Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003723
(1004 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030445.1| zinc finger and SCAN domain-containing prote... 357 9e-99
Alignment gi|XP_002684984.1| PREDICTED: zinc finger protein 390-like [Bos... 147 2e-37
Alignment gi|XP_001788970.1| PREDICTED: zinc finger protein 390-like [Bos... 145 6e-37
Alignment gi|NP_001070606.1| zinc finger and SCAN domain-containing prote... 133 7e-35
Alignment gi|NP_001068730.1| zinc finger protein 397 [Bos taurus]. 140 1e-33
Alignment gi|NP_001192408.1| zinc finger protein 24 [Bos taurus]. 139 5e-33
Alignment gi|XP_002697723.1| PREDICTED: zinc finger protein 24 [Bos tauru... 139 5e-33
Alignment gi|XP_002702938.1| PREDICTED: SCAN domain containing 3 [Bos tau... 133 2e-31
Alignment gi|NP_001180102.1| zinc finger protein with KRAB and SCAN domai... 131 1e-30
Alignment gi|XP_002698260.1| PREDICTED: zinc finger with KRAB and SCAN do... 131 1e-30
>ref|NP_001030445.1| zinc finger and SCAN domain-containing protein 21 [Bos taurus].
Length = 466
Score = 357 bits (916), Expect = 9e-99
Identities = 187/264 (70%), Positives = 207/264 (78%), Gaps = 5/264 (1%)
Frame = +3
Query: 180 MATVLGPRPPQEQGPVIXXXXXXXX-GKRL--EMFRQRFRQFGYHDTPGPREALSQLRVL 350
MATVLGPRPPQEQGPVI GKRL E+FRQRFRQFGYHDTPGPREALSQLRVL
Sbjct: 1 MATVLGPRPPQEQGPVIVKIEEEEEKGKRLPMEIFRQRFRQFGYHDTPGPREALSQLRVL 60
Query: 351 CCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTXXXXXXXXXXX 530
CCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVT
Sbjct: 61 CCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLERELDE 120
Query: 531 PAQQASPPPREQSQSWETMS-SGTTKESLSSPQPQALETGHQYESWGPLYIQETGEEQGF 707
PA Q SPPPREQ +SWE MS SG +ESLSSPQ +++ET H+YESWGPLYIQETGEE+ F
Sbjct: 121 PAPQVSPPPREQKRSWEKMSPSGMAEESLSSPQLESVETSHRYESWGPLYIQETGEEEKF 180
Query: 708 TPELRKIQDHKSNTQHEETTDKQEGSKESHAEEFRRDTVPMIIASKCEARVERQKSNLKR 887
TP LRK++D KS TQ+EE+TDK+ S+ESHAE FRRDT+PMII KCEAR+ERQ N ++
Sbjct: 181 TPALRKVRDRKSKTQNEESTDKEGSSEESHAEGFRRDTLPMIITDKCEARLERQWVNPEK 240
Query: 888 KEEQK-PLSXARFPQT*GVNTKPA 956
+ K PL + V TKPA
Sbjct: 241 ERGTKTPLQDKGSAKGREVVTKPA 264
Score = 54.3 bits (129), Expect = 2e-07
Identities = 30/44 (68%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Frame = +2
Query: 878 PEKERGTKTPLXGKVPPNVGSKY*T--CPGERRYICAECGKAFS 1003
PEKERGTKTPL K G + T PGERRYICAECGKAFS
Sbjct: 238 PEKERGTKTPLQDKGSAK-GREVVTKPAPGERRYICAECGKAFS 280
>ref|XP_002684984.1| PREDICTED: zinc finger protein 390-like [Bos taurus].
