Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003687
(1026 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039679.1| acyl-CoA-binding domain-containing protein 4... 300 2e-81
Alignment gi|NP_851381.1| acyl-CoA-binding domain-containing protein 5 [B... 144 1e-34
Alignment gi|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [B... 75 1e-13
Alignment gi|NP_001106792.1| acyl-CoA-binding protein [Bos taurus]. 72 6e-13
Alignment gi|XP_002683943.1| PREDICTED: acyl-CoA-binding protein-like [Bo... 70 3e-12
Alignment gi|NP_001077252.1| acyl-CoA-binding domain-containing protein 6... 66 6e-11
Alignment gi|NP_847892.1| diazepam-binding inhibitor-like 5 [Bos taurus]. 60 3e-09
Alignment gi|NP_001106768.1| acyl-CoA-binding domain-containing protein 7... 58 2e-08
>ref|NP_001039679.1| acyl-CoA-binding domain-containing protein 4 [Bos taurus].
Length = 303
Score = 300 bits (767), Expect = 2e-81
Identities = 138/149 (92%), Positives = 146/149 (97%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MG E+ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCL+P+PG
Sbjct: 1 MGIENESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLIPQPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKW+AWNSLG+MSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61 FWDPIGRYKWEAWNSLGQMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDA 838
QVIPDMPRPPETFLRR+TGWKEQ LNGDA
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQALNGDA 149
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/81 (40%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +1
Query: 784 DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
D+P R T W+ P P+ + P P+ QDSEVFCDS+
Sbjct: 125 DMPRPPETFLRRVTGWKEQALNGDAEAAPEPPCLPKEPAPPSLESQPPRDQDSEVFCDSV 184
Query: 943 EQLEPELVWAEQGSAHGGELD 1005
EQLEPELV EQ A GGE D
Sbjct: 185 EQLEPELVGEEQRGALGGEND 205
>ref|NP_851381.1| acyl-CoA-binding domain-containing protein 5 [Bos taurus].
Length = 533
Score = 144 bits (363), Expect = 1e-34
Identities = 62/113 (54%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + +PGFWDP+GRYKWDA
Sbjct: 43 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSKPGFWDPVGRYKWDA 102
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+++T+P+ E ++ P Y+++ D
Sbjct: 103 WSSLGDMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 151
>ref|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [Bos taurus].
Length = 393
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/77 (46%), Positives = 49/77 (63%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
QK F AV+ ++ L ++ P E L+ Y+ YKQAT GPC VP+PG D I + KWDA
Sbjct: 39 QKDFNNAVSQVKLLKED----PGNEVKLKLYALYKQATEGPCNVPKPGMLDFINKTKWDA 94
Query: 608 WNSLGKMSREEAMSAYI 658
WN+LG +S+E A Y+
Sbjct: 95 WNALGSLSKEAARQNYV 111
>ref|NP_001106792.1| acyl-CoA-binding protein [Bos taurus].
Length = 87
Score = 72.4 bits (176), Expect = 6e-13
Identities = 38/86 (44%), Positives = 53/86 (61%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q +F A +++L +P+ EEML YS+YKQATVG RPG D G+ KWDA
Sbjct: 3 QAEFDKAAEEVKHLKT----KPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDA 58
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
WN L S+E+AM AYI +++ + +K
Sbjct: 59 WNELKGTSKEDAMKAYIDKVEELKKK 84
>ref|XP_002683943.1| PREDICTED: acyl-CoA-binding protein-like [Bos taurus].
Length = 84
Score = 70.1 bits (170), Expect = 3e-12
Identities = 37/79 (46%), Positives = 47/79 (59%)
Frame = +2
Query: 422 DCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKW 601
D Q +F+ AV +NL S RP +L+ Y++YKQAT G RPGF D +GR KW
Sbjct: 3 DLQTRFETAVANSKNL----SERPDNPTLLKIYAFYKQATTGDVEGERPGFSDFVGRAKW 58
Query: 602 DAWNSLGKMSREEAMSAYI 658
DAWN L + +EAM YI
Sbjct: 59 DAWNGLKGKTADEAMQLYI 77
>ref|NP_001077252.1| acyl-CoA-binding domain-containing protein 6 [Bos taurus].
Length = 282
Score = 65.9 bits (159), Expect = 6e-11
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Frame = +2
Query: 341 FLQSRSKVGPQGSEQLGMGTES------ESPEPDCQKQ----FQAAVNVIQNLPKNGSYR 490
FL S + G G E L G +S +SP+ + + F+ A +Q L + S
Sbjct: 5 FLPSGATTGDSGGE-LSSGDDSGDVESLQSPKIEASRSLPELFEKAAEHLQGLVQVASR- 62
Query: 491 PSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMK 670
E++L Y+ YKQ VG C P+P F+D G+ KW+AW +LG S +AM YI +K
Sbjct: 63 ---EQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK 119
>ref|NP_847892.1| diazepam-binding inhibitor-like 5 [Bos taurus].
