Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003699
(904 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193099.1| dihydrolipoyl dehydrogenase, mitochondrial [... 525 e-149
Alignment gi|XP_002686825.1| PREDICTED: dihydrolipoamide dehydrogenase [B... 525 e-149
Alignment gi|NP_777050.1| thioredoxin reductase 1, cytoplasmic [Bos tauru... 107 1e-23
Alignment gi|NP_001107662.1| glutathione reductase, mitochondrial [Bos ta... 93 4e-19
Alignment gi|XP_002697197.1| PREDICTED: thioredoxin reductase 3 [Bos taur... 87 2e-17
Alignment gi|NP_777051.1| thioredoxin reductase 2, mitochondrial precurso... 77 2e-14
>ref|NP_001193099.1| dihydrolipoyl dehydrogenase, mitochondrial [Bos taurus].
Length = 509
Score = 525 bits (1352), Expect = e-149
Identities = 258/273 (94%), Positives = 270/273 (98%)
Frame = +3
Query: 84 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 263
MQSWSRVYC+L KRGHF+RI+HGLQGVS VPLRTYADQPIDADVTVIGSGPGGYVAAIKA
Sbjct: 1 MQSWSRVYCSLVKRGHFSRISHGLQGVSVVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 264 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 443
AQLGFKTVC+EKNETLGGTCLNVGCIPSKALLNNSH+YH+AHGKDFASRGIEMSEVRLNL
Sbjct: 61 AQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHFYHLAHGKDFASRGIEMSEVRLNL 120
Query: 444 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 623
EKMMEQKSNAVKALTGGIAHLFKQNKVV VNGYGKITGKNQVTATKADGST+VI+TKNIL
Sbjct: 121 EKMMEQKSNAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGSTQVIDTKNIL 180
Query: 624 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 803
IATGSEVTPFPGITIDEDT+VSSTGALSLKKVPEK+VVIGAGVIGVELGSVWQRLGADVT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVT 240
Query: 804 AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 902
AVEFLGHVGG+GIDME+SKNFQRILQKQGFKFK
Sbjct: 241 AVEFLGHVGGVGIDMEISKNFQRILQKQGFKFK 273
>ref|XP_002686825.1| PREDICTED: dihydrolipoamide dehydrogenase [Bos taurus].
Length = 509
Score = 525 bits (1352), Expect = e-149
Identities = 258/273 (94%), Positives = 270/273 (98%)
Frame = +3
Query: 84 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 263
MQSWSRVYC+L KRGHF+RI+HGLQGVS VPLRTYADQPIDADVTVIGSGPGGYVAAIKA
Sbjct: 1 MQSWSRVYCSLVKRGHFSRISHGLQGVSVVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 264 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 443
AQLGFKTVC+EKNETLGGTCLNVGCIPSKALLNNSH+YH+AHGKDFASRGIEMSEVRLNL
Sbjct: 61 AQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHFYHLAHGKDFASRGIEMSEVRLNL 120
Query: 444 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 623
EKMMEQKSNAVKALTGGIAHLFKQNKVV VNGYGKITGKNQVTATKADGST+VI+TKNIL
Sbjct: 121 EKMMEQKSNAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGSTQVIDTKNIL 180
Query: 624 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 803
IATGSEVTPFPGITIDEDT+VSSTGALSLKKVPEK+VVIGAGVIGVELGSVWQRLGADVT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVT 240
Query: 804 AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 902
AVEFLGHVGG+GIDME+SKNFQRILQKQGFKFK
Sbjct: 241 AVEFLGHVGGVGIDMEISKNFQRILQKQGFKFK 273
>ref|NP_777050.1| thioredoxin reductase 1, cytoplasmic [Bos taurus].
Length = 499
Score = 107 bits (267), Expect = 1e-23
Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 9/244 (3%)
Frame = +3
Query: 195 QPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSK 350
+P D D+ +IG G GG AA +AA+ K + ++ LGGTC+NVGCIP K
Sbjct: 9 EPYDYDLIIIGGGSGGLAAAKEAAKYDKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 68
Query: 351 ALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVV 527
L++ + A +D + G + E V+ + E+M E N + +L G ++ KV
Sbjct: 69 -LMHQAALLGQAL-RDSRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVT 126
Query: 528 RVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALS 707
N YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS S
Sbjct: 127 YENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFS 185
Query: 708 LKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQ 887
L P K +V+GA + +E +G DVT + + + G D +++ +Q+
Sbjct: 186 LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMQEH 243
Query: 888 GFKF 899
G KF
Sbjct: 244 GIKF 247
>ref|NP_001107662.1| glutathione reductase, mitochondrial [Bos taurus].
Length = 519
Score = 92.8 bits (229), Expect = 4e-19
Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 5/207 (2%)
Frame = +3
Query: 189 ADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNS 368
A I D VIG G GG +A +AA+LG + +E+++ LGGTC+NVGC+P K + N +
Sbjct: 56 AGAEISYDYLVIGGGSGGLASARRAAELGARAAVVERHK-LGGTCVNVGCVPKKVMWNTA 114
Query: 369 HYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGK 548
+ H D G + E + N + E++ V L + ++ + ++G+
Sbjct: 115 VHSEFMH--DHVDYGFQSCESKFNWRIIKEKRDAYVSRLNTIYQNNLTKSHIDIIHGHAA 172
Query: 549 ITGKNQVTATKADGSTEVINTKNILIATGS-----EVTPFPGITIDEDTVVSSTGALSLK 713
T Q T + + + +ILIATG + + PG ++ ++S G L+
Sbjct: 173 FTCDPQPT---VEVNGKKYTAPHILIATGGVPSVPQESQIPGASLG----ITSDGFFQLE 225
Query: 714 KVPEKMVVIGAGVIGVELGSVWQRLGA 794
++P + V++GAG I VE+ + LG+
Sbjct: 226 ELPRRSVIVGAGYIAVEIAGILSALGS 252
>ref|XP_002697197.1| PREDICTED: thioredoxin reductase 3 [Bos taurus].
Length = 790
Score = 87.4 bits (215), Expect = 2e-17
Identities = 72/249 (28%), Positives = 113/249 (45%), Gaps = 13/249 (5%)
Frame = +3
Query: 192 DQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPS 347
D D D+ VIG G GG A +AA LG K + ++ LGGTC+NVGCIP
Sbjct: 301 DPAYDYDLIVIGGGSGGLSCAQEAAVLGRKVMVLDFVVPSPRGTAWGLGGTCVNVGCIPK 360
Query: 348 K-----ALLNNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFK 512
K ALL + G +++ +VR + M E + + +L+ G +
Sbjct: 361 KLMHQAALLGQALTDSRKFGWEYS------QQVRHSWATMTEAIQSHIGSLSWGHRLALR 414
Query: 513 QNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSS 692
+ V VN +G+ ++V AT G + +IATG E + GI D + ++S
Sbjct: 415 EKAVTYVNSFGEFVEHHKVKATNEKGQEVLYTAAKFVIATG-ERPRYLGIPGDREYCITS 473
Query: 693 TGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQR 872
SL P +V+GA + +E LG +VT + + V G D E+++
Sbjct: 474 DDLFSLPYCPGATLVVGASYVALECAGFLAGLGLEVTVM--VRSVLLRGFDQEMAEKVGA 531
Query: 873 ILQKQGFKF 899
+Q+ G +F
Sbjct: 532 SMQQLGVRF 540
>ref|NP_777051.1| thioredoxin reductase 2, mitochondrial precursor [Bos taurus].
