Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003696
(1105 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069458.1| proteasomal ATPase-associated factor 1 [Bos ... 672 0.0
Alignment gi|NP_001178407.1| transcription initiation factor TFIID subuni... 79 5e-15
Alignment gi|NP_001091030.1| guanine nucleotide-binding protein G(I)/G(S)... 79 5e-15
Alignment gi|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box ... 79 5e-15
Alignment gi|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus]. 77 2e-14
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 75 1e-13
Alignment gi|NP_786971.2| guanine nucleotide-binding protein G(I)/G(S)/G(... 75 1e-13
Alignment gi|NP_001040084.1| transducin beta-like protein 3 [Bos taurus]. 74 2e-13
Alignment gi|NP_001092503.1| guanine nucleotide-binding protein subunit b... 74 2e-13
Alignment gi|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos ta... 70 3e-12
>ref|NP_001069458.1| proteasomal ATPase-associated factor 1 [Bos taurus].
Length = 392
Score = 672 bits (1733), Expect = 0.0
Identities = 331/361 (91%), Positives = 337/361 (93%)
Frame = +3
Query: 21 MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIGLDGIPEVIASEGFVVN 200
MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIGLDGIPEV ASEGF+VN
Sbjct: 1 MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIGLDGIPEVTASEGFIVN 60
Query: 201 EINKKSIHISCPKENASSKFLAPYTTFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQ 380
EINKKSIH+SCPKEN SSKFLAPYTTFSRIH KSITCLDI MKIWQ
Sbjct: 61 EINKKSIHVSCPKENVSSKFLAPYTTFSRIHTKSITCLDISSGGGLGVSSSADGSMKIWQ 120
Query: 381 ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL 560
ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL
Sbjct: 121 ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL 180
Query: 561 DTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQ 740
DTAIV+RGKNVVSGSRDGTARLWDCGRSACLGVIADCG SINGVAVGAADNSINLGSPEQ
Sbjct: 181 DTAIVDRGKNVVSGSRDGTARLWDCGRSACLGVIADCGSSINGVAVGAADNSINLGSPEQ 240
Query: 741 TPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQD 920
PSEREVGTESKMLLLAREDKKLQC+GLQSRQP+FLFIGSDAFNCCTFLSGFLLLAGTQD
Sbjct: 241 MPSEREVGTESKMLLLAREDKKLQCLGLQSRQPLFLFIGSDAFNCCTFLSGFLLLAGTQD 300
Query: 921 GNIYQLDVRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFIVQQDLDYVIELTGD 1100
GNIYQLDVRNPR PVQVIHRS APV+SLLSFRDGFIASQGDGS FIVQQDLDYVIELTG
Sbjct: 301 GNIYQLDVRNPRTPVQVIHRSGAPVMSLLSFRDGFIASQGDGSCFIVQQDLDYVIELTGA 360
Query: 1101 D 1103
D
Sbjct: 361 D 361
>ref|NP_001178407.1| transcription initiation factor TFIID subunit 5 [Bos taurus].
Length = 800
Score = 79.3 bits (194), Expect = 5e-15
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
++W + + R+ GH+ DVNC RF P+ V +G D +++W + +CV F GHK
Sbjct: 610 RLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHK 669
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVI---ADCGCSING------VAVG 701
G I G+ + +G+ DG LWD G +G + D CS+ +A G
Sbjct: 670 GPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASG 729
Query: 702 AADNSINL 725
+ DN++ L
Sbjct: 730 SMDNTVRL 737
Score = 61.6 bits (148), Expect = 1e-09
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Frame = +3
Query: 402 RVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVER 581
++L GH V F P +LS D +++WS + +C+V +KGH + DT
Sbjct: 537 KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 596
Query: 582 GKNVVSGSRDGTARLWDCGRSACL----GVIADCGC-----SINGVAVGAADNSINL 725
G VSG D ARLW L G +AD C + N VA G+AD ++ L
Sbjct: 597 GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653
Score = 50.8 bits (120), Expect = 2e-06
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+++W +GH + V +F P G +SGG D ++W+ + + F GH
Sbjct: 567 VRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH 626
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACL-------GVIADCGCSING--VAV 698
+ T V +GS D T RLWD C+ G I S NG +A
Sbjct: 627 LADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLAT 686
Query: 699 GAADNSINL 725
GA D + L
Sbjct: 687 GATDGRVLL 695
>ref|NP_001091030.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Bos
taurus].
Length = 340
Score = 79.3 bits (194), Expect = 5e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF ++ S G D +W E V F GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ G+ VSG+ D + +LWD S C IN VA + GS + T
Sbjct: 191 SLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++L+ + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLMYSHDN-------------IICGITSVAFS----RSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNIWDAMKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 168 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 228 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 320
>ref|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 100kDa [Bos taurus].
Length = 800
Score = 79.3 bits (194), Expect = 5e-15
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
++W + + R+ GH+ DVNC RF P+ V +G D +++W + +CV F GHK
Sbjct: 610 RLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHK 669
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVI---ADCGCSING------VAVG 701
G I G+ + +G+ DG LWD G +G + D CS+ +A G
Sbjct: 670 GPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASG 729
Query: 702 AADNSINL 725
+ DN++ L
Sbjct: 730 SMDNTVRL 737
Score = 61.6 bits (148), Expect = 1e-09
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Frame = +3
Query: 402 RVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVER 581
++L GH V F P +LS D +++WS + +C+V +KGH + DT
Sbjct: 537 KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 596
Query: 582 GKNVVSGSRDGTARLWDCGRSACL----GVIADCGC-----SINGVAVGAADNSINL 725
G VSG D ARLW L G +AD C + N VA G+AD ++ L
Sbjct: 597 GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653
Score = 50.8 bits (120), Expect = 2e-06
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+++W +GH + V +F P G +SGG D ++W+ + + F GH
Sbjct: 567 VRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH 626
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACL-------GVIADCGCSING--VAV 698
+ T V +GS D T RLWD C+ G I S NG +A
Sbjct: 627 LADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLAT 686
Query: 699 GAADNSINL 725
GA D + L
Sbjct: 687 GATDGRVLL 695
>ref|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].
Length = 330
Score = 77.4 bits (189), Expect = 2e-14
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 5/194 (2%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+KIW +G+ + L+GH V CC F P +++SG D +KIW + C+ T H
Sbjct: 107 LKIWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDESVKIWEVKTGKCLKTLSAH 166
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINL 725
+ G +VSGS DG R+WD CL + D D++ +
Sbjct: 167 SDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQCLKALVD-------------DDNPPV 213
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLS----- 890
+ +P+ K +L+A D L+ + + + G C F S
Sbjct: 214 SFVKFSPN-------GKYILIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCVFASFSVTG 266
Query: 891 GFLLLAGTQDGNIY 932
G +++G++D +Y
Sbjct: 267 GKWIVSGSEDNLVY 280
Score = 60.5 bits (145), Expect = 3e-09
Identities = 50/179 (27%), Positives = 71/179 (39%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N L+ LEGH V+ +F P+G + S D + IW A D T KGH I D
Sbjct: 30 NYALKFTLEGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTLKGHNLEISDV 89
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
A +VS S D T ++WD CL + + N I GS +++
Sbjct: 90 AWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDESV 149
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDG 923
EV T + L+ + V FNC SG L+++G+ DG
Sbjct: 150 KIWEVKTGKCLKTLSAHSDPVSAV---------------HFNC----SGSLIVSGSYDG 189
Score = 56.2 bits (134), Expect = 5e-08
Identities = 29/120 (24%), Positives = 53/120 (44%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
IW A +G+ + L+GH +++ + ++S D LKIW C+ T KGH
Sbjct: 67 IWGAYDGKYEKTLKGHNLEISDVAWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSN 126
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGS 731
+ ++SGS D + ++W+ CL ++ ++ V + + I GS
Sbjct: 127 YVFCCNFNPPSNLIISGSFDESVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGS 186
Score = 52.4 bits (124), Expect = 7e-07
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +3
Query: 369 KIWQASNGE-LRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+IW A++G+ L+ +++ V+ +F P+G +L +D LK+W C+ T+ GH
Sbjct: 192 RIWDAASGQCLKALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGH 251
Query: 546 KGG---ILDTAIVERGKNVVSGSRDGTARLWD 632
K + + V GK +VSGS D +W+
Sbjct: 252 KNEKYCVFASFSVTGGKWIVSGSEDNLVYIWN 283
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 75.1 bits (183), Expect = 1e-13
Identities = 33/101 (32%), Positives = 49/101 (48%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+KIW S+G+ + L+GH V CC F P +++SG D ++IW + C+ T H
Sbjct: 111 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIAD 668
+ G +VS S DG R+WD CL + D
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Score = 61.2 bits (147), Expect = 2e-09
Identities = 30/121 (24%), Positives = 51/121 (42%)
Frame = +3
Query: 291 HAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVL 470
H K+++ + +KIW A +G+ + + GH ++ + +++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 471 SGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARLWDCGRSAC 650
S D LKIW C+ T KGH + + +VSGS D + R+WD C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 651 L 653
L
Sbjct: 164 L 164
Score = 59.3 bits (142), Expect = 6e-09
Identities = 33/89 (37%), Positives = 42/89 (47%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N L+ L GH V+ +F P+G + S D +KIW A D T GHK GI D
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACL 653
A +VS S D T ++WD CL
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCL 122
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 369 KIWQASNGE-LRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+IW ++G+ L+ +++ V+ +F P+G +L+ +D LK+W C+ T+ GH
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 546 KGG---ILDTAIVERGKNVVSGSRDGTARLWD 632
K I V GK +VSGS D +W+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
>ref|NP_786971.2| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Bos
taurus].
