Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003681
(1300 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002699331.1| PREDICTED: fatty acid desaturase 1 [Bos taur... 597 e-170
Alignment gi|XP_612398.4| PREDICTED: fatty acid desaturase 1 [Bos taurus]. 597 e-170
Alignment gi|NP_001076913.1| fatty acid desaturase 2 [Bos taurus]. 441 e-124
Alignment gi|NP_001077160.1| fatty acid desaturase 3 [Bos taurus]. 379 e-105
Alignment gi|XP_002693779.1| PREDICTED: fatty acid desaturase 2-like [Bos... 358 8e-99
Alignment gi|XP_871845.3| PREDICTED: fatty acid desaturase 2-like [Bos ta... 357 1e-98
Alignment gi|XP_002693751.1| PREDICTED: rCG26407-like [Bos taurus]. 355 5e-98
Alignment gi|XP_599338.4| PREDICTED: rCG26407-like [Bos taurus]. 355 5e-98
>ref|XP_002699331.1| PREDICTED: fatty acid desaturase 1 [Bos taurus].
Length = 440
Score = 597 bits (1538), Expect = e-170
Identities = 271/311 (87%), Positives = 283/311 (90%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
++LLHILLLDV AWL LWLFGTS VPF+LC+VLLS VQAQAGWLQHD GHLSVF TS WN
Sbjct: 130 LYLLHILLLDVAAWLTLWLFGTSLVPFLLCSVLLSIVQAQAGWLQHDFGHLSVFGTSKWN 189
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
HL+HHFVIGHLKGAPASWWNHLHFQHHAKPNCF KDPDINMHPFFFALGK+LSVELGKQK
Sbjct: 190 HLLHHFVIGHLKGAPASWWNHLHFQHHAKPNCFRKDPDINMHPFFFALGKVLSVELGKQK 249
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI RKKWVDLAWM +FYVRIFLTYVP
Sbjct: 250 KKYMPYNHQHKYFFLIGPPALLPVYFQWYIFYFVIHRKKWVDLAWMITFYVRIFLTYVPL 309
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
VRFLESNWFVWVTQMNHIPMHIDHDRN+DW S Q++ATCNVHKSAFND
Sbjct: 310 LGLKGFLGLVFMVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQATCNVHKSAFND 369
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGI+YQSKPL SAFADIVHSLKES
Sbjct: 370 WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIKYQSKPLFSAFADIVHSLKES 429
Query: 903 GQLWLDAYLHQ 935
GQLWLDAYLHQ
Sbjct: 430 GQLWLDAYLHQ 440
>ref|XP_612398.4| PREDICTED: fatty acid desaturase 1 [Bos taurus].
Length = 440
Score = 597 bits (1538), Expect = e-170
Identities = 271/311 (87%), Positives = 283/311 (90%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
++LLHILLLDV AWL LWLFGTS VPF+LC+VLLS VQAQAGWLQHD GHLSVF TS WN
Sbjct: 130 LYLLHILLLDVAAWLTLWLFGTSLVPFLLCSVLLSIVQAQAGWLQHDFGHLSVFGTSKWN 189
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
HL+HHFVIGHLKGAPASWWNHLHFQHHAKPNCF KDPDINMHPFFFALGK+LSVELGKQK
Sbjct: 190 HLLHHFVIGHLKGAPASWWNHLHFQHHAKPNCFRKDPDINMHPFFFALGKVLSVELGKQK 249
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI RKKWVDLAWM +FYVRIFLTYVP
Sbjct: 250 KKYMPYNHQHKYFFLIGPPALLPVYFQWYIFYFVIHRKKWVDLAWMITFYVRIFLTYVPL 309
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
VRFLESNWFVWVTQMNHIPMHIDHDRN+DW S Q++ATCNVHKSAFND
Sbjct: 310 LGLKGFLGLVFMVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQATCNVHKSAFND 369
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGI+YQSKPL SAFADIVHSLKES
Sbjct: 370 WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIKYQSKPLFSAFADIVHSLKES 429
Query: 903 GQLWLDAYLHQ 935
GQLWLDAYLHQ
Sbjct: 430 GQLWLDAYLHQ 440
>ref|NP_001076913.1| fatty acid desaturase 2 [Bos taurus].
Length = 444
Score = 441 bits (1133), Expect = e-124
Identities = 198/311 (63%), Positives = 236/311 (75%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
+HL HI+ ++ AW L+ FG ++P ++ A +L+T QAQAGWLQHD GHLSV+ S WN
Sbjct: 135 LHLAHIIAMESIAWFTLFYFGNGWIPTIITAFVLATSQAQAGWLQHDYGHLSVYKKSMWN 194
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
H+VH FVIGHLKGA A+WWNH HFQHHAKPN F KDPD+NM F LG+ +E GK+K
Sbjct: 195 HIVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNML-HVFVLGEWQPIEYGKKK 253
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KY+PY+HQH+YFFLIGPP L+P YFQ+ I +I RK W DLAW S+Y R F+TY+P
Sbjct: 254 LKYLPYNHQHEYFFLIGPPLLIPLYFQYQIIMTMIVRKYWADLAWAISYYTRFFITYIPF 313
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
+RFLES+WFVWVTQMNHI M ID + DWFS Q+ ATCNV +S FND
Sbjct: 314 YGVLGSILFLNFIRFLESHWFVWVTQMNHIVMEIDREPYRDWFSSQLAATCNVEQSFFND 373
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WFSGHLNFQIEHHLFP MPRHN HK+APLV+SLCAKHGIEYQ KPLL A DI+ SL++S
Sbjct: 374 WFSGHLNFQIEHHLFPTMPRHNLHKIAPLVRSLCAKHGIEYQEKPLLRALQDIIGSLRKS 433
Query: 903 GQLWLDAYLHQ 935
GQLWLDAYLH+
Sbjct: 434 GQLWLDAYLHK 444
>ref|NP_001077160.1| fatty acid desaturase 3 [Bos taurus].
