Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003672
(1097 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068708.1| nuclear factor interleukin-3-regulated prote... 321 8e-88
Alignment gi|XP_002688938.1| PREDICTED: nuclear factor, interleukin 3, re... 109 5e-24
Alignment gi|XP_002704846.1| PREDICTED: nuclear factor, interleukin 3, re... 109 5e-24
Alignment gi|NP_001179366.1| hepatic leukemia factor [Bos taurus]. 62 1e-09
Alignment gi|XP_002695596.1| PREDICTED: hepatic leukemia factor-like [Bos... 62 1e-09
Alignment gi|NP_001032522.1| D site-binding protein [Bos taurus]. 59 8e-09
>ref|NP_001068708.1| nuclear factor interleukin-3-regulated protein [Bos taurus].
Length = 462
Score = 321 bits (822), Expect = 8e-88
Identities = 170/213 (79%), Positives = 179/213 (84%)
Frame = +2
Query: 407 MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVAXXXXXXXXXXXXXXSVGKNKSSAC 586
MQLRKMQSIKKEQASLDAG+++DKMMVLNSAL+EV+ SVGKNKSSAC
Sbjct: 1 MQLRKMQSIKKEQASLDAGTNVDKMMVLNSALTEVSEDLTTGEELLLNEGSVGKNKSSAC 60
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL
Sbjct: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
Query: 767 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK 946
SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDE EPSMVASSCISVIK
Sbjct: 121 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEHEPSMVASSCISVIK 180
Query: 947 HXXXXXXXXXXXXXXXKHSHEGPAQGGCKTLEA 1045
H +HS EGP Q GC++ E+
Sbjct: 181 HSPQSSLSDVSEVSSLEHSQEGPVQNGCRSPES 213
>ref|XP_002688938.1| PREDICTED: nuclear factor, interleukin 3, regulated-like [Bos
taurus].
Length = 302
Score = 109 bits (272), Expect = 5e-24
Identities = 54/86 (62%), Positives = 67/86 (77%)
Frame = +2
Query: 572 KSSACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATL 751
+ A RR+REF+P+EKKD +YWEKRRKNNEAAKRSREKRRLND LE +L AL EENA L
Sbjct: 42 RGPAVRRQREFMPEEKKDTVYWEKRRKNNEAAKRSREKRRLNDAALEGRLAALLEENALL 101
Query: 752 KAELLSLKLKFGLISSTAYAQEIQKL 829
+AEL +LK +FGL+ +T + + L
Sbjct: 102 RAELRALKHRFGLLPATGGTRTLPTL 127
>ref|XP_002704846.1| PREDICTED: nuclear factor, interleukin 3, regulated-like [Bos
taurus].
Length = 302
Score = 109 bits (272), Expect = 5e-24
Identities = 54/86 (62%), Positives = 67/86 (77%)
Frame = +2
Query: 572 KSSACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATL 751
+ A RR+REF+P+EKKD +YWEKRRKNNEAAKRSREKRRLND LE +L AL EENA L
Sbjct: 42 RGPAVRRQREFMPEEKKDTVYWEKRRKNNEAAKRSREKRRLNDAALEGRLAALLEENALL 101
Query: 752 KAELLSLKLKFGLISSTAYAQEIQKL 829
+AEL +LK +FGL+ +T + + L
Sbjct: 102 RAELRALKHRFGLLPATGGTRTLPTL 127
>ref|NP_001179366.1| hepatic leukemia factor [Bos taurus].
Length = 295
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 213 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 272
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 273 DLRKELG 279
>ref|XP_002695596.1| PREDICTED: hepatic leukemia factor-like [Bos taurus].
Length = 295
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 213 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 272
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 273 DLRKELG 279
>ref|NP_001032522.1| D site-binding protein [Bos taurus].
