Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003714
(979 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039377.1| cysteine and histidine-rich domain-containin... 469 e-132
Alignment gi|NP_001192661.1| integrin beta-1-binding protein 2 [Bos tauru... 225 4e-59
Alignment gi|XP_002700067.1| PREDICTED: integrin beta 1 binding protein (... 225 4e-59
>ref|NP_001039377.1| cysteine and histidine-rich domain-containing protein 1 [Bos
taurus].
Length = 332
Score = 469 bits (1207), Expect = e-132
Identities = 224/271 (82%), Positives = 229/271 (84%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSI GCT
Sbjct: 1 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 480
KGRHNS P+FQEHIIQAPKPVEAIKRPSPDEPMTNLEL
Sbjct: 61 KGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 120
Query: 481 KISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVYHS 660
KISASLKQALDKLKLS IK+GTSCKNGGCSKTYQGPQSLEEVCVYHS
Sbjct: 121 KISASLKQALDKLKLSSGNEENKKEEDSDEIKIGTSCKNGGCSKTYQGPQSLEEVCVYHS 180
Query: 661 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGE 840
GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKH WTKKDAGKKVVPCRHDWHQTGGE
Sbjct: 181 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHMWTKKDAGKKVVPCRHDWHQTGGE 240
Query: 841 VTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
VTISVYAKNSLPELSQVVANSTL++ +FE
Sbjct: 241 VTISVYAKNSLPELSQVVANSTLLNVHIVFE 271
Score = 80.9 bits (198), Expect = 2e-15
Identities = 30/67 (44%), Positives = 45/67 (67%)
Frame = +1
Query: 112 EEKMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIA 291
E K+ C N GC + + + ++ C YH GVP+FH+ +K WSCC+R+T+DF+ FL+
Sbjct: 150 EIKIGTSCKNGGCSKTYQGPQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQE 209
Query: 292 GCTKGRH 312
GCT G+H
Sbjct: 210 GCTTGKH 216
>ref|NP_001192661.1| integrin beta-1-binding protein 2 [Bos taurus].
Length = 348
Score = 225 bits (574), Expect = 4e-59
Identities = 115/274 (41%), Positives = 152/274 (55%), Gaps = 3/274 (1%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
M+LLC+N+GCGQ FDP+TN D+C +HPGVP+FHDALKGWSCC++RT DFS+FL+I GCT
Sbjct: 1 MSLLCHNKGCGQHFDPQTNLPDSCYHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIKRPSPDEPMTN--L 474
G H + P PK E ++R P + L
Sbjct: 61 VGPHCAEKLPEVPQPEGPGTSSSLQEQRPPNV------IPKSAETLRRERPKSELLPKLL 114
Query: 475 ELKISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVY 654
L IS +L+ AL++ +L I++G SC+N GC YQG +S C Y
Sbjct: 115 PLNISQALEMALEQKELD---QEPGAGVDSSLIRIGASCQNPGCDAVYQGLESDATPCTY 171
Query: 655 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKV-VPCRHDWHQT 831
H G P FHEG+K WSCC +T DF FLAQ GC G+H W GK+V CRHDWHQT
Sbjct: 172 HPGAPQFHEGVKSWSCCGIQTLDFGAFLAQPGCRVGRHDW-----GKQVPASCRHDWHQT 226
Query: 832 GGEVTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
V +++Y + LP + V A+ T + +F+
Sbjct: 227 DSLVVVTIYGQIPLPAFNWVKASQTELHVHIVFD 260
>ref|XP_002700067.1| PREDICTED: integrin beta 1 binding protein (melusin) 2 [Bos
taurus].