Length = 511
Score = 77.4 bits (189), Expect = 2e-14
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET--------LGGTCLNVGCIPSKALLNN 365
D+ VIG G GG A +AAQLG K ++ E LGGTC+NVGCIP K +
Sbjct: 29 DLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKKLM--- 85
Query: 366 SHYYHMAHG--KDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNG 539
H + G +D G +++ + + + N VK+L G + KV N
Sbjct: 86 -HQAALLGGMIRDAPHYGWGVAQAPHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNV 144
Query: 540 YGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKV 719
+ V G +++ ++I+IATG I + ++S LK+
Sbjct: 145 KASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGALEYGITSDDLFWLKES 204
Query: 720 PEKMVVIGAGVIGVELGSVWQRLGADVTAV 809
P K +V+GA + +E + LG D T +
Sbjct: 205 PGKTLVVGASYVALECAGLLTGLGLDTTVM 234
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,785,861
Number of extensions: 773798
Number of successful extensions: 2384
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2370
Number of HSP's successfully gapped: 6
Length of query: 301
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 199
Effective length of database: 14,306,398
Effective search space: 2846973202
Effective search space used: 2846973202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003699
(904 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003294.1| dihydrolipoyl dehydrogenase, mitochondrial p... 525 e-149
Alignment gi|XP_855591.1| PREDICTED: dihydrolipoamide: NAD+ oxidoreductas... 525 e-149
Alignment gi|NP_001116145.1| thioredoxin reductase 1, cytoplasmic [Canis ... 101 1e-21
Alignment gi|NP_001116250.1| thioredoxin reductase 3 [Canis lupus familia... 96 4e-20
Alignment gi|XP_532813.2| PREDICTED: similar to Glutathione reductase, mi... 91 2e-18
Alignment gi|XP_850181.1| PREDICTED: similar to thioredoxin reductase 2 i... 83 3e-16
>ref|NP_001003294.1| dihydrolipoyl dehydrogenase, mitochondrial precursor [Canis lupus
familiaris].
Length = 509
Score = 525 bits (1352), Expect = e-149
Identities = 260/273 (95%), Positives = 269/273 (98%)
Frame = +3
Query: 84 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 263
MQSWSRVYC+LAKRGHF+RI+HGLQ VSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA
Sbjct: 1 MQSWSRVYCSLAKRGHFSRISHGLQAVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 264 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 443
AQLGFKTVC+EKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL
Sbjct: 61 AQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120
Query: 444 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 623
EKMMEQKS AVKALTGGIAHLFKQNKVV VNGYGKITGKNQVTA KADGST+VI+TKNIL
Sbjct: 121 EKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTAKKADGSTQVIDTKNIL 180
Query: 624 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 803
IATGSEVTPFPGITIDEDT+VSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240
Query: 804 AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 902
AVEFLGHVGG+GIDME+SKNFQRILQKQGFKFK
Sbjct: 241 AVEFLGHVGGVGIDMEISKNFQRILQKQGFKFK 273
>ref|XP_855591.1| PREDICTED: dihydrolipoamide: NAD+ oxidoreductase [Canis
familiaris].
Length = 509
Score = 525 bits (1352), Expect = e-149
Identities = 260/273 (95%), Positives = 269/273 (98%)
Frame = +3
Query: 84 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 263
MQSWSRVYC+LAKRGHF+RI+HGLQ VSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA
Sbjct: 1 MQSWSRVYCSLAKRGHFSRISHGLQAVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 264 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 443
AQLGFKTVC+EKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL
Sbjct: 61 AQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120
Query: 444 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 623
EKMMEQKS AVKALTGGIAHLFKQNKVV VNGYGKITGKNQVTA KADGST+VI+TKNIL
Sbjct: 121 EKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTAKKADGSTQVIDTKNIL 180
Query: 624 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 803
IATGSEVTPFPGITIDEDT+VSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240
Query: 804 AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 902
AVEFLGHVGG+GIDME+SKNFQRILQKQGFKFK
Sbjct: 241 AVEFLGHVGGVGIDMEISKNFQRILQKQGFKFK 273
>ref|NP_001116145.1| thioredoxin reductase 1, cytoplasmic [Canis lupus familiaris].
Length = 655
Score = 101 bits (251), Expect = 1e-21
Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AA+ K + ++ LGGTC+NVGCIP K L+
Sbjct: 168 DYDLIIIGGGSGGLAAAKEAARYNKKIMVLDFVTPTPRGTRWGLGGTCVNVGCIPKK-LM 226
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A +D + G E V+ + +KM E N + +L G ++ KV N
Sbjct: 227 HQAALLGQAL-QDSRNYGWSTEETVKHDWDKMTEAVQNHIGSLNWGYRVALREKKVTYEN 285
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D + +SS SL
Sbjct: 286 AYGQFVGPHRIKATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDREYCISSDDLFSLPY 344
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 345 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGVK 402
Query: 897 F 899
F
Sbjct: 403 F 403
>ref|NP_001116250.1| thioredoxin reductase 3 [Canis lupus familiaris].
Length = 586
Score = 96.3 bits (238), Expect = 4e-20
Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 9/245 (3%)
Frame = +3
Query: 192 DQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPS 347
D D D+ VIG G GG A +AA LG K + ++ + LGGTC+NVGCIP
Sbjct: 95 DSAYDYDLIVIGGGSGGLACAQEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPK 154
Query: 348 KALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKV 524
K L++ + A +D G E S+ V+ E M E N + +L G ++ V
Sbjct: 155 K-LMHQAALLGQAL-RDARKFGWEYSQQVKHTWETMTEAIQNHIGSLNWGYRLSLREKAV 212
Query: 525 VRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGAL 704
VN YG+ +++ AT G ++ATG + GI D++ ++S
Sbjct: 213 AYVNSYGEFVEHHKIKATNRKGQETCYTAAKFVLATGQR-PRYLGIQGDKEYCITSDDLF 271
Query: 705 SLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQK 884
SL P K +V+GA + +E +G DVT + + + G D E+++ +++
Sbjct: 272 SLPYCPGKTLVVGASYVALECAGFLAGIGLDVTIM--VRSILLRGFDQEMAEKVGSYMEQ 329
Query: 885 QGFKF 899
G KF
Sbjct: 330 HGVKF 334
>ref|XP_532813.2| PREDICTED: similar to Glutathione reductase, mitochondrial
precursor (GR) (GRase) [Canis familiaris].
