKREPCPHQVDCFLSRPTEKTIFIIFMLVVSLVS 220
>ref|XP_543178.2| PREDICTED: similar to Gap junction alpha-3 protein (Connexin 46)
(Cx46) [Canis familiaris].
Length = 447
Score = 275 bits (702), Expect = 6e-74
Identities = 135/252 (53%), Positives = 173/252 (68%), Gaps = 1/252 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +LL+ QEHSTV+GK+WLTVLFIFRIL+LG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEEVWGDEQSDFTCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR+WVLQ +FVSTPTL+YLGHV+++ R EE+ +++E EL L A+
Sbjct: 61 CENVCYDRAFPISHIRFWVLQIIFVSTPTLIYLGHVLHIVRMEEKKKEREEEL--LRAEL 118
Query: 460 PRVERALAAIERQMAKISVAED-GHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGW 636
P A + +D G +RI GAL+ TYV +++ K++ E GF+ GQ+ LYG+
Sbjct: 119 PHPGPAARCGPGGQKDRPLRDDRGRVRIAGALLRTYVFNIIFKTLFEVGFIAGQYFLYGF 178
Query: 637 TMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRG 816
++P++ C R PCP VDCF+SRPTEKTIFIIFML V +S +G
Sbjct: 179 ELKPLYRCDRWPCPNTVDCFISRPTEKTIFIIFMLAVACVSLLLNMLEIYHLGWKKLKQG 238
Query: 817 IRARREPDTPPA 852
+ D+P A
Sbjct: 239 MTNHPRADSPEA 250
>ref|NP_001017442.2| gap junction alpha-5 protein [Canis lupus familiaris].
Length = 358
Score = 257 bits (656), Expect = 1e-68
Identities = 119/222 (53%), Positives = 165/222 (74%), Gaps = 2/222 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL + L++V +HSTV+GK+WLTVLFIFR+L+LG A ES WGDEQ+DF+C+T QPG
Sbjct: 1 MGDWSFLGEFLEEVHKHSTVIGKVWLTVLFIFRMLVLGTAAESSWGDEQADFQCDTMQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYDQAFPISHIRYWVLQ +FVSTP+LVY+GH ++ R +E+ + +E E AK+
Sbjct: 61 CGNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAE----RAKE 116
Query: 460 PRVERALAAIERQMAKISVAED--GHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
R + + A++S E+ G + ++G L+ TYV S+L ++ +E F+ GQ+ LYG
Sbjct: 117 ARGAGSYEYPVAEKAELSCWEEVNGRIVLQGTLLNTYVCSILIRTTMEVAFIVGQYLLYG 176
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
++ + VC+RSPCP+ V+C+VSRPTEK +FI+FML V +S
Sbjct: 177 IFLDTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALS 218
>ref|XP_540274.1| PREDICTED: similar to gap junction membrane channel protein alpha 8
isoform 1 [Canis familiaris].
Length = 439
Score = 255 bits (652), Expect = 3e-68
Identities = 123/223 (55%), Positives = 159/223 (71%), Gaps = 3/223 (1%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+LVY+GH ++ R EE+ +++E E A
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEKRKEREAEELCQQAAG 120
Query: 460 PRVERA-LAAIERQMAKISVAEDG--HLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY 630
+R LA + + K + G R+ G L+ TY+ ++ K++ E GF+ G + LY
Sbjct: 121 DGGDRVPLATDQGSIKKGGNSSKGAKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLY 180
Query: 631 GWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
G+ + P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 181 GFRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVS 223
>ref|XP_859044.1| PREDICTED: similar to Gap junction alpha-8 protein (Connexin 50)
(Cx50) (Lens fiber protein MP70) isoform 7 [Canis
familiaris].
Length = 414
Score = 255 bits (652), Expect = 3e-68
Identities = 123/223 (55%), Positives = 159/223 (71%), Gaps = 3/223 (1%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+LVY+GH ++ R EE+ +++E E A
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEKRKEREAEELCQQAAG 120
Query: 460 PRVERA-LAAIERQMAKISVAEDG--HLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY 630
+R LA + + K + G R+ G L+ TY+ ++ K++ E GF+ G + LY
Sbjct: 121 DGGDRVPLATDQGSIKKGGNSSKGAKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLY 180
Query: 631 GWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
G+ + P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 181 GFRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVS 223
>ref|XP_859009.1| PREDICTED: similar to gap junction membrane channel protein alpha 8
isoform 6 [Canis familiaris].
Length = 418
Score = 251 bits (640), Expect = 9e-67
Identities = 119/220 (54%), Positives = 151/220 (68%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+LVY+GH ++ R EE+ +++E E
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEKRKEREAE-------- 112
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
E D R+ G L+ TY+ ++ K++ E GF+ G + LYG+
Sbjct: 113 ----------ELCQQAAGDGGDRKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLYGFR 162
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 163 ILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVS 202
>ref|XP_858969.1| PREDICTED: similar to gap junction membrane channel protein alpha 8
isoform 5 [Canis familiaris].
Length = 411
Score = 249 bits (636), Expect = 2e-66
Identities = 120/220 (54%), Positives = 153/220 (69%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+LVY+GH ++ R EE+ +++E E
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEKRKEREAE-------- 112
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
E + AK R+ G L+ TY+ ++ K++ E GF+ G + LYG+
Sbjct: 113 ----------ELKGAK-------KFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLYGFR 155
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 156 ILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVS 195
>ref|XP_858926.1| PREDICTED: similar to gap junction membrane channel protein alpha 8
isoform 4 [Canis familiaris].
Length = 419
Score = 248 bits (633), Expect = 6e-66
Identities = 119/220 (54%), Positives = 152/220 (69%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+LVY+GH ++ R EE+ +++E E L K
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEKRKEREAE--ELIKKG 118
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
+ R+ G L+ TY+ ++ K++ E GF+ G + LYG+
Sbjct: 119 GNSSKGAK---------------KFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLYGFR 163
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 164 ILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVS 203
>ref|XP_858893.1| PREDICTED: similar to gap junction membrane channel protein alpha 8
isoform 3 [Canis familiaris].