Length = 87
Score = 60.1 bits (144), Expect = 3e-09
Identities = 33/82 (40%), Positives = 45/82 (54%)
Frame = +2
Query: 425 CQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWD 604
CQ +F+ A I+ L S +E L YSYYKQAT G C +P P D + KW+
Sbjct: 2 CQVEFEMACAAIKQLKGP----VSDQEKLLVYSYYKQATQGDCNIPAPPATDLKAKAKWE 57
Query: 605 AWNSLGKMSREEAMSAYITEMK 670
AWN MS+ +AM YI +++
Sbjct: 58 AWNENKGMSKMDAMRIYIAKVE 79
>ref|NP_001106768.1| acyl-CoA-binding domain-containing protein 7 [Bos taurus].
Length = 88
Score = 57.8 bits (138), Expect = 2e-08
Identities = 30/86 (34%), Positives = 46/86 (53%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q F A ++ L RP EE+ Y YKQ+ +G + P D G+ KW+A
Sbjct: 4 QADFDKAAKDVRKLKT----RPDDEELKELYGLYKQSVIGDIDIECPALLDLKGKAKWEA 59
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
WN +S+E+AM+AYI++ K + +K
Sbjct: 60 WNLQKGLSKEDAMNAYISKAKELIEK 85
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,975,970
Number of extensions: 1539760
Number of successful extensions: 8573
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8499
Number of HSP's successfully gapped: 9
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003687
(1026 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855685.1| PREDICTED: similar to acyl-Coenzyme A binding d... 294 8e-80
Alignment gi|XP_548051.2| PREDICTED: similar to acyl-Coenzyme A binding d... 294 8e-80
Alignment gi|XP_535171.2| PREDICTED: similar to acyl-Coenzyme A binding d... 145 5e-35
Alignment gi|XP_857382.1| PREDICTED: similar to acyl-Coenzyme A binding d... 145 5e-35
Alignment gi|XP_848880.1| PREDICTED: similar to acyl-Coenzyme A binding d... 145 5e-35
Alignment gi|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-C... 76 5e-14
Alignment gi|NP_001183976.1| acyl-CoA-binding protein [Canis lupus famili... 71 1e-12
Alignment gi|XP_850165.1| PREDICTED: similar to diazepam binding inhibito... 69 6e-12
Alignment gi|XP_537152.2| PREDICTED: similar to acyl-Coenzyme A binding d... 65 1e-10
Alignment gi|XP_537760.2| PREDICTED: similar to endozepine-like peptide [... 62 9e-10
>ref|XP_855685.1| PREDICTED: similar to acyl-Coenzyme A binding domain containing 4
isoform 2 [Canis familiaris].
Length = 269
Score = 294 bits (753), Expect = 8e-80
Identities = 137/150 (91%), Positives = 145/150 (96%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGT++ESPEPD QKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1 MGTKNESPEPDYQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLG VA DMF +FEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGAVAEDMFAHFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
+VIPDMPRPPETFLRR+TGW+EQVLNGD G
Sbjct: 121 RVIPDMPRPPETFLRRVTGWREQVLNGDVG 150
Score = 63.9 bits (154), Expect = 2e-10
Identities = 37/88 (42%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Frame = +1
Query: 784 DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
D+P R T WR P P+ P P P+ DSEVFCDSL
Sbjct: 125 DMPRPPETFLRRVTGWREQVLNGDVGATPEPPCLPREPEPPSPESQPPRDLDSEVFCDSL 184
Query: 943 EQLEPELVWAEQGSAHGGELDAGTARSL 1026
EQLEPELVW EQ A GGE D + L
Sbjct: 185 EQLEPELVWTEQKGAPGGEPDTRNSSML 212
>ref|XP_548051.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 4
isoform 1 [Canis familiaris].
Length = 300
Score = 294 bits (753), Expect = 8e-80
Identities = 137/150 (91%), Positives = 145/150 (96%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGT++ESPEPD QKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1 MGTKNESPEPDYQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLG VA DMF +FEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGAVAEDMFAHFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
+VIPDMPRPPETFLRR+TGW+EQVLNGD G
Sbjct: 121 RVIPDMPRPPETFLRRVTGWREQVLNGDVG 150
Score = 63.9 bits (154), Expect = 2e-10
Identities = 37/88 (42%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Frame = +1
Query: 784 DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
D+P R T WR P P+ P P P+ DSEVFCDSL
Sbjct: 125 DMPRPPETFLRRVTGWREQVLNGDVGATPEPPCLPREPEPPSPESQPPRDLDSEVFCDSL 184
Query: 943 EQLEPELVWAEQGSAHGGELDAGTARSL 1026
EQLEPELVW EQ A GGE D + L
Sbjct: 185 EQLEPELVWTEQKGAPGGEPDTRNSSML 212
>ref|XP_535171.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5
isoform 1 [Canis familiaris].
Length = 515
Score = 145 bits (367), Expect = 5e-35
Identities = 64/113 (56%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLARPGFWDPIGRYKWDA 104
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+++T+P+ E ++ P Y+++ D
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 153
>ref|XP_857382.1| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5
isoform 4 [Canis familiaris].
Length = 517
Score = 145 bits (367), Expect = 5e-35
Identities = 64/113 (56%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 47 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLARPGFWDPIGRYKWDA 106
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+++T+P+ E ++ P Y+++ D
Sbjct: 107 WSSLGDMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 155
>ref|XP_848880.1| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5
isoform 3 [Canis familiaris].