Length = 443
Score = 379 bits (973), Expect = e-105
Identities = 173/307 (56%), Positives = 218/307 (71%)
Frame = +3
Query: 15 HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
HIL ++V AWL++++ G +VP L A++L+ QAQ+ LQHDLGH S+F S WNHL
Sbjct: 139 HILAMEVLAWLMIYMLGPGWVPSTLAALILAISQAQSWCLQHDLGHTSIFRNSRWNHLAQ 198
Query: 195 HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
FV+G LKG A WWN HFQHHAKPN F KDPD+ + P F LG+ SVE GK+K++Y+
Sbjct: 199 QFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SVEYGKKKRRYL 256
Query: 375 PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
PY+HQH YFFLIGPP L F+ +++ +W+DL W SFY R L+Y+P
Sbjct: 257 PYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWMDLLWAASFYARFLLSYIPFYGIP 316
Query: 555 XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
VR LES+WFVW+TQMNHIP I H+++ DW S Q+ ATCNV S F DWFSG
Sbjct: 317 GALLLFVAVRVLESHWFVWITQMNHIPREIGHEKHRDWASSQLAATCNVEPSLFIDWFSG 376
Query: 735 HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
HLNFQIEHHLFP MPRHNY +VAPLV++LCAKHG+ Y+ KP L+A DI+ SLK+SG +W
Sbjct: 377 HLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLKKSGNVW 436
Query: 915 LDAYLHQ 935
L+AYLHQ
Sbjct: 437 LEAYLHQ 443
>ref|XP_002693779.1| PREDICTED: fatty acid desaturase 2-like [Bos taurus].
Length = 485
Score = 358 bits (918), Expect = 8e-99
Identities = 158/308 (51%), Positives = 211/308 (68%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
+HL +L+L+ AW+I+W FG+ ++ + + LL+ QAQ +LQHD GHL +F WN
Sbjct: 173 LHLAQVLILEALAWVIVWHFGSGWLITIFISFLLTVAQAQGSFLQHDTGHLCIFKKPKWN 232
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
L+ FV+ HLKG A WWN+ HFQHH KPN + KDPDI++ PFF +G + V+ GK K
Sbjct: 233 RLMQKFVMSHLKGISAKWWNNRHFQHHVKPNIYSKDPDIDVGPFF-VIGDLQPVKYGKNK 291
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
K++ Y+ QH YF + P L+P YF + +R+ W D+AW+++FY+R F+T+ P
Sbjct: 292 IKFINYEKQHLYFHVSWVPFLIPVYFNLDSILAMYRRRDWEDIAWVSTFYIRHFITFGPF 351
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
V+ LES W ++TQMNHIPM I + N DWFS QV TCNV +S FND
Sbjct: 352 YGIFGTMVLIYLVKLLESLWVAYITQMNHIPMKISTEENQDWFSSQVLTTCNVEQSFFND 411
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG+ Y +KP+L AF D++ +LK+S
Sbjct: 412 WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLPYVNKPILKAFGDVIRALKKS 471
Query: 903 GQLWLDAY 926
G LW +AY
Sbjct: 472 GALWKEAY 479
>ref|XP_871845.3| PREDICTED: fatty acid desaturase 2-like [Bos taurus].
Length = 485
Score = 357 bits (916), Expect = 1e-98
Identities = 158/308 (51%), Positives = 211/308 (68%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
+HL +L+L+ AW+I+W FG+ ++ + + LL+ QAQ +LQHD GHL +F WN
Sbjct: 173 LHLAQVLILEALAWVIVWHFGSGWLITIFISFLLTVAQAQGSFLQHDTGHLCIFKKPKWN 232
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
L+ FV+ HLKG A WWN+ HFQHH KPN + KDPDI++ PFF +G + V+ GK K
Sbjct: 233 RLMQKFVMSHLKGISAKWWNNRHFQHHVKPNIYSKDPDIDVGPFF-VIGDLQPVKYGKNK 291
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
K++ Y+ QH YF + P L+P YF + +R+ W D+AW+++FY+R F+T+ P
Sbjct: 292 IKFINYEKQHLYFHVSWVPFLIPVYFNLDSILAMYRRRDWEDIAWVSTFYIRHFITFGPF 351
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
V+ LES W +VTQMNHIPM + + N DWFS QV TCNV +S FND
Sbjct: 352 YGIFGTMVLIYLVKLLESLWVAYVTQMNHIPMKMSTEENQDWFSSQVLTTCNVEQSFFND 411
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG+ Y +KP+L AF D++ +LK+S
Sbjct: 412 WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLPYVNKPILKAFGDVIRALKKS 471
Query: 903 GQLWLDAY 926
G LW +AY
Sbjct: 472 GALWKEAY 479
>ref|XP_002693751.1| PREDICTED: rCG26407-like [Bos taurus].
Length = 485
Score = 355 bits (911), Expect = 5e-98
Identities = 161/308 (52%), Positives = 210/308 (68%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
+HL +L+L+ AW+I+W FG+ ++ + LL+ QAQ +LQHD+GHLSVF S WN
Sbjct: 173 LHLAQVLILEALAWVIVWHFGSGWLITIFIYFLLTVAQAQDSFLQHDMGHLSVFKKSKWN 232
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
L+ +FVIGHLKG A WWN+ H QHH K N + KDPD+ PFF +G + V+ GK K
Sbjct: 233 RLMQNFVIGHLKGFSAKWWNNQHSQHHVKTNIYPKDPDVVFGPFF-VVGDLQPVKYGKNK 291
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KY+ Y+ QH YF +G L+P Y + +R W D+AW+++FY+R F+T+ P
Sbjct: 292 IKYIDYEKQHLYFCTVGAALLMPVYLNLDSIRAMYRRGYWEDIAWVSTFYIRYFITFGPF 351
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
V+ LES W +VTQM+HIPM + + N DWFS QV ATCNV +S FND
Sbjct: 352 YGIFGTLVLIYLVKLLESLWVAYVTQMSHIPMKMSTEENQDWFSSQVLATCNVEQSFFND 411
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG+ Y +KP+L AF DI+ +LK+S
Sbjct: 412 WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLPYVNKPILKAFGDIIRALKKS 471
Query: 903 GQLWLDAY 926
LW+DAY
Sbjct: 472 AALWMDAY 479
>ref|XP_599338.4| PREDICTED: rCG26407-like [Bos taurus].
