Animal-Genome cDNA 20110601C-003687


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003687
         (1026 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039679.1| acyl-CoA-binding domain-containing protein 4...   300   2e-81
Alignment   gi|NP_851381.1| acyl-CoA-binding domain-containing protein 5 [B...   144   1e-34
Alignment   gi|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [B...    75   1e-13
Alignment   gi|NP_001106792.1| acyl-CoA-binding protein [Bos taurus].             72   6e-13
Alignment   gi|XP_002683943.1| PREDICTED: acyl-CoA-binding protein-like [Bo...    70   3e-12
Alignment   gi|NP_001077252.1| acyl-CoA-binding domain-containing protein 6...    66   6e-11
Alignment   gi|NP_847892.1| diazepam-binding inhibitor-like 5 [Bos taurus].       60   3e-09
Alignment   gi|NP_001106768.1| acyl-CoA-binding domain-containing protein 7...    58   2e-08

>ref|NP_001039679.1| acyl-CoA-binding domain-containing protein 4 [Bos taurus].
          Length = 303

 Score =  300 bits (767), Expect = 2e-81
 Identities = 138/149 (92%), Positives = 146/149 (97%)
 Frame = +2

Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
           MG E+ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCL+P+PG
Sbjct: 1   MGIENESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLIPQPG 60

Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
           FWDPIGRYKW+AWNSLG+MSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61  FWDPIGRYKWEAWNSLGQMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120

Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDA 838
           QVIPDMPRPPETFLRR+TGWKEQ LNGDA
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQALNGDA 149



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 33/81 (40%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
 Frame = +1

Query: 784  DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
            D+P       R  T W+           P     P+  + P      P+ QDSEVFCDS+
Sbjct: 125  DMPRPPETFLRRVTGWKEQALNGDAEAAPEPPCLPKEPAPPSLESQPPRDQDSEVFCDSV 184

Query: 943  EQLEPELVWAEQGSAHGGELD 1005
            EQLEPELV  EQ  A GGE D
Sbjct: 185  EQLEPELVGEEQRGALGGEND 205


>ref|NP_851381.1| acyl-CoA-binding domain-containing protein 5 [Bos taurus].
          Length = 533

 Score =  144 bits (363), Expect = 1e-34
 Identities = 62/113 (54%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + +PGFWDP+GRYKWDA
Sbjct: 43  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSKPGFWDPVGRYKWDA 102

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+++T+P+ E   ++     P Y+++ D
Sbjct: 103 WSSLGDMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 151


>ref|NP_001029414.2| peroxisomal 3,2-trans-enoyl-CoA isomerase [Bos taurus].
          Length = 393

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/77 (46%), Positives = 49/77 (63%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           QK F  AV+ ++ L ++    P  E  L+ Y+ YKQAT GPC VP+PG  D I + KWDA
Sbjct: 39  QKDFNNAVSQVKLLKED----PGNEVKLKLYALYKQATEGPCNVPKPGMLDFINKTKWDA 94

Query: 608 WNSLGKMSREEAMSAYI 658
           WN+LG +S+E A   Y+
Sbjct: 95  WNALGSLSKEAARQNYV 111


>ref|NP_001106792.1| acyl-CoA-binding protein [Bos taurus].
          Length = 87

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 38/86 (44%), Positives = 53/86 (61%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q +F  A   +++L      +P+ EEML  YS+YKQATVG     RPG  D  G+ KWDA
Sbjct: 3   QAEFDKAAEEVKHLKT----KPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDA 58

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
           WN L   S+E+AM AYI +++ + +K
Sbjct: 59  WNELKGTSKEDAMKAYIDKVEELKKK 84


>ref|XP_002683943.1| PREDICTED: acyl-CoA-binding protein-like [Bos taurus].
          Length = 84

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 37/79 (46%), Positives = 47/79 (59%)
 Frame = +2

Query: 422 DCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKW 601
           D Q +F+ AV   +NL    S RP    +L+ Y++YKQAT G     RPGF D +GR KW
Sbjct: 3   DLQTRFETAVANSKNL----SERPDNPTLLKIYAFYKQATTGDVEGERPGFSDFVGRAKW 58

Query: 602 DAWNSLGKMSREEAMSAYI 658
           DAWN L   + +EAM  YI
Sbjct: 59  DAWNGLKGKTADEAMQLYI 77


>ref|NP_001077252.1| acyl-CoA-binding domain-containing protein 6 [Bos taurus].
          Length = 282

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
 Frame = +2

Query: 341 FLQSRSKVGPQGSEQLGMGTES------ESPEPDCQKQ----FQAAVNVIQNLPKNGSYR 490
           FL S +  G  G E L  G +S      +SP+ +  +     F+ A   +Q L +  S  
Sbjct: 5   FLPSGATTGDSGGE-LSSGDDSGDVESLQSPKIEASRSLPELFEKAAEHLQGLVQVASR- 62

Query: 491 PSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMK 670
              E++L  Y+ YKQ  VG C  P+P F+D  G+ KW+AW +LG  S  +AM  YI  +K
Sbjct: 63  ---EQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK 119


>ref|NP_847892.1| diazepam-binding inhibitor-like 5 [Bos taurus].
          Length = 87

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 33/82 (40%), Positives = 45/82 (54%)
 Frame = +2

Query: 425 CQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWD 604
           CQ +F+ A   I+ L        S +E L  YSYYKQAT G C +P P   D   + KW+
Sbjct: 2   CQVEFEMACAAIKQLKGP----VSDQEKLLVYSYYKQATQGDCNIPAPPATDLKAKAKWE 57