Length = 340
Score = 74.7 bits (182), Expect = 1e-13
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF +V S G D +W E TF GH G ++
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ + VSG+ D +A+LWD C IN + N+ GS + T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT- 249
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
L R D++L S + I S +F+ SG LLLAG D N
Sbjct: 250 ---------CRLFDLRADQELM---TYSHDNIICGITSVSFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 58.9 bits (141), Expect = 8e-09
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P + +SG DA K+W + C TF GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I G +GS D T RL+D L + + C I V+ + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
>ref|NP_001040084.1| transducin beta-like protein 3 [Bos taurus].
Length = 800
Score = 74.3 bits (181), Expect = 2e-13
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
K+W +L GH + C +F P V+ + D +K+W+ +D SC+ TF+GH
Sbjct: 504 KLWALPRCQLLGTFSGHRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHD 563
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVI---------ADCGCSINGVAVG 701
+L A V RG ++S DG +LW + C+ + C + G
Sbjct: 564 ASVLKVAFVSRGTQLLSSGSDGLLKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDRALTG 623
Query: 702 AADNSINL--------GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
A+D+ + L + EQ E +V + ++ L E + L+ +GL
Sbjct: 624 ASDSRVVLWKDVTEAEQAEEQAKREEQVVKQQELDNLLHEKRYLRALGL 672
>ref|NP_001092503.1| guanine nucleotide-binding protein subunit beta-4 [Bos taurus].
Length = 340
Score = 73.9 bits (180), Expect = 2e-13
Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF +V S G D +W E A F GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDSQIVTSSG-DTTCALWDIETAQQTTAFTGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ + VSG+ D +++LWD C IN V+ + GS + T
Sbjct: 191 SLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++LL + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLLYSHDN-------------IICGITSVAFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNVWDTLKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 53.9 bits (128), Expect = 2e-07
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W + GH DV P +SG DA K+W D C +F GH
Sbjct: 168 LWDIETAQQTTAFTGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVS 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWD--CGRSACLGVIADCGCSINGVAVGAADNSINL 725
I + G +GS D T RL+D + L + C I VA + +
Sbjct: 228 DINAVSFFPNGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNVWDTLKGDRAGVLAGHDNRVSCLGV 320
Score = 51.2 bits (121), Expect = 2e-06
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Frame = +3
Query: 264 APYTTFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCR 443
A TT H+ + L + K+W +G R+ GHV D+N
Sbjct: 174 AQQTTAFTGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVS 233
Query: 444 FFPSGLVVLSGGMDAQLKIWS--AEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGT 617
FFP+G +G DA +++ A+ + + GI A + G+ +++G D
Sbjct: 234 FFPNGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFN 293
Query: 618 ARLWDCGRSACLGVIA 665
+WD + GV+A
Sbjct: 294 CNVWDTLKGDRAGVLA 309
>ref|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos taurus].
Length = 627
Score = 70.1 bits (170), Expect = 3e-12
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 19/247 (7%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W A G+ R L GH V + + +++SG D LK+W+AE C+ T GH
Sbjct: 323 LKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGH 380
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSI-------NGVAVGA 704
+ + E K VVSGSRD T R+WD CL V+ ++ V GA
Sbjct: 381 TSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 438
Query: 705 ADNSINLGSPE-QTPSEREVGTESKMLLLARE---------DKKLQCVGLQSRQPVFLFI 854
D + + PE +T G +++ L + D ++ +++ +
Sbjct: 439 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 498
Query: 855 GSDAFNCCTFLSGFLLLAGTQDGNIYQLDVRNPRA--PVQVIHRSRAPVLSLLSFRDGFI 1028
G + L +L++G D + D++ + +Q ++ ++ V L ++ I
Sbjct: 499 GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 558
Query: 1029 ASQGDGS 1049
S DG+
Sbjct: 559 TSSDDGT 565
Score = 57.0 bits (136), Expect = 3e-08
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Frame = +3
Query: 390 GELR--RVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILD 563
GEL+ +VL+GH V C F G ++SG D LK+WSA C+ T GH GG+
Sbjct: 288 GELKSPKVLKGHDDHVITCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 346
Query: 564 TAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQT 743
+ + R ++SGS D T ++W+ C+ + ++ + + + GS + T
Sbjct: 347 SQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDAT 402
Query: 744 PSEREVGTESKMLLLAREDKKLQCVGLQSRQPV 842
++ T + +L ++CV R+ V
Sbjct: 403 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV 435
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,859,675
Number of extensions: 1269678
Number of successful extensions: 5389
Number of sequences better than 1.0e-05: 75
Number of HSP's gapped: 5157
Number of HSP's successfully gapped: 132
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003696
(1105 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534014.1| PREDICTED: similar to proteasomal ATPase-associ... 672 0.0
Alignment gi|XP_859294.1| PREDICTED: similar to guanine nucleotide-bindin... 79 6e-15
Alignment gi|XP_859213.1| PREDICTED: similar to guanine nucleotide-bindin... 79 6e-15
Alignment gi|XP_536861.2| PREDICTED: similar to guanine nucleotide-bindin... 79 6e-15
Alignment gi|XP_849538.1| PREDICTED: similar to guanine nucleotide-bindin... 79 6e-15
Alignment gi|XP_547184.2| PREDICTED: similar to transducin beta-like 3 [C... 77 2e-14
Alignment gi|XP_545211.1| PREDICTED: similar to guanine nucleotide-bindin... 76 7e-14
Alignment gi|NP_001003236.1| guanine nucleotide-binding protein G(I)/G(S)... 75 1e-13
Alignment gi|XP_868519.1| PREDICTED: similar to platelet-activating facto... 73 6e-13
Alignment gi|XP_859256.1| PREDICTED: similar to guanine nucleotide-bindin... 73 6e-13
>ref|XP_534014.1| PREDICTED: similar to proteasomal ATPase-associated factor 1 [Canis
familiaris].
Length = 392
Score = 672 bits (1733), Expect = 0.0
Identities = 330/361 (91%), Positives = 339/361 (93%)
Frame = +3
Query: 21 MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIGLDGIPEVIASEGFVVN 200
MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIG DGIPEV ASEGF+VN
Sbjct: 1 MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIGQDGIPEVTASEGFIVN 60
Query: 201 EINKKSIHISCPKENASSKFLAPYTTFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQ 380
EINKKSIHISCPKENASSKFLAPYTTFSRIHAKSITCLDI MKIWQ
Sbjct: 61 EINKKSIHISCPKENASSKFLAPYTTFSRIHAKSITCLDISSGGGLGVSSSTDGTMKIWQ 120
Query: 381 ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL 560
ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL
Sbjct: 121 ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL 180
Query: 561 DTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQ 740
DTAIV+RG+NVVSGSRDGTARLWDCGRSACLGVIADCG SINGVAVGAADNSINLGSPEQ
Sbjct: 181 DTAIVDRGRNVVSGSRDGTARLWDCGRSACLGVIADCGSSINGVAVGAADNSINLGSPEQ 240
Query: 741 TPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQD 920
TPSERE+GTESKMLLLAREDKKLQC+GLQSRQPVFLF+GSDAFNCCTFLSGFLLLAGTQD
Sbjct: 241 TPSEREIGTESKMLLLAREDKKLQCLGLQSRQPVFLFVGSDAFNCCTFLSGFLLLAGTQD 300
Query: 921 GNIYQLDVRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFIVQQDLDYVIELTGD 1100
GNIYQLDVR+PR PVQVIHRS APVLSLLSFRDGF+ASQGDGS FIVQQDLDY+IELTG
Sbjct: 301 GNIYQLDVRSPRTPVQVIHRSGAPVLSLLSFRDGFVASQGDGSCFIVQQDLDYLIELTGA 360
Query: 1101 D 1103
D
Sbjct: 361 D 361
>ref|XP_859294.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 8 [Canis familiaris].
Length = 340
Score = 79.3 bits (194), Expect = 6e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF ++ S G D +W E V F GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ G+ VSG+ D + +LWD S C IN VA + GS + T
Sbjct: 191 SLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++L+ + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLMYSHDN-------------IICGITSVAFS----RSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNIWDAMKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 168 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 228 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 320
>ref|XP_859213.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 6 [Canis familiaris].
Length = 240
Score = 79.3 bits (194), Expect = 6e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF ++ S G D +W E V F GH G ++
Sbjct: 32 NVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSL 90
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ G+ VSG+ D + +LWD S C IN VA + GS + T
Sbjct: 91 SLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATC 150
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++L+ + ++ + I S AF+ SG LLLAG D N
Sbjct: 151 RLFDLRADQELLMYSHDN-------------IICGITSVAFS----RSGRLLLAGYDDFN 193
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 194 CNIWDAMKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 236
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 68 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 127
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 128 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 187
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 188 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 220
>ref|XP_536861.2| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 1 [Canis familiaris].
Length = 340
Score = 79.3 bits (194), Expect = 6e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF ++ S G D +W E V F GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ G+ VSG+ D + +LWD S C IN VA + GS + T
Sbjct: 191 SLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++L+ + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLMYSHDN-------------IICGITSVAFS----RSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNIWDAMKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 168 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 228 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 320
>ref|XP_849538.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 2 [Canis familiaris].