Length = 485
Score = 355 bits (911), Expect = 5e-98
Identities = 161/308 (52%), Positives = 210/308 (68%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
+HL +L+L+ AW+I+W FG+ ++ + LL+ QAQ +LQHD+GHLSVF S WN
Sbjct: 173 LHLAQVLILEALAWVIVWHFGSGWLITIFIYFLLTVAQAQDSFLQHDMGHLSVFKKSKWN 232
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
L+ +FVIGHLKG A WWN+ H QHH K N + KDPD+ PFF +G + V+ GK K
Sbjct: 233 RLMQNFVIGHLKGFSAKWWNNQHSQHHVKTNIYPKDPDVVFGPFF-VVGDLQPVKYGKNK 291
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KY+ Y+ QH YF +G L+P Y + +R W D+AW+++FY+R F+T+ P
Sbjct: 292 IKYIDYEKQHLYFCTVGAALLMPVYLNLDSIRAMYRRGYWEDIAWVSTFYIRYFITFGPF 351
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
V+ LES W +VTQM+HIPM + + N DWFS QV ATCNV +S FND
Sbjct: 352 YGIFGTLVLIYLVKLLESLWVAYVTQMSHIPMKMSTEENQDWFSSQVLATCNVEQSFFND 411
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG+ Y +KP+L AF DI+ +LK+S
Sbjct: 412 WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLPYVNKPILKAFGDIIRALKKS 471
Query: 903 GQLWLDAY 926
LW+DAY
Sbjct: 472 AALWMDAY 479
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,005,605
Number of extensions: 1685144
Number of successful extensions: 5651
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5634
Number of HSP's successfully gapped: 8
Length of query: 433
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,207,134
Effective search space: 4659939952
Effective search space used: 4659939952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003681
(1300 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540914.2| PREDICTED: similar to fatty acid desaturase 1 i... 591 e-169
Alignment gi|XP_867837.1| PREDICTED: similar to fatty acid desaturase 1 i... 557 e-159
Alignment gi|XP_540913.2| PREDICTED: similar to fatty acid desaturase 2 [... 437 e-123
Alignment gi|XP_533270.2| PREDICTED: similar to fatty acid desaturase 3 [... 387 e-107
Alignment gi|XP_855112.1| PREDICTED: similar to fatty acid desaturase 1 [... 288 6e-78
>ref|XP_540914.2| PREDICTED: similar to fatty acid desaturase 1 isoform 1 [Canis
familiaris].
Length = 442
Score = 591 bits (1523), Expect = e-169
Identities = 269/311 (86%), Positives = 283/311 (90%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
++LLHILLLDV AWL LW FGTS VPF+LCAVLLSTVQ QAGWLQHD GHLSVFSTSTWN
Sbjct: 132 LYLLHILLLDVAAWLTLWFFGTSLVPFLLCAVLLSTVQTQAGWLQHDFGHLSVFSTSTWN 191
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
HL+HHFVIGHLKGAPASWWNHLHFQHHAKPNCF KDPDI+MHP FFALGKILSVELGKQK
Sbjct: 192 HLLHHFVIGHLKGAPASWWNHLHFQHHAKPNCFLKDPDISMHPSFFALGKILSVELGKQK 251
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI+RKKWVDLAWM +FY RIFLTYVP
Sbjct: 252 KKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMMTFYARIFLTYVPF 311
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
VRFLES WFVWVTQMNHIPMHID+DRN+DW S Q+RATCNVH+SAFND
Sbjct: 312 LGLKGVLGLFFMVRFLESIWFVWVTQMNHIPMHIDYDRNMDWVSTQLRATCNVHRSAFND 371
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADI++SLKES
Sbjct: 372 WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIYSLKES 431
Query: 903 GQLWLDAYLHQ 935
GQLWLDAYLHQ
Sbjct: 432 GQLWLDAYLHQ 442
>ref|XP_867837.1| PREDICTED: similar to fatty acid desaturase 1 isoform 2 [Canis
familiaris].
Length = 425
Score = 557 bits (1435), Expect = e-159
Identities = 253/294 (86%), Positives = 266/294 (90%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
++LLHILLLDV AWL LW FGTS VPF+LCAVLLSTVQ QAGWLQHD GHLSVFSTSTWN
Sbjct: 132 LYLLHILLLDVAAWLTLWFFGTSLVPFLLCAVLLSTVQTQAGWLQHDFGHLSVFSTSTWN 191
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
HL+HHFVIGHLKGAPASWWNHLHFQHHAKPNCF KDPDI+MHP FFALGKILSVELGKQK
Sbjct: 192 HLLHHFVIGHLKGAPASWWNHLHFQHHAKPNCFLKDPDISMHPSFFALGKILSVELGKQK 251
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI+RKKWVDLAWM +FY RIFLTYVP
Sbjct: 252 KKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMMTFYARIFLTYVPF 311
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
VRFLES WFVWVTQMNHIPMHID+DRN+DW S Q+RATCNVH+SAFND
Sbjct: 312 LGLKGVLGLFFMVRFLESIWFVWVTQMNHIPMHIDYDRNMDWVSTQLRATCNVHRSAFND 371
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIV 884
WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADI+
Sbjct: 372 WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADII 425
>ref|XP_540913.2| PREDICTED: similar to fatty acid desaturase 2 [Canis familiaris].