Query: 605 AWNSLGKMSREEAMSAYITEMK 670
           AWN    MS+ +AM  YI +++
Sbjct: 58  AWNENKGMSKMDAMRIYIAKVE 79


>ref|NP_001106768.1| acyl-CoA-binding domain-containing protein 7 [Bos taurus].
          Length = 88

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/86 (34%), Positives = 46/86 (53%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q  F  A   ++ L      RP  EE+   Y  YKQ+ +G   +  P   D  G+ KW+A
Sbjct: 4   QADFDKAAKDVRKLKT----RPDDEELKELYGLYKQSVIGDIDIECPALLDLKGKAKWEA 59

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
           WN    +S+E+AM+AYI++ K + +K
Sbjct: 60  WNLQKGLSKEDAMNAYISKAKELIEK 85


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,975,970
Number of extensions: 1539760
Number of successful extensions: 8573
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8499
Number of HSP's successfully gapped: 9
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003687
         (1026 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_855685.1| PREDICTED: similar to acyl-Coenzyme A binding d...   294   8e-80
Alignment   gi|XP_548051.2| PREDICTED: similar to acyl-Coenzyme A binding d...   294   8e-80
Alignment   gi|XP_535171.2| PREDICTED: similar to acyl-Coenzyme A binding d...   145   5e-35
Alignment   gi|XP_857382.1| PREDICTED: similar to acyl-Coenzyme A binding d...   145   5e-35
Alignment   gi|XP_848880.1| PREDICTED: similar to acyl-Coenzyme A binding d...   145   5e-35
Alignment   gi|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-C...    76   5e-14
Alignment   gi|NP_001183976.1| acyl-CoA-binding protein [Canis lupus famili...    71   1e-12
Alignment   gi|XP_850165.1| PREDICTED: similar to diazepam binding inhibito...    69   6e-12
Alignment   gi|XP_537152.2| PREDICTED: similar to acyl-Coenzyme A binding d...    65   1e-10
Alignment   gi|XP_537760.2| PREDICTED: similar to endozepine-like peptide [...    62   9e-10

>ref|XP_855685.1| PREDICTED: similar to acyl-Coenzyme A binding domain containing 4
           isoform 2 [Canis familiaris].
          Length = 269

 Score =  294 bits (753), Expect = 8e-80
 Identities = 137/150 (91%), Positives = 145/150 (96%)
 Frame = +2

Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
           MGT++ESPEPD QKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1   MGTKNESPEPDYQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60

Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
           FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLG VA DMF +FEPLY
Sbjct: 61  FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGAVAEDMFAHFEPLY 120

Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
           +VIPDMPRPPETFLRR+TGW+EQVLNGD G
Sbjct: 121 RVIPDMPRPPETFLRRVTGWREQVLNGDVG 150



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 37/88 (42%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
 Frame = +1

Query: 784  DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
            D+P       R  T WR           P     P+    P P    P+  DSEVFCDSL
Sbjct: 125  DMPRPPETFLRRVTGWREQVLNGDVGATPEPPCLPREPEPPSPESQPPRDLDSEVFCDSL 184

Query: 943  EQLEPELVWAEQGSAHGGELDAGTARSL 1026
            EQLEPELVW EQ  A GGE D   +  L
Sbjct: 185  EQLEPELVWTEQKGAPGGEPDTRNSSML 212


>ref|XP_548051.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 4
           isoform 1 [Canis familiaris].
          Length = 300

 Score =  294 bits (753), Expect = 8e-80
 Identities = 137/150 (91%), Positives = 145/150 (96%)
 Frame = +2

Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
           MGT++ESPEPD QKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1   MGTKNESPEPDYQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60

Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
           FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLG VA DMF +FEPLY
Sbjct: 61  FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGAVAEDMFAHFEPLY 120

Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
           +VIPDMPRPPETFLRR+TGW+EQVLNGD G
Sbjct: 121 RVIPDMPRPPETFLRRVTGWREQVLNGDVG 150



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 37/88 (42%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
 Frame = +1

Query: 784  DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
            D+P       R  T WR           P     P+    P P    P+  DSEVFCDSL
Sbjct: 125  DMPRPPETFLRRVTGWREQVLNGDVGATPEPPCLPREPEPPSPESQPPRDLDSEVFCDSL 184

Query: 943  EQLEPELVWAEQGSAHGGELDAGTARSL 1026
            EQLEPELVW EQ  A GGE D   +  L
Sbjct: 185  EQLEPELVWTEQKGAPGGEPDTRNSSML 212


>ref|XP_535171.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5
           isoform 1 [Canis familiaris].
          Length = 515

 Score =  145 bits (367), Expect = 5e-35
 Identities = 64/113 (56%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLARPGFWDPIGRYKWDA 104

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+++T+P+ E   ++     P Y+++ D
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 153


>ref|XP_857382.1| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5
           isoform 4 [Canis familiaris].
          Length = 517

 Score =  145 bits (367), Expect = 5e-35
 Identities = 64/113 (56%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 47  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLARPGFWDPIGRYKWDA 106

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+++T+P+ E   ++     P Y+++ D
Sbjct: 107 WSSLGDMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 155


>ref|XP_848880.1| PREDICTED: similar to acyl-Coenzyme A binding domain containing 5
           isoform 3 [Canis familiaris].
          Length = 526

 Score =  145 bits (367), Expect = 5e-35
 Identities = 64/113 (56%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLARPGFWDPIGRYKWDA 104

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+++T+P+ E   ++     P Y+++ D
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 153


>ref|XP_535873.2| PREDICTED: similar to peroxisomal D3,D2-enoyl-CoA isomerase isoform
           1 [Canis familiaris].
          Length = 659