Length = 340
Score = 79.3 bits (194), Expect = 6e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF ++ S G D +W E V F GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ G+ VSG+ D + +LWD S C IN VA + GS + T
Sbjct: 191 SLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++L+ + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLMYSHDN-------------IICGITSVAFS----RSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNIWDAMKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 168 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 228 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 320
>ref|XP_547184.2| PREDICTED: similar to transducin beta-like 3 [Canis familiaris].
Length = 801
Score = 77.4 bits (189), Expect = 2e-14
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 17/197 (8%)
Frame = +3
Query: 285 RIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLV 464
R H K I + + K+W + +L + GH + C +F P V
Sbjct: 473 RCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPHCQLLGIFSGHRRGLWCVQFSPMDQV 532
Query: 465 VLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARLWDCGRS 644
+ + D +K+W+ +D SC+ TF+GH +L V RG ++S DG +LW +
Sbjct: 533 LATASADGTIKLWALQDFSCLKTFEGHDASVLKVVFVSRGTQLLSSGSDGLVKLWTIKNN 592
Query: 645 ACLGVI---------ADCGCSINGVAVGAADNSINL--------GSPEQTPSEREVGTES 773
C+ + C + GA+D+ + L S EQ E EV +
Sbjct: 593 ECVKTLDAHEDKVWGLHCSRLDDRALTGASDSCVILWKDVTEEEQSEEQARREEEVVKQQ 652
Query: 774 KMLLLAREDKKLQCVGL 824
++ L E + L+ +GL
Sbjct: 653 ELDNLLYEKRYLRALGL 669
>ref|XP_545211.1| PREDICTED: similar to guanine nucleotide-binding protein, beta-4
subunit [Canis familiaris].
Length = 340
Score = 75.9 bits (185), Expect = 7e-14
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF +V S G D +W E A TF GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDSQIVTSSG-DTTCALWDIETAQQTTTFTGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ + VSG+ D +++LWD C IN V+ + GS + T
Sbjct: 191 SLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++LL + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLLYSHDN-------------IICGITSVAFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNVWDTLKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 53.9 bits (128), Expect = 3e-07
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W + GH DV P +SG DA K+W D C +F GH
Sbjct: 168 LWDIETAQQTTTFTGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVS 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWD--CGRSACLGVIADCGCSINGVAVGAADNSINL 725
I + G +GS D T RL+D + L + C I VA + +
Sbjct: 228 DINAVSFFPNGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNVWDTLKGDRAGVLAGHDNRVSCLGV 320
Score = 51.2 bits (121), Expect = 2e-06
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Frame = +3
Query: 273 TTFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFP 452
TTF+ H+ + L + K+W +G R+ GHV D+N FFP
Sbjct: 178 TTFTG-HSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFP 236
Query: 453 SGLVVLSGGMDAQLKIWS--AEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARL 626
+G +G DA +++ A+ + + GI A + G+ +++G D +
Sbjct: 237 NGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNV 296
Query: 627 WDCGRSACLGVIA 665
WD + GV+A
Sbjct: 297 WDTLKGDRAGVLA 309
>ref|NP_001003236.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
[Canis lupus familiaris].
Length = 340
Score = 74.7 bits (182), Expect = 1e-13
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF +V S G D +W E TF GH G ++
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ + VSG+ D +A+LWD C IN + N+ GS + T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT- 249
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
L R D++L S + I S +F+ SG LLLAG D N
Sbjct: 250 ---------CRLFDLRADQELM---TYSHDNIICGITSVSFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 58.9 bits (141), Expect = 8e-09
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P + +SG DA K+W + C TF GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I G +GS D T RL+D L + + C I V+ + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
>ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 5 [Canis familiaris].
Length = 415
Score = 72.8 bits (177), Expect = 6e-13
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 6/199 (3%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W G+ R L+GH V F SG ++ S D +K+W + C+ T GH
Sbjct: 132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINL 725
+ AI+ G ++VS SRD T ++W+ C+ + V I
Sbjct: 192 DHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL---QSRQPVFLFIGSDAFNCCTFLSGF 896
S +QT V T+ L + ++C+ S + GS+ N T SG
Sbjct: 252 CSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSEEENPRTKKSGK 311
Query: 897 ---LLLAGTQDGNIYQLDV 944
LL+G++D I DV
Sbjct: 312 PGPFLLSGSRDKTIKMWDV 330
Score = 53.9 bits (128), Expect = 3e-07
Identities = 36/120 (30%), Positives = 53/120 (44%)
Frame = +3
Query: 408 LEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGK 587
L GH V F P V++S DA +K+W E T KGH + D + GK
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 588 NVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTPSEREVGT 767
+ S S D T +LWD C+ + +++ VA+ + I S ++T EV T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQT 223
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/90 (28%), Positives = 41/90 (45%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W S G L GH V F G +LS D L++W ++ C+ T H
Sbjct: 325 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 384
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDC 635
+ + + VV+GS D T ++W+C
Sbjct: 385 EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 414
>ref|XP_859256.1| PREDICTED: similar to guanine nucleotide-binding protein, beta 2
isoform 7 [Canis familiaris].
Length = 351
Score = 72.8 bits (177), Expect = 6e-13
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 1/211 (0%)
Frame = +3
Query: 429 VNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSR 608
++CCRF ++ S G D +W E V F GH G ++ ++ G+ VSG+
Sbjct: 157 LSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGAC 215
Query: 609 DGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTPSEREVGTESKMLLL 788
D + +LWD S C IN VA + GS + T ++ + ++L+
Sbjct: 216 DASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMY 275
Query: 789 AREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGNIYQLD-VRNPRAPV 965
+ ++ + I S AF+ SG LLLAG D N D ++ RA V
Sbjct: 276 SHDN-------------IICGITSVAFS----RSGRLLLAGYDDFNCNIWDAMKGDRAGV 318
Query: 966 QVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
H +R L + DG + G SF+
Sbjct: 319 LAGHDNRVSCLGVTD--DGMAVATGSWDSFL 347
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 179 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 238
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 239 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 298
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 299 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 331
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,795,456
Number of extensions: 1306051
Number of successful extensions: 5601
Number of sequences better than 1.0e-05: 97
Number of HSP's gapped: 5259
Number of HSP's successfully gapped: 171
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003696
(1105 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079431.1| proteasomal ATPase-associated factor 1 [Homo sa... 659 0.0
Alignment gi|NP_008882.2| transcription initiation factor TFIID subunit 5... 79 6e-15
Alignment gi|NP_006444.2| transducin beta-like protein 3 [Homo sapiens]. 79 6e-15
Alignment gi|NP_005264.2| guanine nucleotide-binding protein G(I)/G(S)/G(... 79 6e-15
Alignment gi|NP_067642.1| guanine nucleotide-binding protein subunit beta... 76 6e-14
Alignment gi|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens]. 75 8e-14
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 75 1e-13
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 75 1e-13
Alignment gi|NP_002065.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 75 1e-13
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 73 4e-13
>ref|NP_079431.1| proteasomal ATPase-associated factor 1 [Homo sapiens].
Length = 392
Score = 659 bits (1699), Expect = 0.0
Identities = 327/361 (90%), Positives = 334/361 (92%)
Frame = +3
Query: 21 MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIGLDGIPEVIASEGFVVN 200
MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKP+LYGSLTCQGIGLDGIPEV ASEGF VN
Sbjct: 1 MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPSLYGSLTCQGIGLDGIPEVTASEGFTVN 60
Query: 201 EINKKSIHISCPKENASSKFLAPYTTFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQ 380
EINKKSIHISCPKENASSKFLAPYTTFSRIH KSITCLDI MKIWQ
Sbjct: 61 EINKKSIHISCPKENASSKFLAPYTTFSRIHTKSITCLDISSRGGLGVSSSTDGTMKIWQ 120
Query: 381 ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL 560
ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL
Sbjct: 121 ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL 180
Query: 561 DTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQ 740
DTAIV+RG+NVVS SRDGTARLWDCGRSACLGV+ADCG SINGVAVGAADNSINLGSPEQ
Sbjct: 181 DTAIVDRGRNVVSASRDGTARLWDCGRSACLGVLADCGSSINGVAVGAADNSINLGSPEQ 240
Query: 741 TPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQD 920
PSEREVGTE+KMLLLAREDKKLQC+GLQSRQ VFLFIGSDAFNCCTFLSGFLLLAGTQD
Sbjct: 241 MPSEREVGTEAKMLLLAREDKKLQCLGLQSRQLVFLFIGSDAFNCCTFLSGFLLLAGTQD 300
Query: 921 GNIYQLDVRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFIVQQDLDYVIELTGD 1100
GNIYQLDVR+PRAPVQVIHRS APVLSLLS RDGFIASQGDGS FIVQQDLDYV ELTG
Sbjct: 301 GNIYQLDVRSPRAPVQVIHRSGAPVLSLLSVRDGFIASQGDGSCFIVQQDLDYVTELTGA 360
Query: 1101 D 1103
D
Sbjct: 361 D 361
>ref|NP_008882.2| transcription initiation factor TFIID subunit 5 [Homo sapiens].