Length = 348
Score = 225 bits (574), Expect = 4e-59
Identities = 115/274 (41%), Positives = 152/274 (55%), Gaps = 3/274 (1%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
M+LLC+N+GCGQ FDP+TN D+C +HPGVP+FHDALKGWSCC++RT DFS+FL+I GCT
Sbjct: 1 MSLLCHNKGCGQHFDPQTNLPDSCYHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIKRPSPDEPMTN--L 474
G H + P PK E ++R P + L
Sbjct: 61 VGPHCAEKLPEVPQPEGPGTSSSLQEQRPPNV------IPKSAETLRRERPKSELLPKLL 114
Query: 475 ELKISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVY 654
L IS +L+ AL++ +L I++G SC+N GC YQG +S C Y
Sbjct: 115 PLNISQALEMALEQKELD---QEPGAGVDSSLIRIGASCQNPGCDAVYQGLESDATPCTY 171
Query: 655 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKV-VPCRHDWHQT 831
H G P FHEG+K WSCC +T DF FLAQ GC G+H W GK+V CRHDWHQT
Sbjct: 172 HPGAPQFHEGVKSWSCCGIQTLDFGAFLAQPGCRVGRHDW-----GKQVPASCRHDWHQT 226
Query: 832 GGEVTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
V +++Y + LP + V A+ T + +F+
Sbjct: 227 DSLVVVTIYGQIPLPAFNWVKASQTELHVHIVFD 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,993,131
Number of extensions: 861286
Number of successful extensions: 2614
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2601
Number of HSP's successfully gapped: 4
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003714
(979 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533979.2| PREDICTED: similar to cysteine and histidine-ri... 473 e-133
Alignment gi|XP_538074.2| PREDICTED: similar to Integrin beta-1 binding p... 225 6e-59
Alignment gi|XP_858419.1| PREDICTED: similar to Integrin beta-1 binding p... 75 7e-14
>ref|XP_533979.2| PREDICTED: similar to cysteine and histidine-rich domain
(CHORD)-containing, zinc-binding protein 1 [Canis
familiaris].
Length = 642
Score = 473 bits (1216), Expect = e-133
Identities = 233/307 (75%), Positives = 241/307 (78%)
Frame = +1
Query: 13 RQPPQPADRCLRSGSWKGSFWRFPVFGPDP*RWEEKMALLCYNRGCGQRFDPETNSDDAC 192
RQPPQPA RC + R E MALLCYNRGCGQRFDPETNSDDAC
Sbjct: 288 RQPPQPAARCPSRRVEQARERR-----------GEDMALLCYNRGCGQRFDPETNSDDAC 336
Query: 193 TYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKGRHNSXXXXXXXXXXXXXXXXXX 372
TYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKGRHNS
Sbjct: 337 TYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKGRHNSEKPPEPVKPEVKTTEKKE 396
Query: 373 XXXXXPRFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLKLSXXXXXXXX 552
P+FQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLKLS
Sbjct: 397 LSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLKLSSGNEESKK 456
Query: 553 XXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNT 732
IK+GTSCKNGGC+KTYQG QSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNT
Sbjct: 457 EEDSDEIKIGTSCKNGGCTKTYQGLQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNT 516
Query: 733 FLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGEVTISVYAKNSLPELSQVVANSTLV 912
FLAQEGCTTGKH WTKKDAGKKVVPCRHDWHQTGGEVTIS+YAKNSLPELSQVVANSTL+
Sbjct: 517 FLAQEGCTTGKHMWTKKDAGKKVVPCRHDWHQTGGEVTISIYAKNSLPELSQVVANSTLL 576
Query: 913 STLNIFE 933
+ +FE
Sbjct: 577 NVHIVFE 583
>ref|XP_538074.2| PREDICTED: similar to Integrin beta-1 binding protein 2 (Melusin)
isoform 1 [Canis familiaris].