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 35/77 (45%), Positives = 49/77 (63%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           QK F++A+N ++ L K+    P  E  L+ Y+ YKQ T GPC  PRPG +D I + KWDA
Sbjct: 306 QKDFESAMNQVKLLKKD----PGNEVKLKLYALYKQTTEGPCNTPRPGVFDLINKAKWDA 361

Query: 608 WNSLGKMSREEAMSAYI 658
           WN+LG + +E A   Y+
Sbjct: 362 WNALGNLPKETARQNYV 378


>ref|NP_001183976.1| acyl-CoA-binding protein [Canis lupus familiaris].
          Length = 87

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 36/86 (41%), Positives = 53/86 (61%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q +F  A   +++L      +P+ +EML  YS+YKQATVG     RPG  D  G+ KWDA
Sbjct: 3   QAEFDKAAEDVKHLKT----KPADDEMLYIYSHYKQATVGDINTERPGLLDLRGKAKWDA 58

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
           WN L   S+E+AM AY+ +++ + +K
Sbjct: 59  WNQLKGTSKEDAMKAYVNKVEDLKKK 84


>ref|XP_850165.1| PREDICTED: similar to diazepam binding inhibitor [Canis
           familiaris].
          Length = 127

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 37/99 (37%), Positives = 56/99 (56%)
 Frame = +2

Query: 389 GMGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRP 568
           G   +  +P    Q +F  A   +++L      +P+ +EML  YS+YKQAT+G      P
Sbjct: 30  GKVPKPHNPASMSQAEFDKATEDVKHLET----KPADDEMLFIYSHYKQATIGDVNTEWP 85

Query: 569 GFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
           G  D  G+ KWDAWN L + S+E AM AYI +++ + +K
Sbjct: 86  GLLDLRGKAKWDAWNHLKRTSKENAMKAYINKVEDLKKK 124


>ref|XP_537152.2| PREDICTED: similar to acyl-Coenzyme A binding domain containing 6
           [Canis familiaris].
          Length = 282

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
 Frame = +2

Query: 341 FLQSRSKVGPQGSEQLGMGTES------ESPEPDCQ----KQFQAAVNVIQNLPKNGSYR 490
           FL + +  G  G E L  G +S      +SPE +      + F+ A   +Q L +  S  
Sbjct: 5   FLTAGATTGDSGGE-LSSGDDSGDVESRQSPETEASGSLAELFEQAAAHLQGLVQVASR- 62

Query: 491 PSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMK 670
              E++L  Y+ YKQ  VG C  P+P F+D  G+ KW+AW +LG  S  +AM  YI  +K
Sbjct: 63  ---EQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK 119


>ref|XP_537760.2| PREDICTED: similar to endozepine-like peptide [Canis familiaris].
          Length = 207

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 34/92 (36%), Positives = 50/92 (54%)
 Frame = +2

Query: 410 SPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIG 589
           S  P CQ +F+ A   I+ L        S +E L  YS+YKQAT G C +P P   D   
Sbjct: 117 SAPPMCQVEFEMACAAIKQLKGP----VSDQEKLLVYSFYKQATQGDCNIPAPPATDVKA 172

Query: 590 RYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
           + KW+AWN    MS+ +AM  Y+ +++ + +K
Sbjct: 173 KAKWEAWNQNKGMSKMDAMRIYVAKVEELKKK 204


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,920,811
Number of extensions: 1587470
Number of successful extensions: 8871
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 8819
Number of HSP's successfully gapped: 13
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003687
         (1026 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001129177.1| acyl-CoA-binding domain-containing protein 4...   308   7e-96
Alignment   gi|NP_078998.1| acyl-CoA-binding domain-containing protein 4 is...   308   7e-96
Alignment   gi|NP_001129178.1| acyl-CoA-binding domain-containing protein 4...   333   2e-91
Alignment   gi|NP_001129176.1| acyl-CoA-binding domain-containing protein 4...   333   2e-91
Alignment   gi|NP_001129179.1| acyl-CoA-binding domain-containing protein 4...   308   8e-91
Alignment   gi|NP_001035938.1| acyl-CoA-binding domain-containing protein 5...   146   3e-35
Alignment   gi|NP_663736.2| acyl-CoA-binding domain-containing protein 5 is...   146   3e-35
Alignment   gi|NP_065438.1| acyl-CoA-binding protein isoform 1 [Homo sapien...    77   3e-14
Alignment   gi|NP_001171513.1| acyl-CoA-binding protein isoform 1 [Homo sap...    77   3e-14
Alignment   gi|NP_006108.2| enoyl-CoA delta isomerase 2, mitochondrial isof...    75   1e-13

>ref|NP_001129177.1| acyl-CoA-binding domain-containing protein 4 isoform 2 [Homo
           sapiens].
          Length = 305

 Score =  308 bits (788), Expect(2) = 7e-96
 Identities = 143/150 (95%), Positives = 147/150 (98%)
 Frame = +2

Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
           MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1   MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60

Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
           FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61  FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120

Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
           QVIPDMPRPPETFLRR+TGWKEQV+NGD G
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVG 150



 Score = 62.4 bits (150), Expect(2) = 7e-96
 Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
 Frame = +1

Query: 853  TSPP--PQGTSTPKPRVPAPQGQDSEVFCDSLEQLEPELVWAEQGSAHGGELD 1005
            + PP  P+  + P P   +P+  DSEVFCDSLEQLEPELVW EQ +A GG+ D
Sbjct: 153  SEPPCLPKEPAPPSPESHSPRDLDSEVFCDSLEQLEPELVWTEQRAASGGKRD 205


>ref|NP_078998.1| acyl-CoA-binding domain-containing protein 4 isoform 2 [Homo
           sapiens].
          Length = 305