Length = 325
Score = 58.9 bits (141), Expect = 8e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +2
Query: 605 IPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 775
+P+E+KD YW +R KNNEAAKRSR+ RRL + + + L +ENA L+ E+++++
Sbjct: 249 VPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVR 305
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,837,118
Number of extensions: 975049
Number of successful extensions: 3381
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3373
Number of HSP's successfully gapped: 6
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003672
(1097 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533548.2| PREDICTED: similar to nuclear factor, interleuk... 296 2e-80
Alignment gi|XP_542130.2| PREDICTED: similar to nuclear factor, interleuk... 107 2e-23
Alignment gi|XP_858494.1| PREDICTED: similar to thyrotrophic embryonic fa... 64 3e-10
Alignment gi|XP_849323.1| PREDICTED: similar to thyrotroph embryonic fact... 64 3e-10
Alignment gi|XP_866584.1| PREDICTED: similar to hepatic leukemia factor i... 62 1e-09
Alignment gi|XP_866570.1| PREDICTED: similar to hepatic leukemia factor i... 62 1e-09
Alignment gi|XP_866554.1| PREDICTED: similar to hepatic leukemia factor i... 62 1e-09
Alignment gi|XP_866540.1| PREDICTED: similar to hepatic leukemia factor i... 62 1e-09
Alignment gi|XP_866525.1| PREDICTED: similar to hepatic leukemia factor i... 62 1e-09
Alignment gi|XP_866510.1| PREDICTED: similar to hepatic leukemia factor i... 62 1e-09
>ref|XP_533548.2| PREDICTED: similar to nuclear factor, interleukin 3 regulated [Canis
familiaris].
Length = 462
Score = 296 bits (759), Expect = 2e-80
Identities = 157/212 (74%), Positives = 169/212 (79%)
Frame = +2
Query: 407 MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVAXXXXXXXXXXXXXXSVGKNKSSAC 586
MQLRKMQ+IKKEQASLDAGS +DKMMVLN L+EV+ SVGK+KSSAC
Sbjct: 1 MQLRKMQTIKKEQASLDAGSGVDKMMVLNPTLTEVSEDLTAGEELLLNEGSVGKSKSSAC 60
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL
Sbjct: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
Query: 767 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK 946
SLKLKFGLISSTAY QEIQKLS+STAVYFQDYQ SK++ S FVDE EPSMV S CISVIK
Sbjct: 121 SLKLKFGLISSTAYTQEIQKLSHSTAVYFQDYQASKASASPFVDEHEPSMVTSGCISVIK 180
Query: 947 HXXXXXXXXXXXXXXXKHSHEGPAQGGCKTLE 1042
H +HS +G A+GGC + E
Sbjct: 181 HSPQASLSDVSEVSSLEHSQDGAARGGCGSPE 212
>ref|XP_542130.2| PREDICTED: similar to nuclear factor, interleukin 3 regulated
[Canis familiaris].
Length = 172
Score = 107 bits (268), Expect = 2e-23
Identities = 52/80 (65%), Positives = 64/80 (80%)
Frame = +2
Query: 566 KNKSSACRRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENA 745
+ + RR+REF+P+EKKD +YWEKRRKNNEAAKRSREKRRLND LE KL +L EENA
Sbjct: 79 RGRGPTVRRQREFMPEEKKDTVYWEKRRKNNEAAKRSREKRRLNDAALEGKLASLLEENA 138
Query: 746 TLKAELLSLKLKFGLISSTA 805
L+AEL +L+ +FGL+ S A
Sbjct: 139 LLRAELWALRHRFGLLPSAA 158
>ref|XP_858494.1| PREDICTED: similar to thyrotrophic embryonic factor isoform 2
[Canis familiaris].
Length = 303
Score = 63.9 bits (154), Expect = 3e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ K+ F+PDE+KD YW +R+KNN AAKRSR+ RRL + + + L +EN L+ E+
Sbjct: 221 KAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 280
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 281 ELRKEVG 287
>ref|XP_849323.1| PREDICTED: similar to thyrotroph embryonic factor isoform 2 isoform
1 [Canis familiaris].
Length = 285
Score = 63.9 bits (154), Expect = 3e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ K+ F+PDE+KD YW +R+KNN AAKRSR+ RRL + + + L +EN L+ E+
Sbjct: 203 KAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 262
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 263 ELRKEVG 269
>ref|XP_866584.1| PREDICTED: similar to hepatic leukemia factor isoform 7 [Canis
familiaris].
