Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003686
(802 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776611.1| gamma-synuclein [Bos taurus]. 150 2e-36
Alignment gi|NP_001068828.1| beta-synuclein [Bos taurus]. 107 1e-23
Alignment gi|NP_001029213.1| alpha-synuclein [Bos taurus]. 99 3e-21
>ref|NP_776611.1| gamma-synuclein [Bos taurus].
Length = 127
Score = 150 bits (378), Expect = 2e-36
Identities = 82/108 (75%), Positives = 83/108 (76%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK
Sbjct: 1 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDLHQPAPSQD 443
EQ EE ENIAVTSGVV KE L QP PSQ+
Sbjct: 61 EQANAVSEAVVSSVNTVATKTVEEVENIAVTSGVVHKEALKQPVPSQE 108
>ref|NP_001068828.1| beta-synuclein [Bos taurus].
Length = 134
Score = 107 bits (267), Expect = 1e-23
Identities = 60/99 (60%), Positives = 68/99 (68%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S+AKEGVV A EKTKQGVTEAAEKTKEGV+YVG+KT+EGVVQ V SVAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKED 416
EQ A NIA +G+V+KE+
Sbjct: 61 EQ-----------ASHLGGAVFSGAGNIAAATGLVKKEE 88
>ref|NP_001029213.1| alpha-synuclein [Bos taurus].
Length = 140
Score = 99.4 bits (246), Expect = 3e-21
Identities = 55/100 (55%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA +TKEGV+YVG+KTKEGVV VT+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGRTKEGVLYVGSKTKEGVVHGVTTVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G +K+ +
Sbjct: 61 EQVTNVGEAVVTGVTAVAQKTVEGAGSIAAATGFGKKDHM 100
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 23,843,351
Number of extensions: 622500
Number of successful extensions: 3275
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3248
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 167
Effective length of database: 14,372,574
Effective search space: 2400219858
Effective search space used: 2400219858
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003686
(802 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853773.1| PREDICTED: similar to synuclein, gamma (breast ... 113 2e-25
Alignment gi|XP_536421.2| PREDICTED: similar to synuclein, beta isoform 1... 107 1e-23
Alignment gi|XP_852568.1| PREDICTED: similar to synuclein, beta isoform 2... 107 1e-23
Alignment gi|XP_860972.1| PREDICTED: similar to alpha-synuclein isoform N... 101 7e-22
Alignment gi|XP_860942.1| PREDICTED: similar to alpha-synuclein isoform N... 101 7e-22
Alignment gi|XP_860914.1| PREDICTED: similar to alpha-synuclein isoform N... 101 7e-22
Alignment gi|XP_535656.1| PREDICTED: similar to alpha-synuclein isoform N... 101 7e-22
Alignment gi|XP_860878.1| PREDICTED: similar to alpha-synuclein isoform N... 75 5e-14
>ref|XP_853773.1| PREDICTED: similar to synuclein, gamma (breast cancer-specific
protein 1) [Canis familiaris].
Length = 234
Score = 113 bits (282), Expect = 2e-25
Identities = 62/86 (72%), Positives = 65/86 (75%)
Frame = +3
Query: 153 KEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTKEQXXXXXXXXX 332
+EGVVGAVEKTKQGVTEAAEKTKEGV+YVGAKTKE VVQSVTSVAEKTKEQ
Sbjct: 6 QEGVVGAVEKTKQGVTEAAEKTKEGVLYVGAKTKENVVQSVTSVAEKTKEQANAVSEAVV 65
Query: 333 XXXXXXXXXXXEEAENIAVTSGVVRK 410
EEAENIA+TSGVVRK
Sbjct: 66 TSINTVAVKTVEEAENIAITSGVVRK 91
>ref|XP_536421.2| PREDICTED: similar to synuclein, beta isoform 1 [Canis familiaris].