Length = 526
Score = 145 bits (367), Expect = 5e-35
Identities = 64/113 (56%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLARPGFWDPIGRYKWDA 104
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+++T+P+ E ++ P Y+++ D
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 153
>ref|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-CoA isomerase isoform
1 [Canis familiaris].
Length = 659
Score = 76.3 bits (186), Expect = 5e-14
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
QK F++A+N ++ L K+ P E L+ Y+ YKQ T GPC PRPG +D I + KWDA
Sbjct: 306 QKDFESAMNQVKLLKKD----PGNEVKLKLYALYKQTTEGPCNTPRPGVFDLINKAKWDA 361
Query: 608 WNSLGKMSREEAMSAYI 658
WN+LG + +E A Y+
Sbjct: 362 WNALGNLPKETARQNYV 378
>ref|NP_001183976.1| acyl-CoA-binding protein [Canis lupus familiaris].
Length = 87
Score = 71.2 bits (173), Expect = 1e-12
Identities = 36/86 (41%), Positives = 53/86 (61%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q +F A +++L +P+ +EML YS+YKQATVG RPG D G+ KWDA
Sbjct: 3 QAEFDKAAEDVKHLKT----KPADDEMLYIYSHYKQATVGDINTERPGLLDLRGKAKWDA 58
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
WN L S+E+AM AY+ +++ + +K
Sbjct: 59 WNQLKGTSKEDAMKAYVNKVEDLKKK 84
>ref|XP_850165.1| PREDICTED: similar to diazepam binding inhibitor [Canis
familiaris].
Length = 127
Score = 69.3 bits (168), Expect = 6e-12
Identities = 37/99 (37%), Positives = 56/99 (56%)
Frame = +2
Query: 389 GMGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRP 568
G + +P Q +F A +++L +P+ +EML YS+YKQAT+G P
Sbjct: 30 GKVPKPHNPASMSQAEFDKATEDVKHLET----KPADDEMLFIYSHYKQATIGDVNTEWP 85
Query: 569 GFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
G D G+ KWDAWN L + S+E AM AYI +++ + +K
Sbjct: 86 GLLDLRGKAKWDAWNHLKRTSKENAMKAYINKVEDLKKK 124
>ref|XP_537152.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 6
[Canis familiaris].
Length = 282
Score = 65.1 bits (157), Expect = 1e-10
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Frame = +2
Query: 341 FLQSRSKVGPQGSEQLGMGTES------ESPEPDCQ----KQFQAAVNVIQNLPKNGSYR 490
FL + + G G E L G +S +SPE + + F+ A +Q L + S
Sbjct: 5 FLTAGATTGDSGGE-LSSGDDSGDVESRQSPETEASGSLAELFEQAAAHLQGLVQVASR- 62
Query: 491 PSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMK 670
E++L Y+ YKQ VG C P+P F+D G+ KW+AW +LG S +AM YI +K
Sbjct: 63 ---EQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK 119
>ref|XP_537760.2| PREDICTED: similar to endozepine-like peptide [Canis familiaris].
Length = 207
Score = 62.0 bits (149), Expect = 9e-10
Identities = 34/92 (36%), Positives = 50/92 (54%)
Frame = +2
Query: 410 SPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIG 589
S P CQ +F+ A I+ L S +E L YS+YKQAT G C +P P D
Sbjct: 117 SAPPMCQVEFEMACAAIKQLKGP----VSDQEKLLVYSFYKQATQGDCNIPAPPATDVKA 172
Query: 590 RYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
+ KW+AWN MS+ +AM Y+ +++ + +K
Sbjct: 173 KAKWEAWNQNKGMSKMDAMRIYVAKVEELKKK 204
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,920,811
Number of extensions: 1587470
Number of successful extensions: 8871
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 8819
Number of HSP's successfully gapped: 13
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003687
(1026 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129177.1| acyl-CoA-binding domain-containing protein 4... 308 7e-96
Alignment gi|NP_078998.1| acyl-CoA-binding domain-containing protein 4 is... 308 7e-96
Alignment gi|NP_001129178.1| acyl-CoA-binding domain-containing protein 4... 333 2e-91
Alignment gi|NP_001129176.1| acyl-CoA-binding domain-containing protein 4... 333 2e-91
Alignment gi|NP_001129179.1| acyl-CoA-binding domain-containing protein 4... 308 8e-91
Alignment gi|NP_001035938.1| acyl-CoA-binding domain-containing protein 5... 146 3e-35
Alignment gi|NP_663736.2| acyl-CoA-binding domain-containing protein 5 is... 146 3e-35
Alignment gi|NP_065438.1| acyl-CoA-binding protein isoform 1 [Homo sapien... 77 3e-14
Alignment gi|NP_001171513.1| acyl-CoA-binding protein isoform 1 [Homo sap... 77 3e-14
Alignment gi|NP_006108.2| enoyl-CoA delta isomerase 2, mitochondrial isof... 75 1e-13
>ref|NP_001129177.1| acyl-CoA-binding domain-containing protein 4 isoform 2 [Homo
sapiens].