Length = 521
Score = 90.5 bits (223), Expect = 2e-18
Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 5/200 (2%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAH 389
D VIG G GG +A +AA+LG + +E ++ LGGTC+NVGC+P K + N + + H
Sbjct: 65 DYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMH 123
Query: 390 GKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQV 569
D G + E + N + E++ V L + ++ + ++G+ T ++
Sbjct: 124 --DHVDYGFQSCESKFNWRVIKEKRDAYVSRLNTIYQNNLTKSHIEIIHGHAAFTCDSEP 181
Query: 570 TATKADGSTEVINTKNILIATGS-----EVTPFPGITIDEDTVVSSTGALSLKKVPEKMV 734
T + +G+ +ILIATG + + PG ++ ++S G L+++P + V
Sbjct: 182 T-IEVNGNK--YTAPHILIATGGVPSRPQESQIPGASLG----ITSDGFFQLEELPGRSV 234
Query: 735 VIGAGVIGVELGSVWQRLGA 794
++GAG I VE+ + LG+
Sbjct: 235 IVGAGYIAVEIAGILSALGS 254
>ref|XP_850181.1| PREDICTED: similar to thioredoxin reductase 2 isoform 1 precursor
[Canis familiaris].
Length = 509
Score = 83.2 bits (204), Expect = 3e-16
Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 9/239 (3%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET--------LGGTCLNVGCIPSKALLNN 365
D+ VIG G GG A +AAQLG K ++ E LGGTC+NVGCIP K +
Sbjct: 28 DLLVIGGGSGGLACAKEAAQLGKKVAVVDYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQA 87
Query: 366 SHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGY 542
+ M +D G ++++ V + M E N VK+L G + KV N
Sbjct: 88 ALLGSMI--RDAPHYGWDVAQPVLHDWRTMAEAVQNHVKSLNWGHRVQLQDRKVTYFNVK 145
Query: 543 GKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVP 722
++ V G +++ ++I+IATG I + ++S LK+ P
Sbjct: 146 ASFVNEHTVCGVAKGGKETLLSAEHIVIATGGRPRYPTHIEGALEYGITSDDIFWLKESP 205
Query: 723 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFKF 899
K +V+GA + +E LG D T + + + G D ++S + QG +F
Sbjct: 206 GKTLVVGASYVALECAGFLTGLGLDTTIM--IRSIPLRGFDQQMSSLVTEYMASQGTRF 262
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,207,862
Number of extensions: 801720
Number of successful extensions: 2506
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2498
Number of HSP's successfully gapped: 6
Length of query: 301
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 199
Effective length of database: 15,474,232
Effective search space: 3079372168
Effective search space used: 3079372168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003699
(904 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000099.2| dihydrolipoyl dehydrogenase, mitochondrial prec... 528 e-150
Alignment gi|NP_877393.1| thioredoxin reductase 1, cytoplasmic isoform 2 ... 108 9e-24
Alignment gi|NP_001087240.1| thioredoxin reductase 1, cytoplasmic isoform... 108 9e-24
Alignment gi|NP_003321.3| thioredoxin reductase 1, cytoplasmic isoform 1 ... 108 9e-24
Alignment gi|NP_877420.1| thioredoxin reductase 1, cytoplasmic isoform 2 ... 108 9e-24
Alignment gi|NP_877419.1| thioredoxin reductase 1, cytoplasmic isoform 2 ... 108 9e-24
Alignment gi|NP_001166984.1| thioredoxin reductase 3 isoform 2 [Homo sapi... 96 4e-20
Alignment gi|NP_443115.1| thioredoxin reductase 3 isoform 1 [Homo sapiens]. 96 4e-20
Alignment gi|NP_001182033.1| glutathione reductase, mitochondrial isoform... 92 5e-19
Alignment gi|NP_001182032.1| glutathione reductase, mitochondrial isoform... 91 1e-18
>ref|NP_000099.2| dihydrolipoyl dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 509
Score = 528 bits (1360), Expect = e-150
Identities = 261/273 (95%), Positives = 270/273 (98%)
Frame = +3
Query: 84 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 263
MQSWSRVYC+LAKRGHFNRI+HGLQG+SAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA
Sbjct: 1 MQSWSRVYCSLAKRGHFNRISHGLQGLSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 264 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 443
AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL
Sbjct: 61 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120
Query: 444 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 623
+KMMEQKS AVKALTGGIAHLFKQNKVV VNGYGKITGKNQVTATKADG T+VI+TKNIL
Sbjct: 121 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNIL 180
Query: 624 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 803
IATGSEVTPFPGITIDEDT+VSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240
Query: 804 AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 902
AVEFLGHVGG+GIDME+SKNFQRILQKQGFKFK
Sbjct: 241 AVEFLGHVGGVGIDMEISKNFQRILQKQGFKFK 273
>ref|NP_877393.1| thioredoxin reductase 1, cytoplasmic isoform 2 [Homo sapiens].
Length = 499
Score = 108 bits (269), Expect = 9e-24
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AAQ G K + ++ LGGTC+NVGCIP K L+
Sbjct: 12 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 70
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A +D + G ++ E V+ + ++M+E N + +L G ++ KVV N
Sbjct: 71 HQAALLGQAL-QDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN 129
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 130 AYGQFIGPHRIKATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 188
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 189 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIK 246
Query: 897 F 899
F
Sbjct: 247 F 247
>ref|NP_001087240.1| thioredoxin reductase 1, cytoplasmic isoform 3 [Homo sapiens].
Length = 649
Score = 108 bits (269), Expect = 9e-24
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AAQ G K + ++ LGGTC+NVGCIP K L+
Sbjct: 162 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 220
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A +D + G ++ E V+ + ++M+E N + +L G ++ KVV N
Sbjct: 221 HQAALLGQAL-QDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN 279
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 280 AYGQFIGPHRIKATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 338
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 339 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIK 396
Query: 897 F 899
F
Sbjct: 397 F 397
>ref|NP_003321.3| thioredoxin reductase 1, cytoplasmic isoform 1 [Homo sapiens].
Length = 551
Score = 108 bits (269), Expect = 9e-24
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AAQ G K + ++ LGGTC+NVGCIP K L+
Sbjct: 64 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 122
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A +D + G ++ E V+ + ++M+E N + +L G ++ KVV N
Sbjct: 123 HQAALLGQAL-QDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN 181
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 182 AYGQFIGPHRIKATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 240
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 241 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIK 298
Query: 897 F 899
F
Sbjct: 299 F 299
>ref|NP_877420.1| thioredoxin reductase 1, cytoplasmic isoform 2 [Homo sapiens].