Length = 800
Score = 79.3 bits (194), Expect = 6e-15
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
++W + + R+ GH+ DVNC RF P+ V +G D +++W + +CV F GHK
Sbjct: 610 RLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHK 669
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVI---ADCGCSING------VAVG 701
G I G+ + +G+ DG LWD G +G + D CS+ +A G
Sbjct: 670 GPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASG 729
Query: 702 AADNSINL 725
+ DN++ L
Sbjct: 730 SMDNTVRL 737
Score = 61.6 bits (148), Expect = 1e-09
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Frame = +3
Query: 402 RVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVER 581
++L GH V F P +LS D +++WS + +C+V +KGH + DT
Sbjct: 537 KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 596
Query: 582 GKNVVSGSRDGTARLWDCGRSACL----GVIADCGC-----SINGVAVGAADNSINL 725
G VSG D ARLW L G +AD C + N VA G+AD ++ L
Sbjct: 597 GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653
Score = 50.8 bits (120), Expect = 2e-06
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+++W +GH + V +F P G +SGG D ++W+ + + F GH
Sbjct: 567 VRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH 626
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACL-------GVIADCGCSING--VAV 698
+ T V +GS D T RLWD C+ G I S NG +A
Sbjct: 627 LADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLAT 686
Query: 699 GAADNSINL 725
GA D + L
Sbjct: 687 GATDGRVLL 695
>ref|NP_006444.2| transducin beta-like protein 3 [Homo sapiens].
Length = 808
Score = 79.3 bits (194), Expect = 6e-15
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 17/200 (8%)
Frame = +3
Query: 276 TFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFPS 455
T R H K I + I K+W +L V GH + C +F P
Sbjct: 473 TTQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPM 532
Query: 456 GLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARLWDC 635
V+ + D +K+W+ +D SC+ TF+GH +L A V RG ++S DG +LW
Sbjct: 533 DQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTI 592
Query: 636 GRSACLGVI---------ADCGCSINGVAVGAADNSINL--------GSPEQTPSEREVG 764
+ C+ + C + GA+D+ + L + EQ E +V
Sbjct: 593 KNNECVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAEQAEEQARQEEQVV 652
Query: 765 TESKMLLLAREDKKLQCVGL 824
+ ++ L E + L+ +GL
Sbjct: 653 RQQELDNLLHEKRYLRALGL 672
Score = 50.8 bits (120), Expect = 2e-06
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 8/181 (4%)
Frame = +3
Query: 450 PSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARLW 629
P+ L++ S DA +++WS +D SC+ H + A G ++S RD +W
Sbjct: 163 PTRLLLFSSATDAAIRVWSLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKICIIW 222
Query: 630 DCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTPSEREVGTESKMLLLAREDKKL 809
D + C + + + ++ L PE+ S+ V + L A + L
Sbjct: 223 D---------LQSCQATRTVPVFESVEAAVLL--PEEPVSQLGVKSPGLYFLTAGDQGTL 271
Query: 810 --------QCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGNIYQLDVRNPRAPV 965
QCV Q++ P G + +C + ++L T D N+ + R+ R
Sbjct: 272 RVWEAASGQCVYTQAQPP---GPGQELTHCTLAHTAGVVLTATADHNLLLYEARSLRLQK 328
Query: 966 Q 968
Q
Sbjct: 329 Q 329
>ref|NP_005264.2| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
[Homo sapiens].
Length = 340
Score = 79.3 bits (194), Expect = 6e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF ++ S G D +W E V F GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ G+ VSG+ D + +LWD S C IN VA + GS + T
Sbjct: 191 SLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++L+ + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLMYSHDN-------------IICGITSVAFS----RSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNIWDAMKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 168 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 228 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 320
>ref|NP_067642.1| guanine nucleotide-binding protein subunit beta-4 [Homo sapiens].
Length = 340
Score = 75.9 bits (185), Expect = 6e-14
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF +V S G D +W E A TF GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDSQIVTSSG-DTTCALWDIETAQQTTTFTGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ + VSG+ D +++LWD C IN V+ + GS + T
Sbjct: 191 SLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++LL + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLLYSHDN-------------IICGITSVAFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNVWDTLKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 53.9 bits (128), Expect = 3e-07
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W + GH DV P +SG DA K+W D C +F GH
Sbjct: 168 LWDIETAQQTTTFTGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVS 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWD--CGRSACLGVIADCGCSINGVAVGAADNSINL 725
I + G +GS D T RL+D + L + C I VA + +
Sbjct: 228 DINAVSFFPNGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNVWDTLKGDRAGVLAGHDNRVSCLGV 320
Score = 51.2 bits (121), Expect = 2e-06
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Frame = +3
Query: 273 TTFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFP 452
TTF+ H+ + L + K+W +G R+ GHV D+N FFP
Sbjct: 178 TTFTG-HSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFP 236
Query: 453 SGLVVLSGGMDAQLKIWS--AEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARL 626
+G +G DA +++ A+ + + GI A + G+ +++G D +
Sbjct: 237 NGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNV 296
Query: 627 WDCGRSACLGVIA 665
WD + GV+A
Sbjct: 297 WDTLKGDRAGVLA 309
>ref|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].
Length = 330
Score = 75.5 bits (184), Expect = 8e-14
Identities = 33/101 (32%), Positives = 49/101 (48%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W +G+ + L+GH V CC F P +++SG D +KIW + C+ T H
Sbjct: 107 LKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAH 166
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIAD 668
+ G +VSGS DG R+WD CL + D
Sbjct: 167 SDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVD 207
Score = 57.4 bits (137), Expect = 2e-08
Identities = 50/179 (27%), Positives = 69/179 (38%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N L+ L GH V+ +F P+G + S D + IW A D T GH I D
Sbjct: 30 NYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDV 89
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
A +VS S D T +LWD CL + + N I GS ++T
Sbjct: 90 AWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETV 149
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDG 923
EV T + L+ + V FNC SG L+++G+ DG
Sbjct: 150 KIWEVKTGKCLKTLSAHSDPVSAV---------------HFNC----SGSLIVSGSYDG 189
Score = 56.6 bits (135), Expect = 4e-08
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 1/122 (0%)
Frame = +3
Query: 291 HAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVL 470
H+ + C + +KIW+ G+ + L H V+ F SG +++
Sbjct: 124 HSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIV 183
Query: 471 SGGMDAQLKIWSAEDASCVVTFKGHKGGILD-TAIVERGKNVVSGSRDGTARLWDCGRSA 647
SG D +IW A C+ T + GK +++ + D T +LWD R
Sbjct: 184 SGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGR 243
Query: 648 CL 653
CL
Sbjct: 244 CL 245
Score = 55.8 bits (133), Expect = 7e-08
Identities = 29/120 (24%), Positives = 52/120 (43%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
IW A +G+ + L GH +++ + ++S D LK+W C+ T KGH
Sbjct: 67 IWGAYDGKYEKTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSN 126
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGS 731
+ ++SGS D T ++W+ CL ++ ++ V + + I GS
Sbjct: 127 YVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGS 186
Score = 53.5 bits (127), Expect = 3e-07
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +3
Query: 369 KIWQASNGE-LRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+IW A++G+ L+ +++ V+ +F P+G +L+ +D LK+W C+ T+ GH
Sbjct: 192 RIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGH 251
Query: 546 KGG---ILDTAIVERGKNVVSGSRDGTARLWD 632
K I V GK +VSGS D +W+
Sbjct: 252 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 283
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 75.1 bits (183), Expect = 1e-13
Identities = 33/101 (32%), Positives = 49/101 (48%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+KIW S+G+ + L+GH V CC F P +++SG D ++IW + C+ T H
Sbjct: 111 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIAD 668
+ G +VS S DG R+WD CL + D
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Score = 61.2 bits (147), Expect = 2e-09
Identities = 30/121 (24%), Positives = 51/121 (42%)
Frame = +3
Query: 291 HAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVL 470
H K+++ + +KIW A +G+ + + GH ++ + +++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 471 SGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARLWDCGRSAC 650
S D LKIW C+ T KGH + + +VSGS D + R+WD C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 651 L 653
L
Sbjct: 164 L 164
Score = 59.3 bits (142), Expect = 6e-09
Identities = 33/89 (37%), Positives = 42/89 (47%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N L+ L GH V+ +F P+G + S D +KIW A D T GHK GI D
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACL 653
A +VS S D T ++WD CL
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCL 122
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 369 KIWQASNGE-LRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+IW ++G+ L+ +++ V+ +F P+G +L+ +D LK+W C+ T+ GH
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 546 KGG---ILDTAIVERGKNVVSGSRDGTARLWD 632
K I V GK +VSGS D +W+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 75.1 bits (183), Expect = 1e-13
Identities = 33/101 (32%), Positives = 49/101 (48%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+KIW S+G+ + L+GH V CC F P +++SG D ++IW + C+ T H
Sbjct: 111 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIAD 668
+ G +VS S DG R+WD CL + D
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Score = 61.2 bits (147), Expect = 2e-09
Identities = 30/121 (24%), Positives = 51/121 (42%)
Frame = +3
Query: 291 HAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVL 470
H K+++ + +KIW A +G+ + + GH ++ + +++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 471 SGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARLWDCGRSAC 650
S D LKIW C+ T KGH + + +VSGS D + R+WD C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 651 L 653
L
Sbjct: 164 L 164
Score = 59.3 bits (142), Expect = 6e-09
Identities = 33/89 (37%), Positives = 42/89 (47%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N L+ L GH V+ +F P+G + S D +KIW A D T GHK GI D
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACL 653
A +VS S D T ++WD CL
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCL 122
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 369 KIWQASNGE-LRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+IW ++G+ L+ +++ V+ +F P+G +L+ +D LK+W C+ T+ GH
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 546 KGG---ILDTAIVERGKNVVSGSRDGTARLWD 632
K I V GK +VSGS D +W+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
>ref|NP_002065.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
[Homo sapiens].