Length = 418
Score = 147 bits (372), Expect(2) = 2e-37
Identities = 93/212 (43%), Positives = 121/212 (57%), Gaps = 8/212 (3%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FR+RFRQF Y +TPGPREAL +L+ LC +WLRPE+HTKEQILELLVLEQFLTILP+EL
Sbjct: 74 EIFRRRFRQFCYQETPGPREALRRLQELCHQWLRPEMHTKEQILELLVLEQFLTILPEEL 133
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
QAWV+EH P S EEAV P +Q EQ + + ++ T + SS Q
Sbjct: 134 QAWVREHRPVSGEEAVIVLEDLERELDEPREQVPARDHEQKELVKEKAALGTAQESSSSQ 193
Query: 627 PQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKESHA-- 800
Q LE Q+ G IQE D+++ T + E K+E SKE +
Sbjct: 194 LQTLEERPQWNLRGVGPIQEI--------------DNETGTWNVELAPKRELSKEKKSLV 239
Query: 801 ---EEFRRDTVPM-IIASKC--EARVERQKSN 878
E+ DT+P+ C E R+ERQ+ +
Sbjct: 240 EAPEKLNGDTIPVPEYGETCDQEGRLERQRGS 271
Score = 27.3 bits (59), Expect(2) = 2e-37
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 950 TCPGERRYICAECGKAFS 1003
T GE+ Y C ECG+AFS
Sbjct: 299 THTGEKPYECDECGRAFS 316
>ref|XP_001788970.1| PREDICTED: zinc finger protein 390-like [Bos taurus].
Length = 432
Score = 145 bits (367), Expect(2) = 6e-37
Identities = 92/212 (43%), Positives = 121/212 (57%), Gaps = 8/212 (3%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FR+RFRQF Y +TPGPREAL +L+ LC +WLRPE+HTKEQILELLVLEQFLTILP+EL
Sbjct: 88 EIFRRRFRQFCYQETPGPREALRRLQELCHQWLRPEMHTKEQILELLVLEQFLTILPEEL 147
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
QAWV+EH P S EEAV P +Q EQ + + ++ T + SS Q
Sbjct: 148 QAWVREHRPVSGEEAVIVLEDLERELDEPREQVPARDHEQKELVKEKAALGTAQESSSNQ 207
Query: 627 PQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKESHA-- 800
Q LE Q+ G IQ+ D+++ T + E K+E SKE +
Sbjct: 208 LQTLEERPQWNLRGVGPIQKI--------------DNETGTWNVELAPKRELSKEKKSLV 253
Query: 801 ---EEFRRDTVPM-IIASKC--EARVERQKSN 878
E+ DT+P+ C E R+ERQ+ +
Sbjct: 254 EAPEKLNGDTIPVPEYGETCDQEGRLERQRGS 285
Score = 27.3 bits (59), Expect(2) = 6e-37
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 950 TCPGERRYICAECGKAFS 1003
T GE+ Y C ECG+AFS
Sbjct: 313 THTGEKPYECDECGRAFS 330
>ref|NP_001070606.1| zinc finger and SCAN domain-containing protein 12 [Bos taurus].
Length = 613
Score = 133 bits (335), Expect(2) = 7e-35
Identities = 92/230 (40%), Positives = 122/230 (53%), Gaps = 18/230 (7%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FR+ FRQF Y +T GPREALS+LR LC +WL+PE HTKEQILELLVLEQFLTILP+EL
Sbjct: 49 EVFRRYFRQFCYQETSGPREALSRLRELCHQWLKPETHTKEQILELLVLEQFLTILPEEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKE------ 608
QAWVQE PES EE VT P Q S EQ + E + T +E
Sbjct: 109 QAWVQEQHPESGEEVVTVLEDLERELDEPGYQVSVRSEEQ-ELQEIVPLRTEQEPRICLQ 167
Query: 609 -----------SLSSPQPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSN-TQ 752
L + Q Q +ETG++Y + L + + E + + K ++ S +
Sbjct: 168 SVQAQPKCESAELEAQQKQDIETGNEYRN---LKQEVSPEMKPYGNIASKFENEMSQPAR 224
Query: 753 HEETTDKQEGSKESHAEEFRRDTVPMIIASKCEARVERQKSNLKRKEEQK 902
+E+T + +E + ES +E R D P C+ NL E Q+
Sbjct: 225 YEKTYEPEEKTGES-SEYSREDKEP-----TCDENGVSLTENLDLSEHQR 268
Score = 32.7 bits (73), Expect(2) = 7e-35
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 953 CPGERRYICAECGKAFS 1003
CPGE+ Y+C CG+AFS
Sbjct: 270 CPGEKPYVCDVCGRAFS 286
>ref|NP_001068730.1| zinc finger protein 397 [Bos taurus].