Length = 134
Score = 107 bits (267), Expect = 1e-23
Identities = 60/99 (60%), Positives = 68/99 (68%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S+AKEGVV A EKTKQGVTEAAEKTKEGV+YVG+KT+EGVVQ V SVAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKED 416
EQ A NIA +G+V+KE+
Sbjct: 61 EQ-----------ASHLGGAVFSGAGNIAAATGLVKKEE 88
>ref|XP_852568.1| PREDICTED: similar to synuclein, beta isoform 2 [Canis familiaris].
Length = 134
Score = 107 bits (267), Expect = 1e-23
Identities = 60/99 (60%), Positives = 68/99 (68%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S+AKEGVV A EKTKQGVTEAAEKTKEGV+YVG+KT+EGVVQ V SVAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKED 416
EQ A NIA +G+V+KE+
Sbjct: 61 EQ-----------ASHLGGAVFSGAGNIAAATGLVKKEE 88
>ref|XP_860972.1| PREDICTED: similar to alpha-synuclein isoform NACP140 isoform 5
[Canis familiaris].
Length = 140
Score = 101 bits (252), Expect = 7e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV VT+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G +K+ L
Sbjct: 61 EQVTNVGEAVVTGVTAVAQKTVEGAGSIAAATGFGKKDQL 100
>ref|XP_860942.1| PREDICTED: similar to alpha-synuclein isoform NACP140 isoform 4
[Canis familiaris].
Length = 140
Score = 101 bits (252), Expect = 7e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV VT+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G +K+ L
Sbjct: 61 EQVTNVGEAVVTGVTAVAQKTVEGAGSIAAATGFGKKDQL 100
>ref|XP_860914.1| PREDICTED: similar to alpha-synuclein isoform NACP140 isoform 3
[Canis familiaris].
Length = 140
Score = 101 bits (252), Expect = 7e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV VT+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G +K+ L
Sbjct: 61 EQVTNVGEAVVTGVTAVAQKTVEGAGSIAAATGFGKKDQL 100
>ref|XP_535656.1| PREDICTED: similar to alpha-synuclein isoform NACP140 isoform 1
[Canis familiaris].
Length = 140
Score = 101 bits (252), Expect = 7e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV VT+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G +K+ L
Sbjct: 61 EQVTNVGEAVVTGVTAVAQKTVEGAGSIAAATGFGKKDQL 100
>ref|XP_860878.1| PREDICTED: similar to alpha-synuclein isoform NACP140 isoform 2
[Canis familiaris].
Length = 126
Score = 75.5 bits (184), Expect = 5e-14
Identities = 46/69 (66%), Positives = 49/69 (71%), Gaps = 8/69 (11%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGA-KTK-------EGVVQSV 275
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YV A KTK E VV V
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVVAEKTKEQVTNVGEAVVTGV 60
Query: 276 TSVAEKTKE 302
T+VA+KT E
Sbjct: 61 TAVAQKTVE 69
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 24,671,183
Number of extensions: 617299
Number of successful extensions: 3125
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3071
Number of HSP's successfully gapped: 8
Length of query: 267
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 166
Effective length of database: 15,507,568
Effective search space: 2574256288
Effective search space used: 2574256288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003686
(802 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003078.2| gamma-synuclein [Homo sapiens]. 149 3e-36
Alignment gi|NP_001001502.1| beta-synuclein [Homo sapiens]. 106 3e-23
Alignment gi|NP_003076.1| beta-synuclein [Homo sapiens]. 106 3e-23
Alignment gi|NP_001139527.1| alpha-synuclein isoform NACP140 [Homo sapien... 102 4e-22
Alignment gi|NP_001139526.1| alpha-synuclein isoform NACP140 [Homo sapien... 102 4e-22
Alignment gi|NP_009292.1| alpha-synuclein isoform NACP112 [Homo sapiens]. 102 4e-22
Alignment gi|NP_000336.1| alpha-synuclein isoform NACP140 [Homo sapiens]. 102 4e-22
>ref|NP_003078.2| gamma-synuclein [Homo sapiens].
Length = 127
Score = 149 bits (376), Expect = 3e-36
Identities = 82/108 (75%), Positives = 83/108 (76%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKE VVQSVTSVAEKTK
Sbjct: 1 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDLHQPAPSQD 443
EQ EEAENIAVTSGVVRKEDL AP Q+
Sbjct: 61 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQE 108
>ref|NP_001001502.1| beta-synuclein [Homo sapiens].
