Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003668
(960 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180015.1| U4/U6.U5 tri-snRNP-associated protein 1 [Bos... 342 2e-94
Alignment gi|XP_002699398.1| PREDICTED: squamous cell carcinoma antigen r... 342 2e-94
>ref|NP_001180015.1| U4/U6.U5 tri-snRNP-associated protein 1 [Bos taurus].
Length = 802
Score = 342 bits (878), Expect = 2e-94
Identities = 191/290 (65%), Positives = 194/290 (66%)
Frame = +2
Query: 89 KKHRGEKEXXXXXXXXXXXXXXEQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
KKHRGEKE EQPP
Sbjct: 5 KKHRGEKEAAGTTAAASTGGATEQPPRHREHKKHKHRSSGGGSSGGERRKRSRERGSERG 64
Query: 269 XXXXXXXXXXRSSTHGRERSQTEPSERRVKREKRDEGYEXXXXXXXXXXXXXXXXIEETN 448
RSSTHGRERSQTEPSERRVKREKRD+GYE IEETN
Sbjct: 65 SGRRGAENEARSSTHGRERSQTEPSERRVKREKRDDGYEAAASSKASSGDASSLSIEETN 124
Query: 449 KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPMXXXXXXXXXXXXXXXXXXXXXNQKL 628
KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPM NQKL
Sbjct: 125 KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRILNQKL 184
Query: 629 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR 808
GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR
Sbjct: 185 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR 244
Query: 809 RQDLYSARDLQGLTVEHAIDAFREGETVILTLQDKGVLQEGEDVLVNVNL 958
RQDLYSARDLQGLTVEHAID+FREGETVILTL+DKGVLQE EDVLVNVNL
Sbjct: 245 RQDLYSARDLQGLTVEHAIDSFREGETVILTLKDKGVLQEEEDVLVNVNL 294
>ref|XP_002699398.1| PREDICTED: squamous cell carcinoma antigen recognized by T cells
[Bos taurus].
Length = 802
Score = 342 bits (878), Expect = 2e-94
Identities = 191/290 (65%), Positives = 194/290 (66%)
Frame = +2
Query: 89 KKHRGEKEXXXXXXXXXXXXXXEQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
KKHRGEKE EQPP
Sbjct: 5 KKHRGEKEAAGTTAAASTGGATEQPPRHREHKKHKHRSSGGGSSGGERRKRSRERGSERG 64
Query: 269 XXXXXXXXXXRSSTHGRERSQTEPSERRVKREKRDEGYEXXXXXXXXXXXXXXXXIEETN 448
RSSTHGRERSQTEPSERRVKREKRD+GYE IEETN
Sbjct: 65 SGRRGAENEARSSTHGRERSQTEPSERRVKREKRDDGYEAAASSKASSGDASSLSIEETN 124
Query: 449 KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPMXXXXXXXXXXXXXXXXXXXXXNQKL 628
KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPM NQKL
Sbjct: 125 KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRILNQKL 184
Query: 629 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR 808
GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR
Sbjct: 185 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR 244
Query: 809 RQDLYSARDLQGLTVEHAIDAFREGETVILTLQDKGVLQEGEDVLVNVNL 958
RQDLYSARDLQGLTVEHAID+FREGETVILTL+DKGVLQE EDVLVNVNL
Sbjct: 245 RQDLYSARDLQGLTVEHAIDSFREGETVILTLKDKGVLQEEEDVLVNVNL 294
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,290,159
Number of extensions: 698075
Number of successful extensions: 3873
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3828
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 218
Effective length of database: 14,306,398
Effective search space: 3118794764
Effective search space used: 3118794764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003668
(960 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540842.2| PREDICTED: similar to squamous cell carcinoma a... 325 3e-89
>ref|XP_540842.2| PREDICTED: similar to squamous cell carcinoma antigen recognized by
T cells 1 [Canis familiaris].