Length = 499
Score = 108 bits (269), Expect = 9e-24
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AAQ G K + ++ LGGTC+NVGCIP K L+
Sbjct: 12 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 70
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A +D + G ++ E V+ + ++M+E N + +L G ++ KVV N
Sbjct: 71 HQAALLGQAL-QDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN 129
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 130 AYGQFIGPHRIKATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 188
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 189 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIK 246
Query: 897 F 899
F
Sbjct: 247 F 247
>ref|NP_877419.1| thioredoxin reductase 1, cytoplasmic isoform 2 [Homo sapiens].
Length = 499
Score = 108 bits (269), Expect = 9e-24
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AAQ G K + ++ LGGTC+NVGCIP K L+
Sbjct: 12 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 70
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A +D + G ++ E V+ + ++M+E N + +L G ++ KVV N
Sbjct: 71 HQAALLGQAL-QDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN 129
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 130 AYGQFIGPHRIKATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 188
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 189 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIK 246
Query: 897 F 899
F
Sbjct: 247 F 247
>ref|NP_001166984.1| thioredoxin reductase 3 isoform 2 [Homo sapiens].
Length = 607
Score = 95.9 bits (237), Expect = 4e-20
Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 13/249 (5%)
Frame = +3
Query: 192 DQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPS 347
D D D+ +IG G GG A +AA LG K + ++ + LGGTC+NVGCIP
Sbjct: 152 DLAYDYDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPK 211
Query: 348 K-----ALLNNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFK 512
K ALL + G ++ +VR N E M + N + +L G +
Sbjct: 212 KLMHQAALLGQALCDSRKFGWEYNQ------QVRHNWETMTKAIQNHISSLNWGYRLSLR 265
Query: 513 QNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSS 692
+ V VN YG+ +++ AT G +IATG E + GI D++ ++S
Sbjct: 266 EKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATG-ERPRYLGIQGDKEYCITS 324
Query: 693 TGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQR 872
SL P K +V+GA + +E G DVT + + + G D E+++
Sbjct: 325 DDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVM--VRSILLRGFDQEMAEKVGS 382
Query: 873 ILQKQGFKF 899
+++ G KF
Sbjct: 383 YMEQHGVKF 391
>ref|NP_443115.1| thioredoxin reductase 3 isoform 1 [Homo sapiens].
Length = 643
Score = 95.9 bits (237), Expect = 4e-20
Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 13/249 (5%)
Frame = +3
Query: 192 DQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPS 347
D D D+ +IG G GG A +AA LG K + ++ + LGGTC+NVGCIP
Sbjct: 152 DLAYDYDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPK 211
Query: 348 K-----ALLNNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFK 512
K ALL + G ++ +VR N E M + N + +L G +
Sbjct: 212 KLMHQAALLGQALCDSRKFGWEYNQ------QVRHNWETMTKAIQNHISSLNWGYRLSLR 265
Query: 513 QNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSS 692
+ V VN YG+ +++ AT G +IATG E + GI D++ ++S
Sbjct: 266 EKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATG-ERPRYLGIQGDKEYCITS 324
Query: 693 TGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQR 872
SL P K +V+GA + +E G DVT + + + G D E+++
Sbjct: 325 DDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVM--VRSILLRGFDQEMAEKVGS 382
Query: 873 ILQKQGFKF 899
+++ G KF
Sbjct: 383 YMEQHGVKF 391
>ref|NP_001182033.1| glutathione reductase, mitochondrial isoform 4 precursor [Homo
sapiens].
Length = 440
Score = 92.4 bits (228), Expect = 5e-19
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 1/213 (0%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAH 389
D VIG G GG +A +AA+LG + +E ++ LGGTC+NVGC+P K + N + + H
Sbjct: 66 DYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMH 124
Query: 390 GKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQV 569
D A G E + N + E++ V L + ++ + + G+ T +
Sbjct: 125 --DHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKP 182
Query: 570 TATKADGSTEVINTKNILIATGS-EVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGA 746
T + S + +ILIATG TP ++S G L+++P + V++GA
Sbjct: 183 T---IEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGA 239
Query: 747 GVIGVELGSVWQRLGADVTAVEFLGHVGGIGID 845
G I VE+ + LG+ + + + H GI D
Sbjct: 240 GYIAVEMAGILSALGSKTSLM--IRHDKGIQTD 270
>ref|NP_001182032.1| glutathione reductase, mitochondrial isoform 3 precursor [Homo
sapiens].
Length = 469
Score = 91.3 bits (225), Expect = 1e-18
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 1/196 (0%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAH 389
D VIG G GG +A +AA+LG + +E ++ LGGTC+NVGC+P K + N + + H
Sbjct: 66 DYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMH 124
Query: 390 GKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQV 569
D A G E + N + E++ V L + ++ + + G+ T +
Sbjct: 125 --DHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKP 182
Query: 570 TATKADGSTEVINTKNILIATGS-EVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGA 746
T + S + +ILIATG TP ++S G L+++P + V++GA
Sbjct: 183 T---IEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGA 239
Query: 747 GVIGVELGSVWQRLGA 794
G I VE+ + LG+
Sbjct: 240 GYIAVEMAGILSALGS 255
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,690,522
Number of extensions: 795735
Number of successful extensions: 2457
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2427
Number of HSP's successfully gapped: 13
Length of query: 301
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 199
Effective length of database: 14,934,836
Effective search space: 2972032364
Effective search space used: 2972032364
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003699
(904 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031887.2| dihydrolipoyl dehydrogenase, mitochondrial prec... 513 e-146
Alignment gi|NP_001035988.1| thioredoxin reductase 1, cytoplasmic isoform... 105 5e-23
Alignment gi|NP_001035979.1| thioredoxin reductase 1, cytoplasmic isoform... 105 5e-23
Alignment gi|NP_001035978.1| thioredoxin reductase 1, cytoplasmic isoform... 105 5e-23
Alignment gi|NP_056577.2| thioredoxin reductase 1, cytoplasmic isoform 2 ... 105 5e-23
Alignment gi|NP_694802.2| thioredoxin reductase 3 isoform 2 [Mus musculus]. 100 2e-21
Alignment gi|NP_001171529.1| thioredoxin reductase 3 isoform 1 [Mus muscu... 100 2e-21
Alignment gi|NP_034474.4| glutathione reductase, mitochondrial precursor ... 88 8e-18
Alignment gi|NP_038739.2| thioredoxin reductase 2, mitochondrial precurso... 82 4e-16
Alignment gi|NP_001171531.1| thioredoxin reductase 3 isoform 4 [Mus muscu... 60 2e-09
>ref|NP_031887.2| dihydrolipoyl dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 509
Score = 513 bits (1322), Expect = e-146
Identities = 253/273 (92%), Positives = 269/273 (98%)
Frame = +3
Query: 84 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 263
MQSWSRVY +LAK+GHFNRI+HGLQGVS+VPLRTYADQPI+ADVTVIGSGPGGYVAAIK+
Sbjct: 1 MQSWSRVYRSLAKKGHFNRISHGLQGVSSVPLRTYADQPIEADVTVIGSGPGGYVAAIKS 60
Query: 264 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 443
AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIE+ EVRLNL
Sbjct: 61 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEIPEVRLNL 120
Query: 444 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 623
EKMMEQK +AVKALTGGIAHLFKQNKVV VNG+GKITGKNQVTATKADGST+VI+TKNIL
Sbjct: 121 EKMMEQKHSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSTQVIDTKNIL 180
Query: 624 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 803
+ATGSEVTPFPGITIDEDT+VSSTGALSLKKVPEK+VVIGAGVIGVELGSVWQRLGADVT
Sbjct: 181 VATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVT 240
Query: 804 AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 902
AVEFLGHVGGIGIDME+SKNFQRILQ+QGFKFK
Sbjct: 241 AVEFLGHVGGIGIDMEISKNFQRILQRQGFKFK 273
>ref|NP_001035988.1| thioredoxin reductase 1, cytoplasmic isoform 1 [Mus musculus].