 Score =  308 bits (788), Expect(2) = 7e-96
 Identities = 143/150 (95%), Positives = 147/150 (98%)
 Frame = +2

Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
           MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1   MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60

Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
           FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61  FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120

Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
           QVIPDMPRPPETFLRR+TGWKEQV+NGD G
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVG 150



 Score = 62.4 bits (150), Expect(2) = 7e-96
 Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
 Frame = +1

Query: 853  TSPP--PQGTSTPKPRVPAPQGQDSEVFCDSLEQLEPELVWAEQGSAHGGELD 1005
            + PP  P+  + P P   +P+  DSEVFCDSLEQLEPELVW EQ +A GG+ D
Sbjct: 153  SEPPCLPKEPAPPSPESHSPRDLDSEVFCDSLEQLEPELVWTEQRAASGGKRD 205


>ref|NP_001129178.1| acyl-CoA-binding domain-containing protein 4 isoform 1 [Homo
            sapiens].
          Length = 341

 Score =  333 bits (853), Expect = 2e-91
 Identities = 165/219 (75%), Positives = 171/219 (78%), Gaps = 13/219 (5%)
 Frame = +2

Query: 392  MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
            MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1    MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60

Query: 572  FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
            FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61   FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120

Query: 752  QVIPDMPRPPETFLRRITGWKEQVLNGDAG-------------XXXXXXXXXXXXXXXXX 892
            QVIPDMPRPPETFLRR+TGWKEQV+NGD G                              
Sbjct: 121  QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180

Query: 893  XXXXXRDRTLKFSVIPWSSWSLSWFGQSRGVPMGESSTP 1009
                    T +FSVIPWSSWSLSWFGQS G  + ES  P
Sbjct: 181  SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIP 219


>ref|NP_001129176.1| acyl-CoA-binding domain-containing protein 4 isoform 1 [Homo
            sapiens].
          Length = 341

 Score =  333 bits (853), Expect = 2e-91
 Identities = 165/219 (75%), Positives = 171/219 (78%), Gaps = 13/219 (5%)
 Frame = +2

Query: 392  MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
            MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1    MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60

Query: 572  FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
            FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61   FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120

Query: 752  QVIPDMPRPPETFLRRITGWKEQVLNGDAG-------------XXXXXXXXXXXXXXXXX 892
            QVIPDMPRPPETFLRR+TGWKEQV+NGD G                              
Sbjct: 121  QVIPDMPRPPETFLRRVTGWKEQVVNGDVGAVSEPPCLPKEPAPPSPASLWAVTLPTPPQ 180

Query: 893  XXXXXRDRTLKFSVIPWSSWSLSWFGQSRGVPMGESSTP 1009
                    T +FSVIPWSSWSLSWFGQS G  + ES  P
Sbjct: 181  SPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIP 219


>ref|NP_001129179.1| acyl-CoA-binding domain-containing protein 4 isoform 3 [Homo
           sapiens].
          Length = 268

 Score =  308 bits (788), Expect(2) = 8e-91
 Identities = 143/150 (95%), Positives = 147/150 (98%)
 Frame = +2

Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
           MGTE ESPEPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1   MGTEKESPEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 60

Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
           FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 61  FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 120

Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
           QVIPDMPRPPETFLRR+TGWKEQV+NGD G
Sbjct: 121 QVIPDMPRPPETFLRRVTGWKEQVVNGDVG 150



 Score = 45.4 bits (106), Expect(2) = 8e-91
 Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
 Frame = +1

Query: 853 TSPP--PQGTSTPKPRVPAPQGQDSEVFCDSLEQLEPEL 963
           + PP  P+  + P P   +P+  DSEVFCDSLEQLEPEL
Sbjct: 153 SEPPCLPKEPAPPSPESHSPRDLDSEVFCDSLEQLEPEL 191


>ref|NP_001035938.1| acyl-CoA-binding domain-containing protein 5 isoform 2 [Homo
           sapiens].
          Length = 490

 Score =  146 bits (369), Expect = 3e-35
 Identities = 65/113 (57%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 9   ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 68

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+I+T+P+ E   ++     P Y+++ D
Sbjct: 69  WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLRVIGPFYEIVED 117


>ref|NP_663736.2| acyl-CoA-binding domain-containing protein 5 isoform 1 [Homo
           sapiens].
          Length = 525

 Score =  146 bits (369), Expect = 3e-35
 Identities = 65/113 (57%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 44  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 103

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+I+T+P+ E   ++     P Y+++ D
Sbjct: 104 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLRVIGPFYEIVED 152


>ref|NP_065438.1| acyl-CoA-binding protein isoform 1 [Homo sapiens].
          Length = 104

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 44/106 (41%), Positives = 59/106 (55%)
 Frame = +2

Query: 368 PQGSEQLGMGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVG 547
           P  S   G GTE+E         F+ A   +++L      +PS EEML  Y +YKQATVG
Sbjct: 9   PPASANPGTGTEAE---------FEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVG 55

Query: 548 PCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
                RPG  D  G+ KWDAWN L   S+E+AM AYI +++ + +K
Sbjct: 56  DINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKK 101


>ref|NP_001171513.1| acyl-CoA-binding protein isoform 1 [Homo sapiens].
          Length = 104

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 44/106 (41%), Positives = 59/106 (55%)
 Frame = +2

Query: 368 PQGSEQLGMGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVG 547
           P  S   G GTE+E         F+ A   +++L      +PS EEML  Y +YKQATVG
Sbjct: 9   PPASANPGTGTEAE---------FEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVG 55

Query: 548 PCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
                RPG  D  G+ KWDAWN L   S+E+AM AYI +++ + +K
Sbjct: 56  DINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKK 101