Length = 472
Score = 437 bits (1125), Expect = e-123
Identities = 197/309 (63%), Positives = 237/309 (76%)
Frame = +3
Query: 9 LLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHL 188
L HI++++ AW I++ FG ++ V+ A +L+T QAQAGWLQHD GHLSV+ S WNH+
Sbjct: 165 LAHIIVMESIAWFIIFYFGNGWISTVITAFVLATSQAQAGWLQHDYGHLSVYKKSMWNHV 224
Query: 189 VHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKK 368
VH F+IGHLKGA A+WWNH HFQHHAKPN F KDPD+NM F LG+ +E GK+K K
Sbjct: 225 VHKFIIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNML-HVFVLGEWQPIEYGKKKLK 283
Query: 369 YMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXX 548
Y+PY+HQH+YFFLIGPP L+P YFQ+ I +I R+ WVDLAW S+YVR F+TY+P
Sbjct: 284 YLPYNHQHEYFFLIGPPLLIPVYFQYQIIMTMIVRRDWVDLAWAMSYYVRFFITYIPFYG 343
Query: 549 XXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWF 728
+RFLES+WFVWVTQMNHI M ID + DWFS Q+ ATCNV +S FNDWF
Sbjct: 344 ILGALLFLNFIRFLESHWFVWVTQMNHIVMEIDREPYRDWFSSQLAATCNVEQSFFNDWF 403
Query: 729 SGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQ 908
SGHLNFQIEHHLFP MPRHN HKVAPLV+SLCAKHGI+YQ KPLL A DI+ SLK+SG+
Sbjct: 404 SGHLNFQIEHHLFPTMPRHNLHKVAPLVKSLCAKHGIKYQEKPLLRALQDIIRSLKKSGE 463
Query: 909 LWLDAYLHQ 935
LWLDAYLH+
Sbjct: 464 LWLDAYLHK 472
>ref|XP_533270.2| PREDICTED: similar to fatty acid desaturase 3 [Canis familiaris].
Length = 480
Score = 387 bits (994), Expect = e-107
Identities = 180/307 (58%), Positives = 220/307 (71%)
Frame = +3
Query: 15 HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
HIL ++V AWLI++LFG +VP +L A++L+T QAQ LQHDLGH SVF S WNH+
Sbjct: 176 HILAMEVLAWLIIYLFGPGWVPSILAALVLATSQAQCWCLQHDLGHTSVFRKSQWNHVAQ 235
Query: 195 HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
FV+G LKG A WWN HFQHHAKPN F KDPD+ + P F LG+ SVE GK+K++Y+
Sbjct: 236 QFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SVEYGKKKRRYL 293
Query: 375 PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
PY+HQH YFFLIGPP L F+ +++ +W DL W TSFY R FL YVP
Sbjct: 294 PYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCMRWTDLLWATSFYSRFFLCYVPFYGVP 353
Query: 555 XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
VR LES+WFVW+TQMNHIP I H+++ DW S Q+ ATCNV S F DWFSG
Sbjct: 354 GALLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSG 413
Query: 735 HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
HLNFQIEHHLFP MPRHNY +VAPLV++LCAKHG+ Y+ KP L+A DI+ SLK+SG +W
Sbjct: 414 HLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLNYEVKPFLTALVDIIGSLKKSGDVW 473
Query: 915 LDAYLHQ 935
L+AYLHQ
Sbjct: 474 LEAYLHQ 480
>ref|XP_855112.1| PREDICTED: similar to fatty acid desaturase 1 [Canis familiaris].
Length = 176
Score = 288 bits (738), Expect = 6e-78
Identities = 131/160 (81%), Positives = 140/160 (87%)
Frame = +3
Query: 408 IGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXXXXXXXXXXVRF 587
IGPPALLP YFQWYIFYFVI+RKKWVDLAWM +FY RIFLTYVP VRF
Sbjct: 17 IGPPALLPLYFQWYIFYFVIQRKKWVDLAWMMTFYARIFLTYVPFLGLKGVLGLFFMVRF 76
Query: 588 LESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSGHLNFQIEHHLF 767
LES WFVWVTQMNHIPMHID+DRN+DW S Q+RATCNVH+SAFNDWFSGHLNFQIEHHLF
Sbjct: 77 LESIWFVWVTQMNHIPMHIDYDRNMDWVSTQLRATCNVHRSAFNDWFSGHLNFQIEHHLF 136
Query: 768 PRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVH 887
P MPRHNY+KVAPLVQSLCAKHGIEYQSKPLLSAFADI++
Sbjct: 137 PTMPRHNYYKVAPLVQSLCAKHGIEYQSKPLLSAFADIIY 176
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,285,863
Number of extensions: 1731997
Number of successful extensions: 5671
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5657
Number of HSP's successfully gapped: 5
Length of query: 433
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 327
Effective length of database: 15,340,888
Effective search space: 5016470376
Effective search space used: 5016470376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003681
(1300 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037534.3| fatty acid desaturase 1 [Homo sapiens]. 598 e-171
Alignment gi|NP_004256.1| fatty acid desaturase 2 [Homo sapiens]. 437 e-122
Alignment gi|NP_068373.1| fatty acid desaturase 3 [Homo sapiens]. 380 e-105
>ref|NP_037534.3| fatty acid desaturase 1 [Homo sapiens].
Length = 501
Score = 598 bits (1542), Expect = e-171
Identities = 271/311 (87%), Positives = 285/311 (91%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
++LLHILLLD AWL LW+FGTSF+PF+LCAVLLS VQAQAGWLQHD GHLSVFSTS WN
Sbjct: 191 LYLLHILLLDGAAWLTLWVFGTSFLPFLLCAVLLSAVQAQAGWLQHDFGHLSVFSTSKWN 250
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
HL+HHFVIGHLKGAPASWWNH+HFQHHAKPNCF KDPDINMHPFFFALGKILSVELGKQK
Sbjct: 251 HLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPFFFALGKILSVELGKQK 310
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI+RKKWVDLAWM +FYVR FLTYVP
Sbjct: 311 KKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMITFYVRFFLTYVPL 370
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
VRFLESNWFVWVTQMNHIPMHIDHDRN+DW S Q++ATCNVHKSAFND
Sbjct: 371 LGLKAFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQATCNVHKSAFND 430
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADI+HSLKES
Sbjct: 431 WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLKES 490
Query: 903 GQLWLDAYLHQ 935
GQLWLDAYLHQ
Sbjct: 491 GQLWLDAYLHQ 501
>ref|NP_004256.1| fatty acid desaturase 2 [Homo sapiens].