Length = 534
Score = 140 bits (354), Expect = 1e-33
Identities = 76/184 (41%), Positives = 107/184 (58%), Gaps = 11/184 (5%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQ+FR+F Y +TPGPREAL +L+ LC +WLRPE+HTKEQILELLVLEQFL+ILP+EL
Sbjct: 47 ELFRQQFRKFCYQETPGPREALGRLQELCYQWLRPELHTKEQILELLVLEQFLSILPEEL 106
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WVQ+H P++ EEAVT P QQ P+ W+ ++ + + Q
Sbjct: 107 QIWVQQHSPKNGEEAVTLLEDLEREFDDPGQQVPATPQGPPMPWKDLTCLGAAQEFTHIQ 166
Query: 627 PQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSN-----------TQHEETTDK 773
Q L+ Q + W P ++G E + + I KS ++H+ + +
Sbjct: 167 RQPLK--KQLKPWEPCLPPKSGCENNESAIKKDISGEKSQRLSQEPSFGGFSEHKSSLEW 224
Query: 774 QEGS 785
Q+GS
Sbjct: 225 QQGS 228
>ref|NP_001192408.1| zinc finger protein 24 [Bos taurus].
Length = 368
Score = 139 bits (349), Expect = 5e-33
Identities = 72/133 (54%), Positives = 88/133 (66%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQRFRQFGY D+PGPREA+SQLR LC WLRPE HTKEQILEL+VLEQF+ ILP+EL
Sbjct: 49 EVFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WV+EH PE+ EEAVT P Q S R++ E + S + L S +
Sbjct: 109 QTWVREHHPENGEEAVTVLEDLESELDDPGQPVSLRRRKREVLVEEIVSQEEAQGLPSSE 168
Query: 627 PQALETGHQYESW 665
A+E ++ SW
Sbjct: 169 LDAVENQLKWASW 181
>ref|XP_002697723.1| PREDICTED: zinc finger protein 24 [Bos taurus].
Length = 368
Score = 139 bits (349), Expect = 5e-33
Identities = 72/133 (54%), Positives = 88/133 (66%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQRFRQFGY D+PGPREA+SQLR LC WLRPE HTKEQILEL+VLEQF+ ILP+EL
Sbjct: 49 EVFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WV+EH PE+ EEAVT P Q S R++ E + S + L S +
Sbjct: 109 QTWVREHHPENGEEAVTVLEDLESELDDPGQPVSLRRRKREVLVEEIVSQEEAQGLPSSE 168
Query: 627 PQALETGHQYESW 665
A+E ++ SW
Sbjct: 169 LDAVENQLKWASW 181
>ref|XP_002702938.1| PREDICTED: SCAN domain containing 3 [Bos taurus].
Length = 1326
Score = 133 bits (335), Expect = 2e-31
Identities = 78/143 (54%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+ RQRFRQF Y +TPGPREALSQLR LC WL PE HTKEQILELLVLEQ LTILP+EL
Sbjct: 49 ELSRQRFRQFCYQETPGPREALSQLRELCRLWLSPETHTKEQILELLVLEQLLTILPEEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMS-SGTTKESLSSP 623
QAWV+EH PES EE VT P QQ EQ+ E + T KESL +
Sbjct: 109 QAWVREHHPESGEEVVTVLEDLERELDEPRQQVPQGTYEQAVPMEEKTLLDTAKESLGT- 167
Query: 624 QPQALETGHQYESWGPLYIQETG 692
Q++E + ES +Q+ G
Sbjct: 168 HLQSIEDRMECESPESHLLQDNG 190
>ref|NP_001180102.1| zinc finger protein with KRAB and SCAN domains 5 [Bos taurus].