Length = 815
Score = 325 bits (834), Expect = 3e-89
Identities = 172/220 (78%), Positives = 175/220 (79%)
Frame = +2
Query: 299 RSSTHGRERSQTEPSERRVKREKRDEGYEXXXXXXXXXXXXXXXXIEETNKLRAKLGLKP 478
RS HGRER Q EPSERRVKREKRD+GYE IEETNKLRAKLGLKP
Sbjct: 94 RSGAHGRERGQAEPSERRVKREKRDDGYEAAASSKSSSGDASSLSIEETNKLRAKLGLKP 153
Query: 479 LEVNAVKKEAGTKEEPVTADVINPMXXXXXXXXXXXXXXXXXXXXXNQKLGKIKTLGEDD 658
LEVNAVKKE GTKEEPV ADVINPM NQKLGKIKTLGEDD
Sbjct: 154 LEVNAVKKETGTKEEPVAADVINPMALRQREELREKLAAAKEKRLLNQKLGKIKTLGEDD 213
Query: 659 PWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQRRQDLYSARDL 838
PWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEF QRRQDLYSARDL
Sbjct: 214 PWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFGQRRQDLYSARDL 273
Query: 839 QGLTVEHAIDAFREGETVILTLQDKGVLQEGEDVLVNVNL 958
QGLTVEHAID+FREGETVILTL+DKGVLQE EDVLVNVNL
Sbjct: 274 QGLTVEHAIDSFREGETVILTLKDKGVLQEEEDVLVNVNL 313
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,996,337
Number of extensions: 615002
Number of successful extensions: 4042
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4009
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 217
Effective length of database: 15,440,896
Effective search space: 3350674432
Effective search space used: 3350674432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003668
(960 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005137.1| U4/U6.U5 tri-snRNP-associated protein 1 [Homo s... 336 2e-92
>ref|NP_005137.1| U4/U6.U5 tri-snRNP-associated protein 1 [Homo sapiens].
Length = 800
Score = 336 bits (862), Expect = 2e-92
Identities = 187/290 (64%), Positives = 192/290 (66%)
Frame = +2
Query: 89 KKHRGEKEXXXXXXXXXXXXXXEQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
KKHRGEKE EQPP
Sbjct: 5 KKHRGEKEAAGTTAAAGTGGATEQPPRHREHKKHKHRSGGSGGSGGERRKRSRERGGERG 64
Query: 269 XXXXXXXXXXRSSTHGRERSQTEPSERRVKREKRDEGYEXXXXXXXXXXXXXXXXIEETN 448
RSSTHGRERSQ EPSERRVKREKRD+GYE IEETN
Sbjct: 65 SGRRGAEAEARSSTHGRERSQAEPSERRVKREKRDDGYEAAASSKTSSGDASSLSIEETN 124
Query: 449 KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPMXXXXXXXXXXXXXXXXXXXXXNQKL 628
KLRAKLGLKPLEVNA+KKEAGTKEEPVTADVINPM NQKL
Sbjct: 125 KLRAKLGLKPLEVNAIKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRLLNQKL 184
Query: 629 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR 808
GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEF QR
Sbjct: 185 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFGQR 244
Query: 809 RQDLYSARDLQGLTVEHAIDAFREGETVILTLQDKGVLQEGEDVLVNVNL 958
RQDLYSARDLQGLTVEHAID+FREGET+ILTL+DKGVLQE EDVLVNVNL
Sbjct: 245 RQDLYSARDLQGLTVEHAIDSFREGETMILTLKDKGVLQEEEDVLVNVNL 294
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,151,660
Number of extensions: 577529
Number of successful extensions: 3598
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3552
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 217
Effective length of database: 14,901,872
Effective search space: 3233706224
Effective search space used: 3233706224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003668
(960 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058578.3| U4/U6.U5 tri-snRNP-associated protein 1 [Mus mu... 336 2e-92
>ref|NP_058578.3| U4/U6.U5 tri-snRNP-associated protein 1 [Mus musculus].