>ref|NP_006108.2| enoyl-CoA delta isomerase 2, mitochondrial isoform 1 [Homo
           sapiens].
          Length = 364

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 34/77 (44%), Positives = 50/77 (64%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           QK F+ ++N ++ L K+    P  E  L+ Y+ YKQAT GPC +P+PG +D I + KWDA
Sbjct: 10  QKDFENSMNQVKLLKKD----PGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDA 65

Query: 608 WNSLGKMSREEAMSAYI 658
           WN+LG + +E A   Y+
Sbjct: 66  WNALGSLPKEAARQNYV 82


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,798,288
Number of extensions: 1532731
Number of successful extensions: 8419
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 8358
Number of HSP's successfully gapped: 24
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003687
         (1026 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080264.1| acyl-Coenzyme A binding domain containing 4 iso...   281   8e-76
Alignment   gi|NP_001095908.1| acyl-CoA-binding domain-containing protein 5...   146   2e-35
Alignment   gi|NP_001095907.1| acyl-CoA-binding domain-containing protein 5...   146   2e-35
Alignment   gi|NP_001095906.1| acyl-CoA-binding domain-containing protein 5...   146   2e-35
Alignment   gi|NP_083069.1| acyl-CoA-binding domain-containing protein 5 is...   146   2e-35
Alignment   gi|NP_001103802.1| enoyl-CoA delta isomerase 2, mitochondrial i...    74   2e-13
Alignment   gi|NP_035998.2| enoyl-CoA delta isomerase 2, mitochondrial isof...    74   2e-13
Alignment   gi|NP_001103801.1| enoyl-CoA delta isomerase 2, mitochondrial i...    74   2e-13
Alignment   gi|NP_031856.1| acyl-CoA-binding protein isoform 2 [Mus musculu...    66   5e-11
Alignment   gi|NP_001033088.1| acyl-CoA-binding protein isoform 1 [Mus musc...    65   9e-11

>ref|NP_080264.1| acyl-Coenzyme A binding domain containing 4 isoform 1 [Mus
           musculus].
          Length = 329

 Score =  281 bits (718), Expect = 8e-76
 Identities = 133/145 (91%), Positives = 138/145 (95%)
 Frame = +2

Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
           MGTE E  EPDCQKQFQAAV+VIQNLPKNGSYRPSYEEMLRFYSYYKQAT+GPCLVPRPG
Sbjct: 1   MGTEKE--EPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPG 58

Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
           FWDPIGRYKWDAWN LGKMSREEAMSAYI+EMKLVAQKVIDTVPLGEVA DMFGYFEPLY
Sbjct: 59  FWDPIGRYKWDAWNRLGKMSREEAMSAYISEMKLVAQKVIDTVPLGEVAEDMFGYFEPLY 118

Query: 752 QVIPDMPRPPETFLRRITGWKEQVL 826
           QVIPDMPRPPETFLRR TGWKE ++
Sbjct: 119 QVIPDMPRPPETFLRRATGWKEPLV 143


>ref|NP_001095908.1| acyl-CoA-binding domain-containing protein 5 isoform b [Mus
           musculus].
          Length = 508

 Score =  146 bits (369), Expect = 2e-35
 Identities = 65/113 (57%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+I+T+P+ E   ++     P Y+++ D
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLHVIGPFYEIVED 153


>ref|NP_001095907.1| acyl-CoA-binding domain-containing protein 5 isoform a [Mus
           musculus].
          Length = 509

 Score =  146 bits (369), Expect = 2e-35
 Identities = 65/113 (57%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+I+T+P+ E   ++     P Y+++ D
Sbjct: 105 WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLHVIGPFYEIVED 153


>ref|NP_001095906.1| acyl-CoA-binding domain-containing protein 5 isoform d [Mus
           musculus].
          Length = 472

 Score =  146 bits (369), Expect = 2e-35
 Identities = 65/113 (57%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 9   ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 68

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+I+T+P+ E   ++     P Y+++ D
Sbjct: 69  WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLHVIGPFYEIVED 117


>ref|NP_083069.1| acyl-CoA-binding domain-containing protein 5 isoform c [Mus
           musculus].
          Length = 473

 Score =  146 bits (369), Expect = 2e-35
 Identities = 65/113 (57%), Positives = 88/113 (77%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 9   ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 68

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           W+SLG M++EEAM AY+ EMK    K+I+T+P+ E   ++     P Y+++ D
Sbjct: 69  WSSLGDMTKEEAMIAYVEEMK----KIIETMPMTEKVEELLHVIGPFYEIVED 117


>ref|NP_001103802.1| enoyl-CoA delta isomerase 2, mitochondrial isoform b [Mus
           musculus].
          Length = 358

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 34/77 (44%), Positives = 49/77 (63%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q+ F+ A+N ++ L K+    P  E  LR Y+ YKQAT GPC +P+PG  D + + KWDA
Sbjct: 5   QQDFENALNQVKLLKKD----PGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDA 60

Query: 608 WNSLGKMSREEAMSAYI 658
           WN+LG + +E A   Y+
Sbjct: 61  WNALGSLPKETARQNYV 77


>ref|NP_035998.2| enoyl-CoA delta isomerase 2, mitochondrial isoform b [Mus
           musculus].
          Length = 358

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 34/77 (44%), Positives = 49/77 (63%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q+ F+ A+N ++ L K+    P  E  LR Y+ YKQAT GPC +P+PG  D + + KWDA
Sbjct: 5   QQDFENALNQVKLLKKD----PGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDA 60