Length = 289
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 207 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 266
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 267 DLRKELG 273
>ref|XP_866570.1| PREDICTED: similar to hepatic leukemia factor isoform 6 [Canis
familiaris].
Length = 290
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 208 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 267
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 268 DLRKELG 274
>ref|XP_866554.1| PREDICTED: similar to hepatic leukemia factor isoform 5 [Canis
familiaris].
Length = 302
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 220 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 279
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 280 DLRKELG 286
>ref|XP_866540.1| PREDICTED: similar to hepatic leukemia factor isoform 4 [Canis
familiaris].
Length = 292
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 210 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 269
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 270 DLRKELG 276
>ref|XP_866525.1| PREDICTED: similar to hepatic leukemia factor isoform 3 [Canis
familiaris].
Length = 305
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 223 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 282
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 283 DLRKELG 289
>ref|XP_866510.1| PREDICTED: similar to hepatic leukemia factor isoform 2 [Canis
familiaris].
Length = 302
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 220 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 279
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 280 DLRKELG 286
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,144,167
Number of extensions: 954636
Number of successful extensions: 3567
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3546
Number of HSP's successfully gapped: 15
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003672
(1097 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005375.2| nuclear factor interleukin-3-regulated protein ... 307 2e-86
Alignment gi|NP_003207.1| thyrotroph embryonic factor isoform 1 [Homo sap... 64 2e-10
Alignment gi|NP_001138870.1| thyrotroph embryonic factor isoform 2 [Homo ... 64 2e-10
Alignment gi|NP_002117.1| hepatic leukemia factor [Homo sapiens]. 62 1e-09
Alignment gi|NP_001343.2| D site-binding protein [Homo sapiens]. 59 8e-09
>ref|NP_005375.2| nuclear factor interleukin-3-regulated protein [Homo sapiens].
Length = 462
Score = 307 bits (786), Expect(2) = 2e-86
Identities = 162/212 (76%), Positives = 174/212 (82%)
Frame = +2
Query: 407 MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVAXXXXXXXXXXXXXXSVGKNKSSAC 586
MQLRKMQ++KKEQASLDA S++DKMMVLNSAL+EV+ SVGKNKSSAC
Sbjct: 1 MQLRKMQTVKKEQASLDASSNVDKMMVLNSALTEVSEDSTTGEELLLSEGSVGKNKSSAC 60
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL
Sbjct: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
Query: 767 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK 946
SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKS VS+FVDE EPSMV+SSCISVIK
Sbjct: 121 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSNVSSFVDEHEPSMVSSSCISVIK 180
Query: 947 HXXXXXXXXXXXXXXXKHSHEGPAQGGCKTLE 1042
H +H+ E QG C++ E
Sbjct: 181 HSPQSSLSDVSEVSSVEHTQESSVQGSCRSPE 212
Score = 31.6 bits (70), Expect(2) = 2e-86
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +1
Query: 1030 QNP*SKFQVIKQEPMKIVNYAR 1095
++P +KFQ+IKQEPM++ +Y R
Sbjct: 209 RSPENKFQIIKQEPMELESYTR 230
>ref|NP_003207.1| thyrotroph embryonic factor isoform 1 [Homo sapiens].
Length = 303
Score = 63.9 bits (154), Expect = 2e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ K+ F+PDE+KD YW +R+KNN AAKRSR+ RRL + + + L +EN L+ E+
Sbjct: 221 KAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 280
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 281 ELRKEVG 287
>ref|NP_001138870.1| thyrotroph embryonic factor isoform 2 [Homo sapiens].
Length = 273
Score = 63.9 bits (154), Expect = 2e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ K+ F+PDE+KD YW +R+KNN AAKRSR+ RRL + + + L +EN L+ E+
Sbjct: 191 KAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 250
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 251 ELRKEVG 257
>ref|NP_002117.1| hepatic leukemia factor [Homo sapiens].
Length = 295
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 213 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 272
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 273 DLRKELG 279
>ref|NP_001343.2| D site-binding protein [Homo sapiens].