Length = 418
Score = 237 bits (604), Expect = 1e-62
Identities = 118/222 (53%), Positives = 147/222 (66%), Gaps = 2/222 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+LVY+GH A D
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHA--------------------AAGD 100
Query: 460 PRVERALAAIERQMAKISVAEDG--HLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
LA + + K + G R+ G L+ TY+ ++ K++ E GF+ G + LYG
Sbjct: 101 GGDRVPLATDQGSIKKGGNSSKGAKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLYG 160
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ + P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 161 FRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVS 202
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,252,519
Number of extensions: 889449
Number of successful extensions: 3907
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 3878
Number of HSP's successfully gapped: 25
Length of query: 300
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 198
Effective length of database: 15,474,232
Effective search space: 3063897936
Effective search space used: 3063897936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003664
(902 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002051.2| gap junction alpha-4 protein [Homo sapiens]. 486 e-137
Alignment gi|NP_000156.1| gap junction alpha-1 protein [Homo sapiens]. 280 2e-75
Alignment gi|NP_068773.2| gap junction alpha-3 protein [Homo sapiens]. 273 1e-73
Alignment gi|NP_005257.2| gap junction alpha-5 protein [Homo sapiens]. 258 4e-69
Alignment gi|NP_859054.1| gap junction alpha-5 protein [Homo sapiens]. 258 4e-69
Alignment gi|NP_005258.2| gap junction alpha-8 protein [Homo sapiens]. 249 2e-66
Alignment gi|NP_110399.2| gap junction alpha-9 protein [Homo sapiens]. 246 2e-65
Alignment gi|NP_115991.1| gap junction alpha-10 protein [Homo sapiens]. 242 4e-64
Alignment gi|NP_001073852.1| gap junction gamma-1 protein [Homo sapiens]. 206 3e-53
Alignment gi|NP_005488.2| gap junction gamma-1 protein [Homo sapiens]. 206 3e-53
>ref|NP_002051.2| gap junction alpha-4 protein [Homo sapiens].
Length = 333
Score = 486 bits (1250), Expect = e-137
Identities = 238/267 (89%), Positives = 244/267 (91%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG
Sbjct: 1 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD
Sbjct: 61 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 120
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
P+VERALAA+ERQMAKISVAEDG LRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT
Sbjct: 121 PQVERALAAVERQMAKISVAEDGRLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 180
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRGI 819
MEPVFVCQR+PCPYLVDCFVSRPTEKTIFIIFMLVVGLIS SRG+
Sbjct: 181 MEPVFVCQRAPCPYLVDCFVSRPTEKTIFIIFMLVVGLISLVLNLLELVHLLCRCLSRGM 240
Query: 820 RARREPDTPPAQGTSSEPYADQVFLYL 900
RAR+ D PP QGTSS+PY DQVF YL
Sbjct: 241 RARQGQDAPPTQGTSSDPYTDQVFFYL 267
>ref|NP_000156.1| gap junction alpha-1 protein [Homo sapiens].
Length = 382
Score = 280 bits (715), Expect = 2e-75
Identities = 129/220 (58%), Positives = 164/220 (74%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L KLLD+VQ +ST GK+WL+VLFIFRIL+LG A ES WGDEQS F CNT QPG
Sbjct: 1 MGDWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD++FPISH+R+WVLQ +FVS PTL+YL HV Y+ R+EE+L +KE EL+
Sbjct: 61 CENVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDG 120
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
V+ L IE + K + E G +++RG L+ TY+ S+L KS+ E FL QW +YG++
Sbjct: 121 VNVDMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSIFEVAFLLIQWYIYGFS 180
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ V+ C+R PCP+ VDCF+SRPTEKTIFIIFMLVV L+S
Sbjct: 181 LSAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSLVS 220
>ref|NP_068773.2| gap junction alpha-3 protein [Homo sapiens].
Length = 435
Score = 273 bits (699), Expect = 1e-73
Identities = 136/263 (51%), Positives = 177/263 (67%), Gaps = 5/263 (1%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +LL+ QEHSTV+GK+WLTVLFIFRIL+LG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEDVWGDEQSDFTCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGE---LRALP 450
C NVCYD+AFPISHIR+W LQ +FVSTPTL+YLGHV+++ R EE+ +++E E R P
Sbjct: 61 CENVCYDRAFPISHIRFWALQIIFVSTPTLIYLGHVLHIVRMEEKKKEREEEEQLKRESP 120
Query: 451 A-KDPRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRL 627
+ K+P + + +R G +R+ GAL+ TYV +++ K++ E GF+ GQ+ L
Sbjct: 121 SPKEPPQDNPSSRDDR----------GRVRMAGALLRTYVFNIIFKTLFEVGFIAGQYFL 170
Query: 628 YGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXX 807
YG+ ++P++ C R PCP VDCF+SRPTEKTIFIIFML V S
Sbjct: 171 YGFELKPLYRCDRWPCPNTVDCFISRPTEKTIFIIFMLAVACASLLLNMLEIYHLGWKKL 230
Query: 808 SRGIRARREPDTPPAQ-GTSSEP 873
+G+ +R PD A GT+ P
Sbjct: 231 KQGVTSRLGPDASEAPLGTADPP 253
>ref|NP_005257.2| gap junction alpha-5 protein [Homo sapiens].
Length = 358
Score = 258 bits (660), Expect = 4e-69
Identities = 122/222 (54%), Positives = 164/222 (73%), Gaps = 2/222 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL L++V +HSTVVGK+WLTVLFIFR+L+LG A ES WGDEQ+DF C+T QPG
Sbjct: 1 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYDQAFPISHIRYWVLQ +FVSTP+LVY+GH ++ R +E+ + +E E AK+
Sbjct: 61 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAE----RAKE 116
Query: 460 PRVERALAAIERQMAKISVAEDGHLRI--RGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
R + + A++S E+G+ RI +G L+ TYV S+L ++ +E GF+ GQ+ +YG
Sbjct: 117 VRGSGSYEYPVAEKAELSCWEEGNGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIYG 176
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ + VC+RSPCP+ V+C+VSRPTEK +FI+FML V +S
Sbjct: 177 IFLTTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALS 218
>ref|NP_859054.1| gap junction alpha-5 protein [Homo sapiens].
Length = 358
Score = 258 bits (660), Expect = 4e-69
Identities = 122/222 (54%), Positives = 164/222 (73%), Gaps = 2/222 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL L++V +HSTVVGK+WLTVLFIFR+L+LG A ES WGDEQ+DF C+T QPG
Sbjct: 1 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYDQAFPISHIRYWVLQ +FVSTP+LVY+GH ++ R +E+ + +E E AK+
Sbjct: 61 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAE----RAKE 116
Query: 460 PRVERALAAIERQMAKISVAEDGHLRI--RGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
R + + A++S E+G+ RI +G L+ TYV S+L ++ +E GF+ GQ+ +YG
Sbjct: 117 VRGSGSYEYPVAEKAELSCWEEGNGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIYG 176
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ + VC+RSPCP+ V+C+VSRPTEK +FI+FML V +S
Sbjct: 177 IFLTTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALS 218
>ref|NP_005258.2| gap junction alpha-8 protein [Homo sapiens].