Length = 340
Score = 74.7 bits (182), Expect = 1e-13
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF +V S G D +W E TF GH G ++
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ + VSG+ D +A+LWD C IN + N+ GS + T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT- 249
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
L R D++L S + I S +F+ SG LLLAG D N
Sbjct: 250 ---------CRLFDLRADQELM---TYSHDNIICGITSVSFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 58.9 bits (141), Expect = 8e-09
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P + +SG DA K+W + C TF GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I G +GS D T RL+D L + + C I V+ + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 73.2 bits (178), Expect = 4e-13
Identities = 36/124 (29%), Positives = 59/124 (47%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W A G +L GH +++ F ++L+G MD K+W A + CV T GH
Sbjct: 245 VWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDD 304
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGS 731
ILD+ GK + + S DGTAR++ C+ + I+ ++ N + GS
Sbjct: 305 EILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGS 364
Query: 732 PEQT 743
++T
Sbjct: 365 SDKT 368
Score = 68.9 bits (167), Expect = 8e-12
Identities = 37/125 (29%), Positives = 61/125 (48%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
K+W A+NG+ L GH ++ F +G ++ + D +I+SA C+ +GH+
Sbjct: 286 KLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHE 345
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLG 728
G I + +G ++++GS D TAR+WD CL V+ I A N + G
Sbjct: 346 GEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITG 405
Query: 729 SPEQT 743
S + T
Sbjct: 406 SKDNT 410
Score = 65.5 bits (158), Expect = 9e-11
Identities = 31/125 (24%), Positives = 55/125 (44%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
K+W G+ GH ++ C F P +V +G MD K+W ++ V T +GH
Sbjct: 160 KLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHS 219
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLG 728
I+ + G +++GS D T +WD + ++ I+ + + I G
Sbjct: 220 AEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTG 279
Query: 729 SPEQT 743
S ++T
Sbjct: 280 SMDKT 284
Score = 63.5 bits (153), Expect = 3e-10
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 1/141 (0%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFF-PSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
K+W ++GE LEGH V F P G + +G D K+WS E C TF+GH
Sbjct: 117 KLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGH 176
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINL 725
I+ + + V +GS D TA+LWD + + I ++ + + I
Sbjct: 177 TAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIIT 236
Query: 726 GSPEQTPSEREVGTESKMLLL 788
GS + T + T K+ +L
Sbjct: 237 GSFDHTVVVWDADTGRKVNIL 257
Score = 60.1 bits (144), Expect = 4e-09
Identities = 28/87 (32%), Positives = 46/87 (52%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
+I+ A+ + LEGH +++ F P G +L+G D +IW A+ C+ +GH
Sbjct: 328 RIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHT 387
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLW 629
I A +G V++GS+D T R+W
Sbjct: 388 DEIFSCAFNYKGNIVITGSKDNTCRIW 414
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,073,666
Number of extensions: 1294732
Number of successful extensions: 5548
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 5255
Number of HSP's successfully gapped: 136
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003696
(1105 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034442.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 79 5e-15
Alignment gi|NP_796316.2| transcription initiation factor TFIID subunit 5... 79 5e-15
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 78 1e-14
Alignment gi|NP_038559.2| guanine nucleotide-binding protein subunit beta... 76 4e-14
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 75 9e-14
Alignment gi|NP_001153489.1| guanine nucleotide-binding protein G(I)/G(S)... 75 1e-13
Alignment gi|NP_001153488.1| guanine nucleotide-binding protein G(I)/G(S)... 75 1e-13
Alignment gi|NP_032168.1| guanine nucleotide-binding protein G(I)/G(S)/G(... 75 1e-13
Alignment gi|NP_663371.2| transducin beta-like protein 3 [Mus musculus]. 74 2e-13
Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase IB s... 70 4e-12
>ref|NP_034442.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Mus
musculus].
Length = 340
Score = 79.3 bits (194), Expect = 5e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF ++ S G D +W E V F GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ G+ VSG+ D + +LWD S C IN VA + GS + T
Sbjct: 191 SLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++L+ + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLMYSHDN-------------IICGITSVAFS----RSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNIWDAMKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 168 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 228 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 320
>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
Length = 801
Score = 79.3 bits (194), Expect = 5e-15
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
++W + + R+ GH+ DVNC RF P+ V +G D +++W + +CV F GHK
Sbjct: 611 RLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHK 670
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVI---ADCGCSING------VAVG 701
G I G+ + +G+ DG LWD G +G + D CS+ +A G
Sbjct: 671 GPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASG 730
Query: 702 AADNSINL 725
+ DN++ L
Sbjct: 731 SMDNTVRL 738
Score = 61.6 bits (148), Expect = 1e-09
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Frame = +3
Query: 402 RVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVER 581
++L GH V F P +LS D +++WS + +C+V +KGH + DT
Sbjct: 538 KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 597
Query: 582 GKNVVSGSRDGTARLWDCGRSACL----GVIADCGC-----SINGVAVGAADNSINL 725
G VSG D ARLW L G +AD C + N VA G+AD ++ L
Sbjct: 598 GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 654
Score = 50.8 bits (120), Expect = 2e-06
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+++W +GH + V +F P G +SGG D ++W+ + + F GH
Sbjct: 568 VRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH 627
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACL-------GVIADCGCSING--VAV 698
+ T V +GS D T RLWD C+ G I S NG +A
Sbjct: 628 LADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLAT 687
Query: 699 GAADNSINL 725
GA D + L
Sbjct: 688 GATDGRVLL 696
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 77.8 bits (190), Expect = 1e-14
Identities = 36/103 (34%), Positives = 51/103 (49%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W +G+ + L+GH V CC F P +++SG D +KIW + C+ T H
Sbjct: 105 LKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAH 164
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCG 674
I G +VSGS DG R+WD CL +AD G
Sbjct: 165 SDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEG 207
Score = 63.5 bits (153), Expect = 3e-10
Identities = 50/182 (27%), Positives = 73/182 (40%)
Frame = +3
Query: 378 QASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGI 557
Q N LR L GH ++ +F P+G + S DA + IW A D +C T GH I
Sbjct: 25 QKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEI 84
Query: 558 LDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPE 737
D A +VS S D T ++WD CL + + N I GS +
Sbjct: 85 SDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFD 144
Query: 738 QTPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQ 917
++ EV T + L+ + V FNC +G L+++G+
Sbjct: 145 ESVKIWEVKTGKCLKTLSAHSDPISAVN---------------FNC----NGSLIVSGSY 185
Query: 918 DG 923
DG
Sbjct: 186 DG 187
Score = 56.6 bits (135), Expect = 3e-08
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 1/122 (0%)
Frame = +3
Query: 291 HAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVL 470
H+ + C D +KIW+ G+ + L H ++ F +G +++
Sbjct: 122 HSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIV 181
Query: 471 SGGMDAQLKIWSAEDASCVVTFKGH-KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSA 647
SG D +IW A C+ T + GK +++ + D T +LWD R
Sbjct: 182 SGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGR 241
Query: 648 CL 653
CL
Sbjct: 242 CL 243
Score = 54.3 bits (129), Expect = 2e-07
Identities = 30/120 (25%), Positives = 51/120 (42%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
IW A +G ++ L GH +++ + ++S D LK+W C+ T KGH
Sbjct: 65 IWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSD 124
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGS 731
+ +VSGS D + ++W+ CL ++ I+ V + I GS
Sbjct: 125 FVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGS 184
Score = 51.6 bits (122), Expect = 1e-06
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Frame = +3
Query: 369 KIWQASNGELRRVL--EGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKG 542
+IW A++G+ R L EG+ V+ +F P+G +L+ +D LK+W C+ T+ G
Sbjct: 190 RIWDAASGQCLRTLADEGNP-PVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTG 248
Query: 543 HKGG---ILDTAIVERGKNVVSGSRDGTARLWD 632
HK + + V K VVSGS D +W+
Sbjct: 249 HKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWN 281
>ref|NP_038559.2| guanine nucleotide-binding protein subunit beta-4 [Mus musculus].