Query: 608 WNSLGKMSREEAMSAYI 658
           WN+LG + +E A   Y+
Sbjct: 61  WNALGSLPKETARQNYV 77


>ref|NP_001103801.1| enoyl-CoA delta isomerase 2, mitochondrial isoform a [Mus
           musculus].
          Length = 391

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 34/77 (44%), Positives = 49/77 (63%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q+ F+ A+N ++ L K+    P  E  LR Y+ YKQAT GPC +P+PG  D + + KWDA
Sbjct: 38  QQDFENALNQVKLLKKD----PGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDA 93

Query: 608 WNSLGKMSREEAMSAYI 658
           WN+LG + +E A   Y+
Sbjct: 94  WNALGSLPKETARQNYV 110


>ref|NP_031856.1| acyl-CoA-binding protein isoform 2 [Mus musculus].
          Length = 87

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 34/86 (39%), Positives = 49/86 (56%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q +F  A   ++ L      +P+ EEML  YS++KQATVG     RPG  D  G+ KWD+
Sbjct: 3   QAEFDKAAEEVKRLKT----QPTDEEMLFIYSHFKQATVGDVNTDRPGLLDLKGKAKWDS 58

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
           WN L   S+E AM  Y+ ++  + +K
Sbjct: 59  WNKLKGTSKESAMKTYVEKVDELKKK 84


>ref|NP_001033088.1| acyl-CoA-binding protein isoform 1 [Mus musculus].
          Length = 135

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 37/97 (38%), Positives = 52/97 (53%)
 Frame = +2

Query: 395 GTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGF 574
           GT  E P      +F  A   ++ L      +P+ EEML  YS++KQATVG     RPG 
Sbjct: 45  GTARELPA-----EFDKAAEEVKRLKT----QPTDEEMLFIYSHFKQATVGDVNTDRPGL 95

Query: 575 WDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
            D  G+ KWD+WN L   S+E AM  Y+ ++  + +K
Sbjct: 96  LDLKGKAKWDSWNKLKGTSKESAMKTYVEKVDELKKK 132


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,995,340
Number of extensions: 1257277
Number of successful extensions: 6820
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6747
Number of HSP's successfully gapped: 16
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003687
         (1026 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003358059.1| PREDICTED: acyl-CoA-binding domain-containin...   318   2e-87
Alignment   gi|XP_003131372.1| PREDICTED: acyl-CoA-binding domain-containin...   318   2e-87
Alignment   gi|XP_003130802.2| PREDICTED: acyl-CoA-binding domain-containin...   148   4e-36
Alignment   gi|NP_999284.1| acyl-CoA-binding protein [Sus scrofa].                75   8e-14
Alignment   gi|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [...    69   4e-12
Alignment   gi|XP_003357610.1| PREDICTED: acyl-CoA-binding domain-containin...    67   1e-11
Alignment   gi|XP_003130396.2| PREDICTED: acyl-CoA-binding domain-containin...    67   1e-11
Alignment   gi|XP_003358615.1| PREDICTED: acyl-CoA-binding protein-like [Su...    63   2e-10
Alignment   gi|XP_003131864.1| PREDICTED: diazepam-binding inhibitor-like 5...    59   4e-09
Alignment   gi|XP_003357793.1| PREDICTED: acyl-CoA-binding domain-containin...    57   2e-08

>ref|XP_003358059.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like
           isoform 2 [Sus scrofa].
          Length = 304

 Score =  318 bits (816), Expect = 2e-87
 Identities = 150/150 (100%), Positives = 150/150 (100%)
 Frame = +2

Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
           MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG
Sbjct: 1   MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 60

Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
           FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY
Sbjct: 61  FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 120

Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
           QVIPDMPRPPETFLRRITGWKEQVLNGDAG
Sbjct: 121 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 150



 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 42/82 (51%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
 Frame = +1

Query: 784  DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
            D+P       R  T W+           P     P+  + P P    P+ QDSEVFCDSL
Sbjct: 125  DMPRPPETFLRRITGWKEQVLNGDAGAAPEPPRLPKEPAPPSPESQPPRDQDSEVFCDSL 184

Query: 943  EQLEPELVWAEQGSAHGGELDA 1008
            EQLEPELVWAEQGSAHGGELDA
Sbjct: 185  EQLEPELVWAEQGSAHGGELDA 206


>ref|XP_003131372.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like
           isoform 1 [Sus scrofa].
          Length = 269

 Score =  318 bits (816), Expect = 2e-87
 Identities = 150/150 (100%), Positives = 150/150 (100%)
 Frame = +2

Query: 392 MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 571
           MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG
Sbjct: 1   MGTESESPEPDCQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPG 60

Query: 572 FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 751
           FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY
Sbjct: 61  FWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLY 120

Query: 752 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 841
           QVIPDMPRPPETFLRRITGWKEQVLNGDAG
Sbjct: 121 QVIPDMPRPPETFLRRITGWKEQVLNGDAG 150



 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 42/82 (51%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
 Frame = +1

Query: 784  DLPEKDHRLERAGTEWR-------CWGCPRTSPPPQGTSTPKPRVPAPQGQDSEVFCDSL 942
            D+P       R  T W+           P     P+  + P P    P+ QDSEVFCDSL
Sbjct: 125  DMPRPPETFLRRITGWKEQVLNGDAGAAPEPPRLPKEPAPPSPESQPPRDQDSEVFCDSL 184

Query: 943  EQLEPELVWAEQGSAHGGELDA 1008
            EQLEPELVWAEQGSAHGGELDA
Sbjct: 185  EQLEPELVWAEQGSAHGGELDA 206


>ref|XP_003130802.2| PREDICTED: acyl-CoA-binding domain-containing protein 5 [Sus
           scrofa].
          Length = 520