Length = 433
Score = 249 bits (637), Expect = 2e-66
Identities = 120/222 (54%), Positives = 154/222 (69%), Gaps = 2/222 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+L+Y+GH ++ R EE+ + +E E A
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLMYVGHAVHYVRMEEKRKSREAEELGQQA-- 118
Query: 460 PRVERALAAIERQMAKISVAEDG--HLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
++ K S G R+ G L+ TY+ ++ K++ E GF+ G + LYG
Sbjct: 119 ----GTNGGPDQGSVKKSSGSKGTKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLYG 174
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ + P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 175 FRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVS 216
>ref|NP_110399.2| gap junction alpha-9 protein [Homo sapiens].
Length = 515
Score = 246 bits (629), Expect = 2e-65
Identities = 121/225 (53%), Positives = 157/225 (69%), Gaps = 5/225 (2%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L L++V HST++GKIWLT+LFIFR+L+LG+A E VW DEQS F CNT QPG
Sbjct: 1 MGDWNLLGDTLEEVHIHSTMIGKIWLTILFIFRMLVLGVAAEDVWNDEQSGFICNTEQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSR--REERLRQK---EGELRA 444
C NVCYDQAFPIS IRYWVLQ +FVS+P+LVY+GH +Y R EER R K EL
Sbjct: 61 CRNVCYDQAFPISLIRYWVLQVIFVSSPSLVYMGHALYRLRVLEEERQRMKAQLRVELEE 120
Query: 445 LPAKDPRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWR 624
+ + PR R L E+++ ++ + +RG L+ TYV + +SV+E GF+ GQ+
Sbjct: 121 VEFEMPRDRRRL---EQELCQLEKRKLNKAPLRGTLLCTYVIHIFTRSVVEVGFMIGQYL 177
Query: 625 LYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
LYG+ +EP+F C PCP ++DCFVSRPTEKTIF++FM + IS
Sbjct: 178 LYGFHLEPLFKCHGHPCPNIIDCFVSRPTEKTIFLLFMQSIATIS 222
>ref|NP_115991.1| gap junction alpha-10 protein [Homo sapiens].
Length = 543
Score = 242 bits (617), Expect = 4e-64
Identities = 117/222 (52%), Positives = 155/222 (69%), Gaps = 2/222 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L +L++V HST+VGKIWLT+LFIFR+L+L +A E VW DEQS F CNT QPG
Sbjct: 1 MGDWNLLGGILEEVHSHSTIVGKIWLTILFIFRMLVLRVAAEDVWDDEQSAFACNTRQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQ-KEGELRALPAK 456
C N+CYD AFPIS IR+WVLQ +FVS+P+LVY+GH +Y R E+ RQ K+ LRA
Sbjct: 61 CNNICYDDAFPISLIRFWVLQIIFVSSPSLVYMGHALYRLRAFEKDRQRKKSHLRAQMEN 120
Query: 457 DPRVERALAAIERQMAKISVAEDGH-LRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
I+R++ ++ + H + ++G L+ TYV +L +SVLE GF+ GQ+ LYG
Sbjct: 121 PDLDLEEQQRIDRELRRLEEQKRIHKVPLKGCLLRTYVLHILTRSVLEVGFMIGQYILYG 180
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ M P++ C + PCP VDCFVSRPTEKTIF++FM + IS
Sbjct: 181 FQMHPLYKCTQPPCPNAVDCFVSRPTEKTIFMLFMHSIAAIS 222
>ref|NP_001073852.1| gap junction gamma-1 protein [Homo sapiens].
Length = 396
Score = 206 bits (523), Expect = 3e-53
Identities = 103/239 (43%), Positives = 143/239 (59%), Gaps = 24/239 (10%)
Frame = +1
Query: 109 WGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCTN 288
W FL +LL+++ HST VGKIWLTVL +FRI++ + GES++ DEQS F CNT QPGC N
Sbjct: 3 WSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCEN 62
Query: 289 VCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREER------------------ 414
VCYD P+SH+R+WV Q + V+TP+++YLG+ I+ + E
Sbjct: 63 VCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMRWK 122
Query: 415 ----LRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIR-GALMGTYVASVL 579
L + E + P P +E ++ ++ DG RIR LM YV +L
Sbjct: 123 QHRALEETEEDNEEDPMMYPEMELESDKENKEQSQPKPKHDGRRRIREDGLMKIYVLQLL 182
Query: 580 CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFML-VVGL 753
++V E GFL GQ+ LYG+ + P +VC R PCP+ +DCF+SRPTEKTIF++ M V GL
Sbjct: 183 ARTVFEVGFLIGQYFLYGFQVHPFYVCSRLPCPHKIDCFISRPTEKTIFLLIMYGVTGL 241
>ref|NP_005488.2| gap junction gamma-1 protein [Homo sapiens].
Length = 396
Score = 206 bits (523), Expect = 3e-53
Identities = 103/239 (43%), Positives = 143/239 (59%), Gaps = 24/239 (10%)
Frame = +1
Query: 109 WGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCTN 288
W FL +LL+++ HST VGKIWLTVL +FRI++ + GES++ DEQS F CNT QPGC N
Sbjct: 3 WSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCEN 62
Query: 289 VCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREER------------------ 414
VCYD P+SH+R+WV Q + V+TP+++YLG+ I+ + E
Sbjct: 63 VCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMRWK 122
Query: 415 ----LRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIR-GALMGTYVASVL 579
L + E + P P +E ++ ++ DG RIR LM YV +L
Sbjct: 123 QHRALEETEEDNEEDPMMYPEMELESDKENKEQSQPKPKHDGRRRIREDGLMKIYVLQLL 182
Query: 580 CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFML-VVGL 753
++V E GFL GQ+ LYG+ + P +VC R PCP+ +DCF+SRPTEKTIF++ M V GL
Sbjct: 183 ARTVFEVGFLIGQYFLYGFQVHPFYVCSRLPCPHKIDCFISRPTEKTIFLLIMYGVTGL 241
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,549,147
Number of extensions: 857039
Number of successful extensions: 3679
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3638
Number of HSP's successfully gapped: 30
Length of query: 300
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,934,836
Effective search space: 2957097528
Effective search space used: 2957097528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003664
(902 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032146.1| gap junction alpha-4 protein [Mus musculus]. 465 e-131
Alignment gi|NP_034418.1| gap junction alpha-1 protein [Mus musculus]. 281 5e-76
Alignment gi|NP_058671.2| gap junction alpha-3 protein [Mus musculus]. 273 1e-73
Alignment gi|NP_032149.1| gap junction alpha-8 protein [Mus musculus]. 258 6e-69
Alignment gi|NP_001001496.1| gap junction alpha-6 protein [Mus musculus]. 256 2e-68
Alignment gi|NP_032147.1| gap junction alpha-5 protein [Mus musculus]. 251 4e-67
Alignment gi|NP_034419.2| gap junction alpha-10 protein [Mus musculus]. 246 2e-65
Alignment gi|NP_001152855.1| gap junction gamma-1 protein [Mus musculus]. 206 2e-53
Alignment gi|NP_001152854.1| gap junction gamma-1 protein [Mus musculus]. 206 2e-53
Alignment gi|NP_032148.1| gap junction gamma-1 protein [Mus musculus]. 206 2e-53
>ref|NP_032146.1| gap junction alpha-4 protein [Mus musculus].