Length = 347
Score = 225 bits (573), Expect = 6e-59
Identities = 114/273 (41%), Positives = 151/273 (55%), Gaps = 2/273 (0%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
M+LLC+N+GCGQ FDP N D+C +HPGVP+FHDALKGWSCC++RT DFS+FL+I GCT
Sbjct: 1 MSLLCHNKGCGQHFDPNANLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAI--KRPSPDEPMTNL 474
G H + Q+ + PK E + +RP + P L
Sbjct: 61 VGPHCAEKLPEAPQPEVPATSSSLQE------QKPLNTIPKSAETLHRERPKSELPPKLL 114
Query: 475 ELKISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVY 654
L IS +L+ AL++ +L I+ G+SC+N C YQGP+S C Y
Sbjct: 115 PLNISQALEMALEQKELDQEPGAGLDSSL---IRTGSSCQNPACDAVYQGPESDATPCTY 171
Query: 655 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTG 834
H G P FHEGMK WSCC +T DF FLAQ GC G+H W K + CRHDWHQT
Sbjct: 172 HPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGK----QLPASCRHDWHQTD 227
Query: 835 GEVTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
V +++Y + LP + V A+ T + +F+
Sbjct: 228 SLVVVTIYGQIPLPAFNWVKASQTELHVHIVFD 260
>ref|XP_858419.1| PREDICTED: similar to Integrin beta-1 binding protein 2 (Melusin)
isoform 2 [Canis familiaris].
Length = 106
Score = 75.5 bits (184), Expect = 7e-14
Identities = 35/83 (42%), Positives = 47/83 (56%)
Frame = +1
Query: 685 MKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGEVTISVYAK 864
MK WSCC +T DF FLAQ GC G+H W K + CRHDWHQT V +++Y +
Sbjct: 1 MKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGK----QLPASCRHDWHQTDSLVVVTIYGQ 56
Query: 865 NSLPELSQVVANSTLVSTLNIFE 933
LP + V A+ T + +F+
Sbjct: 57 IPLPAFNWVKASQTELHVHIVFD 79
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,518,907
Number of extensions: 887063
Number of successful extensions: 2665
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2657
Number of HSP's successfully gapped: 6
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003714
(979 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036256.2| cysteine and histidine-rich domain-containing p... 458 e-129
Alignment gi|NP_001137545.1| cysteine and histidine-rich domain-containin... 406 e-113
Alignment gi|NP_036410.1| integrin beta-1-binding protein 2 [Homo sapiens]. 230 2e-60
>ref|NP_036256.2| cysteine and histidine-rich domain-containing protein 1 isoform a
[Homo sapiens].
Length = 332
Score = 458 bits (1178), Expect = e-129
Identities = 219/271 (80%), Positives = 226/271 (83%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSI GCT
Sbjct: 1 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 480
KGRHNS P+FQEHIIQAPKPVEAIKRPSPDEPMTNLEL
Sbjct: 61 KGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 120
Query: 481 KISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVYHS 660
KISASLKQALDKLKLS IK+GTSCKNGGCSKTYQG +SLEEVCVYHS
Sbjct: 121 KISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVYHS 180
Query: 661 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGE 840
GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCT GKH WTKKDAGKKVVPCRHDWHQTGGE
Sbjct: 181 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHMWTKKDAGKKVVPCRHDWHQTGGE 240
Query: 841 VTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
VTISVYAKNSLPELS+V ANSTL++ +FE
Sbjct: 241 VTISVYAKNSLPELSRVEANSTLLNVHIVFE 271
Score = 82.4 bits (202), Expect = 6e-16
Identities = 31/67 (46%), Positives = 46/67 (68%)
Frame = +1
Query: 112 EEKMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIA 291
E K+ C N GC + + + ++ C YH GVP+FH+ +K WSCC+R+T+DF+ FL+
Sbjct: 150 EIKIGTSCKNGGCSKTYQGLESLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQE 209
Query: 292 GCTKGRH 312
GCTKG+H
Sbjct: 210 GCTKGKH 216
>ref|NP_001137545.1| cysteine and histidine-rich domain-containing protein 1 isoform b
[Homo sapiens].