 Score =  148 bits (374), Expect = 4e-36
 Identities = 65/113 (57%), Positives = 89/113 (78%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           + +F+AAV VIQ+LPKNGS++P+ E ML+FYS+YKQAT GPC + RPGFWDPIGRYKWDA
Sbjct: 45  ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 104

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAGDMFGYFEPLYQVIPD 766
           WNSLG+M++EEAM AY+ EMK    K+++T+P+ E   ++     P Y+++ D
Sbjct: 105 WNSLGEMTKEEAMIAYVEEMK----KILETMPMTEKVEELLHVIGPFYEIVED 153


>ref|NP_999284.1| acyl-CoA-binding protein [Sus scrofa].
          Length = 87

 Score = 74.7 bits (182), Expect = 8e-14
 Identities = 38/86 (44%), Positives = 54/86 (62%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q +F+ A   ++NL      +P+ +EML  YS+YKQATVG     RPG  D  G+ KWDA
Sbjct: 3   QAEFEKAAEEVKNLKT----KPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDA 58

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
           WN L   S+E+AM AYI +++ + +K
Sbjct: 59  WNGLKGTSKEDAMKAYINKVEELKKK 84


>ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa].
          Length = 394

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 33/77 (42%), Positives = 47/77 (61%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q+ F  A+N ++ L ++    P  E  L+ Y+ YKQAT GPC  P+PG  D I + KWDA
Sbjct: 42  QEDFAKAMNQVKLLKED----PGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDA 97

Query: 608 WNSLGKMSREEAMSAYI 658
           WN+LG + +E A   Y+
Sbjct: 98  WNALGNLPKETARQNYV 114


>ref|XP_003357610.1| PREDICTED: acyl-CoA-binding domain-containing protein 6-like
           isoform 2 [Sus scrofa].
          Length = 265

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
 Frame = +2

Query: 341 FLQSRSKVGPQGSEQLGMGTES------ESPEPDCQKQ----FQAAVNVIQNLPKNGSYR 490
           FL S +  G  G E L  G +S      +SPE +  +     F+ A   +Q L +  S  
Sbjct: 5   FLPSGATTGDSGGE-LSSGDDSGDAESLQSPETEASRSLTELFEKAAAHLQGLVQVASR- 62

Query: 491 PSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMK 670
              E++L  Y+ YKQ  VG C  P+P F+D  G+ KW+AW +LG  S  +AM  YI  +K
Sbjct: 63  ---EQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK 119


>ref|XP_003130396.2| PREDICTED: acyl-CoA-binding domain-containing protein 6-like
           isoform 1 [Sus scrofa].
          Length = 282

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
 Frame = +2

Query: 341 FLQSRSKVGPQGSEQLGMGTES------ESPEPDCQKQ----FQAAVNVIQNLPKNGSYR 490
           FL S +  G  G E L  G +S      +SPE +  +     F+ A   +Q L +  S  
Sbjct: 5   FLPSGATTGDSGGE-LSSGDDSGDAESLQSPETEASRSLTELFEKAAAHLQGLVQVASR- 62

Query: 491 PSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMK 670
              E++L  Y+ YKQ  VG C  P+P F+D  G+ KW+AW +LG  S  +AM  YI  +K
Sbjct: 63  ---EQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVK 119


>ref|XP_003358615.1| PREDICTED: acyl-CoA-binding protein-like [Sus scrofa].
          Length = 159

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
 Frame = +2

Query: 353 RSKVGPQGSEQLGMGTESESPEPDC------QKQFQAAVNVIQNLPKNGSYRPSYEEMLR 514
           RS +G   S    +   S++P   C      Q +F+ A    +NL      +P+ +EML 
Sbjct: 44  RSSLGSPASVIRKVILTSQAPWNRCNPASMSQAEFEKAAEEAKNLKT----KPADDEMLF 99

Query: 515 FYSYYKQATVGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQK 685
              +YKQATVG     +PG  D  G+ KWDAWN L   S+E+AM A+  +++ + +K
Sbjct: 100 ISGHYKQATVGDINTKQPGILDLKGKAKWDAWNGLTWTSKEDAMKAHSNKVEELKKK 156


>ref|XP_003131864.1| PREDICTED: diazepam-binding inhibitor-like 5-like [Sus scrofa].
          Length = 87

 Score = 58.9 bits (141), Expect = 4e-09
 Identities = 31/82 (37%), Positives = 45/82 (54%)
 Frame = +2

Query: 425 CQKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWD 604
           CQ +F+ A   I+ L    S +    E L  YS+YKQAT G C +P P   D   + KW+
Sbjct: 2   CQVEFEMACAAIKQLKGPVSDK----EKLLVYSFYKQATQGDCNIPAPSATDVKAKAKWE 57

Query: 605 AWNSLGKMSREEAMSAYITEMK 670
           AWN    MS+ +AM  Y+ +++
Sbjct: 58  AWNGNKGMSKMDAMRLYVAKVE 79


>ref|XP_003357793.1| PREDICTED: acyl-CoA-binding domain-containing protein 7-like [Sus
           scrofa].
          Length = 88

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 30/86 (34%), Positives = 46/86 (53%)
 Frame = +2

Query: 428 QKQFQAAVNVIQNLPKNGSYRPSYEEMLRFYSYYKQATVGPCLVPRPGFWDPIGRYKWDA 607
           Q  F  A   ++ L      RP  +E+   Y  YKQ+ +G   +  P   D  G+ KW+A
Sbjct: 4   QADFDKATEDVRKLKT----RPDDQELKELYGLYKQSIIGDIDIECPAMIDLKGKAKWEA 59