Length = 333
Score = 465 bits (1196), Expect = e-131
Identities = 227/267 (85%), Positives = 240/267 (89%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG
Sbjct: 1 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
CTNVCYDQAFPISHIRYWVLQFLFVSTPTL+YLGHVIYLSRREERLRQKEGELRALP+KD
Sbjct: 61 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLIYLGHVIYLSRREERLRQKEGELRALPSKD 120
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
VERALAAIE QMAKISVAEDG LRIRGALMGTYV SVLCKSVLEAGFLYGQWRLYGWT
Sbjct: 121 LHVERALAAIEHQMAKISVAEDGRLRIRGALMGTYVVSVLCKSVLEAGFLYGQWRLYGWT 180
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRGI 819
MEPVFVCQR+PCP++VDC+VSRPTEKTIFIIFMLVVG+IS SR I
Sbjct: 181 MEPVFVCQRAPCPHIVDCYVSRPTEKTIFIIFMLVVGVISLVLNLLELVHLLCRCVSREI 240
Query: 820 RARREPDTPPAQGTSSEPYADQVFLYL 900
+ARR+ D PAQG++S+PY +QVF YL
Sbjct: 241 KARRDHDARPAQGSASDPYPEQVFFYL 267
>ref|NP_034418.1| gap junction alpha-1 protein [Mus musculus].
Length = 382
Score = 281 bits (719), Expect = 5e-76
Identities = 131/220 (59%), Positives = 164/220 (74%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L KLLD+VQ +ST GK+WL+VLFIFRIL+LG A ES WGDEQS F CNT QPG
Sbjct: 1 MGDWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD++FPISH+R+WVLQ +FVS PTL+YL HV Y+ R+EE+L +KE EL+
Sbjct: 61 CENVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDG 120
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
VE L IE + K + E G +++RG L+ TY+ S+L KSV E FL QW +YG++
Sbjct: 121 VNVEMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSVFEVAFLLIQWYIYGFS 180
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ V+ C+R PCP+ VDCF+SRPTEKTIFIIFMLVV L+S
Sbjct: 181 LSAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSLVS 220
>ref|NP_058671.2| gap junction alpha-3 protein [Mus musculus].
Length = 417
Score = 273 bits (699), Expect = 1e-73
Identities = 133/260 (51%), Positives = 173/260 (66%), Gaps = 2/260 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +LL+ QEHSTV+GK+WLTVLFIFRIL+LG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEEVWGDEQSDFTCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR+W LQ +FVSTPTL+YLGHV+++ R EE+ +++E EL L +
Sbjct: 61 CENVCYDRAFPISHIRFWALQIIFVSTPTLIYLGHVLHIVRMEEKKKEREEEL--LRRDN 118
Query: 460 PRVERALAAIERQMAKISVAED--GHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
P+ R + + D G +RI GAL+ TYV +++ K++ E GF+ GQ+ LYG
Sbjct: 119 PQHGRGREPMRTGSPRDPPLRDDRGKVRIAGALLRTYVFNIIFKTLFEVGFIAGQYFLYG 178
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSR 813
+ ++P++ C R PCP VDCF+SRPTEKTIF+IFML V S +
Sbjct: 179 FQLQPLYRCDRWPCPNTVDCFISRPTEKTIFVIFMLAVACASLVLNMLEIYHLGWKKLKQ 238
Query: 814 GIRARREPDTPPAQGTSSEP 873
G+ PD A+ +P
Sbjct: 239 GVTNHFNPDASEARHKPLDP 258
>ref|NP_032149.1| gap junction alpha-8 protein [Mus musculus].
Length = 440
Score = 258 bits (658), Expect = 6e-69
Identities = 123/223 (55%), Positives = 160/223 (71%), Gaps = 3/223 (1%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V EHSTV+G++WLTVLFIFRILILG A E VWGDEQSDF CNT QPG
Sbjct: 1 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD+AFPISHIR WVLQ +FVSTP+L+Y+GH ++ R EE+ + +E E ++
Sbjct: 61 CENVCYDEAFPISHIRLWVLQIIFVSTPSLMYVGHAVHHVRMEEKRKDREAEELCQQSRS 120
Query: 460 PRVERA-LAAIERQMAKISVAEDG--HLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY 630
ER +A + + K S + G R+ G L+ TYV ++ K++ E GF+ G + LY
Sbjct: 121 NGGERVPIAPDQASIRKSSSSSKGTKKFRLEGTLLRTYVCHIIFKTLFEVGFIVGHYFLY 180
Query: 631 GWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
G+ + P++ C R PCP +VDCFVSRPTEKTIFI+FML V +S
Sbjct: 181 GFRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVAFVS 223
>ref|NP_001001496.1| gap junction alpha-6 protein [Mus musculus].
Length = 283
Score = 256 bits (653), Expect = 2e-68
Identities = 119/220 (54%), Positives = 156/220 (70%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
M DW L +LL++VQ +ST GK+W+ VLFIFRIL+LG A ES W DEQ +F CNT QPG
Sbjct: 1 MSDWSALHQLLEKVQPYSTAGGKVWIKVLFIFRILLLGTAIESAWSDEQFEFHCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD AFPISH+R WVLQ +FVS P L+YL HV Y+ R+ ++L ++E EL A +
Sbjct: 61 CENVCYDHAFPISHVRLWVLQVIFVSVPILLYLAHVYYVVRQNKKLNKQEEELEAAHFNE 120
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
VER L I + K E +++RG L+ TY+AS+ KSV E FL QW +YG+T
Sbjct: 121 ASVERHLETIAGEQFKCGSEEQSKVKMRGRLLLTYMASIFFKSVFEMAFLLIQWYIYGFT 180
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ +++C++SPCP VDCF+SRPTEKTIFI+FM VV ++S
Sbjct: 181 LSALYICEQSPCPRRVDCFLSRPTEKTIFILFMFVVSVVS 220
>ref|NP_032147.1| gap junction alpha-5 protein [Mus musculus].