Length = 305
Score = 308 bits (788), Expect(2) = 7e-96
Identities = 143/150 (95%), Positives = 147/150 (98%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
QVIPDMPRPPETFLRR+TGWKEQV+NGD G
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVG 150
Score = 62.4 bits (150), Expect(2) = 7e-96
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Frame = +1
Query: 853 TSPP--PQGTSTPKPRVPAPQGQDSEVFCDSLEQLEPELVWAEQGSAHGGELD 1005
+ PP P+ + P P +P+ DSEVFCDSLEQLEPELVW EQ +A GG+ D
Sbjct: 153 SEPPCLPKEPAPPSPESHSPRDLDSEVFCDSLEQLEPELVWTEQRAASGGKRD 205
>ref|NP_078998.1| acyl-CoA-binding domain-containing protein 4 isoform 2 [Homo
sapiens].
Length = 305
Score = 308 bits (788), Expect(2) = 7e-96
Identities = 143/150 (95%), Positives = 147/150 (98%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
QVIPDMPRPPETFLRR+TGWKEQV+NGD G
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVG 150
Score = 62.4 bits (150), Expect(2) = 7e-96
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Frame = +1
Query: 853 TSPP--PQGTSTPKPRVPAPQGQDSEVFCDSLEQLEPELVWAEQGSAHGGELD 1005
+ PP P+ + P P +P+ DSEVFCDSLEQLEPELVW EQ +A GG+ D
Sbjct: 153 SEPPCLPKEPAPPSPESHSPRDLDSEVFCDSLEQLEPELVWTEQRAASGGKRD 205
>ref|NP_001129178.1| acyl-CoA-binding domain-containing protein 4 isoform 1 [Homo
sapiens].
Length = 341
Score = 333 bits (853), Expect = 2e-91
Identities = 165/219 (75%), Positives = 171/219 (78%), Gaps = 13/219 (5%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG-------------XXXXXXXXXXXXXXXXX 892
QVIPDMPRPPETFLRR+TGWKEQV+NGD G
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180
Query: 893 XXXXXRDRTLKFSVIPWSSWSLSWFGQSRGVPMGESSTP 1009
T +FSVIPWSSWSLSWFGQS G + ES P
Sbjct: 181 SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIP 219
>ref|NP_001129176.1| acyl-CoA-binding domain-containing protein 4 isoform 1 [Homo
sapiens].
Length = 341
Score = 333 bits (853), Expect = 2e-91
Identities = 165/219 (75%), Positives = 171/219 (78%), Gaps = 13/219 (5%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG-------------XXXXXXXXXXXXXXXXX 892
QVIPDMPRPPETFLRR+TGWKEQV+NGD G
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180
Query: 893 XXXXXRDRTLKFSVIPWSSWSLSWFGQSRGVPMGESSTP 1009
T +FSVIPWSSWSLSWFGQS G + ES P
Sbjct: 181 SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIP 219
>ref|NP_001129179.1| acyl-CoA-binding domain-containing protein 4 isoform 3 [Homo
sapiens].
Length = 268
Score = 308 bits (788), Expect(2) = 8e-91
Identities = 143/150 (95%), Positives = 147/150 (98%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1 MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
QVIPDMPRPPETFLRR+TGWKEQV+NGD G
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVG 150
Score = 45.4 bits (106), Expect(2) = 8e-91
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +1
Query: 853 TSPP--PQGTSTPKPRVPAPQGQDSEVFCDSLEQLEPEL 963
+ PP P+ + P P +P+ DSEVFCDSLEQLEPEL
Sbjct: 153 SEPPCLPKEPAPPSPESHSPRDLDSEVFCDSLEQLEPEL 191
>ref|NP_001035938.1| acyl-CoA-binding domain-containing protein 5 isoform 2 [Homo
sapiens].
Length = 490
Score = 146 bits (369), Expect = 3e-35
Identities = 65/113 (57%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 9 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 68
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+I+T+P+ E ++ P Y+++ D
Sbjct: 69 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLRVIGPFYEIVED 117
>ref|NP_663736.2| acyl-CoA-binding domain-containing protein 5 isoform 1 [Homo
sapiens].
Length = 525
Score = 146 bits (369), Expect = 3e-35
Identities = 65/113 (57%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 44 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 103
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+I+T+P+ E ++ P Y+++ D
Sbjct: 104 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLRVIGPFYEIVED 152
>ref|NP_065438.1| acyl-CoA-binding protein isoform 1 [Homo sapiens].
Length = 104
Score = 76.6 bits (187), Expect = 3e-14
Identities = 44/106 (41%), Positives = 59/106 (55%)
Frame = +2
Query: 368 PQGSEQLGMGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVG 547
P S G GTE+E F+ A +++L +PS EEML Y +YKQATVG
Sbjct: 9 PPASANPGTGTEAE---------FEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVG 55
Query: 548 PCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
RPG D G+ KWDAWN L S+E+AM AYI +++ + +K
Sbjct: 56 DINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKK 101
>ref|NP_001171513.1| acyl-CoA-binding protein isoform 1 [Homo sapiens].