Length = 134
Score = 106 bits (264), Expect = 3e-23
Identities = 59/99 (59%), Positives = 68/99 (68%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S+AKEGVV A EKTKQGVTEAAEKTKEGV+YVG+KT+EGVVQ V SVAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKED 416
EQ A NIA +G+V++E+
Sbjct: 61 EQ-----------ASHLGGAVFSGAGNIAAATGLVKREE 88
>ref|NP_003076.1| beta-synuclein [Homo sapiens].
Length = 134
Score = 106 bits (264), Expect = 3e-23
Identities = 59/99 (59%), Positives = 68/99 (68%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S+AKEGVV A EKTKQGVTEAAEKTKEGV+YVG+KT+EGVVQ V SVAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKED 416
EQ A NIA +G+V++E+
Sbjct: 61 EQ-----------ASHLGGAVFSGAGNIAAATGLVKREE 88
>ref|NP_001139527.1| alpha-synuclein isoform NACP140 [Homo sapiens].
Length = 140
Score = 102 bits (254), Expect = 4e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV V +VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G V+K+ L
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQL 100
>ref|NP_001139526.1| alpha-synuclein isoform NACP140 [Homo sapiens].
Length = 140
Score = 102 bits (254), Expect = 4e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV V +VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G V+K+ L
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQL 100
>ref|NP_009292.1| alpha-synuclein isoform NACP112 [Homo sapiens].
Length = 112
Score = 102 bits (254), Expect = 4e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV V +VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G V+K+ L
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQL 100
>ref|NP_000336.1| alpha-synuclein isoform NACP140 [Homo sapiens].
Length = 140
Score = 102 bits (254), Expect = 4e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV V +VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G V+K+ L
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQL 100
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,283,690
Number of extensions: 612250
Number of successful extensions: 3308
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3257
Number of HSP's successfully gapped: 7
Length of query: 267
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 166
Effective length of database: 14,967,800
Effective search space: 2484654800
Effective search space used: 2484654800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003686
(802 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035560.1| gamma-synuclein [Mus musculus]. 145 5e-35
Alignment gi|NP_001035916.1| alpha-synuclein [Mus musculus]. 105 4e-23
Alignment gi|NP_033247.1| alpha-synuclein [Mus musculus]. 105 4e-23
Alignment gi|NP_291088.1| beta-synuclein [Mus musculus]. 100 2e-21
>ref|NP_035560.1| gamma-synuclein [Mus musculus].
Length = 123
Score = 145 bits (365), Expect = 5e-35
Identities = 79/108 (73%), Positives = 81/108 (75%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVG KTKE VVQSVTSVAEKTK
Sbjct: 1 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGTKTKENVVQSVTSVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDLHQPAPSQD 443
EQ EEAENI VT+GVVRKEDL PA Q+
Sbjct: 61 EQANAVSEAVVSSVNTVANKTVEEAENIVVTTGVVRKEDLEPPAQDQE 108
>ref|NP_001035916.1| alpha-synuclein [Mus musculus].
Length = 140
Score = 105 bits (262), Expect = 4e-23
Identities = 58/100 (58%), Positives = 65/100 (65%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV VT+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A NIA +G V+K+ +
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVKKDQM 100
>ref|NP_033247.1| alpha-synuclein [Mus musculus].
Length = 140
Score = 105 bits (262), Expect = 4e-23
Identities = 58/100 (58%), Positives = 65/100 (65%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV VT+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A NIA +G V+K+ +
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVKKDQM 100
>ref|NP_291088.1| beta-synuclein [Mus musculus].