Length = 832
Score = 131 bits (329), Expect = 1e-30
Identities = 61/76 (80%), Positives = 66/76 (86%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E F QRF+ F YH+ GPREALSQLRVLCCEWLRPE+HTKEQILELLVLEQFLTILP+E
Sbjct: 47 ETFYQRFKHFQYHEASGPREALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEEF 106
Query: 447 QAWVQEHCPESAEEAV 494
Q WV+EH PES EEAV
Sbjct: 107 QTWVREHHPESGEEAV 122
>ref|XP_002698260.1| PREDICTED: zinc finger with KRAB and SCAN domains 5 [Bos taurus].
Length = 832
Score = 131 bits (329), Expect = 1e-30
Identities = 61/76 (80%), Positives = 66/76 (86%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E F QRF+ F YH+ GPREALSQLRVLCCEWLRPE+HTKEQILELLVLEQFLTILP+E
Sbjct: 47 ETFYQRFKHFQYHEASGPREALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEEF 106
Query: 447 QAWVQEHCPESAEEAV 494
Q WV+EH PES EEAV
Sbjct: 107 QTWVREHHPESGEEAV 122
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,069,549
Number of extensions: 979770
Number of successful extensions: 9440
Number of sequences better than 1.0e-05: 85
Number of HSP's gapped: 9421
Number of HSP's successfully gapped: 90
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003723
(1004 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 ho... 336 e-101
Alignment gi|XP_537285.1| PREDICTED: similar to Zinc finger protein 24 (Z... 137 1e-32
Alignment gi|XP_546974.2| PREDICTED: similar to zinc finger protein 95 ho... 135 8e-32
Alignment gi|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (... 134 1e-31
Alignment gi|XP_545451.2| PREDICTED: similar to zinc finger protein 452 [... 134 2e-31
Alignment gi|XP_545440.2| PREDICTED: similar to Zinc finger protein Kr18 ... 127 1e-29
Alignment gi|XP_854334.1| PREDICTED: similar to zinc finger protein 435 [... 126 4e-29
Alignment gi|XP_535446.1| PREDICTED: similar to zinc finger protein 31 [C... 126 4e-29
Alignment gi|XP_850236.1| PREDICTED: similar to zinc finger protein ZFP i... 125 5e-29
Alignment gi|XP_860330.1| PREDICTED: similar to zinc finger protein 36 is... 124 1e-28
>ref|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 homolog (Zfp-38)
(NY-REN-21 antigen) (Zinc finger and SCAN domain
containing protein 21) [Canis familiaris].