Length = 358
Score = 251 bits (642), Expect = 4e-67
Identities = 116/222 (52%), Positives = 163/222 (73%), Gaps = 2/222 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL + L++V +HSTV+GK+WLTVLFIFR+L+LG A ES WGDEQ+DF C+T QPG
Sbjct: 1 MGDWSFLGEFLEEVHKHSTVIGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYDQAFPISHIRYWVLQ +FVSTP+LVY+GH ++ R +E+ + ++ E AK+
Sbjct: 61 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKQKLRDAE----KAKE 116
Query: 460 PRVERALAAIERQMAKISVAE--DGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
A + A++S + DG + ++G L+ TYV ++L ++ +E F+ GQ+ LYG
Sbjct: 117 AHRTGAYEYPVAEKAELSCWKEVDGKIVLQGTLLNTYVCTILIRTTMEVAFIVGQYLLYG 176
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
++ + VC+RSPCP+ V+C+VSRPTEK +FI+FM+ V +S
Sbjct: 177 IFLDTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMMAVAGLS 218
>ref|NP_034419.2| gap junction alpha-10 protein [Mus musculus].
Length = 505
Score = 246 bits (627), Expect = 2e-65
Identities = 114/222 (51%), Positives = 159/222 (71%), Gaps = 2/222 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L +L++V HST+VGKIWLT+LFIFR+L+LG+A E VW DEQS F CNT QPG
Sbjct: 1 MGDWNLLGGILEEVHSHSTIVGKIWLTILFIFRMLVLGVAAEDVWDDEQSAFACNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C N+CYD AFPIS IR+WVLQ +FVS+P+LVY+GH +Y R E+ RQK+ ++
Sbjct: 61 CNNICYDDAFPISLIRFWVLQIIFVSSPSLVYMGHALYRLRDFEKQRQKKKLYLRAQMEN 120
Query: 460 PRVE-RALAAIERQMAKISVAEDGH-LRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
P ++ +++++ ++ + H + ++G L+ TYV +L +SVLE GF+ GQ+ LYG
Sbjct: 121 PELDLEEQQRVDKELRRLEEQKRIHKVPLKGCLLRTYVLHILTRSVLEVGFMIGQYILYG 180
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ M P++ C ++PCP VDCFVSRPTEKTIF++FM + IS
Sbjct: 181 FQMHPIYKCTQAPCPNSVDCFVSRPTEKTIFMLFMHSIAAIS 222
>ref|NP_001152855.1| gap junction gamma-1 protein [Mus musculus].
Length = 396
Score = 206 bits (524), Expect = 2e-53
Identities = 103/239 (43%), Positives = 143/239 (59%), Gaps = 24/239 (10%)
Frame = +1
Query: 109 WGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCTN 288
W FL +LL+++ HST VGKIWLTVL +FRI++ + GES++ DEQS F CNT QPGC N
Sbjct: 3 WSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCEN 62
Query: 289 VCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREER------------------ 414
VCYD P+SH+R+WV Q + V+TP+++YLG+ I+ + E
Sbjct: 63 VCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMRWK 122
Query: 415 ----LRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIR-GALMGTYVASVL 579
L + E + P P +E ++ ++ DG RIR LM YV +L
Sbjct: 123 QHRALEETEEDHEEDPMMYPEMELESEKENKEQSQPKPKHDGRRRIREDGLMKIYVLQLL 182
Query: 580 CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFML-VVGL 753
++V E GFL GQ+ LYG+ + P +VC R PCP+ +DCF+SRPTEKTIF++ M V GL
Sbjct: 183 ARTVFEVGFLIGQYFLYGFQVHPFYVCSRLPCPHKIDCFISRPTEKTIFLLIMYGVTGL 241
>ref|NP_001152854.1| gap junction gamma-1 protein [Mus musculus].
Length = 396
Score = 206 bits (524), Expect = 2e-53
Identities = 103/239 (43%), Positives = 143/239 (59%), Gaps = 24/239 (10%)
Frame = +1
Query: 109 WGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCTN 288
W FL +LL+++ HST VGKIWLTVL +FRI++ + GES++ DEQS F CNT QPGC N
Sbjct: 3 WSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCEN 62
Query: 289 VCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREER------------------ 414
VCYD P+SH+R+WV Q + V+TP+++YLG+ I+ + E
Sbjct: 63 VCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMRWK 122
Query: 415 ----LRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIR-GALMGTYVASVL 579
L + E + P P +E ++ ++ DG RIR LM YV +L
Sbjct: 123 QHRALEETEEDHEEDPMMYPEMELESEKENKEQSQPKPKHDGRRRIREDGLMKIYVLQLL 182
Query: 580 CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFML-VVGL 753
++V E GFL GQ+ LYG+ + P +VC R PCP+ +DCF+SRPTEKTIF++ M V GL
Sbjct: 183 ARTVFEVGFLIGQYFLYGFQVHPFYVCSRLPCPHKIDCFISRPTEKTIFLLIMYGVTGL 241
>ref|NP_032148.1| gap junction gamma-1 protein [Mus musculus].
Length = 396
Score = 206 bits (524), Expect = 2e-53
Identities = 103/239 (43%), Positives = 143/239 (59%), Gaps = 24/239 (10%)
Frame = +1
Query: 109 WGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCTN 288
W FL +LL+++ HST VGKIWLTVL +FRI++ + GES++ DEQS F CNT QPGC N
Sbjct: 3 WSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCEN 62
Query: 289 VCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREER------------------ 414
VCYD P+SH+R+WV Q + V+TP+++YLG+ I+ + E
Sbjct: 63 VCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMRWK 122
Query: 415 ----LRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIR-GALMGTYVASVL 579
L + E + P P +E ++ ++ DG RIR LM YV +L
Sbjct: 123 QHRALEETEEDHEEDPMMYPEMELESEKENKEQSQPKPKHDGRRRIREDGLMKIYVLQLL 182
Query: 580 CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFML-VVGL 753
++V E GFL GQ+ LYG+ + P +VC R PCP+ +DCF+SRPTEKTIF++ M V GL
Sbjct: 183 ARTVFEVGFLIGQYFLYGFQVHPFYVCSRLPCPHKIDCFISRPTEKTIFLLIMYGVTGL 241
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,428,007
Number of extensions: 708771
Number of successful extensions: 3005
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 2974
Number of HSP's successfully gapped: 27
Length of query: 300
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 199
Effective length of database: 12,583,923
Effective search space: 2504200677
Effective search space used: 2504200677
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003664
(902 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362236.1| PREDICTED: gap junction alpha-4 protein-like... 421 e-118
Alignment gi|XP_003121284.1| PREDICTED: gap junction alpha-1 protein-like... 281 3e-76
Alignment gi|XP_001928335.1| PREDICTED: gap junction alpha-5 protein-like... 253 1e-67
Alignment gi|XP_003356368.1| PREDICTED: gap junction alpha-9 protein-like... 248 4e-66
Alignment gi|XP_003131383.1| PREDICTED: gap junction gamma-1 protein-like... 204 5e-53
Alignment gi|NP_001090988.1| gap junction gamma-1 protein [Sus scrofa]. 204 5e-53
Alignment gi|XP_003123664.1| PREDICTED: gap junction gamma-2 protein-like... 199 2e-51
Alignment gi|XP_003135216.1| PREDICTED: gap junction beta-1 protein-like ... 189 2e-48
Alignment gi|XP_003135215.1| PREDICTED: gap junction beta-1 protein-like ... 189 2e-48
Alignment gi|XP_003135213.1| PREDICTED: gap junction beta-1 protein-like ... 189 2e-48
>ref|XP_003362236.1| PREDICTED: gap junction alpha-4 protein-like [Sus scrofa].