Length = 340
Score = 76.3 bits (186), Expect = 4e-14
Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF G ++ S G D +W E TF GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDGQIITSSG-DTTCALWDIETGQQTTTFTGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ K VSG+ D +++LWD C IN V+ + + GS + T
Sbjct: 191 SLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFPSGYAFATGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++LL + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLLYSHDN-------------IICGITSVAFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ R+ V H +R L + DG + G SF+
Sbjct: 294 CSVWDALKGGRSGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 56.2 bits (134), Expect = 4e-08
Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P +SG DA K+W D C +F GH
Sbjct: 168 LWDIETGQQTTTFTGHSGDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTGHIS 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWD--CGRSACLGVIADCGCSINGVAVGAADNSINL 725
I + G +GS D T RL+D + L + C I VA + +
Sbjct: 228 DINAVSFFPSGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + S + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCSVWDALKGGRSGVLAGHDNRVSCLGV 320
Score = 52.4 bits (124), Expect = 6e-07
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Frame = +3
Query: 273 TTFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFP 452
TTF+ H+ + L + K+W +G R+ GH+ D+N FFP
Sbjct: 178 TTFTG-HSGDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFP 236
Query: 453 SGLVVLSGGMDAQLKIWS--AEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARL 626
SG +G DA +++ A+ + + GI A + G+ +++G D +
Sbjct: 237 SGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCSV 296
Query: 627 WDCGRSACLGVIA 665
WD + GV+A
Sbjct: 297 WDALKGGRSGVLA 309
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 75.1 bits (183), Expect = 9e-14
Identities = 33/101 (32%), Positives = 49/101 (48%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+KIW S+G+ + L+GH V CC F P +++SG D ++IW + C+ T H
Sbjct: 111 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIAD 668
+ G +VS S DG R+WD CL + D
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Score = 61.2 bits (147), Expect = 1e-09
Identities = 30/121 (24%), Positives = 51/121 (42%)
Frame = +3
Query: 291 HAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVL 470
H K+++ + +KIW A +G+ + + GH ++ + +++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 471 SGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARLWDCGRSAC 650
S D LKIW C+ T KGH + + +VSGS D + R+WD C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 651 L 653
L
Sbjct: 164 L 164
Score = 59.3 bits (142), Expect = 5e-09
Identities = 33/89 (37%), Positives = 42/89 (47%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N L+ L GH V+ +F P+G + S D +KIW A D T GHK GI D
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACL 653
A +VS S D T ++WD CL
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCL 122
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 369 KIWQASNGE-LRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+IW ++G+ L+ +++ V+ +F P+G +L+ +D LK+W C+ T+ GH
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 546 KGG---ILDTAIVERGKNVVSGSRDGTARLWD 632
K I V GK +VSGS D +W+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
>ref|NP_001153489.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Mus
musculus].
Length = 340
Score = 74.7 bits (182), Expect = 1e-13
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF +V S G D +W E TF GH G ++
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ + VSG+ D +A+LWD C IN + N+ GS + T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT- 249
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
L R D++L S + I S +F+ SG LLLAG D N
Sbjct: 250 ---------CRLFDLRADQELM---TYSHDNIICGITSVSFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 58.9 bits (141), Expect = 7e-09
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P + +SG DA K+W + C TF GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I G +GS D T RL+D L + + C I V+ + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Score = 48.5 bits (114), Expect = 9e-06
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
K+W G R+ GH D+N FFP+G +G DA +++ ++T+
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 549 --GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA 665
GI + + G+ +++G D +WD ++ GV+A
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
>ref|NP_001153488.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Mus
musculus].
Length = 340
Score = 74.7 bits (182), Expect = 1e-13
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF +V S G D +W E TF GH G ++
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ + VSG+ D +A+LWD C IN + N+ GS + T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT- 249
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
L R D++L S + I S +F+ SG LLLAG D N
Sbjct: 250 ---------CRLFDLRADQELM---TYSHDNIICGITSVSFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 58.9 bits (141), Expect = 7e-09
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P + +SG DA K+W + C TF GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I G +GS D T RL+D L + + C I V+ + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Score = 48.5 bits (114), Expect = 9e-06
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
K+W G R+ GH D+N FFP+G +G DA +++ ++T+
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 549 --GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA 665
GI + + G+ +++G D +WD ++ GV+A
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
>ref|NP_032168.1| guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Mus
musculus].
Length = 340
Score = 74.7 bits (182), Expect = 1e-13
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF +V S G D +W E TF GH G ++
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ + VSG+ D +A+LWD C IN + N+ GS + T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT- 249
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
L R D++L S + I S +F+ SG LLLAG D N
Sbjct: 250 ---------CRLFDLRADQELM---TYSHDNIICGITSVSFS----KSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 58.9 bits (141), Expect = 7e-09
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P + +SG DA K+W + C TF GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I G +GS D T RL+D L + + C I V+ + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Score = 48.5 bits (114), Expect = 9e-06
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
K+W G R+ GH D+N FFP+G +G DA +++ ++T+
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 549 --GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA 665
GI + + G+ +++G D +WD ++ GV+A
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
>ref|NP_663371.2| transducin beta-like protein 3 [Mus musculus].
Length = 801
Score = 73.9 bits (180), Expect = 2e-13
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 17/209 (8%)
Frame = +3
Query: 249 SSKFLAPYTTFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFD 428
S L T R H K I L + K+W +L V GH
Sbjct: 464 SGPVLLQAQTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRG 523
Query: 429 VNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSR 608
+ +F P+ V+ + D +K+W+ +D SC+ TF+GH +L A V RG ++S
Sbjct: 524 LWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGS 583
Query: 609 DGTARLWDCGRSACLGVI---------ADCGCSINGVAVGAADNSINL--------GSPE 737
DG +LW + C+ + C + G +D+ I L + E
Sbjct: 584 DGLLKLWTIKSNECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWKDVTEAEQAEE 643
Query: 738 QTPSEREVGTESKMLLLAREDKKLQCVGL 824
Q E +V + ++ L E + L+ +GL
Sbjct: 644 QAKREEQVIKQQELDNLLHEKRYLRALGL 672
>ref|NP_038653.1| platelet-activating factor acetylhydrolase IB subunit alpha [Mus
musculus].
Length = 410
Score = 69.7 bits (169), Expect = 4e-12
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 3/196 (1%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W G+ R L+GH V F SG ++ S D +K+W + C+ T GH
Sbjct: 132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINL 725
+ AI+ G ++VS SRD T ++W+ C+ + V I
Sbjct: 192 DHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL---QSRQPVFLFIGSDAFNCCTFLSGF 896
S +QT V T+ L + ++C+ S + GS+ + G
Sbjct: 252 CSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK--SGKPGP 309
Query: 897 LLLAGTQDGNIYQLDV 944
LL+G++D I DV
Sbjct: 310 FLLSGSRDKTIKMWDV 325
Score = 53.9 bits (128), Expect = 2e-07
Identities = 36/120 (30%), Positives = 53/120 (44%)
Frame = +3
Query: 408 LEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGK 587
L GH V F P V++S DA +K+W E T KGH + D + GK
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 588 NVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTPSEREVGT 767
+ S S D T +LWD C+ + +++ VA+ + I S ++T EV T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQT 223
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/90 (28%), Positives = 41/90 (45%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W S G L GH V F G +LS D L++W ++ C+ T H
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDC 635
+ + + VV+GS D T ++W+C
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,953,251
Number of extensions: 1093198
Number of successful extensions: 4832
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 4588
Number of HSP's successfully gapped: 123
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003696
(1105 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129683.1| PREDICTED: proteasomal ATPase-associated fac... 691 0.0
Alignment gi|XP_001929370.2| PREDICTED: transcription initiation factor T... 79 3e-15
Alignment gi|XP_003354523.1| PREDICTED: guanine nucleotide-binding protei... 79 3e-15
Alignment gi|XP_003124417.1| PREDICTED: guanine nucleotide-binding protei... 79 3e-15
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 77 2e-14
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 75 6e-14
Alignment gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei... 70 2e-12
Alignment gi|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protei... 70 2e-12
Alignment gi|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protei... 70 2e-12
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase IB s... 69 6e-12
>ref|XP_003129683.1| PREDICTED: proteasomal ATPase-associated factor 1 [Sus scrofa].
Length = 392
Score = 691 bits (1784), Expect = 0.0
Identities = 344/361 (95%), Positives = 344/361 (95%)
Frame = +3
Query: 21 MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIGLDGIPEVIASEGFVVN 200
MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIGLDGIPEVIASEGFVVN
Sbjct: 1 MAAPLRIQSDWAQALRKDEGEAWLSCHPPGKPTLYGSLTCQGIGLDGIPEVIASEGFVVN 60
Query: 201 EINKKSIHISCPKENASSKFLAPYTTFSRIHAKSITCLDIXXXXXXXXXXXXXXXMKIWQ 380
EINKKSIHISCPKENASSKFLAPYTTFSRIHAKSITCLDI MKIWQ
Sbjct: 61 EINKKSIHISCPKENASSKFLAPYTTFSRIHAKSITCLDISSGGGLGVSSSTDGSMKIWQ 120
Query: 381 ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL 560
ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL
Sbjct: 121 ASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGIL 180
Query: 561 DTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQ 740
DTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQ
Sbjct: 181 DTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQ 240
Query: 741 TPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQD 920
TPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQD
Sbjct: 241 TPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQD 300
Query: 921 GNIYQLDVRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFIVQQDLDYVIELTGD 1100
GNIYQLDVRNPRAPVQVIHRS APVLSLLSFRDGFIASQGDGSSFIVQQDLDYVIELTG
Sbjct: 301 GNIYQLDVRNPRAPVQVIHRSGAPVLSLLSFRDGFIASQGDGSSFIVQQDLDYVIELTGA 360
Query: 1101 D 1103
D
Sbjct: 361 D 361
>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 662
Score = 79.3 bits (194), Expect = 3e-15
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
++W + + R+ GH+ DVNC RF P+ V +G D +++W + +CV F GHK
Sbjct: 472 RLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHK 531
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVI---ADCGCSING------VAVG 701
G I G+ + +G+ DG LWD G +G + D CS+ +A G
Sbjct: 532 GPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASG 591
Query: 702 AADNSINL 725
+ DN++ L
Sbjct: 592 SMDNTVRL 599
Score = 61.6 bits (148), Expect = 7e-10
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Frame = +3
Query: 402 RVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVER 581
++L GH V F P +LS D +++WS + +C+V +KGH + DT
Sbjct: 399 KILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPY 458
Query: 582 GKNVVSGSRDGTARLWDCGRSACL----GVIADCGC-----SINGVAVGAADNSINL 725
G VSG D ARLW L G +AD C + N VA G+AD ++ L
Sbjct: 459 GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 515
Score = 50.8 bits (120), Expect = 1e-06
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+++W +GH + V +F P G +SGG D ++W+ + + F GH
Sbjct: 429 VRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGH 488
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACL-------GVIADCGCSING--VAV 698
+ T V +GS D T RLWD C+ G I S NG +A
Sbjct: 489 LADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLAT 548
Query: 699 GAADNSINL 725
GA D + L
Sbjct: 549 GATDGRVLL 557
>ref|XP_003354523.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit
beta-2-like, partial [Sus scrofa].