Length = 325
Score = 58.9 bits (141), Expect = 8e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +2
Query: 605 IPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 775
+P+E+KD YW +R KNNEAAKRSR+ RRL + + + L +ENA L+ E+++++
Sbjct: 249 VPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVR 305
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,360,509
Number of extensions: 929672
Number of successful extensions: 3360
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3345
Number of HSP's successfully gapped: 6
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003672
(1097 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059069.1| nuclear factor interleukin-3-regulated protein ... 303 2e-82
Alignment gi|NP_059072.1| thyrotroph embryonic factor isoform 1 [Mus musc... 64 2e-10
Alignment gi|NP_705617.2| thyrotroph embryonic factor isoform 2 [Mus musc... 64 2e-10
Alignment gi|NP_766151.1| hepatic leukemia factor [Mus musculus]. 62 1e-09
Alignment gi|NP_058670.2| D site-binding protein [Mus musculus]. 59 7e-09
>ref|NP_059069.1| nuclear factor interleukin-3-regulated protein [Mus musculus].
Length = 462
Score = 303 bits (775), Expect = 2e-82
Identities = 160/212 (75%), Positives = 172/212 (81%)
Frame = +2
Query: 407 MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVAXXXXXXXXXXXXXXSVGKNKSSAC 586
MQLRKMQ+IKKE A LD SS DKM++LNSAL+EVA S+GKNKSSAC
Sbjct: 1 MQLRKMQTIKKEPAPLDPTSSSDKMLLLNSALAEVAEDLASGEDLLLNEGSMGKNKSSAC 60
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL
Sbjct: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
Query: 767 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK 946
SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSK+ VS+FVDE EP+MVA SCISVIK
Sbjct: 121 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKAAVSSFVDEHEPAMVAGSCISVIK 180
Query: 947 HXXXXXXXXXXXXXXXKHSHEGPAQGGCKTLE 1042
H +H+ E PAQGGC++ E
Sbjct: 181 HSPQSSLSDVSEVSSVEHTQESPAQGGCRSPE 212
>ref|NP_059072.1| thyrotroph embryonic factor isoform 1 [Mus musculus].
Length = 301
Score = 63.9 bits (154), Expect = 2e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ K+ F+PDE+KD YW +R+KNN AAKRSR+ RRL + + + L +EN L+ E+
Sbjct: 219 KAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 278
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 279 ELRKEVG 285
>ref|NP_705617.2| thyrotroph embryonic factor isoform 2 [Mus musculus].
Length = 285
Score = 63.9 bits (154), Expect = 2e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ K+ F+PDE+KD YW +R+KNN AAKRSR+ RRL + + + L +EN L+ E+
Sbjct: 203 KAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 262
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 263 ELRKEVG 269
>ref|NP_766151.1| hepatic leukemia factor [Mus musculus].
Length = 295
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 213 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 272
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 273 DLRKELG 279
>ref|NP_058670.2| D site-binding protein [Mus musculus].
Length = 325
Score = 58.9 bits (141), Expect = 7e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +2
Query: 605 IPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 775
+P+E+KD YW +R KNNEAAKRSR+ RRL + + + L +ENA L+ E+++++
Sbjct: 249 VPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVR 305
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,696,849
Number of extensions: 786499
Number of successful extensions: 2693
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2686
Number of HSP's successfully gapped: 5
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003672
(1097 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928905.1| PREDICTED: nuclear factor interleukin-3-regu... 337 5e-93
Alignment gi|XP_003359068.1| PREDICTED: nuclear factor interleukin-3-regu... 337 5e-93
Alignment gi|XP_003131662.2| PREDICTED: hepatic leukemia factor-like [Sus... 62 7e-10
Alignment gi|XP_003127334.2| PREDICTED: D site-binding protein-like [Sus ... 59 5e-09
Alignment gi|XP_003359069.1| PREDICTED: hypothetical protein LOC100627291... 55 5e-08
>ref|XP_001928905.1| PREDICTED: nuclear factor interleukin-3-regulated protein isoform 1
[Sus scrofa].