Length = 613
Score = 105 bits (262), Expect = 5e-23
Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AA+ K + ++ LGGTC+NVGCIP K L+
Sbjct: 126 DFDLIIIGGGSGGLAAAKEAAKFDKKVLVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 184
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A KD + G ++ + V+ + EKM E + + +L G ++ KVV N
Sbjct: 185 HQAALLGQAL-KDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYEN 243
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 244 AYGRFIGPHRIVATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 302
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 303 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIK 360
Query: 897 F 899
F
Sbjct: 361 F 361
>ref|NP_001035979.1| thioredoxin reductase 1, cytoplasmic isoform 2 [Mus musculus].
Length = 499
Score = 105 bits (262), Expect = 5e-23
Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AA+ K + ++ LGGTC+NVGCIP K L+
Sbjct: 12 DFDLIIIGGGSGGLAAAKEAAKFDKKVLVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 70
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A KD + G ++ + V+ + EKM E + + +L G ++ KVV N
Sbjct: 71 HQAALLGQAL-KDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYEN 129
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 130 AYGRFIGPHRIVATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 188
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 189 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIK 246
Query: 897 F 899
F
Sbjct: 247 F 247
>ref|NP_001035978.1| thioredoxin reductase 1, cytoplasmic isoform 2 [Mus musculus].
Length = 499
Score = 105 bits (262), Expect = 5e-23
Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AA+ K + ++ LGGTC+NVGCIP K L+
Sbjct: 12 DFDLIIIGGGSGGLAAAKEAAKFDKKVLVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 70
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A KD + G ++ + V+ + EKM E + + +L G ++ KVV N
Sbjct: 71 HQAALLGQAL-KDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYEN 129
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 130 AYGRFIGPHRIVATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 188
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 189 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIK 246
Query: 897 F 899
F
Sbjct: 247 F 247
>ref|NP_056577.2| thioredoxin reductase 1, cytoplasmic isoform 2 [Mus musculus].
Length = 499
Score = 105 bits (262), Expect = 5e-23
Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AA+ K + ++ LGGTC+NVGCIP K L+
Sbjct: 12 DFDLIIIGGGSGGLAAAKEAAKFDKKVLVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 70
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A KD + G ++ + V+ + EKM E + + +L G ++ KVV N
Sbjct: 71 HQAALLGQAL-KDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYEN 129
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 130 AYGRFIGPHRIVATNNKGKEKIYSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 188
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 189 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIK 246
Query: 897 F 899
F
Sbjct: 247 F 247
>ref|NP_694802.2| thioredoxin reductase 3 isoform 2 [Mus musculus].
Length = 615
Score = 100 bits (248), Expect = 2e-21
Identities = 75/246 (30%), Positives = 116/246 (47%), Gaps = 9/246 (3%)
Frame = +3
Query: 192 DQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPS 347
D D D+ +IG G GG A +AA LG K + ++ LGGTC+NVGCIP
Sbjct: 124 DSAHDYDLIIIGGGSGGLSCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPK 183
Query: 348 KALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKV 524
K + + H +D G E ++ V+ N E M E + + +L G ++ V
Sbjct: 184 KLMHQAALLGHAL--QDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGV 241
Query: 525 VRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGAL 704
VN +G+ +++ AT G +IATG E + GI D++ ++S
Sbjct: 242 TYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATG-ERPRYLGIQGDKEYCITSDDLF 300
Query: 705 SLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQK 884
SL P +V+GA +G+E LG DVT + + V G D E+++ L++
Sbjct: 301 SLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVM--VRSVLLRGFDQEMAEKVGSYLEQ 358
Query: 885 QGFKFK 902
QG KF+
Sbjct: 359 QGVKFQ 364
>ref|NP_001171529.1| thioredoxin reductase 3 isoform 1 [Mus musculus].
Length = 652
Score = 100 bits (248), Expect = 2e-21
Identities = 75/246 (30%), Positives = 116/246 (47%), Gaps = 9/246 (3%)
Frame = +3
Query: 192 DQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPS 347
D D D+ +IG G GG A +AA LG K + ++ LGGTC+NVGCIP
Sbjct: 161 DSAHDYDLIIIGGGSGGLSCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPK 220
Query: 348 KALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKV 524
K + + H +D G E ++ V+ N E M E + + +L G ++ V
Sbjct: 221 KLMHQAALLGHAL--QDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGV 278
Query: 525 VRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGAL 704
VN +G+ +++ AT G +IATG E + GI D++ ++S
Sbjct: 279 TYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATG-ERPRYLGIQGDKEYCITSDDLF 337
Query: 705 SLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQK 884
SL P +V+GA +G+E LG DVT + + V G D E+++ L++
Sbjct: 338 SLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVM--VRSVLLRGFDQEMAEKVGSYLEQ 395
Query: 885 QGFKFK 902
QG KF+
Sbjct: 396 QGVKFQ 401
>ref|NP_034474.4| glutathione reductase, mitochondrial precursor [Mus musculus].