Length = 806
Score = 336 bits (861), Expect = 2e-92
Identities = 185/290 (63%), Positives = 191/290 (65%)
Frame = +2
Query: 89 KKHRGEKEXXXXXXXXXXXXXXEQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
KKHRGEKE EQPP
Sbjct: 5 KKHRGEKEAAGTTAAAGTGGTTEQPPRHREHKKHKHRSSGGGSSGGERRKRSRERGSERG 64
Query: 269 XXXXXXXXXXRSSTHGRERSQTEPSERRVKREKRDEGYEXXXXXXXXXXXXXXXXIEETN 448
RS HGRERSQ EPSERRVKREKRD+GYE IEETN
Sbjct: 65 SGRRGAEAEARSGAHGRERSQAEPSERRVKREKRDDGYEAAASSKASSGDASSLSIEETN 124
Query: 449 KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPMXXXXXXXXXXXXXXXXXXXXXNQKL 628
KLRAKLGLKPLEVNAVKKEAGTKEEPV ADVINPM NQKL
Sbjct: 125 KLRAKLGLKPLEVNAVKKEAGTKEEPVAADVINPMALRQREELREKLAAAKEKRLLNQKL 184
Query: 629 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR 808
GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR
Sbjct: 185 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR 244
Query: 809 RQDLYSARDLQGLTVEHAIDAFREGETVILTLQDKGVLQEGEDVLVNVNL 958
RQDLYSARDLQGLTVEHAID+FREGETV+LTL+DKGVLQ+GEDVLVNVN+
Sbjct: 245 RQDLYSARDLQGLTVEHAIDSFREGETVVLTLKDKGVLQDGEDVLVNVNM 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,886,057
Number of extensions: 476945
Number of successful extensions: 2789
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2749
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 219
Effective length of database: 12,583,923
Effective search space: 2755879137
Effective search space used: 2755879137
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003668
(960 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122565.2| PREDICTED: u4/U6.U5 tri-snRNP-associated pro... 345 3e-95
>ref|XP_003122565.2| PREDICTED: u4/U6.U5 tri-snRNP-associated protein 1 [Sus scrofa].
Length = 553
Score = 345 bits (884), Expect = 3e-95
Identities = 193/290 (66%), Positives = 194/290 (66%)
Frame = +2
Query: 89 KKHRGEKEXXXXXXXXXXXXXXEQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
KKHRGEKE EQPP
Sbjct: 5 KKHRGEKEAAGTTAGASTGSATEQPPRHREHKKHKHRSSGGGSSGGERRKRSRERGSERG 64
Query: 269 XXXXXXXXXXRSSTHGRERSQTEPSERRVKREKRDEGYEXXXXXXXXXXXXXXXXIEETN 448
RSSTHGRERSQTEPSERRVKREKRDEGYE IEETN
Sbjct: 65 SGRRGAEAEARSSTHGRERSQTEPSERRVKREKRDEGYEAAASSKTSSGDASSLSIEETN 124
Query: 449 KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPMXXXXXXXXXXXXXXXXXXXXXNQKL 628
KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPM NQKL
Sbjct: 125 KLRAKLGLKPLEVNAVKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRLLNQKL 184
Query: 629 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR 808
GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR
Sbjct: 185 GKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEEFEQR 244
Query: 809 RQDLYSARDLQGLTVEHAIDAFREGETVILTLQDKGVLQEGEDVLVNVNL 958
RQDLYSARDLQGLTVEHAIDAFREGETVILTL+DKGVLQE EDVLVNVNL
Sbjct: 245 RQDLYSARDLQGLTVEHAIDAFREGETVILTLKDKGVLQEEEDVLVNVNL 294
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,084,010
Number of extensions: 618647
Number of successful extensions: 2518
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2484
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,879,129
Effective search space: 1962287509
Effective search space used: 1962287509
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003668
(960 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 283 9e-74
>Sscrofa_Chr02
|| Length = 162569375
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 58 ctcgggtggacctaccaccatggggtcgtcaaagaagcaccgcggggagaaggaggcggc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5476958 ctcgggtggacctaccaccatggggtcgtcaaagaagcaccgcggggagaaggaggcggc 5476899