Length = 133
Score = 100 bits (248), Expect = 2e-21
Identities = 59/99 (59%), Positives = 66/99 (66%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S+AKEGVV A EKTKQGVTEAAEKTKEGV+YVG+KT GVVQ V SVAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKT-SGVVQGVASVAEKTK 59
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKED 416
EQ A NIA +G+V+KE+
Sbjct: 60 EQ-----------ASHLGGAVFSGAGNIAAATGLVKKEE 87
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,458,490
Number of extensions: 506793
Number of successful extensions: 2623
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2577
Number of HSP's successfully gapped: 4
Length of query: 267
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 167
Effective length of database: 12,613,959
Effective search space: 2106531153
Effective search space used: 2106531153
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003686
(802 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096681.1| gamma-synuclein [Sus scrofa]. 166 1e-41
Alignment gi|XP_001927693.1| PREDICTED: gamma-synuclein-like [Sus scrofa]. 166 1e-41
Alignment gi|NP_001106164.1| beta-synuclein [Sus scrofa]. 107 8e-24
Alignment gi|NP_001032222.1| alpha-synuclein [Sus scrofa]. 101 4e-22
Alignment gi|XP_003357129.1| PREDICTED: alpha-synuclein-like [Sus scrofa]. 101 4e-22
>ref|NP_001096681.1| gamma-synuclein [Sus scrofa].
Length = 126
Score = 166 bits (420), Expect = 1e-41
Identities = 92/126 (73%), Positives = 92/126 (73%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK
Sbjct: 1 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDLHQPAPSQDXXXXXXXXXXXX 479
EQ EEAENIAVTSGVVRKEDLHQPAPSQD
Sbjct: 61 EQASAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLHQPAPSQDEAAKVEEEVAGE 120
Query: 480 XXSGGD 497
SGGD
Sbjct: 121 AKSGGD 126
>ref|XP_001927693.1| PREDICTED: gamma-synuclein-like [Sus scrofa].
Length = 126
Score = 166 bits (420), Expect = 1e-41
Identities = 92/126 (73%), Positives = 92/126 (73%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK
Sbjct: 1 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDLHQPAPSQDXXXXXXXXXXXX 479
EQ EEAENIAVTSGVVRKEDLHQPAPSQD
Sbjct: 61 EQASAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLHQPAPSQDEAAKVEEEVAGE 120
Query: 480 XXSGGD 497
SGGD
Sbjct: 121 AKSGGD 126
>ref|NP_001106164.1| beta-synuclein [Sus scrofa].
Length = 133
Score = 107 bits (267), Expect = 8e-24
Identities = 60/99 (60%), Positives = 68/99 (68%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S+AKEGVV A EKTKQGVTEAAEKTKEGV+YVG+KT+EGVVQ V SVAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKED 416
EQ A NIA +G+V+KE+
Sbjct: 61 EQ-----------ASHLGGAVFSGAGNIAAATGLVKKEE 88
>ref|NP_001032222.1| alpha-synuclein [Sus scrofa].
Length = 140
Score = 101 bits (252), Expect = 4e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV VT+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G +K+ L
Sbjct: 61 EQVTNVGEAVVTGVTAVAQKTVEGAGSIAAATGFGKKDQL 100
>ref|XP_003357129.1| PREDICTED: alpha-synuclein-like [Sus scrofa].