Length = 500
Score = 88.2 bits (217), Expect = 8e-18
Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 12/207 (5%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAH 389
D VIG G GG +A +AA+LG + +E ++ LGGTC+NVGC+P K + N + + H
Sbjct: 44 DYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMH 102
Query: 390 GKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQV 569
D G + E + + + +++ V L + ++ + ++GY
Sbjct: 103 --DHVDYGFQSCEGKFSWHVIKQKRDAYVSRLNTIYQNNLTKSHIEIIHGY--------- 151
Query: 570 TATKADG--STEVINTK-----NILIATGSEVT-----PFPGITIDEDTVVSSTGALSLK 713
AT ADG T +N K +ILIATG T PG ++ ++S G L+
Sbjct: 152 -ATFADGPRPTVEVNGKKFTAPHILIATGGVPTVPHESQIPGASLG----ITSDGFFQLE 206
Query: 714 KVPEKMVVIGAGVIGVELGSVWQRLGA 794
+P + V++GAG I VE+ + LG+
Sbjct: 207 DLPSRSVIVGAGYIAVEIAGILSALGS 233
>ref|NP_038739.2| thioredoxin reductase 2, mitochondrial precursor [Mus musculus].
Length = 527
Score = 82.4 bits (202), Expect = 4e-16
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 11/241 (4%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET--------LGGTCLNVGCIPSKALLNN 365
D+ VIG G GG A +AAQLG K + E LGGTC+NVGCIP K +
Sbjct: 44 DLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLM--- 100
Query: 366 SHYYHMAHG--KDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
H + G +D G E+++ V+ N + M E N VK+L G + KV N
Sbjct: 101 -HQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFN 159
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
++ V G +++ ++I+IATG + + ++S LK+
Sbjct: 160 IKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKE 219
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G D T + + + G D ++S ++ G +
Sbjct: 220 SPGKTLVVGASYVALECAGFLTGIGLDTTVM--MRSIPLRGFDQQMSSLVTEHMESHGTQ 277
Query: 897 F 899
F
Sbjct: 278 F 278
>ref|NP_001171531.1| thioredoxin reductase 3 isoform 4 [Mus musculus].
Length = 501
Score = 60.5 bits (145), Expect = 2e-09
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Frame = +3
Query: 192 DQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPS 347
D D D+ +IG G GG A +AA LG K + ++ LGGTC+NVGCIP
Sbjct: 124 DSAHDYDLIIIGGGSGGLSCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPK 183
Query: 348 KALLNNSHYYHMAHGKDFASRGIEMS-EVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKV 524
K + + H +D G E + +V+ N E M E + + +L G ++ V
Sbjct: 184 KLMHQAALLGHAL--QDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGV 241
Query: 525 VRVNGYGK---------------ITGKNQVTATKADGSTEVINTKN-ILIATGSE 641
VN +G+ + GK +V A +G V N +L+A G +
Sbjct: 242 TYVNSFGEFVDLHKIKVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRD 296
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,085,934
Number of extensions: 677871
Number of successful extensions: 2100
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2079
Number of HSP's successfully gapped: 11
Length of query: 301
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 200
Effective length of database: 12,583,923
Effective search space: 2516784600
Effective search space used: 2516784600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003699
(904 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357560.1| PREDICTED: dihydrolipoyl dehydrogenase, mito... 543 e-155
Alignment gi|NP_999227.1| dihydrolipoyl dehydrogenase, mitochondrial prec... 541 e-154
Alignment gi|NP_999319.2| thioredoxin reductase 1, cytoplasmic [Sus scrof... 102 4e-22
Alignment gi|XP_003132464.2| PREDICTED: thioredoxin reductase 3 [Sus scro... 94 8e-20
Alignment gi|XP_003359547.1| PREDICTED: glutathione reductase, mitochondr... 94 1e-19
Alignment gi|XP_003359546.1| PREDICTED: glutathione reductase, mitochondr... 92 3e-19
Alignment gi|XP_003359545.1| PREDICTED: glutathione reductase, mitochondr... 92 3e-19
Alignment gi|XP_003359544.1| PREDICTED: glutathione reductase, mitochondr... 92 3e-19
Alignment gi|NP_001162173.1| thioredoxin reductase 2, mitochondrial [Sus ... 81 7e-16
Alignment gi|XP_003359549.1| PREDICTED: glutathione reductase, mitochondr... 60 2e-09
>ref|XP_003357560.1| PREDICTED: dihydrolipoyl dehydrogenase, mitochondrial-like [Sus
scrofa].
Length = 509
Score = 543 bits (1399), Expect = e-155
Identities = 273/273 (100%), Positives = 273/273 (100%)
Frame = +3
Query: 84 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 263
MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA
Sbjct: 1 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 264 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 443
AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL
Sbjct: 61 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120
Query: 444 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 623
EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL
Sbjct: 121 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 180
Query: 624 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 803
IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT
Sbjct: 181 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240
Query: 804 AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 902
AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK
Sbjct: 241 AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 273
>ref|NP_999227.1| dihydrolipoyl dehydrogenase, mitochondrial precursor [Sus scrofa].
Length = 509
Score = 541 bits (1393), Expect = e-154
Identities = 272/273 (99%), Positives = 272/273 (99%)
Frame = +3
Query: 84 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 263
MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA
Sbjct: 1 MQSWSRVYCTLAKRGHFNRIAHGLQGVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 264 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 443
AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL
Sbjct: 61 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120
Query: 444 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 623
EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL
Sbjct: 121 EKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNIL 180
Query: 624 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 803
IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT
Sbjct: 181 IATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240
Query: 804 AVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 902
AVE LGHVGGIGIDMEVSKNFQRILQKQGFKFK
Sbjct: 241 AVELLGHVGGIGIDMEVSKNFQRILQKQGFKFK 273
>ref|NP_999319.2| thioredoxin reductase 1, cytoplasmic [Sus scrofa].
Length = 499
Score = 102 bits (253), Expect = 4e-22
Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 9/241 (3%)
Frame = +3
Query: 204 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPSKALL 359
D D+ +IG G GG AA +AA+ + + ++ LGGTC+NVGCIP K L+
Sbjct: 12 DYDLIIIGGGSGGLAAAKEAARFNKRVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LM 70
Query: 360 NNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
+ + A +D + G + E ++ + E+M E N + +L G ++ KV N
Sbjct: 71 HQAALLGQAL-RDSRNYGWNVEETIKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYEN 129
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
YG+ G +++ AT G ++ + + LIATG E + GI D++ +SS SL
Sbjct: 130 AYGQFVGPHRIKATNNKGKEKIYSAEKFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPY 188
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFK 896
P K +V+GA + +E +G DVT + + + G D +++ +++ G K
Sbjct: 189 CPGKTLVVGASYVALECAGFLAGIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGVK 246
Query: 897 F 899
F
Sbjct: 247 F 247
>ref|XP_003132464.2| PREDICTED: thioredoxin reductase 3 [Sus scrofa].