Length = 308
Score = 79.3 bits (194), Expect = 3e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF ++ S G D +W E V F GH G ++
Sbjct: 100 NVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSL 158
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ G+ VSG+ D + +LWD S C IN VA + GS + T
Sbjct: 159 SLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATC 218
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++L+ + ++ + I S AF+ SG LLLAG D N
Sbjct: 219 RLFDLRADQELLMYSHDN-------------IICGITSVAFS----RSGRLLLAGYDDFN 261
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 262 CNIWDAMKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 304
Score = 63.2 bits (152), Expect = 3e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 136 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 195
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 196 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 255
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 256 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 288
>ref|XP_003124417.1| PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit
beta-2-like isoform 2 [Sus scrofa].
Length = 340
Score = 79.3 bits (194), Expect = 3e-15
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N + R L GH ++CCRF ++ S G D +W E V F GH G ++
Sbjct: 132 NVRVSRELPGHTGYLSCCRFLDDNQIITSSG-DTTCALWDIETGQQTVGFAGHSGDVMSL 190
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTP 746
++ G+ VSG+ D + +LWD S C IN VA + GS + T
Sbjct: 191 SLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATC 250
Query: 747 SEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLAGTQDGN 926
++ + ++L+ + ++ + I S AF+ SG LLLAG D N
Sbjct: 251 RLFDLRADQELLMYSHDN-------------IICGITSVAFS----RSGRLLLAGYDDFN 293
Query: 927 IYQLD-VRNPRAPVQVIHRSRAPVLSLLSFRDGFIASQGDGSSFI 1058
D ++ RA V H +R L + DG + G SF+
Sbjct: 294 CNIWDAMKGDRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFL 336
Score = 63.2 bits (152), Expect = 3e-10
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
+W G+ GH DV P G +SG DA +K+W D+ C TF GH+
Sbjct: 168 LWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHES 227
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIA--DCGCSINGVAVGAADNSINL 725
I A G +GS D T RL+D L + + + C I VA + +
Sbjct: 228 DINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLA 287
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL 824
G + + + + +LA D ++ C+G+
Sbjct: 288 GYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGV 320
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 76.6 bits (187), Expect = 2e-14
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 5/194 (2%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+KIW G+ + L+GH V CC F P +++SG D +KIW + C+ T H
Sbjct: 107 LKIWDVRVGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDESVKIWEVKTGRCLKTLSAH 166
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINL 725
+ +G +VSGS DG R+WD CL + D D++ +
Sbjct: 167 SDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTLVD-------------DDNPPI 213
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTF-----LS 890
+ +P+ K +L+A D L+ + + + G C F S
Sbjct: 214 SFVKFSPN-------GKYILIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTS 266
Query: 891 GFLLLAGTQDGNIY 932
G +++G++D +Y
Sbjct: 267 GKWIVSGSEDNLVY 280
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/120 (24%), Positives = 52/120 (43%)
Frame = +3
Query: 372 IWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKG 551
IW A +G+ + L+GH +++ + ++S D LKIW C+ T KGH
Sbjct: 67 IWGAYDGKYEKALKGHSLEISDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLKGHSN 126
Query: 552 GILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGS 731
+ ++SGS D + ++W+ CL ++ ++ V + I GS
Sbjct: 127 YVFCCNFNPPSNLIISGSFDESVKIWEVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGS 186
Score = 52.8 bits (125), Expect = 3e-07
Identities = 47/185 (25%), Positives = 71/185 (38%)
Frame = +3
Query: 369 KIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHK 548
++ + N L+ L GH V+ +F P+G + S D + IW A D KGH
Sbjct: 24 QVAEKPNYTLKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKALKGHS 83
Query: 549 GGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLG 728
I D A +VS S D T ++WD CL + + N I G
Sbjct: 84 LEISDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLKGHSNYVFCCNFNPPSNLIISG 143
Query: 729 SPEQTPSEREVGTESKMLLLAREDKKLQCVGLQSRQPVFLFIGSDAFNCCTFLSGFLLLA 908
S +++ EV T + L+ + V FNC G L+++
Sbjct: 144 SFDESVKIWEVKTGRCLKTLSAHSDPVSAV---------------HFNC----KGSLIVS 184
Query: 909 GTQDG 923
G+ DG
Sbjct: 185 GSYDG 189
Score = 52.4 bits (124), Expect = 5e-07
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 369 KIWQASNGE-LRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+IW A++G+ L+ +++ ++ +F P+G +L +D LK+W C+ T+ GH
Sbjct: 192 RIWDAASGQCLKTLVDDDNPPISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGH 251
Query: 546 KGG---ILDTAIVERGKNVVSGSRDGTARLWD 632
K I V GK +VSGS D +W+
Sbjct: 252 KNEKYCIFANFSVTSGKWIVSGSEDNLVYIWN 283
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 75.1 bits (183), Expect = 6e-14
Identities = 33/101 (32%), Positives = 49/101 (48%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+KIW S+G+ + L+GH V CC F P +++SG D ++IW + C+ T H
Sbjct: 111 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIAD 668
+ G +VS S DG R+WD CL + D
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Score = 61.2 bits (147), Expect = 1e-09
Identities = 30/121 (24%), Positives = 51/121 (42%)
Frame = +3
Query: 291 HAKSITCLDIXXXXXXXXXXXXXXXMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVL 470
H K+++ + +KIW A +G+ + + GH ++ + +++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 471 SGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGKNVVSGSRDGTARLWDCGRSAC 650
S D LKIW C+ T KGH + + +VSGS D + R+WD C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 651 L 653
L
Sbjct: 164 L 164
Score = 59.3 bits (142), Expect = 4e-09
Identities = 33/89 (37%), Positives = 42/89 (47%)
Frame = +3
Query: 387 NGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDT 566
N L+ L GH V+ +F P+G + S D +KIW A D T GHK GI D
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 567 AIVERGKNVVSGSRDGTARLWDCGRSACL 653
A +VS S D T ++WD CL
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCL 122
Score = 53.1 bits (126), Expect = 3e-07
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 369 KIWQASNGE-LRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+IW ++G+ L+ +++ V+ +F P+G +L+ +D LK+W C+ T+ GH
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 546 KGG---ILDTAIVERGKNVVSGSRDGTARLWD 632
K I V GK +VSGS D +W+
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
scrofa].
Length = 589
Score = 70.1 bits (170), Expect = 2e-12
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 19/247 (7%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W A G+ R L GH V + + +++SG D LK+W+AE C+ T GH
Sbjct: 285 LKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGH 342
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSI-------NGVAVGA 704
+ + E K VVSGSRD T R+WD CL V+ ++ V GA
Sbjct: 343 TSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 400
Query: 705 ADNSINLGSPE-QTPSEREVGTESKMLLLARE---------DKKLQCVGLQSRQPVFLFI 854
D + + PE +T G +++ L + D ++ +++ +
Sbjct: 401 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 460
Query: 855 GSDAFNCCTFLSGFLLLAGTQDGNIYQLDVRNPRA--PVQVIHRSRAPVLSLLSFRDGFI 1028
G + L +L++G D + D++ + +Q ++ ++ V L ++ I
Sbjct: 461 GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 520
Query: 1029 ASQGDGS 1049
S DG+
Sbjct: 521 TSSDDGT 527
Score = 52.0 bits (123), Expect = 6e-07
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Frame = +3
Query: 390 GELR--RVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILD 563
GEL+ +VL+GH V C SG D LK+WSA C+ T GH GG+
Sbjct: 250 GELKSPKVLKGHDDHVITCXXXXXXXXX-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 308
Query: 564 TAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQT 743
+ + R ++SGS D T ++W+ C+ + ++ + + + GS + T
Sbjct: 309 SQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDAT 364
Query: 744 PSEREVGTESKMLLLAREDKKLQCVGLQSRQPV 842
++ T + +L ++CV R+ V
Sbjct: 365 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV 397
>ref|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 2 [Sus
scrofa].
Length = 705
Score = 70.1 bits (170), Expect = 2e-12
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 19/247 (7%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W A G+ R L GH V + + +++SG D LK+W+AE C+ T GH
Sbjct: 401 LKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGH 458
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSI-------NGVAVGA 704
+ + E K VVSGSRD T R+WD CL V+ ++ V GA
Sbjct: 459 TSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 516
Query: 705 ADNSINLGSPE-QTPSEREVGTESKMLLLARE---------DKKLQCVGLQSRQPVFLFI 854
D + + PE +T G +++ L + D ++ +++ +
Sbjct: 517 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 576
Query: 855 GSDAFNCCTFLSGFLLLAGTQDGNIYQLDVRNPRA--PVQVIHRSRAPVLSLLSFRDGFI 1028
G + L +L++G D + D++ + +Q ++ ++ V L ++ I
Sbjct: 577 GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 636
Query: 1029 ASQGDGS 1049
S DG+
Sbjct: 637 TSSDDGT 643
Score = 52.0 bits (123), Expect = 6e-07
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Frame = +3
Query: 390 GELR--RVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILD 563
GEL+ +VL+GH V C SG D LK+WSA C+ T GH GG+
Sbjct: 366 GELKSPKVLKGHDDHVITCXXXXXXXXX-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 424
Query: 564 TAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQT 743
+ + R ++SGS D T ++W+ C+ + ++ + + + GS + T
Sbjct: 425 SQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDAT 480
Query: 744 PSEREVGTESKMLLLAREDKKLQCVGLQSRQPV 842
++ T + +L ++CV R+ V
Sbjct: 481 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV 513
>ref|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 1 [Sus
scrofa].