Length = 104
Score = 76.6 bits (187), Expect = 3e-14
Identities = 44/106 (41%), Positives = 59/106 (55%)
Frame = +2
Query: 368 PQGSEQLGMGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVG 547
P S G GTE+E F+ A +++L +PS EEML Y +YKQATVG
Sbjct: 9 PPASANPGTGTEAE---------FEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVG 55
Query: 548 PCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
RPG D G+ KWDAWN L S+E+AM AYI +++ + +K
Sbjct: 56 DINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKK 101
>ref|NP_006108.2| enoyl-CoA delta isomerase 2, mitochondrial isoform 1 [Homo
sapiens].
Length = 364
Score = 74.7 bits (182), Expect = 1e-13
Identities = 34/77 (44%), Positives = 50/77 (64%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
QK F+ ++N ++ L K+ P E L+ Y+ YKQAT GPC +P+PG +D I + KWDA
Sbjct: 10 QKDFENSMNQVKLLKKD----PGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDA 65
Query: 608 WNSLGKMSREEAMSAYI 658
WN+LG + +E A Y+
Sbjct: 66 WNALGSLPKEAARQNYV 82
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,798,288
Number of extensions: 1532731
Number of successful extensions: 8419
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 8358
Number of HSP's successfully gapped: 24
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003687
(1026 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080264.1| acyl-Coenzyme A binding domain containing 4 iso... 281 8e-76
Alignment gi|NP_001095908.1| acyl-CoA-binding domain-containing protein 5... 146 2e-35
Alignment gi|NP_001095907.1| acyl-CoA-binding domain-containing protein 5... 146 2e-35
Alignment gi|NP_001095906.1| acyl-CoA-binding domain-containing protein 5... 146 2e-35
Alignment gi|NP_083069.1| acyl-CoA-binding domain-containing protein 5 is... 146 2e-35
Alignment gi|NP_001103802.1| enoyl-CoA delta isomerase 2, mitochondrial i... 74 2e-13
Alignment gi|NP_035998.2| enoyl-CoA delta isomerase 2, mitochondrial isof... 74 2e-13
Alignment gi|NP_001103801.1| enoyl-CoA delta isomerase 2, mitochondrial i... 74 2e-13
Alignment gi|NP_031856.1| acyl-CoA-binding protein isoform 2 [Mus musculu... 66 5e-11
Alignment gi|NP_001033088.1| acyl-CoA-binding protein isoform 1 [Mus musc... 65 9e-11
>ref|NP_080264.1| acyl-Coenzyme A binding domain containing 4 isoform 1 [Mus
musculus].
Length = 329
Score = 281 bits (718), Expect = 8e-76
Identities = 133/145 (91%), Positives = 138/145 (95%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGTE E EPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1 MGTEKE--EPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 58
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWN LGKMSREEAMSAYI+EMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 59 FWDPIGRYKWDAWNRLGKMSREEAMSAYISEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 118
Query: 752 QVIPDMPRPPETFLRRITGWKEQVL 826
QVIPDMPRPPETFLRR TGWKE ++
Sbjct: 119 QVIPDMPRPPETFLRRATGWKEPLV 143
>ref|NP_001095908.1| acyl-CoA-binding domain-containing protein 5 isoform b [Mus
musculus].
Length = 508
Score = 146 bits (369), Expect = 2e-35
Identities = 65/113 (57%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+I+T+P+ E ++ P Y+++ D
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLHVIGPFYEIVED 153
>ref|NP_001095907.1| acyl-CoA-binding domain-containing protein 5 isoform a [Mus
musculus].
Length = 509
Score = 146 bits (369), Expect = 2e-35
Identities = 65/113 (57%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+I+T+P+ E ++ P Y+++ D
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLHVIGPFYEIVED 153
>ref|NP_001095906.1| acyl-CoA-binding domain-containing protein 5 isoform d [Mus
musculus].
Length = 472
Score = 146 bits (369), Expect = 2e-35
Identities = 65/113 (57%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 9 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 68
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+I+T+P+ E ++ P Y+++ D
Sbjct: 69 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLHVIGPFYEIVED 117
>ref|NP_083069.1| acyl-CoA-binding domain-containing protein 5 isoform c [Mus
musculus].
Length = 473
Score = 146 bits (369), Expect = 2e-35
Identities = 65/113 (57%), Positives = 88/113 (77%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 9 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 68
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
W+SLG M++EEAM AY+ EMK K+I+T+P+ E ++ P Y+++ D
Sbjct: 69 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLHVIGPFYEIVED 117
>ref|NP_001103802.1| enoyl-CoA delta isomerase 2, mitochondrial isoform b [Mus
musculus].
Length = 358
Score = 73.9 bits (180), Expect = 2e-13
Identities = 34/77 (44%), Positives = 49/77 (63%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q+ F+ A+N ++ L K+ P E LR Y+ YKQAT GPC +P+PG D + + KWDA
Sbjct: 5 QQDFENALNQVKLLKKD----PGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDA 60
Query: 608 WNSLGKMSREEAMSAYI 658
WN+LG + +E A Y+
Sbjct: 61 WNALGSLPKETARQNYV 77
>ref|NP_035998.2| enoyl-CoA delta isomerase 2, mitochondrial isoform b [Mus
musculus].