Length = 313
Score = 406 bits (1044), Expect = e-113
Identities = 201/271 (74%), Positives = 208/271 (76%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKG CT
Sbjct: 1 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKG-------------------CT 41
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 480
KGRHNS P+FQEHIIQAPKPVEAIKRPSPDEPMTNLEL
Sbjct: 42 KGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 101
Query: 481 KISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVYHS 660
KISASLKQALDKLKLS IK+GTSCKNGGCSKTYQG +SLEEVCVYHS
Sbjct: 102 KISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVYHS 161
Query: 661 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGE 840
GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCT GKH WTKKDAGKKVVPCRHDWHQTGGE
Sbjct: 162 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHMWTKKDAGKKVVPCRHDWHQTGGE 221
Query: 841 VTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
VTISVYAKNSLPELS+V ANSTL++ +FE
Sbjct: 222 VTISVYAKNSLPELSRVEANSTLLNVHIVFE 252
Score = 82.4 bits (202), Expect = 6e-16
Identities = 31/67 (46%), Positives = 46/67 (68%)
Frame = +1
Query: 112 EEKMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIA 291
E K+ C N GC + + + ++ C YH GVP+FH+ +K WSCC+R+T+DF+ FL+
Sbjct: 131 EIKIGTSCKNGGCSKTYQGLESLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQE 190
Query: 292 GCTKGRH 312
GCTKG+H
Sbjct: 191 GCTKGKH 197
>ref|NP_036410.1| integrin beta-1-binding protein 2 [Homo sapiens].
Length = 347
Score = 230 bits (586), Expect = 2e-60
Identities = 117/273 (42%), Positives = 153/273 (56%), Gaps = 2/273 (0%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
M+LLC N+GCGQ FDP TN D+C +HPGVP+FHDALKGWSCC++RT DFS+FL+I GCT
Sbjct: 1 MSLLCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIKR--PSPDEPMTNL 474
G H + Q+ + PK E ++R P + P+ L
Sbjct: 61 MGPHCAEKLPEAPQPEGPATSSSLQE------QKPLNVIPKSAETLRRERPKSELPLKLL 114
Query: 475 ELKISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVY 654
L IS +L+ AL++ +L I+ G+SC+N GC YQGP+S C Y
Sbjct: 115 PLNISQALEMALEQKELDQEPGAGLDSL----IRTGSSCQNPGCDAVYQGPESDATPCTY 170
Query: 655 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTG 834
H G P FHEGMK WSCC +T DF FLAQ GC G+H W K + CRHDWHQT
Sbjct: 171 HPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGK----QLPASCRHDWHQTD 226
Query: 835 GEVTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
V ++VY + LP + V A+ T + +F+
Sbjct: 227 SLVVVTVYGQIPLPAFNWVKASQTELHVHIVFD 259
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,865,893
Number of extensions: 882943
Number of successful extensions: 2573
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2567
Number of HSP's successfully gapped: 8
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003714
(979 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080120.1| cysteine and histidine-rich domain-containing p... 459 e-129
Alignment gi|NP_038740.1| integrin beta-1-binding protein 2 [Mus musculus]. 230 1e-60
>ref|NP_080120.1| cysteine and histidine-rich domain-containing protein 1 [Mus
musculus].
Length = 331
Score = 459 bits (1181), Expect = e-129
Identities = 220/271 (81%), Positives = 225/271 (83%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
MALLCYNRGCGQRFDPE NSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSI GCT
Sbjct: 1 MALLCYNRGCGQRFDPEANSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 480
KGRHNS P+FQEHIIQAPKPVEAIKRPSPDEPMTNLEL
Sbjct: 61 KGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 120
Query: 481 KISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVYHS 660
KISASLKQALDKLKLS IK+GTSCKNGGCSKTYQG QSLEEVCVYHS
Sbjct: 121 KISASLKQALDKLKLSSGSEEDKKEEDSDEIKIGTSCKNGGCSKTYQGLQSLEEVCVYHS 180
Query: 661 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGE 840
GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCT GKH WTKKDAGKKVVPCRHDWHQTGGE
Sbjct: 181 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTRGKHVWTKKDAGKKVVPCRHDWHQTGGE 240
Query: 841 VTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
VTISVYAKNSLPELSQV ANSTL++ +FE
Sbjct: 241 VTISVYAKNSLPELSQVEANSTLLNVHIVFE 271
Score = 81.3 bits (199), Expect = 1e-15
Identities = 30/67 (44%), Positives = 46/67 (68%)
Frame = +1
Query: 112 EEKMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIA 291
E K+ C N GC + + + ++ C YH GVP+FH+ +K WSCC+R+T+DF+ FL+
Sbjct: 150 EIKIGTSCKNGGCSKTYQGLQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQE 209
Query: 292 GCTKGRH 312
GCT+G+H
Sbjct: 210 GCTRGKH 216
>ref|NP_038740.1| integrin beta-1-binding protein 2 [Mus musculus].