Length = 444
Score = 437 bits (1123), Expect = e-122
Identities = 197/309 (63%), Positives = 234/309 (75%)
Frame = +3
Query: 9 LLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHL 188
L HI+ L+ AW ++ FG ++P ++ A +L+T QAQAGWLQHD GHLSV+ WNHL
Sbjct: 137 LAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHL 196
Query: 189 VHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKK 368
VH FVIGHLKGA A+WWNH HFQHHAKPN F KDPD+NM F LG+ +E GK+K K
Sbjct: 197 VHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNML-HVFVLGEWQPIEYGKKKLK 255
Query: 369 YMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXX 548
Y+PY+HQH+YFFLIGPP L+P YFQ+ I +I K WVDLAW S+Y+R F+TY+P
Sbjct: 256 YLPYNHQHEYFFLIGPPLLIPMYFQYQIIMTMIVHKNWVDLAWAVSYYIRFFITYIPFYG 315
Query: 549 XXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWF 728
+RFLES+WFVWVTQMNHI M ID + DWFS Q+ ATCNV +S FNDWF
Sbjct: 316 ILGALLFLNFIRFLESHWFVWVTQMNHIVMEIDQEAYRDWFSSQLTATCNVEQSFFNDWF 375
Query: 729 SGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQ 908
SGHLNFQIEHHLFP MPRHN HK+APLV+SLCAKHGIEYQ KPLL A DI+ SLK+SG+
Sbjct: 376 SGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLKKSGK 435
Query: 909 LWLDAYLHQ 935
LWLDAYLH+
Sbjct: 436 LWLDAYLHK 444
>ref|NP_068373.1| fatty acid desaturase 3 [Homo sapiens].
Length = 445
Score = 380 bits (977), Expect = e-105
Identities = 176/307 (57%), Positives = 217/307 (70%)
Frame = +3
Query: 15 HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
HIL ++V AWL+++L G +VP L A +L+ QAQ+ LQHDLGH S+F S WNH+
Sbjct: 141 HILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCLQHDLGHASIFKKSWWNHVAQ 200
Query: 195 HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
FV+G LKG A WWN HFQHHAKPN F KDPD+ + P F LG+ SVE GK+K++Y+
Sbjct: 201 KFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SVEYGKKKRRYL 258
Query: 375 PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
PY+ QH YFFLIGPP L F+ +++ +W DL W SFY R FL+Y+P
Sbjct: 259 PYNQQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWADLLWAASFYARFFLSYLPFYGVP 318
Query: 555 XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
VR LES+WFVW+TQMNHIP I H+++ DW S Q+ ATCNV S F +WFSG
Sbjct: 319 GVLLFFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWVSSQLAATCNVEPSLFTNWFSG 378
Query: 735 HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
HLNFQIEHHLFPRMPRHNY +VAPLV+SLCAKHG+ Y+ KP L+A DIV SLK+SG +W
Sbjct: 379 HLNFQIEHHLFPRMPRHNYSRVAPLVKSLCAKHGLSYEVKPFLTALVDIVRSLKKSGDIW 438
Query: 915 LDAYLHQ 935
LDAYLHQ
Sbjct: 439 LDAYLHQ 445
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,182,150
Number of extensions: 1702203
Number of successful extensions: 5650
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5635
Number of HSP's successfully gapped: 3
Length of query: 433
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,835,944
Effective search space: 4866189632
Effective search space used: 4866189632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003681
(1300 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666206.1| fatty acid desaturase 1 [Mus musculus]. 582 e-166
Alignment gi|NP_062673.1| fatty acid desaturase 2 [Mus musculus]. 436 e-122
Alignment gi|NP_001075133.1| fatty acid desaturase 2-like protein [Mus mu... 375 e-104
Alignment gi|NP_068690.3| fatty acid desaturase 3 [Mus musculus]. 375 e-104
>ref|NP_666206.1| fatty acid desaturase 1 [Mus musculus].
Length = 447
Score = 582 bits (1500), Expect = e-166
Identities = 260/311 (83%), Positives = 283/311 (90%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
++LLHILLLDV AWL LW+FGTS VPF+LCAVLLSTVQAQAGWLQHD GHLSVF TSTWN
Sbjct: 137 VYLLHILLLDVAAWLTLWIFGTSLVPFILCAVLLSTVQAQAGWLQHDFGHLSVFGTSTWN 196
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
HL+HHFVIGHLKGAPASWWNH+HFQHHAKPNCF KDPDINMHP FFALGK+L VELG++K
Sbjct: 197 HLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPLFFALGKVLPVELGREK 256
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KK+MPY+HQHKYFFLIGPPALLP YFQWYIFYFV++RKKWVDLAWM SFY RIF TY+P
Sbjct: 257 KKHMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVVQRKKWVDLAWMLSFYARIFFTYMPL 316
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
VRFLESNWFVWVTQMNHIPMHIDHDRNVDW S Q++ATCNVH+SAFN+
Sbjct: 317 LGLKGFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNVDWVSTQLQATCNVHQSAFNN 376
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAK+GI+Y+SKPLL+AFADIV+SLKES
Sbjct: 377 WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYESKPLLTAFADIVYSLKES 436
Query: 903 GQLWLDAYLHQ 935
GQLWLDAYLHQ
Sbjct: 437 GQLWLDAYLHQ 447
>ref|NP_062673.1| fatty acid desaturase 2 [Mus musculus].