Length = 627
Score = 70.1 bits (170), Expect = 2e-12
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 19/247 (7%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W A G+ R L GH V + + +++SG D LK+W+AE C+ T GH
Sbjct: 323 LKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGH 380
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSI-------NGVAVGA 704
+ + E K VVSGSRD T R+WD CL V+ ++ V GA
Sbjct: 381 TSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 438
Query: 705 ADNSINLGSPE-QTPSEREVGTESKMLLLARE---------DKKLQCVGLQSRQPVFLFI 854
D + + PE +T G +++ L + D ++ +++ +
Sbjct: 439 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 498
Query: 855 GSDAFNCCTFLSGFLLLAGTQDGNIYQLDVRNPRA--PVQVIHRSRAPVLSLLSFRDGFI 1028
G + L +L++G D + D++ + +Q ++ ++ V L ++ I
Sbjct: 499 GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 558
Query: 1029 ASQGDGS 1049
S DG+
Sbjct: 559 TSSDDGT 565
Score = 52.0 bits (123), Expect = 6e-07
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Frame = +3
Query: 390 GELR--RVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILD 563
GEL+ +VL+GH V C SG D LK+WSA C+ T GH GG+
Sbjct: 288 GELKSPKVLKGHDDHVITCXXXXXXXXX-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 346
Query: 564 TAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQT 743
+ + R ++SGS D T ++W+ C+ + ++ + + + GS + T
Sbjct: 347 SQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDAT 402
Query: 744 PSEREVGTESKMLLLAREDKKLQCVGLQSRQPV 842
++ T + +L ++CV R+ V
Sbjct: 403 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV 435
>ref|NP_999415.1| platelet-activating factor acetylhydrolase IB subunit alpha [Sus
scrofa].
Length = 410
Score = 68.6 bits (166), Expect = 6e-12
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 3/196 (1%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W G+ R L+GH V F SG ++ S D +K+W + C+ T GH
Sbjct: 132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINL 725
+ AI+ G ++VS +RD T ++W+ C+ + V I
Sbjct: 192 DHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251
Query: 726 GSPEQTPSEREVGTESKMLLLAREDKKLQCVGL---QSRQPVFLFIGSDAFNCCTFLSGF 896
S +QT V T+ L + ++C+ S + GS+ + G
Sbjct: 252 CSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK--SGKPGP 309
Query: 897 LLLAGTQDGNIYQLDV 944
LL+G++D I DV
Sbjct: 310 FLLSGSRDKTIKMWDV 325
Score = 52.8 bits (125), Expect = 3e-07
Identities = 35/120 (29%), Positives = 53/120 (44%)
Frame = +3
Query: 408 LEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVERGK 587
L GH V F P V++S DA +K+W E T KGH + D + GK
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 588 NVVSGSRDGTARLWDCGRSACLGVIADCGCSINGVAVGAADNSINLGSPEQTPSEREVGT 767
+ S S D T +LWD C+ + +++ VA+ + I + ++T EV T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQT 223
Score = 50.8 bits (120), Expect = 1e-06
Identities = 26/90 (28%), Positives = 41/90 (45%)
Frame = +3
Query: 366 MKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGH 545
+K+W S G L GH V F G +LS D L++W ++ C+ T H
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Query: 546 KGGILDTAIVERGKNVVSGSRDGTARLWDC 635
+ + + VV+GS D T ++W+C
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,526,555
Number of extensions: 813478
Number of successful extensions: 3521
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 3326
Number of HSP's successfully gapped: 85
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003696
(1105 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 392 e-106
>Sscrofa_Chr09
|| Length = 153670197
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 551 aggtatcctagatacagctattgttgagcggggcaagaatgtggtatctggttctcgaga 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9101191 aggtatcctagatacagctattgttgagcggggcaagaatgtggtatctggttctcgaga 9101250
Query: 611 tgggacagctcgactttgggattgcggccgctcagcctgcctgggagtcattgcagactg 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9101251 tgggacagctcgactttgggattgcggccgctcagcctgcctgggagtcattgcagactg 9101310
Query: 671 tggttgttccatcaatggagtggctgtgggtgctgctgacaactctataaacctcggctc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9101311 tggttgttccatcaatggagtggctgtgggtgctgctgacaactctataaacctcggctc 9101370
Query: 731 ccctgagcagacacccag 748
||||||||||||||||||
Sbjct: 9101371 ccctgagcagacacccag 9101388
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 401 gagagtattggaaggacatgtgtttgatgtgaattgttgcaggtttttcccatcaggcct 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9090807 gagagtattggaaggacatgtgtttgatgtgaattgttgcaggtttttcccatcaggcct 9090866
Query: 461 tgtggttctgagtgggggaatggacgcccagctgaagatctggtcagctgaagatgctag 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9090867 tgtggttctgagtgggggaatggacgcccagctgaagatctggtcagctgaagatgctag 9090926
Query: 521 ctgcgtagtgacctttaaaggtcacaaaggaggtat 556
||||||||||||||||||||||||||||||||||||
Sbjct: 9090927 ctgcgtagtgacctttaaaggtcacaaaggaggtat 9090962
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 839 ggtgttcctctttattggctcagatgccttcaactgctgtacttttctctctggcttctt 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9109115 ggtgttcctctttattggctcagatgccttcaactgctgtacttttctctctggcttctt 9109174
Query: 899 gctcttggctgggacacaggatggaaacatttatcagctggatgtgaggaatccaagg 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9109175 gctcttggctgggacacaggatggaaacatttatcagctggatgtgaggaatccaagg 9109232
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 107 agggaaaccaactttgtacggcagcctgacttgtcaaggaattggccttgatggcatccc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9075663 agggaaaccaactttgtacggcagcctgacttgtcaaggaattggccttgatggcatccc 9075722
Query: 167 agaggttatagcttcggaaggatttgttgtgaatgaaataaacaag 212
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9075723 agaggttatagcttcggaaggatttgttgtgaatgaaataaacaag 9075768
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 303 ataacatgcctggacatttccagcggaggaggccttggggtgtcttctagtaccgatggg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9089546 ataacatgcctggacatttccagcggaggaggccttggggtgtcttctagtaccgatggg 9089605
Query: 363 agcatgaaaatctggcaggcttccaatggagagctcagg 401
|||||||||||||||||||||||||||||||||||||||
Sbjct: 9089606 agcatgaaaatctggcaggcttccaatggagagctcagg 9089644
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 748 gcgaacgggaggttggaacagagtcgaaaatgctgctgttggcccgcgaagataagaaac 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9106852 gcgaacgggaggttggaacagagtcgaaaatgctgctgttggcccgcgaagataagaaac 9106911
Query: 808 ttcagtgtgtgggactgcagagcaggcagccgg 840
|||||||||||||||||||||||||||||||||
Sbjct: 9106912 ttcagtgtgtgggactgcagagcaggcagccgg 9106944
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 211 agaagagcattcatatttcatgtccaaaggaaaatgcatcttcgaagtttttggcaccat 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9082113 agaagagcattcatatttcatgtccaaaggaaaatgcatcttcgaagtttttggcaccat 9082172
Query: 271 atactactttttcaaggattcatgcaaagagt 302
||||||||||||||||||||||||||||||||
Sbjct: 9082173 atactactttttcaaggattcatgcaaagagt 9082204
Score = 172 bits (87), Expect = 3e-40
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 947 gaatccaagggctccggtacaagtcatccacagatcaagagcgccagtcctgtccctgct 1006
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 9110912 gaatcccagggctccggtacaagtcatccacagatcaggagcgccagtcctgtccctgct 9110971
Query: 1007 gagtttcagagacggattcattgctagccaaggtg 1041
|||||||||||||||||||||||||||||||||||
Sbjct: 9110972 gagtttcagagacggattcattgctagccaaggtg 9111006
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctggtggaggcggggtcaagatggcggcgcctttgaggattcagagcgactgggctcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9070496 ctggtggaggcggggtcaagatggcggcgcctttgaggattcagagcgactgggctcaag 9070555
Query: 61 ccctcagg 68
||||||||
Sbjct: 9070556 ccctcagg 9070563
Score = 129 bits (65), Expect = 4e-27
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1037 aggtgatggaagctctttcattgtccagcaagacttagactatgtcattgagctcactgg 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9121127 aggtgatggaagctctttcattgtccagcaagacttagactatgtcattgagctcactgg 9121186
Query: 1097 ggatgactg 1105
|| ||||||
Sbjct: 9121187 ggctgactg 9121195
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 66 aggaaggatgaaggggaggcctggctgagctgtcaccccccagg 109
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9071876 aggaaggatgaaggggaggcctggctgagctgtcaccccccagg 9071919
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,276,736
Number of extensions: 182
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 11
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)