Length = 350
Score = 230 bits (586), Expect = 1e-60
Identities = 119/273 (43%), Positives = 151/273 (55%), Gaps = 2/273 (0%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
M+LLCYN+GCGQ FDP TN D+C YHPGVP+FHDALKGWSCC++RT DFS+FL+I GCT
Sbjct: 1 MSLLCYNKGCGQHFDPNTNLPDSCRYHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAI--KRPSPDEPMTNL 474
G H + Q+ + PK E + +RP + P L
Sbjct: 61 VGLHCAEKLPEVPPQPEGPATSSLQE------QKPLNTIPKSAETLFRERPKSEMPPKLL 114
Query: 475 ELKISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVY 654
L IS +L AL++ +L I G+SC+N GC YQGP+S C Y
Sbjct: 115 PLLISQALGVALEQKELDQEPGAGLDNSL---IWTGSSCQNPGCDAVYQGPESDATPCTY 171
Query: 655 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTG 834
H G P FHEGMK WSCC +T DF FLAQ GC G+H W K + CRHDWHQT
Sbjct: 172 HPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDWAK----QLPASCRHDWHQTD 227
Query: 835 GEVTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
V ++VY + LP + V A+ T + +F+
Sbjct: 228 SVVVLTVYGQIPLPAFNWVKASQTELHVHIVFD 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,699,708
Number of extensions: 744966
Number of successful extensions: 2152
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2146
Number of HSP's successfully gapped: 6
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003714
(979 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129799.2| PREDICTED: cysteine and histidine-rich domai... 485 e-137
Alignment gi|NP_001106917.1| cysteine and histidine-rich domain-containin... 473 e-134
Alignment gi|NP_001028181.1| integrin beta-1-binding protein 2 [Sus scrof... 231 4e-61
>ref|XP_003129799.2| PREDICTED: cysteine and histidine-rich domain-containing protein
1-like [Sus scrofa].
Length = 271
Score = 485 bits (1248), Expect = e-137
Identities = 234/271 (86%), Positives = 234/271 (86%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT
Sbjct: 1 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 480
KGRHNS PRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL
Sbjct: 61 KGRHNSEKPPEPVKPEVKTTEKKELSELKPRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 120
Query: 481 KISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVYHS 660
KISASLKQALDKLKLS IKVGTSCKNGGCSKTYQGPQSLEEVCVYHS
Sbjct: 121 KISASLKQALDKLKLSSGNEENKKEEDSDEIKVGTSCKNGGCSKTYQGPQSLEEVCVYHS 180
Query: 661 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGE 840
GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGE
Sbjct: 181 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGE 240
Query: 841 VTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
VTISVYAKNSLPELSQVVANSTLVSTLNIFE
Sbjct: 241 VTISVYAKNSLPELSQVVANSTLVSTLNIFE 271
Score = 80.9 bits (198), Expect = 1e-15
Identities = 30/67 (44%), Positives = 45/67 (67%)
Frame = +1
Query: 112 EEKMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIA 291
E K+ C N GC + + + ++ C YH GVP+FH+ +K WSCC+R+T+DF+ FL+
Sbjct: 150 EIKVGTSCKNGGCSKTYQGPQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQE 209
Query: 292 GCTKGRH 312
GCT G+H
Sbjct: 210 GCTTGKH 216
>ref|NP_001106917.1| cysteine and histidine-rich domain-containing protein 1 [Sus
scrofa].