Length = 444
Score = 436 bits (1121), Expect = e-122
Identities = 200/310 (64%), Positives = 238/310 (76%), Gaps = 1/310 (0%)
Frame = +3
Query: 9 LLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHL 188
L HI++++ AW IL FGT ++P ++ A +L+T QAQAGWLQHD GHLSV+ S WNH+
Sbjct: 137 LSHIIVMESLAWFILSYFGTGWIPTLVTAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHV 196
Query: 189 VHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDI-NMHPFFFALGKILSVELGKQKK 365
VH FVIGHLKGA A+WWNH HFQHHAKPN F KDPDI ++H F LG+ +E GK+K
Sbjct: 197 VHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDIKSLH--VFVLGEWQPLEYGKKKL 254
Query: 366 KYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXX 545
KY+PY+HQH+YFFLIGPP L+P YFQ+ I +I R+ WVDLAW S+Y+R F TY+P
Sbjct: 255 KYLPYNHQHEYFFLIGPPLLIPMYFQYQIIMTMISRRDWVDLAWAISYYMRFFYTYIPFY 314
Query: 546 XXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDW 725
+RFLES+WFVWVTQMNH+ M ID D DWFS Q+ ATCNV +S FNDW
Sbjct: 315 GILGALVFLNFIRFLESHWFVWVTQMNHLVMEIDLDHYRDWFSSQLAATCNVEQSFFNDW 374
Query: 726 FSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESG 905
FSGHLNFQIEHHLFP MPRHN HK+APLV+SLCAKHGIEYQ KPLL A DIV SLK+SG
Sbjct: 375 FSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALIDIVSSLKKSG 434
Query: 906 QLWLDAYLHQ 935
+LWLDAYLH+
Sbjct: 435 ELWLDAYLHK 444
>ref|NP_001075133.1| fatty acid desaturase 2-like protein [Mus musculus].
Length = 487
Score = 375 bits (964), Expect = e-104
Identities = 168/308 (54%), Positives = 222/308 (72%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
+HL IL+L+++AWLIL FG+S++ +L + LL+ QAQ +LQHDLGHLS+F S WN
Sbjct: 179 LHLAQILILEISAWLILHHFGSSWLVTILISFLLTVSQAQCSFLQHDLGHLSMFKKSKWN 238
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
HL+H FV+ HLKG A WWN+ HFQHH KPN + KDPDI++ P F +G ++ GK+K
Sbjct: 239 HLMHKFVMCHLKGLSADWWNYRHFQHHVKPNIYPKDPDIDVGPLFL-VGDTQPIKYGKKK 297
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KY+ Y+ QH YF+++ P L+P YF + RK W+D+AW++SFY+R F+T+ P
Sbjct: 298 IKYIDYEKQHLYFYMVALPFLMPVYFNLQSMQVMYLRKYWMDIAWVSSFYIRYFITFGPF 357
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
V+F+ES W +VTQM+HIPM + + N DW S QV ATCN+ +S FND
Sbjct: 358 YGIFGTVLLIYLVKFIESPWIAYVTQMSHIPMKMSSEENHDWLSTQVVATCNIEQSFFND 417
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG++Y +KP+L AF DIV SLK+S
Sbjct: 418 WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLQYINKPILKAFGDIVRSLKKS 477
Query: 903 GQLWLDAY 926
LW++AY
Sbjct: 478 ASLWMNAY 485
>ref|NP_068690.3| fatty acid desaturase 3 [Mus musculus].
Length = 449
Score = 375 bits (964), Expect = e-104
Identities = 173/307 (56%), Positives = 216/307 (70%)
Frame = +3
Query: 15 HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
HIL +++ AWLI++L G +V +L A++L+ QAQ LQHDLGH S+F+ S WNH+
Sbjct: 145 HILAMELLAWLIIYLLGPGWVSSILAALILAISQAQCWCLQHDLGHASIFTKSRWNHVAQ 204
Query: 195 HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
FV+G LKG A WWN HFQHHAKPN F KDPD+ + P F LG+ SVE GK+K++Y+
Sbjct: 205 QFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SVEYGKKKRRYL 262
Query: 375 PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
PY+HQH YFFLIGPP L F+ +++ +W DL W SFY R FL+Y P
Sbjct: 263 PYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWTDLLWAASFYSRFFLSYSPFYGAT 322
Query: 555 XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
VR LES+WFVW+TQMNHIP I H+++ DW S Q+ ATCNV S F DWFSG
Sbjct: 323 GTLLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSG 382
Query: 735 HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
HLNFQIEHHLFP MPRHNY +VAPLV++ CAKHG+ Y+ KP L+A DI+ SLK+SG +W
Sbjct: 383 HLNFQIEHHLFPTMPRHNYRRVAPLVKAFCAKHGLHYEVKPFLTALVDIIGSLKKSGDIW 442
Query: 915 LDAYLHQ 935
LDAYLHQ
Sbjct: 443 LDAYLHQ 449
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,411,676
Number of extensions: 1424167
Number of successful extensions: 4579
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4567
Number of HSP's successfully gapped: 4
Length of query: 433
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 329
Effective length of database: 12,493,815
Effective search space: 4110465135
Effective search space used: 4110465135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003681
(1300 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122678.1| PREDICTED: fatty acid desaturase 1-like [Sus... 644 0.0
Alignment gi|NP_001106512.1| fatty acid desaturase 1 [Sus scrofa]. 639 0.0
Alignment gi|NP_001165221.1| fatty acid desaturase 2 [Sus scrofa]. 438 e-123
Alignment gi|NP_001193363.1| fatty acid desaturase 3 [Sus scrofa]. 381 e-106
>ref|XP_003122678.1| PREDICTED: fatty acid desaturase 1-like [Sus scrofa].
Length = 386
Score = 644 bits (1661), Expect = 0.0
Identities = 297/311 (95%), Positives = 298/311 (95%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN
Sbjct: 76 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 135
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK
Sbjct: 136 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 195
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KKYMPY+HQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVP
Sbjct: 196 KKYMPYNHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPL 255
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
VRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND
Sbjct: 256 LGLKGSLGLLFLVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 315
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES
Sbjct: 316 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 375
Query: 903 GQLWLDAYLHQ 935
GQLWLDAYLHQ
Sbjct: 376 GQLWLDAYLHQ 386
>ref|NP_001106512.1| fatty acid desaturase 1 [Sus scrofa].