Query: 118 cgggactacggcaggagcgagcaccgggagcgccaccgagcagccgcctcggcaccggga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5476898 cgggactacggcaggagcgagcaccgggagcgccaccgagcagccgcctcggcaccggga 5476839
Query: 178 gcacaaaaaacacaagcaccgga 200
|||||||||||||||||||||||
Sbjct: 5476838 gcacaaaaaacacaagcaccgga 5476816
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 503 gaggcgggcaccaaggaggagcccgtgactgccgatgtcatcaaccccatggccttgcga 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473403 gaggcgggcaccaaggaggagcccgtgactgccgatgtcatcaaccccatggccttgcga 5473344
Query: 563 cagcgagaagaactccgagagaagctggcggctgccaaagaaaagcgcctcctcaaccag 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473343 cagcgagaagaactccgagagaagctggcggctgccaaagaaaagcgcctcctcaaccag 5473284
Query: 623 aagctgggg 631
|||||||||
Sbjct: 5473283 aagctgggg 5473275
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 630 ggaagataaagactctgggggaggatgacccctggctggacgacactgcagcctggatcg 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473151 ggaagataaagactctgggggaggatgacccctggctggacgacactgcagcctggatcg 5473092
Query: 690 agaggagccggcagcttcagaaggagaaggacctggcagagaagaggg 737
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473091 agaggagccggcagcttcagaaggagaaggacctggcagagaagaggg 5473044
Score = 188 bits (95), Expect = 4e-45
Identities = 101/103 (98%)
Strand = Plus / Minus
Query: 813 aggacctgtacagcgcccgggacctgcagggcctcaccgtggagcacgccatcgacgcct 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5472311 aggacctgtacagcgcccgggacctgcagggcctcaccgtggagcacgccatcgacgcct 5472252
Query: 873 tccgagagggggagacggtgatcctcacccttcaggacaaagg 915
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5472251 tccgagagggggagacggtgatcctcaccctcaaggacaaagg 5472209
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 298 ccgcagcagcacgcacgggcgggagcgtagccagacagagccctccgagcgccgcgtgaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5476718 ccgcagcagcacgcacgggcgggagcgtagccagacagagccctccgagcgccgcgtgaa 5476659
Query: 358 gcgggagaagcgagatgaaggctacgaggccg 389
||||||||||||||||||||||||||||||||
Sbjct: 5476658 gcgggagaagcgagatgaaggctacgaggccg 5476627
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 736 ggccaagctgctggaggagatggaccaggagtttggtgtcagcaccctggtggaggaaga 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5472497 ggccaagctgctggaggagatggaccaggagtttggtgtcagcaccctggtggaggaaga 5472438
Query: 796 gttcgagcagaggcggcagg 815
||||||||||||||||||||
Sbjct: 5472437 gttcgagcagaggcggcagg 5472418
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 389 gctgccagctccaagactagctcgggcgatgcctcgtcactcagcatcgaggagaccaa 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5474569 gctgccagctccaagactagctcgggcgatgcctcgtcactcagcatcgaggagaccaa 5474511
Score = 111 bits (56), Expect = 7e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 448 taaactccgggcaaagttggggctgaaacccttggaagtcaatgccgtcaagaagg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5474123 taaactccgggcaaagttggggctgaaacccttggaagtcaatgccgtcaagaagg 5474068
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,777,564
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 8
Length of query: 960
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 939
Effective length of database: 2,808,413,156
Effective search space: 2637099953484
Effective search space used: 2637099953484
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)