Length = 310
Score = 421 bits (1082), Expect = e-118
Identities = 215/262 (82%), Positives = 216/262 (82%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRIL WGDEQSDFECNTAQPG
Sbjct: 1 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILXXXXXXXXXWGDEQSDFECNTAQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKE
Sbjct: 61 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKE---------- 110
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
ALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYG
Sbjct: 111 --XXXALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGXX 168
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRGI 819
VFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS SRGI
Sbjct: 169 XXXVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISLVLNLLELAYLLCRCLSRGI 228
Query: 820 RARREPDTPPAQGTSSEPYADQ 885
RARR+ DTPPAQGTSSEPYADQ
Sbjct: 229 RARRDQDTPPAQGTSSEPYADQ 250
>ref|XP_003121284.1| PREDICTED: gap junction alpha-1 protein-like isoform 1 [Sus
scrofa].
Length = 382
Score = 281 bits (719), Expect = 3e-76
Identities = 131/220 (59%), Positives = 164/220 (74%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW L KLLD+VQ +ST GK+WL+VLFIFRIL+LG A ES WGDEQS F CNT QPG
Sbjct: 1 MGDWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYD++FPISH+R+WVLQ +FVS PTL+YL HV Y+ R+EE+L +KE EL+
Sbjct: 61 CENVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDG 120
Query: 460 PRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYGWT 639
VE L IE + K + E G +++RG L+ TY+ S+L KSV E FL QW +YG++
Sbjct: 121 VNVEMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSVFEVAFLLIQWYIYGFS 180
Query: 640 MEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
+ V+ C+R PCP+ VDCF+SRPTEKTIFIIFMLVV L+S
Sbjct: 181 LSAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSLVS 220
>ref|XP_001928335.1| PREDICTED: gap junction alpha-5 protein-like [Sus scrofa].
Length = 358
Score = 253 bits (645), Expect = 1e-67
Identities = 118/222 (53%), Positives = 164/222 (73%), Gaps = 2/222 (0%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL + L++V +HSTV+GK+WLTVLFIFR+L+LG A ES WGDEQ+DF+C+T QPG
Sbjct: 1 MGDWSFLGEFLEEVHKHSTVIGKVWLTVLFIFRMLVLGTAAESSWGDEQADFQCDTMQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD 459
C NVCYDQAFPISHIRYWVLQ +FVSTP+LVY+GH ++ R +E+ + +E E AK+
Sbjct: 61 CENVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRVQEKRKLREAE----RAKE 116
Query: 460 PRVERALAAIERQMAKISVAED--GHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLYG 633
R + + ++S E+ G + ++G L+ TYV S+L ++ +E F+ GQ+ LYG
Sbjct: 117 VRGAGSYEYPVAEKTELSCWEEVNGRIVLQGTLLNTYVFSILIRTTMEVAFIVGQYLLYG 176
Query: 634 WTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
++ + VC+RSPCP+ V+C+VSRPTEK +FI+FML V +S
Sbjct: 177 IFLDTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAGLS 218
>ref|XP_003356368.1| PREDICTED: gap junction alpha-9 protein-like [Sus scrofa].
Length = 515
Score = 248 bits (632), Expect = 4e-66
Identities = 122/229 (53%), Positives = 163/229 (71%), Gaps = 9/229 (3%)
Frame = +1
Query: 100 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG 279
MGDW FL +L++V HST++GKIWLT+LFIFR+L+LG+A E VW DEQS F CNT QPG
Sbjct: 1 MGDWNFLGGILEEVHIHSTMIGKIWLTILFIFRMLVLGVAAEDVWNDEQSGFICNTEQPG 60
Query: 280 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQ-KEGELRA---- 444
C NVCYDQAFPIS IRYWVLQ +FVS+P+LVY+GH +Y R E+ RQ K+ +LR
Sbjct: 61 CRNVCYDQAFPISLIRYWVLQVIFVSSPSLVYMGHALYRLRVLEKERQVKKAQLRGELEG 120
Query: 445 ----LPAKDPRVERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLY 612
+P R+E+ L +E+ K++ A +RG L+ TYV + +SV+E GF+
Sbjct: 121 VELEMPGDRKRLEQELYQLEQW--KLNKAP-----LRGTLLCTYVIHIFTRSVVEVGFMI 173
Query: 613 GQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLIS 759
GQ+ LYG+ +EP++ CQ PCP ++DCFVSRPTEKTIF++FM + +S
Sbjct: 174 GQYLLYGFHLEPLYKCQGHPCPNIIDCFVSRPTEKTIFLLFMQSIATVS 222
>ref|XP_003131383.1| PREDICTED: gap junction gamma-1 protein-like [Sus scrofa].
Length = 396
Score = 204 bits (519), Expect = 5e-53
Identities = 102/239 (42%), Positives = 142/239 (59%), Gaps = 24/239 (10%)
Frame = +1
Query: 109 WGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCTN 288
W FL +LL+++ HST VGKIWLTVL +FRI++ + GES++ DEQS F CNT QPGC N
Sbjct: 3 WSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCEN 62
Query: 289 VCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREER------------------ 414
VCYD P+SH+R+WV Q + V+TP+++YLG+ I+ + E
Sbjct: 63 VCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMRWK 122
Query: 415 ----LRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIR-GALMGTYVASVL 579
L + E + P P +E ++ + DG RIR LM YV +L
Sbjct: 123 QHRALEETEEDHEEDPMMYPEMELESEKENKEQNQSKPKHDGRRRIREDGLMKIYVLQLL 182
Query: 580 CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFML-VVGL 753
+++ E GFL GQ+ LYG+ + P +VC R PCP+ +DCF+SRPTEKTIF++ M V GL
Sbjct: 183 ARTMFEVGFLIGQYFLYGFQVHPFYVCSRVPCPHKIDCFISRPTEKTIFLLIMYGVTGL 241
>ref|NP_001090988.1| gap junction gamma-1 protein [Sus scrofa].