Length = 462
Score = 337 bits (865), Expect = 5e-93
Identities = 179/213 (84%), Positives = 183/213 (85%)
Frame = +2
Query: 407 MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVAXXXXXXXXXXXXXXSVGKNKSSAC 586
MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVA SVGKNKSSAC
Sbjct: 1 MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVAEDLTTGEELLLNEGSVGKNKSSAC 60
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL
Sbjct: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
Query: 767 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK 946
SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK
Sbjct: 121 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK 180
Query: 947 HXXXXXXXXXXXXXXXKHSHEGPAQGGCKTLEA 1045
H +HSHEGPAQGGC++ E+
Sbjct: 181 HSPQSSLSDVSEVSSLEHSHEGPAQGGCRSPES 213
>ref|XP_003359068.1| PREDICTED: nuclear factor interleukin-3-regulated protein isoform 2
[Sus scrofa].
Length = 462
Score = 337 bits (865), Expect = 5e-93
Identities = 179/213 (84%), Positives = 183/213 (85%)
Frame = +2
Query: 407 MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVAXXXXXXXXXXXXXXSVGKNKSSAC 586
MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVA SVGKNKSSAC
Sbjct: 1 MQLRKMQSIKKEQASLDAGSSMDKMMVLNSALSEVAEDLTTGEELLLNEGSVGKNKSSAC 60
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL
Sbjct: 61 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 120
Query: 767 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK 946
SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK
Sbjct: 121 SLKLKFGLISSTAYAQEIQKLSNSTAVYFQDYQTSKSTVSAFVDEPEPSMVASSCISVIK 180
Query: 947 HXXXXXXXXXXXXXXXKHSHEGPAQGGCKTLEA 1045
H +HSHEGPAQGGC++ E+
Sbjct: 181 HSPQSSLSDVSEVSSLEHSHEGPAQGGCRSPES 213
>ref|XP_003131662.2| PREDICTED: hepatic leukemia factor-like [Sus scrofa].
Length = 295
Score = 61.6 bits (148), Expect = 7e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 587 RRKREFIPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELL 766
+ ++ FIPD+ KD YW +RRKNN AAKRSR+ RRL + + + L +EN+ L+ E+
Sbjct: 213 KARKVFIPDDLKDDKYWARRRKNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVA 272
Query: 767 SLKLKFG 787
L+ + G
Sbjct: 273 DLRKELG 279
>ref|XP_003127334.2| PREDICTED: D site-binding protein-like [Sus scrofa].
Length = 325
Score = 58.9 bits (141), Expect = 5e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +2
Query: 605 IPDEKKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLK 775
+P+E+KD YW +R KNNEAAKRSR+ RRL + + + L +ENA L+ E+++++
Sbjct: 249 VPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVR 305
>ref|XP_003359069.1| PREDICTED: hypothetical protein LOC100627291 [Sus scrofa].
Length = 173
Score = 55.5 bits (132), Expect = 5e-08
Identities = 27/29 (93%), Positives = 27/29 (93%)
Frame = +1
Query: 205 RNTVIISCVAKDPIYLRSARGAGEISSGR 291
R VIISCVAKDPIYLRSARGAGEISSGR
Sbjct: 145 RQQVIISCVAKDPIYLRSARGAGEISSGR 173
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,212,932
Number of extensions: 702183
Number of successful extensions: 2203
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2194
Number of HSP's successfully gapped: 5
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003672
(1097 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1655 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1655 bits (835), Expect = 0.0
Identities = 857/863 (99%), Gaps = 1/863 (0%)
Strand = Plus / Minus
Query: 213 ggtgatcatctcatgtgttgcaaaagaccccatctacctccgttcagcaagaggagctgg 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266744 ggtgatcatctcatgtgttgcaaaagaccccatctacctccgttcagcaagaggagctgg 3266685
Query: 273 cgagatttcttctgggcgatagcataaaaggaagaatattgatggattttaaaccacagt 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266684 cgagatttcttctgggcgatagcataaaaggaagaatattgatggattttaaaccacagt 3266625
Query: 333 tcttaaagcatctgcgaatcctggggcaataatttgttctcctgcaccgcatatagaggc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266624 tcttaaagcatctgcgaatcctggggcaataatttgttctcctgcaccgcatatagaggc 3266565