Length = 598
Score = 336 bits (861), Expect(2) = e-101
Identities = 176/277 (63%), Positives = 201/277 (72%), Gaps = 3/277 (1%)
Frame = +3
Query: 81 RTRNPEEPILLAHRAPYLVTLFWST*MMTKVLGMATVLGPRPPQEQGPVIXXXXXXXXGK 260
+ + P+ + A ++P +MTKVL MA V GPRPPQ +GPV+ GK
Sbjct: 103 KNQKPKGTSIPAPQSPIFSEAISGICVMTKVLSMAAVRGPRPPQVRGPVVVKDEEEE-GK 161
Query: 261 ---RLEMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTI 431
LE+FRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTI
Sbjct: 162 CLPSLEVFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTI 221
Query: 432 LPQELQAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKES 611
LPQELQAWVQEHCPESAEEAVT P QQ S PP EQ Q WE SS T +
Sbjct: 222 LPQELQAWVQEHCPESAEEAVTLLEDLEQELDEPGQQVSSPPSEQQQMWEKKSSSGTVKF 281
Query: 612 LSSPQPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKE 791
SS QPQ++ T H+ E W PLYIQETGEEQ FTPELRK QD KSNTQ+EE+TDKQ+ S+E
Sbjct: 282 PSSTQPQSVVTSHKCEGWEPLYIQETGEEQNFTPELRKSQDRKSNTQNEESTDKQKSSEE 341
Query: 792 SHAEEFRRDTVPMIIASKCEARVERQKSNLKRKEEQK 902
+EF+RD +PMIIASKCEAR+ERQ NL+++ K
Sbjct: 342 --CQEFKRDVIPMIIASKCEARLERQWVNLEKERGTK 376
Score = 50.8 bits (120), Expect(2) = e-101
Identities = 30/48 (62%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Frame = +2
Query: 881 EKERGTKTPLXGKVPPNVGSKY*T-------CPGERRYICAECGKAFS 1003
EKERGTKTPL K GSK PGERRYICAECGKAFS
Sbjct: 370 EKERGTKTPLLDK-----GSKKGRELIPAKPAPGERRYICAECGKAFS 412
>ref|XP_537285.1| PREDICTED: similar to Zinc finger protein 24 (Zinc finger protein
191) (Zinc finger protein KOX17) (Retinoic acid
suppression protein A) (RSG-A) (Zinc finger and SCAN
domain containing protein 3) [Canis familiaris].
Length = 368
Score = 137 bits (346), Expect = 1e-32
Identities = 71/133 (53%), Positives = 88/133 (66%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQRFRQFGY D+PGPREA+SQLR LC WLRPE HTKEQILEL+VLEQF+ ILP+EL
Sbjct: 49 EVFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WV+EH PE+ EEAVT P Q S R++ E + S + L + +
Sbjct: 109 QTWVREHHPENGEEAVTVLEDLESELDDPGQPVSLRRRKREVLVEEIVSQEEAQGLPNSE 168
Query: 627 PQALETGHQYESW 665
A+E ++ SW
Sbjct: 169 LDAVENQLKWASW 181
>ref|XP_546974.2| PREDICTED: similar to zinc finger protein 95 homolog [Canis
familiaris].
Length = 835
Score = 135 bits (339), Expect = 8e-32
Identities = 74/127 (58%), Positives = 83/127 (65%), Gaps = 4/127 (3%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E F QRFR F YH+ GPREALSQLRVLCCEWLRPE+HTKEQILELLVLEQFLTILP+E
Sbjct: 47 ETFYQRFRHFQYHEASGPREALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEEF 106
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLS--- 617
Q WV+EH PES EEAV QQ P Q + + G +ESLS
Sbjct: 107 QTWVREHHPESGEEAVAVVENIQRELEERRQQIVVCPEVLPQ--KMVPPGVVQESLSHQL 164
Query: 618 -SPQPQA 635
S +PQ+
Sbjct: 165 LSVEPQS 171
>ref|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (Zinc finger and SCAN
domain containing protein 15) [Canis familiaris].
Length = 491
Score = 134 bits (338), Expect = 1e-31
Identities = 71/118 (60%), Positives = 84/118 (71%)
Frame = +3
Query: 264 LEMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQE 443
LE FRQRFRQFGY D+ GPREALSQLR LC +WLRPE++TKEQILELLVLEQFL ILP+E
Sbjct: 44 LETFRQRFRQFGYSDSAGPREALSQLRELCHQWLRPEVNTKEQILELLVLEQFLAILPEE 103
Query: 444 LQAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLS 617
LQAW++E+ PE+ EEAVT P QQ + Q W+ M+S +SLS
Sbjct: 104 LQAWLREYQPENGEEAVTMLEELEKELDEPRQQDT--AHGQGMIWKEMTSIGALKSLS 159
>ref|XP_545451.2| PREDICTED: similar to zinc finger protein 452 [Canis familiaris].