Length = 669
Score = 94.4 bits (233), Expect = 8e-20
Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 9/245 (3%)
Frame = +3
Query: 192 DQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--------KNETLGGTCLNVGCIPS 347
D D D+ VIG G GG A +AA LG K + ++ + LGGTC+NVGCIP
Sbjct: 212 DPAYDYDLIVIGGGSGGLACAQEAAILGRKVLVLDFVVPSPQGTSWGLGGTCVNVGCIPK 271
Query: 348 KALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKV 524
K L++ + A D G E S+ V+ N M E N + +L G ++ V
Sbjct: 272 K-LMHQAALLGQAL-TDSRKFGWEYSQQVKHNWGTMTEAVQNHIGSLNWGYRLSLREKAV 329
Query: 525 VRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGAL 704
+N YG+ +++ AT G +IATG E + GI D++ ++S
Sbjct: 330 AYINSYGEFVEHHKIKATNGKGQETCYTAAKFVIATG-ERPRYLGIQGDKEYCITSDDLF 388
Query: 705 SLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQK 884
SL P +V+GA + +E LG DVT + + V G D E+++ +++
Sbjct: 389 SLPYCPGTTLVVGASYVALECAGFLAGLGLDVTVM--VRSVLLRGFDQEMAERVGSYMEQ 446
Query: 885 QGFKF 899
G +F
Sbjct: 447 HGVRF 451
>ref|XP_003359547.1| PREDICTED: glutathione reductase, mitochondrial-like isoform 4 [Sus
scrofa].
Length = 437
Score = 93.6 bits (231), Expect = 1e-19
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 5/217 (2%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAH 389
D VIG G GG +A +AA+LG + +E ++ LGGTC+NVGC+P K + N + + H
Sbjct: 63 DYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMH 121
Query: 390 GKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQV 569
D G + E + N + E++ V L + ++ + ++G+ T Q
Sbjct: 122 --DHVDYGFQSCESKFNWRVIKEKRDAYVSRLNTIYQNNLTKSHIEIIHGHAAFTSDPQP 179
Query: 570 TATKADGSTEVINTKNILIATGS--EVTP---FPGITIDEDTVVSSTGALSLKKVPEKMV 734
T + + + +ILIATG V P PG ++ ++S G L+++P + V
Sbjct: 180 T---VEVNGKKYTAPHILIATGGVPSVPPESQIPGASLG----ITSDGFFQLEELPSRSV 232
Query: 735 VIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGID 845
++GAG I VE+ + LG+ + + + H GI D
Sbjct: 233 IVGAGYIAVEIAGILSALGSKTSLM--IRHDKGIQTD 267
>ref|XP_003359546.1| PREDICTED: glutathione reductase, mitochondrial-like isoform 3 [Sus
scrofa].
Length = 466
Score = 92.4 bits (228), Expect = 3e-19
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 5/200 (2%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAH 389
D VIG G GG +A +AA+LG + +E ++ LGGTC+NVGC+P K + N + + H
Sbjct: 63 DYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMH 121
Query: 390 GKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQV 569
D G + E + N + E++ V L + ++ + ++G+ T Q
Sbjct: 122 --DHVDYGFQSCESKFNWRVIKEKRDAYVSRLNTIYQNNLTKSHIEIIHGHAAFTSDPQP 179
Query: 570 TATKADGSTEVINTKNILIATGS--EVTP---FPGITIDEDTVVSSTGALSLKKVPEKMV 734
T + + + +ILIATG V P PG ++ ++S G L+++P + V
Sbjct: 180 T---VEVNGKKYTAPHILIATGGVPSVPPESQIPGASLG----ITSDGFFQLEELPSRSV 232
Query: 735 VIGAGVIGVELGSVWQRLGA 794
++GAG I VE+ + LG+
Sbjct: 233 IVGAGYIAVEIAGILSALGS 252
>ref|XP_003359545.1| PREDICTED: glutathione reductase, mitochondrial-like isoform 2 [Sus
scrofa].
Length = 490
Score = 92.4 bits (228), Expect = 3e-19
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 5/200 (2%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAH 389
D VIG G GG +A +AA+LG + +E ++ LGGTC+NVGC+P K + N + + H
Sbjct: 63 DYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMH 121
Query: 390 GKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQV 569
D G + E + N + E++ V L + ++ + ++G+ T Q
Sbjct: 122 --DHVDYGFQSCESKFNWRVIKEKRDAYVSRLNTIYQNNLTKSHIEIIHGHAAFTSDPQP 179
Query: 570 TATKADGSTEVINTKNILIATGS--EVTP---FPGITIDEDTVVSSTGALSLKKVPEKMV 734
T + + + +ILIATG V P PG ++ ++S G L+++P + V
Sbjct: 180 T---VEVNGKKYTAPHILIATGGVPSVPPESQIPGASLG----ITSDGFFQLEELPSRSV 232
Query: 735 VIGAGVIGVELGSVWQRLGA 794
++GAG I VE+ + LG+
Sbjct: 233 IVGAGYIAVEIAGILSALGS 252
>ref|XP_003359544.1| PREDICTED: glutathione reductase, mitochondrial-like isoform 1 [Sus
scrofa].
Length = 519
Score = 92.4 bits (228), Expect = 3e-19
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 5/200 (2%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAH 389
D VIG G GG +A +AA+LG + +E ++ LGGTC+NVGC+P K + N + + H
Sbjct: 63 DYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMH 121
Query: 390 GKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQV 569
D G + E + N + E++ V L + ++ + ++G+ T Q
Sbjct: 122 --DHVDYGFQSCESKFNWRVIKEKRDAYVSRLNTIYQNNLTKSHIEIIHGHAAFTSDPQP 179
Query: 570 TATKADGSTEVINTKNILIATGS--EVTP---FPGITIDEDTVVSSTGALSLKKVPEKMV 734
T + + + +ILIATG V P PG ++ ++S G L+++P + V
Sbjct: 180 T---VEVNGKKYTAPHILIATGGVPSVPPESQIPGASLG----ITSDGFFQLEELPSRSV 232
Query: 735 VIGAGVIGVELGSVWQRLGA 794
++GAG I VE+ + LG+
Sbjct: 233 IVGAGYIAVEIAGILSALGS 252
>ref|NP_001162173.1| thioredoxin reductase 2, mitochondrial [Sus scrofa].