Length = 332
Score = 473 bits (1216), Expect = e-134
Identities = 227/271 (83%), Positives = 230/271 (84%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT
Sbjct: 1 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 480
KGRHNS PRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL
Sbjct: 61 KGRHNSEKPPEPVKPEVKTTEKKELSELKPRFQEHIIQAPKPVEAIKRPSPDEPMTNLEL 120
Query: 481 KISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVYHS 660
KISASLKQALDKLKLS IKVGTSCKNGGCSKTYQGPQSLEEVCVYHS
Sbjct: 121 KISASLKQALDKLKLSSGNEENKKEEDSDEIKVGTSCKNGGCSKTYQGPQSLEEVCVYHS 180
Query: 661 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTGGE 840
GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKH WTKKDAGKKVVPCRHDWHQTGGE
Sbjct: 181 GVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHTWTKKDAGKKVVPCRHDWHQTGGE 240
Query: 841 VTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
VTISVYAKNSLPELSQVVANSTL++ +FE
Sbjct: 241 VTISVYAKNSLPELSQVVANSTLLNVHIVFE 271
Score = 80.9 bits (198), Expect = 1e-15
Identities = 30/67 (44%), Positives = 45/67 (67%)
Frame = +1
Query: 112 EEKMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIA 291
E K+ C N GC + + + ++ C YH GVP+FH+ +K WSCC+R+T+DF+ FL+
Sbjct: 150 EIKVGTSCKNGGCSKTYQGPQSLEEVCVYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQE 209
Query: 292 GCTKGRH 312
GCT G+H
Sbjct: 210 GCTTGKH 216
>ref|NP_001028181.1| integrin beta-1-binding protein 2 [Sus scrofa].
Length = 346
Score = 231 bits (590), Expect = 4e-61
Identities = 119/273 (43%), Positives = 151/273 (55%), Gaps = 2/273 (0%)
Frame = +1
Query: 121 MALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCT 300
M+LLC+N+GCGQ FDP+TN D+C +HPGVPVFHDALKGWSCC++RT DFS+FL+I GCT
Sbjct: 1 MSLLCHNKGCGQHFDPQTNLPDSCCHHPGVPVFHDALKGWSCCRKRTVDFSEFLNIKGCT 60
Query: 301 KGRHNSXXXXXXXXXXXXXXXXXXXXXXXPRFQEHIIQAPKPVEAIK--RPSPDEPMTNL 474
G H + P PK E ++ RP D P L
Sbjct: 61 VGPHCAEKLPEAPQPEGPATSSSLLEQKPPN------TIPKSAETLRRERPKSDLPPKLL 114
Query: 475 ELKISASLKQALDKLKLSXXXXXXXXXXXXXXIKVGTSCKNGGCSKTYQGPQSLEEVCVY 654
L IS +L+ AL++ +L I+ G SC+N GC YQG +S C Y
Sbjct: 115 PLNISQALEMALEQKELD---QEPGAGLDSSLIQTGASCQNPGCDAVYQGSESDATPCTY 171
Query: 655 HSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHAWTKKDAGKKVVPCRHDWHQTG 834
H G P FHEGMK WSCC +T DF FLAQ GC G+H W K K + CRHDWHQT
Sbjct: 172 HPGAPRFHEGMKSWSCCGIQTLDFGVFLAQPGCRVGRHDWGK----KLLASCRHDWHQTD 227
Query: 835 GEVTISVYAKNSLPELSQVVANSTLVSTLNIFE 933
V ++VY + LP + V A+ T + +F+
Sbjct: 228 SLVVVTVYGQIPLPAFNWVEASQTELHIHIVFD 260
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,882,807
Number of extensions: 552660
Number of successful extensions: 1640
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1630
Number of HSP's successfully gapped: 5
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003714
(979 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 365 3e-98
>Sscrofa_Chr09
|| Length = 153670197
Score = 365 bits (184), Expect = 3e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 1 gtttccggaagccggcagccgccccagcccgcagaccggtgtctgagatcggggagttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26044195 gtttccggaagccggcagccgccccagcccgcagaccggtgtctgagatcggggagttgg 26044254
Query: 61 aaaggcagcttctggcggttccccgtgtttgggcctgacccgtaacggtgggaagagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26044255 aaaggcagcttctggcggttccccgtgtttgggcctgacccgtaacggtgggaagagaaa 26044314
Query: 121 atggccctgctgtgctacaaccggggctgcggccagcgcttcgaccccgagacgaattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26044315 atggccctgctgtgctacaaccggggctgcggccagcgcttcgaccccgagacgaattcc 26044374
Query: 181 gacg 184
||||
Sbjct: 26044375 gacg 26044378
Score = 361 bits (182), Expect = 5e-97
Identities = 188/190 (98%)
Strand = Plus / Plus