Length = 358
Score = 73.9 bits (180), Expect = 2e-13
Identities = 34/77 (44%), Positives = 49/77 (63%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q+ F+ A+N ++ L K+ P E LR Y+ YKQAT GPC +P+PG D + + KWDA
Sbjct: 5 QQDFENALNQVKLLKKD----PGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDA 60
Query: 608 WNSLGKMSREEAMSAYI 658
WN+LG + +E A Y+
Sbjct: 61 WNALGSLPKETARQNYV 77
>ref|NP_001103801.1| enoyl-CoA delta isomerase 2, mitochondrial isoform a [Mus
musculus].
Length = 391
Score = 73.9 bits (180), Expect = 2e-13
Identities = 34/77 (44%), Positives = 49/77 (63%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q+ F+ A+N ++ L K+ P E LR Y+ YKQAT GPC +P+PG D + + KWDA
Sbjct: 38 QQDFENALNQVKLLKKD----PGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDA 93
Query: 608 WNSLGKMSREEAMSAYI 658
WN+LG + +E A Y+
Sbjct: 94 WNALGSLPKETARQNYV 110
>ref|NP_031856.1| acyl-CoA-binding protein isoform 2 [Mus musculus].
Length = 87
Score = 65.9 bits (159), Expect = 5e-11
Identities = 34/86 (39%), Positives = 49/86 (56%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q +F A ++ L +P+ EEML YS++KQATVG RPG D G+ KWD+
Sbjct: 3 QAEFDKAAEEVKRLKT----QPTDEEMLFIYSHFKQATVGDVNTDRPGLLDLKGKAKWDS 58
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
WN L S+E AM Y+ ++ + +K
Sbjct: 59 WNKLKGTSKESAMKTYVEKVDELKKK 84
>ref|NP_001033088.1| acyl-CoA-binding protein isoform 1 [Mus musculus].
Length = 135
Score = 65.1 bits (157), Expect = 9e-11
Identities = 37/97 (38%), Positives = 52/97 (53%)
Frame = +2
Query: 395 GTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGF 574
GT E P +F A ++ L +P+ EEML YS++KQATVG RPG
Sbjct: 45 GTARELPA-----EFDKAAEEVKRLKT----QPTDEEMLFIYSHFKQATVGDVNTDRPGL 95
Query: 575 WDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
D G+ KWD+WN L S+E AM Y+ ++ + +K
Sbjct: 96 LDLKGKAKWDSWNKLKGTSKESAMKTYVEKVDELKKK 132
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,995,340
Number of extensions: 1257277
Number of successful extensions: 6820
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6747
Number of HSP's successfully gapped: 16
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003687
(1026 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358059.1| PREDICTED: acyl-CoA-binding domain-containin... 318 2e-87
Alignment gi|XP_003131372.1| PREDICTED: acyl-CoA-binding domain-containin... 318 2e-87
Alignment gi|XP_003130802.2| PREDICTED: acyl-CoA-binding domain-containin... 148 4e-36
Alignment gi|NP_999284.1| acyl-CoA-binding protein [Sus scrofa]. 75 8e-14
Alignment gi|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [... 69 4e-12
Alignment gi|XP_003357610.1| PREDICTED: acyl-CoA-binding domain-containin... 67 1e-11
Alignment gi|XP_003130396.2| PREDICTED: acyl-CoA-binding domain-containin... 67 1e-11
Alignment gi|XP_003358615.1| PREDICTED: acyl-CoA-binding protein-like [Su... 63 2e-10
Alignment gi|XP_003131864.1| PREDICTED: diazepam-binding inhibitor-like 5... 59 4e-09
Alignment gi|XP_003357793.1| PREDICTED: acyl-CoA-binding domain-containin... 57 2e-08
>ref|XP_003358059.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like
isoform 2 [Sus scrofa].
Length = 304
Score = 318 bits (816), Expect = 2e-87
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG
Sbjct: 1 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
QVIPDMPRPPETFLRRITGWKEQVLNGDAG
Sbjct: 121 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 150
Score = 80.5 bits (197), Expect = 1e-15
Identities = 42/82 (51%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Frame = +1
Query: 784 DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
D+P R T W+ P P+ + P P P+ QDSEVFCDSL
Sbjct: 125 DMPRPPETFLRRITGWKEQVLNGDAGAAPEPPRLPKEPAPPSPESQPPRDQDSEVFCDSL 184
Query: 943 EQLEPELVWAEQGSAHGGELDA 1008
EQLEPELVWAEQGSAHGGELDA
Sbjct: 185 EQLEPELVWAEQGSAHGGELDA 206
>ref|XP_003131372.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like
isoform 1 [Sus scrofa].
Length = 269
Score = 318 bits (816), Expect = 2e-87
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +2
Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG
Sbjct: 1 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 60
Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY
Sbjct: 61 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 120
Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
QVIPDMPRPPETFLRRITGWKEQVLNGDAG
Sbjct: 121 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 150
Score = 80.5 bits (197), Expect = 1e-15
Identities = 42/82 (51%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Frame = +1
Query: 784 DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
D+P R T W+ P P+ + P P P+ QDSEVFCDSL
Sbjct: 125 DMPRPPETFLRRITGWKEQVLNGDAGAAPEPPRLPKEPAPPSPESQPPRDQDSEVFCDSL 184
Query: 943 EQLEPELVWAEQGSAHGGELDA 1008
EQLEPELVWAEQGSAHGGELDA
Sbjct: 185 EQLEPELVWAEQGSAHGGELDA 206
>ref|XP_003130802.2| PREDICTED: acyl-CoA-binding domain-containing protein 5 [Sus
scrofa].