Query: 393 taagtttgtttctgatgcagctgagaaaaatgcagagcatcaagaaggagcaggcgtctc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266564 taagtttgtttctgatgcagctgagaaaaatgcagagcatcaagaaggagcaggcgtctc 3266505
Query: 453 ttgatgccgggagcagcatggacaagatgatggtgcttaattcggccctaagcgaagttg 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266504 ttgatgccgggagcagcatggacaagatgatggtgcttaattcggccctaagcgaagttg 3266445
Query: 513 ccgaagacttgacgacgggcgaagagctccttctcaacgaaggaagtgtgggcaaaaaca 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266444 ccgaagacttgacgacgggcgaagagctccttctcaacgaaggaagtgtgggcaaaaaca 3266385
Query: 573 aatcttcagcgtgtcggaggaaacgggaattcattcccgacgagaagaaagatgccatgt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266384 aatcttcagcgtgtcggaggaaacgggaattcattcccgacgagaagaaagatgccatgt 3266325
Query: 633 attgggaaaagaggcggaaaaataatgaagccgccaagaggtcccgtgagaagcgtcgac 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266324 attgggaaaagaggcggaaaaataatgaagccgccaagaggtcccgtgagaagcgtcgac 3266265
Query: 693 tgaatgacctggttttagagaacaaactcattgccctgggggaagaaaatgccactttaa 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266264 tgaatgacctggttttagagaacaaactcattgccctgggggaagaaaatgccactttaa 3266205
Query: 753 aagctgaactgctttccctaaaattaaagtttggtttaattagctccacagcctacgccc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266204 aagctgaactgctttccctaaaattaaagtttggtttaattagctccacagcctacgccc 3266145
Query: 813 aggagattcagaaactcagtaattcgacagccgtgtacttccaagactaccagacttcca 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266144 aggagattcagaaactcagtaattcgacagccgtgtacttccaagactaccagacttcca 3266085
Query: 873 aatccaccgtgagcgcctttgtggatgagcccgagccctccatggtggccagcagctgca 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266084 aatccaccgtgagcgcctttgtggatgagcccgagccctccatggtggccagcagctgca 3266025
Query: 933 tctctgtcatcaaacactctccccagagctctctgtctgatgtttccgaagtgtcctcgc 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266024 tctctgtcatcaaacactctccccagagctctctgtctgatgtttccgaagtgtcctcgc 3265965
Query: 993 taaaacattcgcacgagggccctgcgcaaggtggctgca-aaacccttgaagcaagttcc 1051
|| ||||||||||||||||||||||||| |||||||||| || |||| |||||||||||
Sbjct: 3265964 tagaacattcgcacgagggccctgcgcagggtggctgcagaagccctgaaagcaagttcc 3265905
Query: 1052 aggtcatcaagcaagagcccatg 1074
|||||||||||||||||||||||
Sbjct: 3265904 aggtcatcaagcaagagcccatg 3265882
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 90 tcgccgctcctgccgtcccggaggcctggccggacccggatccctgagcgcctccagctc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3279085 tcgccgctcctgccgtcccggaggcctggccggacccggatccctgagcgcctccagctc 3279026
Query: 150 ggctcccgactccctgctctttctccctgtcgccccggctcgccggcccgagagcaggaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3279025 ggctcccgactccctgctctttctccctgtcgccccggctcgccggcccgagagcaggaa 3278966
Query: 210 cacggt 215
||||||
Sbjct: 3278965 cacggt 3278960
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 90 tcgccgctcctgccgtcccggaggcctggccggacccggatccctgagcgcctccagctc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3402048 tcgccgctcctgccgtcccggaggcctggccggacccggatccctgagcgcctccagctc 3401989
Query: 150 ggctcccgactccctgctctttctccctgtcgccccggctcgccggcccgagagcaggaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3401988 ggctcccgactccctgctctttctccctgtcgccccggctcgccggcccgagagcaggaa 3401929
Query: 210 cacggt 215
||||||
Sbjct: 3401928 cacggt 3401923
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,270,909
Number of extensions: 890
Number of successful extensions: 890
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 3
Length of query: 1097
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1076
Effective length of database: 2,808,413,156
Effective search space: 3021852555856
Effective search space used: 3021852555856
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)