Length = 396
Score = 204 bits (519), Expect = 5e-53
Identities = 102/239 (42%), Positives = 142/239 (59%), Gaps = 24/239 (10%)
Frame = +1
Query: 109 WGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCTN 288
W FL +LL+++ HST VGKIWLTVL +FRI++ + GES++ DEQS F CNT QPGC N
Sbjct: 3 WSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCEN 62
Query: 289 VCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREER------------------ 414
VCYD P+SH+R+WV Q + V+TP+++YLG+ I+ + E
Sbjct: 63 VCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMRWK 122
Query: 415 ----LRQKEGELRALPAKDPRVERALAAIERQMAKISVAEDGHLRIR-GALMGTYVASVL 579
L + E + P P +E ++ + DG RIR LM YV +L
Sbjct: 123 QHRALEETEEDHEEDPMMYPEMELESEKENKEQNQSKPKHDGRRRIREDGLMKIYVLQLL 182
Query: 580 CKSVLEAGFLYGQWRLYGWTMEPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFML-VVGL 753
+++ E GFL GQ+ LYG+ + P +VC R PCP+ +DCF+SRPTEKTIF++ M V GL
Sbjct: 183 ARTMFEVGFLIGQYFLYGFQVHPFYVCSRVPCPHKIDCFISRPTEKTIFLLIMYGVTGL 241
>ref|XP_003123664.1| PREDICTED: gap junction gamma-2 protein-like [Sus scrofa].
Length = 432
Score = 199 bits (506), Expect = 2e-51
Identities = 107/304 (35%), Positives = 151/304 (49%), Gaps = 54/304 (17%)
Frame = +1
Query: 109 WGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCTN 288
W FL +LL+++ HST VGK+WLTVL +FRI++ + GES++ DEQ+ F CNT QPGC N
Sbjct: 6 WSFLTRLLEEIHNHSTFVGKVWLTVLVVFRIVLTAVGGESIYSDEQTKFTCNTRQPGCDN 65
Query: 289 VCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKDPRV 468
VCYD P+SH+R+WV Q + +STP+++YLG+ ++ R + ++ R PR
Sbjct: 66 VCYDAFAPLSHVRFWVFQIVVISTPSVMYLGYAVHRLARASQDERRRASRRRPGRHPPRA 125
Query: 469 --------------------ERALAAIERQMAKISVAE---------------------- 522
E + + + + VAE
Sbjct: 126 PLPLPPPPHPGWPEPADLGEEEPMLGLGEEDEEPGVAEGLGEDDAAEDAGVAKGPGGDTK 185
Query: 523 -----------DGHLRI-RGALMGTYVASVLCKSVLEAGFLYGQWRLYGWTMEPVFVCQR 666
DG RI R LM YVA ++ ++ E FL GQ+ LYG+ + P F C R
Sbjct: 186 AAGTLGPAGQHDGRRRIQREGLMRVYVAQLVARAAFEVAFLVGQYLLYGFEVRPFFPCSR 245
Query: 667 SPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRGIRARREPDTP 846
PCP++VDCFVSRPTEKTIF++ M VV + +R+RR T
Sbjct: 246 QPCPHVVDCFVSRPTEKTIFLLVMYVVSCLCLLLNLCEMAHLGLGSAQDAVRSRRPLPTA 305
Query: 847 PAQG 858
P G
Sbjct: 306 PGPG 309
>ref|XP_003135216.1| PREDICTED: gap junction beta-1 protein-like isoform 7 [Sus scrofa].
Length = 284
Score = 189 bits (479), Expect = 2e-48
Identities = 105/253 (41%), Positives = 141/253 (55%), Gaps = 1/253 (0%)
Frame = +1
Query: 106 DWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCT 285
+W L LL V HST +G++WL+V+FIFRI++L +A ESVWGDE+S F CNT QPGC
Sbjct: 2 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 61
Query: 286 NVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKDPR 465
+VCYD FPISH+R W LQ + VSTP L+ HV + E+++ + EG L
Sbjct: 62 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPL------ 115
Query: 466 VERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY-GWTM 642
L ++R IS G L TYV SV+ + + EA F+Y + LY G+ M
Sbjct: 116 ---HLEEVKRHKVHIS----------GTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 162
Query: 643 EPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRGIR 822
+ C+ PCP VDCFVSRPTEKT+F +FML I +R R
Sbjct: 163 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR--R 220
Query: 823 ARREPDTPPAQGT 861
A+R + P +G+
Sbjct: 221 AQRRSNPPSRKGS 233
>ref|XP_003135215.1| PREDICTED: gap junction beta-1 protein-like isoform 6 [Sus scrofa].
Length = 284
Score = 189 bits (479), Expect = 2e-48
Identities = 105/253 (41%), Positives = 141/253 (55%), Gaps = 1/253 (0%)
Frame = +1
Query: 106 DWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCT 285
+W L LL V HST +G++WL+V+FIFRI++L +A ESVWGDE+S F CNT QPGC
Sbjct: 2 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 61
Query: 286 NVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKDPR 465
+VCYD FPISH+R W LQ + VSTP L+ HV + E+++ + EG L
Sbjct: 62 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPL------ 115
Query: 466 VERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY-GWTM 642
L ++R IS G L TYV SV+ + + EA F+Y + LY G+ M
Sbjct: 116 ---HLEEVKRHKVHIS----------GTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 162
Query: 643 EPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRGIR 822
+ C+ PCP VDCFVSRPTEKT+F +FML I +R R
Sbjct: 163 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR--R 220
Query: 823 ARREPDTPPAQGT 861
A+R + P +G+
Sbjct: 221 AQRRSNPPSRKGS 233
>ref|XP_003135213.1| PREDICTED: gap junction beta-1 protein-like isoform 4 [Sus scrofa].