Length = 520
Score = 148 bits (374), Expect = 4e-36
Identities = 65/113 (57%), Positives = 89/113 (78%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
+ +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
WNSLG+M++EEAM AY+ EMK K+++T+P+ E ++ P Y+++ D
Sbjct: 105 WNSLGEMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 153
>ref|NP_999284.1| acyl-CoA-binding protein [Sus scrofa].
Length = 87
Score = 74.7 bits (182), Expect = 8e-14
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q +F+ A ++NL +P+ +EML YS+YKQATVG RPG D G+ KWDA
Sbjct: 3 QAEFEKAAEEVKNLKT----KPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDA 58
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
WN L S+E+AM AYI +++ + +K
Sbjct: 59 WNGLKGTSKEDAMKAYINKVEELKKK 84
>ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa].
Length = 394
Score = 68.9 bits (167), Expect = 4e-12
Identities = 33/77 (42%), Positives = 47/77 (61%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q+ F A+N ++ L ++ P E L+ Y+ YKQAT GPC P+PG D I + KWDA
Sbjct: 42 QEDFAKAMNQVKLLKED----PGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDA 97
Query: 608 WNSLGKMSREEAMSAYI 658
WN+LG + +E A Y+
Sbjct: 98 WNALGNLPKETARQNYV 114
>ref|XP_003357610.1| PREDICTED: acyl-CoA-binding domain-containing protein 6-like
isoform 2 [Sus scrofa].
Length = 265
Score = 67.4 bits (163), Expect = 1e-11
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Frame = +2
Query: 341 FLQSRSKVGPQGSEQLGMGTES------ESPEPDCQKQ----FQAAVNVIQNLPKNGSYR 490
FL S + G G E L G +S +SPE + + F+ A +Q L + S
Sbjct: 5 FLPSGATTGDSGGE-LSSGDDSGDAESLQSPETEASRSLTELFEKAAAHLQGLVQVASR- 62
Query: 491 PSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMK 670
E++L Y+ YKQ VG C P+P F+D G+ KW+AW +LG S +AM YI +K
Sbjct: 63 ---EQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK 119
>ref|XP_003130396.2| PREDICTED: acyl-CoA-binding domain-containing protein 6-like
isoform 1 [Sus scrofa].
Length = 282
Score = 67.4 bits (163), Expect = 1e-11
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Frame = +2
Query: 341 FLQSRSKVGPQGSEQLGMGTES------ESPEPDCQKQ----FQAAVNVIQNLPKNGSYR 490
FL S + G G E L G +S +SPE + + F+ A +Q L + S
Sbjct: 5 FLPSGATTGDSGGE-LSSGDDSGDAESLQSPETEASRSLTELFEKAAAHLQGLVQVASR- 62
Query: 491 PSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMK 670
E++L Y+ YKQ VG C P+P F+D G+ KW+AW +LG S +AM YI +K
Sbjct: 63 ---EQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK 119
>ref|XP_003358615.1| PREDICTED: acyl-CoA-binding protein-like [Sus scrofa].
Length = 159
Score = 63.2 bits (152), Expect = 2e-10
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Frame = +2
Query: 353 RSKVGPQGSEQLGMGTESESPEPDC------QKQFQAAVNVIQNLPKNGSYRPSYEEMLR 514
RS +G S + S++P C Q +F+ A +NL +P+ +EML
Sbjct: 44 RSSLGSPASVIRKVILTSQAPWNRCNPASMSQAEFEKAAEEAKNLKT----KPADDEMLF 99
Query: 515 FYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
+YKQATVG +PG D G+ KWDAWN L S+E+AM A+ +++ + +K
Sbjct: 100 ISGHYKQATVGDINTKQPGILDLKGKAKWDAWNGLTWTSKEDAMKAHSNKVEELKKK 156
>ref|XP_003131864.1| PREDICTED: diazepam-binding inhibitor-like 5-like [Sus scrofa].
Length = 87
Score = 58.9 bits (141), Expect = 4e-09
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +2
Query: 425 CQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWD 604
CQ +F+ A I+ L S + E L YS+YKQAT G C +P P D + KW+
Sbjct: 2 CQVEFEMACAAIKQLKGPVSDK----EKLLVYSFYKQATQGDCNIPAPSATDVKAKAKWE 57
Query: 605 AWNSLGKMSREEAMSAYITEMK 670
AWN MS+ +AM Y+ +++
Sbjct: 58 AWNGNKGMSKMDAMRLYVAKVE 79
>ref|XP_003357793.1| PREDICTED: acyl-CoA-binding domain-containing protein 7-like [Sus
scrofa].