Length = 105
Score = 101 bits (252), Expect = 4e-22
Identities = 57/100 (57%), Positives = 64/100 (64%)
Frame = +3
Query: 120 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKEGVVQSVTSVAEKTK 299
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKEGVV VT+VAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTK 60
Query: 300 EQXXXXXXXXXXXXXXXXXXXXEEAENIAVTSGVVRKEDL 419
EQ E A +IA +G +K+ L
Sbjct: 61 EQVTNVGEAVVTGVTAVAQKTVEGAGSIAAATGFGKKDQL 100
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,552,771
Number of extensions: 423707
Number of successful extensions: 1975
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 5
Length of query: 267
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 170
Effective length of database: 8,928,923
Effective search space: 1517916910
Effective search space used: 1517916910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003686
(802 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 527 e-147
Sscrofa_Chr02 86 3e-14
>Sscrofa_Chr14
|| Length = 153851969
Score = 527 bits (266), Expect = e-147
Identities = 288/299 (96%)
Strand = Plus / Minus
Query: 478 aggccaagagtgggggagattagaggcctgccaaggagctgcggagggcctgaggaacac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95192140 aggccaagagtgggggagattagaggcctgccaaggagctgcggagggcctgaggaacac 95192081
Query: 538 tcttctgcctcggatcccaccccctcctggtacaaggagtgtctgaccctggaatgtgac 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95192080 tcttctgcctcggatcccaccccctcctggtacaaggagtgtctgaccctggaatgtgac 95192021
Query: 598 ctgcagggctgcccacagtccctgcatcccctcccagctgccccaggatgccaccactgc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95192020 ctgcagggctgcccacagtccctgcatcccctcccagctgccccaggatgccaccactgc 95191961
Query: 658 cttcacctccctcccctgccctctcccaccctctggtccttctgaccccaccgatgctgc 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95191960 cttcacctccctcccctgccctctcccaccctctggtccttctgaccccaccgatgctgc 95191901
Query: 718 tgtgaannnnnnnnnnnaatgattttgatgatttcaaataacactcaaatctgcactgc 776
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95191900 tgtgaatttttttttttaatgattttgatgatttcaaataacactcaaatctgcactgc 95191842
Score = 511 bits (258), Expect = e-142
Identities = 286/299 (95%)
Strand = Plus / Plus
Query: 478 aggccaagagtgggggagattagaggcctgccaaggagctgcggagggcctgaggaacac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95313950 aggccaagagtgggggagattagaggcctgccaaggagctgcggagggcctgaggaacac 95314009
Query: 538 tcttctgcctcggatcccaccccctcctggtacaaggagtgtctgaccctggaatgtgac 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95314010 tcttctgcctcggatcccaccccctcctggtacaaggagtgtctgaccctggaatgtgac 95314069
Query: 598 ctgcagggctgcccacagtccctgcatcccctcccagctgccccaggatgccaccactgc 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95314070 ctgcagggctggccacagtccctgcatcccctcccagctgccccaggatgccaccactgc 95314129
Query: 658 cttcacctccctcccctgccctctcccaccctctggtccttctgaccccaccgatgctgc 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95314130 cttcacctccctcccctgccctctcccaccctctggtccttctgaccccaccgatgctgc 95314189
Query: 718 tgtgaannnnnnnnnnnaatgattttgatgatttcaaataacactcaaatctgcactgc 776
| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95314190 tatgaatttttttttttaatgattttgatgatttcaaataacactcaaatctgcactgc 95314248
Score = 470 bits (237), Expect = e-130
Identities = 237/237 (100%)
Strand = Plus / Minus
Query: 5 atttcattggcgtcaataagaggcagcagcagcggggacagctgctgcagcagcactcga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95196684 atttcattggcgtcaataagaggcagcagcagcggggacagctgctgcagcagcactcga 95196625
Query: 65 gccagctccagtcacagttcgcctggggagtccagctcggtccctgcccaccaccatgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95196624 gccagctccagtcacagttcgcctggggagtccagctcggtccctgcccaccaccatgga 95196565
Query: 125 tgtcttcaagaagggcttctccatcgccaaggagggtgtggtgggcgccgtggagaagac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95196564 tgtcttcaagaagggcttctccatcgccaaggagggtgtggtgggcgccgtggagaagac 95196505
Query: 185 caagcagggggtgacggaggcagctgagaagaccaaggagggtgtcatgtatgtggg 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95196504 caagcagggggtgacggaggcagctgagaagaccaaggagggtgtcatgtatgtggg 95196448