Query: 608 WNSLGKMSREEAMSAYITEMKLVAQK 685
           WN    +S+E+AMSAYI++ K + +K
Sbjct: 60  WNFQKGLSKEDAMSAYISKAKELIEK 85


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,438,752
Number of extensions: 1002170
Number of successful extensions: 5607
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5557
Number of HSP's successfully gapped: 12
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003687
         (1026 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                         799   0.0  

>Sscrofa_Chr12 
||          Length = 63588571

 Score =  799 bits (403), Expect = 0.0
 Identities = 403/403 (100%)
 Strand = Plus / Minus

                                                                            
Query: 78       aggagaattgtatctaggggttcactgtgacccttgccacctgcctctccacccacaccc 137
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528614 aggagaattgtatctaggggttcactgtgacccttgccacctgcctctccacccacaccc 18528555

                                                                            
Query: 138      gaggttctctccgtcgagcctggtcccacccacgctgcctcggcgtggggcaaggagtct 197
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528554 gaggttctctccgtcgagcctggtcccacccacgctgcctcggcgtggggcaaggagtct 18528495

                                                                            
Query: 198      cctcggccgcacctcctgacttcccgcggcatctcactcaggcctccgaagagcttagtt 257
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528494 cctcggccgcacctcctgacttcccgcggcatctcactcaggcctccgaagagcttagtt 18528435

                                                                            
Query: 258      tgcccccctggagagtggaccgctggcttggaggtgtgtgcccgggagcgggggaccctg 317
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528434 tgcccccctggagagtggaccgctggcttggaggtgtgtgcccgggagcgggggaccctg 18528375

                                                                            
Query: 318      ggggcctgctcacaacaggcttgttcttgcagagtcgctcaaaagtagggccccagggct 377
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528374 ggggcctgctcacaacaggcttgttcttgcagagtcgctcaaaagtagggccccagggct 18528315

                                                                            
Query: 378      cggagcagctgggtatgggtactgagagtgaaagtccagaaccggactgccagaaacagt 437
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528314 cggagcagctgggtatgggtactgagagtgaaagtccagaaccggactgccagaaacagt 18528255

                                                           
Query: 438      tccaggctgcagtcaacgtcattcagaacctgcctaagaacgg 480
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528254 tccaggctgcagtcaacgtcattcagaacctgcctaagaacgg 18528212



 Score =  248 bits (125), Expect = 5e-63
 Identities = 125/125 (100%)
 Strand = Plus / Minus

                                                                            
Query: 684      aggtgatcgacacggtgcctctgggcgaagtggcaggggacatgtttggttacttcgagc 743
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527403 aggtgatcgacacggtgcctctgggcgaagtggcaggggacatgtttggttacttcgagc 18527344

                                                                            
Query: 744      ccctgtaccaggtgatccctgacatgccgaggcccccagagaccttcctgagaaggatca 803
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527343 ccctgtaccaggtgatccctgacatgccgaggcccccagagaccttcctgagaaggatca 18527284

                     
Query: 804      caggt 808
                |||||
Sbjct: 18527283 caggt 18527279



 Score =  244 bits (123), Expect = 8e-62
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                            
Query: 479      ggctcttaccgcccatcctacgaagagatgctgcgattctacagctactacaagcaggct 538
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527952 ggctcttaccgcccatcctacgaagagatgctgcgattctacagctactacaagcaggct 18527893

                                                                            
Query: 539      accgtgggtccctgcctggtcccccggcctgggttctgggaccctattggacgttataaa 598
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527892 accgtgggtccctgcctggtcccccggcctgggttctgggaccctattggacgttataaa 18527833

                   
Query: 599      tgg 601
                |||
Sbjct: 18527832 tgg 18527830



 Score =  174 bits (88), Expect = 6e-41
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                            
Query: 600      gggacgcctggaacagcctgggcaagatgagcagggaggaggccatgtctgcctacatca 659
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527760 gggacgcctggaacagcctgggcaagatgagcagggaggaggccatgtctgcctacatca 18527701

                                            
Query: 660      ctgagatgaagctggtggcacagaaggt 687
                ||||||||||||||||||||||||||||
Sbjct: 18527700 ctgagatgaagctggtggcacagaaggt 18527673



 Score =  159 bits (80), Expect = 4e-36
 Identities = 80/80 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        gactcgccccggaggtcagtcggcaacctctgtgcggggggctgggaaacccaggtgtcc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18528796 gactcgccccggaggtcagtcggcaacctctgtgcggggggctgggaaacccaggtgtcc 18528737

                                    
Query: 61       aggcagtgggcattgcaagg 80
                ||||||||||||||||||||
Sbjct: 18528736 aggcagtgggcattgcaagg 18528717



 Score =  113 bits (57), Expect = 2e-22
 Identities = 64/65 (98%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                            
Query: 963      ggtttgggcagagcaggggagtgcccatgggggagagctcgacgcc-ggaacagcccgga 1021
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 18526502 ggtttgggcagagcaggggagtgcccatgggggagagctcgacgccaggaacagcccgga 18526443

                     
Query: 1022     gcctc 1026
                |||||
Sbjct: 18526442 gcctc 18526438



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                     
Query: 913      caggactctgaagttttctgtgattccctggagcagctggagcctgagctggt 965
                ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18526649 caggactctgaggttttttgtgattccctggagcagctggagcctgagctggt 18526597



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                         
Query: 804      caggttggaaagagcaggtactgaatggagatgctggggct 844
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18527064 caggttggaaagagcaggtactgaatggagatgctggggct 18527024


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,100,375
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 8
Length of query: 1026
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1005
Effective length of database: 2,808,413,156
Effective search space: 2822455221780
Effective search space used: 2822455221780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)