Length = 88
Score = 57.0 bits (136), Expect = 2e-08
Identities = 30/86 (34%), Positives = 46/86 (53%)
Frame = +2
Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
Q F A ++ L RP +E+ Y YKQ+ +G + P D G+ KW+A
Sbjct: 4 QADFDKATEDVRKLKT----RPDDQELKELYGLYKQSIIGDIDIECPAMIDLKGKAKWEA 59
Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
WN +S+E+AMSAYI++ K + +K
Sbjct: 60 WNFQKGLSKEDAMSAYISKAKELIEK 85
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,438,752
Number of extensions: 1002170
Number of successful extensions: 5607
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5557
Number of HSP's successfully gapped: 12
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003687
(1026 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 799 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 799 bits (403), Expect = 0.0
Identities = 403/403 (100%)
Strand = Plus / Minus
Query: 78 aggagaattgtatctaggggttcactgtgacccttgccacctgcctctccacccacaccc 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528614 aggagaattgtatctaggggttcactgtgacccttgccacctgcctctccacccacaccc 18528555
Query: 138 gaggttctctccgtcgagcctggtcccacccacgctgcctcggcgtggggcaaggagtct 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528554 gaggttctctccgtcgagcctggtcccacccacgctgcctcggcgtggggcaaggagtct 18528495
Query: 198 cctcggccgcacctcctgacttcccgcggcatctcactcaggcctccgaagagcttagtt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528494 cctcggccgcacctcctgacttcccgcggcatctcactcaggcctccgaagagcttagtt 18528435
Query: 258 tgcccccctggagagtggaccgctggcttggaggtgtgtgcccgggagcgggggaccctg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528434 tgcccccctggagagtggaccgctggcttggaggtgtgtgcccgggagcgggggaccctg 18528375
Query: 318 ggggcctgctcacaacaggcttgttcttgcagagtcgctcaaaagtagggccccagggct 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528374 ggggcctgctcacaacaggcttgttcttgcagagtcgctcaaaagtagggccccagggct 18528315
Query: 378 cggagcagctgggtatgggtactgagagtgaaagtccagaaccggactgccagaaacagt 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528314 cggagcagctgggtatgggtactgagagtgaaagtccagaaccggactgccagaaacagt 18528255
Query: 438 tccaggctgcagtcaacgtcattcagaacctgcctaagaacgg 480
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528254 tccaggctgcagtcaacgtcattcagaacctgcctaagaacgg 18528212
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 684 aggtgatcgacacggtgcctctgggcgaagtggcaggggacatgtttggttacttcgagc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527403 aggtgatcgacacggtgcctctgggcgaagtggcaggggacatgtttggttacttcgagc 18527344
Query: 744 ccctgtaccaggtgatccctgacatgccgaggcccccagagaccttcctgagaaggatca 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527343 ccctgtaccaggtgatccctgacatgccgaggcccccagagaccttcctgagaaggatca 18527284
Query: 804 caggt 808
|||||
Sbjct: 18527283 caggt 18527279
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 479 ggctcttaccgcccatcctacgaagagatgctgcgattctacagctactacaagcaggct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527952 ggctcttaccgcccatcctacgaagagatgctgcgattctacagctactacaagcaggct 18527893
Query: 539 accgtgggtccctgcctggtcccccggcctgggttctgggaccctattggacgttataaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527892 accgtgggtccctgcctggtcccccggcctgggttctgggaccctattggacgttataaa 18527833
Query: 599 tgg 601
|||
Sbjct: 18527832 tgg 18527830
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 600 gggacgcctggaacagcctgggcaagatgagcagggaggaggccatgtctgcctacatca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527760 gggacgcctggaacagcctgggcaagatgagcagggaggaggccatgtctgcctacatca 18527701
Query: 660 ctgagatgaagctggtggcacagaaggt 687
||||||||||||||||||||||||||||
Sbjct: 18527700 ctgagatgaagctggtggcacagaaggt 18527673
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 1 gactcgccccggaggtcagtcggcaacctctgtgcggggggctgggaaacccaggtgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528796 gactcgccccggaggtcagtcggcaacctctgtgcggggggctgggaaacccaggtgtcc 18528737
Query: 61 aggcagtgggcattgcaagg 80
||||||||||||||||||||
Sbjct: 18528736 aggcagtgggcattgcaagg 18528717
Score = 113 bits (57), Expect = 2e-22
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 963 ggtttgggcagagcaggggagtgcccatgggggagagctcgacgcc-ggaacagcccgga 1021
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 18526502 ggtttgggcagagcaggggagtgcccatgggggagagctcgacgccaggaacagcccgga 18526443
Query: 1022 gcctc 1026
|||||
Sbjct: 18526442 gcctc 18526438
Score = 89.7 bits (45), Expect = 3e-15
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 913 caggactctgaagttttctgtgattccctggagcagctggagcctgagctggt 965
||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18526649 caggactctgaggttttttgtgattccctggagcagctggagcctgagctggt 18526597
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 804 caggttggaaagagcaggtactgaatggagatgctggggct 844
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527064 caggttggaaagagcaggtactgaatggagatgctggggct 18527024
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,100,375
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 8
Length of query: 1026
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1005
Effective length of database: 2,808,413,156
Effective search space: 2822455221780
Effective search space used: 2822455221780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)