Query: 790 gggaaaaaggtggttccatgtagacacgactggcatcagactgggggtgaagtcaccatt 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26060579 gggaaaaaggtggttccatgtagacacgactggcatcagactgggggtgaagtcaccatt 26060638
Query: 850 tcagtatatgctaaaaattcacttccagaacttagtcaggtagtggcaaatagtacgttg 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26060639 tcagtatatgctaaaaattcacttccagaacttagtcaggtagtggcaaatagtacgttg 26060698
Query: 910 gtaagtacactaaatatctttgagtgaaaattgcctttatacattattctttacattaat 969
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26060699 gtaagtacactaaatatctttgagtgaaaattgtctttatacattattctttacattaat 26060758
Query: 970 gtattgcaaa 979
||||| ||||
Sbjct: 26060759 gtattacaaa 26060768
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 292 ggctgtacgaaaggaaggcataacagtgagaagccaccagaaccagtcaaacctgaagtc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26051645 ggctgtacgaaaggaaggcataacagtgagaagccaccagaaccagtcaaacctgaagtc 26051704
Query: 352 aagactaccgagaagaaagaactatctgagttgaaacccagatttcaggaacacatcatt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26051705 aagactaccgagaagaaagaactatctgagttgaaacccagatttcaggaacacatcatt 26051764
Query: 412 caagcccctaaaccagtagaagcaataaaaaggccaag 449
||||||||||||||||||||||||||||||||||||||
Sbjct: 26051765 caagcccctaaaccagtagaagcaataaaaaggccaag 26051802
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 683 ggatgaaatactggagctgttgtagaagaaaaacttctgattttaatacattcttagccc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26058773 ggatgaaatactggagctgttgtagaagaaaaacttctgattttaatacattcttagccc 26058832
Query: 743 aggagggctgtacgacagggaaacacgcatggactaaaaaggatgctg 790
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26058833 aggagggctgtacgacagggaaacacgcatggactaaaaaggatgctg 26058880
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 448 agcccagatgaaccaatgacaaatttggaattaaaaatatctgcctccctaaaacaagca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26053626 agcccagatgaaccaatgacaaatttggaattaaaaatatctgcctccctaaaacaagca 26053685
Query: 508 ctcgataaacttaaactgtcatcagggaatgaagaaaataagaaag 553
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26053686 ctcgataaacttaaactgtcatcagggaatgaagaaaataagaaag 26053731
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 611 agacatatcagggtccacagagtctagaagaagtctgtgtatatcattctggagtaccta 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26057742 agacatatcagggtccacagagtctagaagaagtctgtgtatatcattctggagtaccta 26057801
Query: 671 ttttccatgaaggg 684
||||||||||||||
Sbjct: 26057802 ttttccatgaaggg 26057815
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 552 agaggaagacagtgatgaaattaaagttggaacctcatgtaaaaatggaggatgctcaaa 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26054077 agaggaagacagtgatgaaattaaagttggaacctcatgtaaaaatggaggatgctcaaa 26054136
Query: 612 g 612
|
Sbjct: 26054137 g 26054137
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 233 agggttggtcttgctgtaagagaagaacaactgatttttctgattttttaagcattgcag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26050073 agggttggtcttgctgtaagagaagaacaactgatttttctgattttttaagcattgcag 26050132
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 184 gatgcttgcacataccacccaggtgttccagtctttcatgatgcattaaagg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26047338 gatgcttgcacataccacccaggtgttccagtctttcatgatgcattaaagg 26047389
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,018,544
Number of extensions: 316
Number of successful extensions: 316
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 9
Length of query: 979
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 958
Effective length of database: 2,808,413,156
Effective search space: 2690459803448
Effective search space used: 2690459803448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)