Length = 445
Score = 639 bits (1648), Expect = 0.0
Identities = 295/311 (94%), Positives = 296/311 (95%)
Frame = +3
Query: 3 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN
Sbjct: 135 MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 194
Query: 183 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK
Sbjct: 195 HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 254
Query: 363 KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
KKYMPY+HQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVP
Sbjct: 255 KKYMPYNHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPL 314
Query: 543 XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
RFLESNWFVWVTQMNHIPMHIDHDRNV WFSMQVRATCNVHKSAFND
Sbjct: 315 LGLKGSLGLLFLARFLESNWFVWVTQMNHIPMHIDHDRNVVWFSMQVRATCNVHKSAFND 374
Query: 723 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES
Sbjct: 375 WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 434
Query: 903 GQLWLDAYLHQ 935
GQLWLDAYLHQ
Sbjct: 435 GQLWLDAYLHQ 445
>ref|NP_001165221.1| fatty acid desaturase 2 [Sus scrofa].
Length = 444
Score = 438 bits (1127), Expect = e-123
Identities = 197/309 (63%), Positives = 236/309 (76%)
Frame = +3
Query: 9 LLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHL 188
L HI+++++ AW + FG ++P ++ A +L+T QAQAGWLQHD GHLSV+ STWNH+
Sbjct: 137 LAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSVYKKSTWNHI 196
Query: 189 VHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKK 368
VH F+IGHLKGA A+WWNH HFQHHAKPN F KDPD+NM F LG+ VE GK+K K
Sbjct: 197 VHKFIIGHLKGASANWWNHRHFQHHAKPNIFSKDPDVNML-HVFVLGERQPVEYGKKKLK 255
Query: 369 YMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXX 548
Y+PY+HQH+YFFLIGPP L+P YFQ+ I +I RK WVDLAW S+Y R F+T+ P
Sbjct: 256 YLPYNHQHEYFFLIGPPVLIPLYFQYQIIMTMIVRKDWVDLAWAFSYYARFFITFSPFYG 315
Query: 549 XXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWF 728
+RFLES+WFVWVTQMNHI M ID + DWFS Q+ ATCNV +S FNDWF
Sbjct: 316 VLGAILFLNFIRFLESHWFVWVTQMNHIVMEIDREPYRDWFSTQLAATCNVEQSFFNDWF 375
Query: 729 SGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQ 908
SGHLNFQIEHHLFP MPRHN HK+APLV+SLCAKHGIEYQ KPLL A DI+ SL++SGQ
Sbjct: 376 SGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALMDIIGSLRKSGQ 435
Query: 909 LWLDAYLHQ 935
LWLDAYLH+
Sbjct: 436 LWLDAYLHK 444
>ref|NP_001193363.1| fatty acid desaturase 3 [Sus scrofa].
Length = 443
Score = 381 bits (979), Expect = e-106
Identities = 174/307 (56%), Positives = 219/307 (71%)
Frame = +3
Query: 15 HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
HIL ++V AWLI++L G +VP L A +L+ QAQ+ LQHDLGH+S+F S WNHL
Sbjct: 139 HILAMEVLAWLIIYLLGPGWVPSTLAAFILAISQAQSWCLQHDLGHISIFRKSWWNHLAQ 198
Query: 195 HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
FV+G LKG A WWN HFQHHAKPN F KDPD+ + P F LG+ S+E G++K++Y+
Sbjct: 199 QFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SIEYGQKKRRYL 256
Query: 375 PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
PY+HQH YFFLIGPP L F+ +++ +W DL W SFY+R FL+Y+P
Sbjct: 257 PYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCLQWTDLLWAASFYIRFFLSYIPLYGVP 316
Query: 555 XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
VR LES+WFVW+TQMNHIP I H+++ DW S Q+ ATCNV S F DWFSG
Sbjct: 317 GALLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSG 376
Query: 735 HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
HLNFQIEHHLFP MPRHNY +VAPLV++LCAKHG+ Y+ KP L+A DI+ SLK+SG +W
Sbjct: 377 HLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLKKSGNVW 436
Query: 915 LDAYLHQ 935
L+AYLHQ
Sbjct: 437 LEAYLHQ 443
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,156,110
Number of extensions: 1089391
Number of successful extensions: 3569
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3556
Number of HSP's successfully gapped: 4
Length of query: 433
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 331
Effective length of database: 8,804,438
Effective search space: 2914268978
Effective search space used: 2914268978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003681
(1300 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 678 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 678 bits (342), Expect = 0.0
Identities = 397/414 (95%), Gaps = 1/414 (0%)
Strand = Plus / Minus
Query: 887 ctcactgaaggagtccgggcaactctggctggatgcctatcttcaccagtaacagcagcc 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250900 ctcactgaaggagtccgggcaactctggctggatgcctatcttcaccagtaacagcagcc 9250841
Query: 947 tcccatctggaagaagagccttggagccaaaacagagtggggcttggggacaatgccact 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250840 tcccatctggaagaagagccttggagccaaaacagagtggggcttggggacaatgccact 9250781
Query: 1007 accatcctagtattcagaggggatgggtttgagatgaaggctgtgactcaaacccctccc 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250780 accatcctagtattcagaggggatgggtttgagatgaaggctgtgactcaaacccctccc 9250721
Query: 1067 ctttatcttccaggcagggatctaagacccaaacaggggtggggaaaacaggcaggcgcc 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250720 ctttatcttccaggcagggatctaagacccaaacaggggtggggaaaacaggcaggcgcc 9250661
Query: 1127 ccccggaaggagggatggagctgccgggcagaggtatgagtggtctccttttccgctgga 1186
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9250660 ccccagaaggagggatggagctgccgggcagaggtgtgagtggtctccttttccgctggg 9250601
Query: 1187 gagatgctaatggtctggtctgtgagcaaagaacgattcccgagggtgttagaattaggg 1246
|||||| |||||||||||||||||||||||| || || ||||||||||||| |||||
Sbjct: 9250600 cagatgcagatggtctggtctgtgagcaaagaaggagtcaggagggtgttagaa-taggg 9250542