Length = 513
Score = 81.3 bits (199), Expect = 7e-16
Identities = 65/209 (31%), Positives = 93/209 (44%), Gaps = 11/209 (5%)
Frame = +3
Query: 210 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET--------LGGTCLNVGCIPSKALLNN 365
D+ VIG G GG A +AAQLG K ++ LGGTC+NVGCIP K +
Sbjct: 32 DLLVIGGGSGGLACAKEAAQLGKKVAVVDYVSPSPRGTRWGLGGTCVNVGCIPKKLM--- 88
Query: 366 SHYYHMAHG--KDFASRGIEMSEVRL-NLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVN 536
H + G +D G E+ + L + KM E N VK+L G + KV N
Sbjct: 89 -HQAALLGGVIRDAPHYGWEVVQPALHSWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFN 147
Query: 537 GYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKK 716
K+ V G +++ ++I+IATG I + ++S LK+
Sbjct: 148 FKASFVNKHTVCGVSKGGKEILLSAEHIVIATGGRPRYPAHIEGAVEYGITSDDIFWLKE 207
Query: 717 VPEKMVVIGAGVIGVELGSVWQRLGADVT 803
P K +V+GA + +E LG D T
Sbjct: 208 SPGKTLVVGASYVALECAGFLTGLGLDAT 236
>ref|XP_003359549.1| PREDICTED: glutathione reductase, mitochondrial [Sus scrofa].
Length = 524
Score = 59.7 bits (143), Expect = 2e-09
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
Frame = +3
Query: 324 LNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAH 503
+NVGC+P K + N + + H D G + E + N + E++ V L +
Sbjct: 105 VNVGCVPKKVMWNTAVHSEFMH--DHVDYGFQSCESKFNWRVIKEKRDAYVSRLNTIYQN 162
Query: 504 LFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGS--EVTP---FPGITI 668
++ + ++G+ T Q T + + + +ILIATG V P PG ++
Sbjct: 163 NLTKSHIEIIHGHAAFTSDPQPT---VEVNGKKYTAPHILIATGGVPSVPPESQIPGASL 219
Query: 669 DEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGA 794
++S G L+++P + V++GAG I VE+ + LG+
Sbjct: 220 G----ITSDGFFQLEELPSRSVIVGAGYIAVEIAGILSALGS 257
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,774,173
Number of extensions: 492966
Number of successful extensions: 1534
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1523
Number of HSP's successfully gapped: 10
Length of query: 301
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 203
Effective length of database: 8,904,026
Effective search space: 1807517278
Effective search space used: 1807517278
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003699
(904 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 291 3e-76
>Sscrofa_Chr09
|| Length = 153670197
Score = 291 bits (147), Expect = 3e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 519 aaggttgttcgtgtaaatggatatggaaagattactgggaaaaatcaggtcactgctaca 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118425322 aaggttgttcgtgtaaatggatatggaaagattactgggaaaaatcaggtcactgctaca 118425381
Query: 579 aaagctgatggcagcactgaagttatcaatacaaagaacattcttatagccacgggttca 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118425382 aaagctgatggcagcactgaagttatcaatacaaagaacattcttatagccacgggttca 118425441
Query: 639 gaagttactccttttcctggaattacg 665
|||||||||||||||||||||||||||
Sbjct: 118425442 gaagttactccttttcctggaattacg 118425468
Score = 266 bits (134), Expect = 2e-68
Identities = 137/138 (99%)
Strand = Plus / Plus
Query: 767 gggttcagtgtggcagagacttggtgcagatgtgacagcagttgagtttttgggtcatgt 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118433146 gggttcagtgtggcagagacttggtgcagatgtgacagcagttgagtttttgggtcatgt 118433205
Query: 827 tggtggaattgggattgatatggaggtatctaaaaactttcaacgcatccttcaaaaaca 886
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118433206 tggtggaattggaattgatatggaggtatctaaaaactttcaacgcatccttcaaaaaca 118433265
Query: 887 aggatttaaatttaaatt 904
||||||||||||||||||
Sbjct: 118433266 aggatttaaatttaaatt 118433283
Score = 212 bits (107), Expect = 2e-52
Identities = 116/119 (97%)
Strand = Plus / Plus
Query: 4 ggccgggaagaccctttcgagtcggcggaggtgcttagcggaggtgaaggagttggcgca 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118410856 ggccgggaagaccttggcgagtcggcggaggtgcttagcggaggtgaaggagttggcgca 118410915
Query: 64 aaggccaatacagcggcaagatgcaaagctggagtcgtgtatactgtaccttggccaag 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118410916 aaggccaatacagcggcaagatgcaaagctggagtcgtgtatactgtaccttggccaag 118410974
Score = 204 bits (103), Expect = 6e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 421 tgtctgaggttcgcttgaatttggagaagatgatggagcagaagagtaatgctgtaaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118424920 tgtctgaggttcgcttgaatttggagaagatgatggagcagaagagtaatgctgtaaaag 118424979
Query: 481 ccttaacgggtggaattgcccacttattcaaacagaataaggt 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118424980 ccttaacgggtggaattgcccacttattcaaacagaataaggt 118425022
Score = 165 bits (83), Expect = 5e-38
Identities = 97/104 (93%)
Strand = Plus / Plus
Query: 665 gattgatgaagatacagtagtgtcatctacaggtgctttatctttnnnnnnngttccgga 724
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 118426096 gattgatgaagatacagtagtgtcatctacaggtgctttatctttaaaaaaagttccgga 118426155
Query: 725 aaagatggttgtcattggtgcaggagtgataggtgtagaattgg 768
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118426156 aaagatggttgtcattggtgcaggagtgataggtgtagaattgg 118426199
Score = 161 bits (81), Expect = 8e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 121 agaggggccattttaatcgaatagctcatggtctgcaaggagtttctgcagtgccgctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118412455 agaggggccattttaatcgaatagctcatggtctgcaaggagtttctgcagtgccgctga 118412514
Query: 181 gaacttatgcagatcaaccaa 201
|||||||||||||||||||||
Sbjct: 118412515 gaacttatgcagatcaaccaa 118412535
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 202 ttgatgctgatgtaacagtgataggttctggtcctggaggatatgttgctgctattaaag 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118421987 ttgatgctgatgtaacagtgataggttctggtcctggaggatatgttgctgctattaaag 118422046
Query: 262 ctgcccagttaggtttcaag 281
||||||||||||||||||||
Sbjct: 118422047 ctgcccagttaggtttcaag 118422066
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 280 agacagtctgcattgagaaaaatgaaacacttggtggaacatgcttgaatgttggttgta 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118422540 agacagtctgcattgagaaaaatgaaacacttggtggaacatgcttgaatgttggttgta 118422599
Query: 340 ttccttctaagg 351
||||||||||||
Sbjct: 118422600 ttccttctaagg 118422611
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 349 aggctttattaaataactctcattattaccatatggcccatggaaaagattttgcatcta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118423383 aggctttattaaataactctcattattaccatatggcccatggaaaagattttgcatcta 118423442
Query: 409 ggggaattgaaa 420
||||||||||||
Sbjct: 118423443 ggggaattgaaa 118423454
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,960,873
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 9
Length of query: 904
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 883
Effective length of database: 2,808,413,156
Effective search space: 2479828816748
Effective search space used: 2479828816748
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)