Length = 284
Score = 189 bits (479), Expect = 2e-48
Identities = 105/253 (41%), Positives = 141/253 (55%), Gaps = 1/253 (0%)
Frame = +1
Query: 106 DWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCT 285
+W L LL V HST +G++WL+V+FIFRI++L +A ESVWGDE+S F CNT QPGC
Sbjct: 2 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 61
Query: 286 NVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKDPR 465
+VCYD FPISH+R W LQ + VSTP L+ HV + E+++ + EG L
Sbjct: 62 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPL------ 115
Query: 466 VERALAAIERQMAKISVAEDGHLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY-GWTM 642
L ++R IS G L TYV SV+ + + EA F+Y + LY G+ M
Sbjct: 116 ---HLEEVKRHKVHIS----------GTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 162
Query: 643 EPVFVCQRSPCPYLVDCFVSRPTEKTIFIIFMLVVGLISXXXXXXXXXXXXXXXXSRGIR 822
+ C+ PCP VDCFVSRPTEKT+F +FML I +R R
Sbjct: 163 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR--R 220
Query: 823 ARREPDTPPAQGT 861
A+R + P +G+
Sbjct: 221 AQRRSNPPSRKGS 233
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,666,921
Number of extensions: 559713
Number of successful extensions: 2688
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 2653
Number of HSP's successfully gapped: 24
Length of query: 300
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,904,026
Effective search space: 1798613252
Effective search space used: 1798613252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003664
(902 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896498.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 444 e-122
Sscrofa_Chr04 103 2e-19
>gb|GL896498.1| Sus scrofa unplaced genomic scaffold chrU_scaffold832
Length = 16096
Score = 444 bits (224), Expect = e-122
Identities = 233/236 (98%)
Strand = Plus / Minus
Query: 649 gtgtttgtgtgccagcgctcaccctgtccctacctcgtagactgcttcgtctcacgcccc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13981 gtgtttgtgtgccagcgctcaccctgtccctacctcgtagactgcttcgtctcacgcccc 13922
Query: 709 acagagaagaccattttcatcatcttcatgctggtggtcggactcatctccctggtgctc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13921 acagagaagaccattttcatcatcttcatgctggtggtcggactcatctccctggtgctc 13862
Query: 769 aacctgctggagctggcgtacctgctgtgccgctgcctcagccggggcatcagggcccgg 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13861 aacctgctggagctggcgtacctgctgtgccgctgcctcagccggggcatcagggcccgg 13802
Query: 829 agggaaccagacacaccccccgcccagggcacctcctcggagccttacgctgacca 884
||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13801 agggaccaggacacaccccccgcccagggcacctcctcggagccttacgctgacca 13746
Score = 396 bits (200), Expect = e-108
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 231 gtggggcgatgagcagtcggacttcgagtgtaacactgcccagccaggctgcaccaacgt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14541 gtggggcgatgagcagtcggacttcgagtgtaacactgcccagccaggctgcaccaacgt 14482
Query: 291 gtgctacgaccaggccttccccatctcccacatccgctactgggtgctgcagttcctctt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14481 gtgctacgaccaggccttccccatctcccacatccgctactgggtgctgcagttcctctt 14422
Query: 351 cgtcagcacgcccaccctggtctacctgggccacgtcatttacctgtctcggcgcgagga 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14421 cgtcagcacgcccaccctggtctacctgggccacgtcatttacctgtctcggcgcgagga 14362
Query: 411 gcggctgcggcagaaggaag 430
||||||||||||||||||||
Sbjct: 14361 gcggctgcggcagaaggaag 14342
Score = 317 bits (160), Expect = 6e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 473 gggcgctggcagccatagagcgacagatggccaagatctcagtggccgaggatggtcacc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14241 gggcgctggcagccatagagcgacagatggccaagatctcagtggccgaggatggtcacc 14182
Query: 533 tgcgaatccgaggggccctgatgggcacctatgtggccagcgtgctctgcaagagtgtgc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14181 tgcgaatccgaggggccctgatgggcacctatgtggccagcgtgctctgcaagagtgtgc 14122
Query: 593 tagaggcaggcttcctgtatggccagtggcgtctctatgg 632
||||||||||||||||||||||||||||||||||||||||
Sbjct: 14121 tagaggcaggcttcctgtatggccagtggcgtctctatgg 14082
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 81 agacagaggcccaggagccatgggcgactggggcttccttgagaagctgctggaccaggt 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14765 agacagaggcccaggagccatgggcgactggggcttccttgagaagctgctggaccaggt 14706
Query: 141 ccaggagcactcgaccgtggtgggcaagatctggctgacggtcctgttcatcttccgcat 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14705 ccaggagcactcgaccgtggtgggcaagatctggctgacggtcctgttcatcttccgcat 14646
Query: 201 cctc 204
||||
Sbjct: 14645 cctc 14642
Score = 89.7 bits (45), Expect = 2e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 38 gtgtgtccgcaccgccacctgggccgcggagcaggcaggcaggag 82
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16096 gtgtgtccgcaccgccacctgggccgcggagcaggcaggcaggag 16052
>Sscrofa_Chr04
|| Length = 143465943
Score = 103 bits (52), Expect = 2e-19
Identities = 139/168 (82%)
Strand = Plus / Minus
Query: 187 ttcatcttccgcatcctcatcctgggcctggcgggcgagtcggtgtggggcgatgagcag 246
||||||||||||||||||||||| ||| ||| | |||| |||||||| || ||||||
Sbjct: 109557980 ttcatcttccgcatcctcatccttggcacggccgcggagttcgtgtggggggacgagcag 109557921
Query: 247 tcggacttcgagtgtaacactgcccagccaggctgcaccaacgtgtgctacgaccaggcc 306
|| ||||||| ||| ||||| ||||| || ||| ||||| ||||||||| |||||
Sbjct: 109557920 tccgacttcgtgtgcaacacccagcagcccggttgcgagaacgtctgctacgacgaggcc 109557861
Query: 307 ttccccatctcccacatccgctactgggtgctgcagttcctcttcgtc 354
||||||||||||||||||||| |||||| |||||| || ||||||||
Sbjct: 109557860 ttccccatctcccacatccgcctctgggtcctgcagatcatcttcgtc 109557813
Score = 91.7 bits (46), Expect = 6e-16
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 286 aacgtgtgctacgaccaggccttccccatctcccacatccgctactgggtgctgcagttc 345
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||
Sbjct: 109701753 aacgtgtgctacgaccaagccttccccatctcccacattcgctattgggtgctgcagatc 109701812
Query: 346 ctcttcgtcagcacgcccaccctggtctacctgggcca 383
|||| ||| ||| ||| | ||||| ||| |||||||
Sbjct: 109701813 atctttgtctccacaccctctctggtgtacatgggcca 109701850
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,697,391
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 7
Length of query: 902
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 881
Effective length of database: 2,808,413,156
Effective search space: 2474211990436
Effective search space used: 2474211990436
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)