Query: 1247 agggttcactgatcccaaaaatcaccaaaatgagggttgttttccttttggctg 1300
||||| |||||| |||| |||||| ||| |||| ||||||||||||||||||||
Sbjct: 9250541 agggtccactgagcccagaaatcagcaagatgatggttgttttccttttggctg 9250488
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 217 agggggcccctgccagttggtggaaccacctgcacttccagcaccatgccaagcccaact 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258610 agggggcccctgccagttggtggaaccacctgcacttccagcaccatgccaagcccaact 9258551
Query: 277 gcttctgcaaagacccagacatcaacatgcaccccttcttctttgccttggggaaaatcc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258550 gcttctgcaaagacccagacatcaacatgcaccccttcttctttgccttggggaaaatcc 9258491
Query: 337 tctctgtggag 347
|||||||||||
Sbjct: 9258490 tctctgtggag 9258480
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 761 tcttttccccaggatgccgcgacacaactaccacaaagtggctcccctggtgcagtccct 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251359 tcttttccccaggatgccgcgacacaactaccacaaagtggctcccctggtgcagtccct 9251300
Query: 821 gtgtgccaagcatggtatagagtaccagtccaagcccctgctctcggccttcgccgacat 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251299 gtgtgccaagcatggtatagagtaccagtccaagcccctgctctcggccttcgccgacat 9251240
Query: 881 tgtgca 886
||||||
Sbjct: 9251239 tgtgca 9251234
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 1 taatgcacctgctgcacatcctgctgctggacgtcactgcctggctcattctttggctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9259756 taatgcacctgctgcacatcctgctgctggacgtcactgcctggctcattctttggctct 9259697
Query: 61 tcgggacgtcctttgtgcccttcgtcctctgtgcggtgctgctcagcacagttcagg 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9259696 tcgggacgtcctttgtgcccttcgtcctctgtgcggtgctgctcagcacagttcagg 9259640
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 114 caggcccaggctggctggctgcagcatgacttgggacacctgtccgtcttcagcacctct 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258812 caggcccaggctggctggctgcagcatgacttgggacacctgtccgtcttcagcacctct 9258753
Query: 174 acgtggaaccacctggtacatcattttgtgattggccacctgaagg 219
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258752 acgtggaaccacctggtacatcattttgtgattggccacctgaagg 9258707
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 581 caggttcctagaaagcaactggttcgtgtgggtgacacagatgaaccacatccccatgca 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251873 caggttcctagaaagcaactggttcgtgtgggtgacacagatgaaccacatccccatgca 9251814
Query: 641 catcgatcacgaccggaacgtggactggttctccatgcaggt 682
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251813 catcgatcacgaccggaacgtggactggttctccatgcaggt 9251772
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 485 ggacttggcctggatgacgtccttctatgtgcgcatcttcctcacttatgtgccactgtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9252184 ggacttggcctggatgacgtccttctatgtgcgcatcttcctcacttatgtgccactgtt 9252125
Query: 545 ggggctgaagggctccctgggcctcctcttcctggtcaggt 585
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 9252124 ggggctgaagggctccctgggcctcctcttcctggtcaggt 9252084
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 678 caggtccgggcaacgtgcaacgtccacaagtcggccttcaatgattggttcagtggccac 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251552 caggtccgggcaacgtgcaacgtccacaagtcggccttcaatgattggttcagtggccac 9251493
Query: 738 ctcaacttccagattgagcacca 760
|||||||||||||||||||||||
Sbjct: 9251492 ctcaacttccagattgagcacca 9251470
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 409 ttgggcccccagccttgctgcctgcctacttccagtggtatattttctattttgttatca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9252960 ttgggcccccagccttgctgcctgcctacttccagtggtatattttctattttgttatca 9252901
Query: 469 agaggaagaagtgggtgg 486
||||||||||||||||||
Sbjct: 9252900 agaggaagaagtgggtgg 9252883
Score = 117 bits (59), Expect = 2e-23
Identities = 62/63 (98%)
Strand = Plus / Minus
Query: 346 agcttgggaaacagaagaaaaagtacatgccatacgaccaccagcacaaatacttcttct 405
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9254696 agcttgggaaacagaagaaaaagtacatgccatacaaccaccagcacaaatacttcttct 9254637
Query: 406 tga 408
|||
Sbjct: 9254636 tga 9254634
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 714 ttcaatgattggttcagtggccacctcaacttccagattgagcacca 760
|||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct: 9151141 ttcaatgactggttcagcgggcacctcaacttccagattgagcacca 9151187
Score = 63.9 bits (32), Expect = 2e-07
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 581 caggttcctagaaagcaactggttcgtgtgggtgacacagatgaaccacatcccca 636
|||| |||| || ||| |||||||||||||| | ||||||||||||||||||||||
Sbjct: 9161265 cagggtcctggagagccactggttcgtgtggatcacacagatgaaccacatcccca 9161210
Score = 61.9 bits (31), Expect = 8e-07
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 581 caggttcctagaaagcaactggttcgtgtgggtgacacagatgaaccacat 631
||||||||| || ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 9150672 caggttcctggagagccactggtttgtgtgggtcacacagatgaaccacat 9150722
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 807 ctggtgcagtccctgtgtgccaagcatggtatagagtaccag 848
|||||| |||||||||||||||||||||| || |||||||||
Sbjct: 9151681 ctggtgaagtccctgtgtgccaagcatggcattgagtaccag 9151722
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,394,455
Number of extensions: 245
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 14
Length of query: 1300
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1279
Effective length of database: 2,808,413,156
Effective search space: 3591960426524
Effective search space used: 3591960426524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)