Score = 446 bits (225), Expect = e-123
Identities = 234/237 (98%)
Strand = Plus / Plus
Query: 5 atttcattggcgtcaataagaggcagcagcagcggggacagctgctgcagcagcactcga 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 95309375 atttcattggcgtcaataagaggcagcagcagcggggacagctgctgcagcagcactcaa 95309434
Query: 65 gccagctccagtcacagttcgcctggggagtccagctcggtccctgcccaccaccatgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95309435 gccagctccagtcacagttcgcctggggagtccagctcggtccctgcccaccaccatgga 95309494
Query: 125 tgtcttcaagaagggcttctccatcgccaaggagggtgtggtgggcgccgtggagaagac 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 95309495 tgtcttcaagaagggcttctccatcgccaaggagggtgtggtaggcgccgtggagaagac 95309554
Query: 185 caagcagggggtgacggaggcagctgagaagaccaaggagggtgtcatgtatgtggg 241
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 95309555 caagcagggggtgacagaggcagctgagaagaccaaggagggtgtcatgtatgtggg 95309611
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 280 cagtggctgagaagaccaaggagcaagccagtgctgtgagcgaggctgtggtctccagcg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95195126 cagtggctgagaagaccaaggagcaagccagtgctgtgagcgaggctgtggtctccagcg 95195067
Query: 340 tcaacactgtggccaccaagactgtggaggaggcagagaacatcgcggtcacctccggag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95195066 tcaacactgtggccaccaagactgtggaggaggcagagaacatcgcggtcacctccggag 95195007
Query: 400 tggtgcgcaagg 411
||||||||||||
Sbjct: 95195006 tggtgcgcaagg 95194995
Score = 254 bits (128), Expect = 6e-65
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 280 cagtggctgagaagaccaaggagcaagccagtgctgtgagcgaggctgtggtctccagcg 339
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 95310953 cagtggctgagaagaccaaggagcaggccagtgctgtgagcgaggctgtggtctccagcg 95311012
Query: 340 tcaacactgtggccaccaagactgtggaggaggcagagaacatcgcggtcacctccggag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95311013 tcaacactgtggccaccaagactgtggaggaggcagagaacatcgcggtcacctccggag 95311072
Query: 400 tggtgcgcaagg 411
||||||||||||
Sbjct: 95311073 tggtgcgcaagg 95311084
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 409 aggaggacctgcatcaacctgccccctcacaggacgaggcagccaaagtggaagaggaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95192436 aggaggacctgcatcaacctgccccctcacaggacgaggcagccaaagtggaagaggaag 95192377
Query: 469 tggctggagagg 480
||||||||||||
Sbjct: 95192376 tggctggagagg 95192365
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 409 aggaggacctgcatcaacctgccccctcacaggacgaggcagccaaagtggaagaggaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95313654 aggaggacctgcatcaacctgccccctcacaggacgaggcagccaaagtggaagaggaag 95313713
Query: 469 tggctggagagg 480
||||||||||||
Sbjct: 95313714 tggctggagagg 95313725
Score = 85.7 bits (43), Expect = 3e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 240 ggagccaagaccaaggaaggtgttgtgcagagtgtgacctcag 282
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95195662 ggagccaagaccaaggaaggtgttgtgcagagtgtgacctcag 95195620
Score = 85.7 bits (43), Expect = 3e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 240 ggagccaagaccaaggaaggtgttgtgcagagtgtgacctcag 282
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95310397 ggagccaagaccaaggaaggtgttgtgcagagtgtgacctcag 95310439
>Sscrofa_Chr02
|| Length = 162569375
Score = 85.7 bits (43), Expect = 3e-14
Identities = 94/111 (84%)
Strand = Plus / Plus
Query: 120 atggatgtcttcaagaagggcttctccatcgccaaggagggtgtggtgggcgccgtggag 179
||||| || |||| ||||||| | ||||| ||||||||||| || |||| ||| | ||||
Sbjct: 82890461 atggacgtgttcatgaagggcctgtccatggccaaggagggcgttgtggccgctgcggag 82890520
Query: 180 aagaccaagcagggggtgacggaggcagctgagaagaccaaggagggtgtc 230
|| |||||||| ||||| || ||||| || |||||||||||||||||||||
Sbjct: 82890521 aaaaccaagcaaggggtcaccgaggccgcggagaagaccaaggagggtgtc 82890571
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,022,837
Number of extensions: 323
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 13
Length of query: 802
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 781
Effective length of database: 2,808,413,156
Effective search space: 2193370674836
Effective search space used: 2193370674836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)