Length = 1327
Score = 134 bits (336), Expect = 2e-31
Identities = 93/233 (39%), Positives = 118/233 (50%), Gaps = 11/233 (4%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+ RQRFR F Y +TPGPREAL++LR LC WLRPE H+KEQILELLVLEQFLTILP+EL
Sbjct: 49 ELRRQRFRHFCYQETPGPREALTRLRELCRRWLRPESHSKEQILELLVLEQFLTILPEEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSS-GTTKESLSSP 623
QAWV+E PES +E V P QQ S S E M+ T KESL +
Sbjct: 109 QAWVREQHPESGDEVVAVLEDLERELDEPRQQVSQSTHRPETSVEEMTPLDTAKESLGT- 167
Query: 624 QPQALETGHQYESWGP---------LYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQ 776
Q Q++E + ES P L++ + G + H+ + E +K
Sbjct: 168 QFQSVEDSMECESPEPHPLQGNGSFLWLSMMSQSMGGDDNPNTLDTHEPEVKPENMREKF 227
Query: 777 EGSKESHAEEFRRDTVPMIIASKCEARVERQKSNLK-RKEEQKPLSXARFPQT 932
S E +T A C+ E +++ K RKE ARF T
Sbjct: 228 FRSLAVLLENKSNNTKIFSKAKYCQLIREVKEAKAKARKESVDYRRLARFDVT 280
>ref|XP_545440.2| PREDICTED: similar to Zinc finger protein Kr18 (HKr18) [Canis
familiaris].
Length = 772
Score = 127 bits (320), Expect = 1e-29
Identities = 87/204 (42%), Positives = 109/204 (53%), Gaps = 19/204 (9%)
Frame = +3
Query: 261 RLEMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQ 440
R E+FRQ FR+ Y D PGPREALSQL LC +WLRPE HTKEQIL+LLVLEQFL+ILP+
Sbjct: 36 RRELFRQHFRKLCYQDAPGPREALSQLWELCRQWLRPEYHTKEQILDLLVLEQFLSILPR 95
Query: 441 ELQAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSS-GTTKESLS 617
+LQAWVQ H P + EEAVT P +Q Q + ++ G ESL+
Sbjct: 96 DLQAWVQAHHPRTGEEAVTVLEDLERELEEPRKQLPATSERQDTLLDKLTPLGRPHESLT 155
Query: 618 SPQPQALETGHQYESWGPLYIQETGEEQGFTPE--------------LRKIQD--HKSNT 749
+ Q + +T + ES P Q G + E L KI D +K
Sbjct: 156 T-QLRPKKTQQEQESGEP---QRNGNKTRIKDEALSQKEHRPKDTEFLGKINDRLNKDIL 211
Query: 750 QHEETTD--KQEGSKESHAEEFRR 815
QH E+ D + EG E +E RR
Sbjct: 212 QHPESKDATESEGRLEWQQKERRR 235
>ref|XP_854334.1| PREDICTED: similar to zinc finger protein 435 [Canis familiaris].
Length = 133
Score = 126 bits (316), Expect = 4e-29
Identities = 61/92 (66%), Positives = 70/92 (76%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+F QRF+QF Y +TPGPREALSQL + CC+WLRPEIHTKEQ+L+LLVLEQFLTILP+EL
Sbjct: 35 ELFHQRFQQFCYKETPGPREALSQLWMFCCKWLRPEIHTKEQMLDLLVLEQFLTILPKEL 94
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQ 542
QAWV E PES EEAV P Q+
Sbjct: 95 QAWVWEQHPESGEEAVAVLEDLEKELDEPGQK 126
>ref|XP_535446.1| PREDICTED: similar to zinc finger protein 31 [Canis familiaris].
Length = 852
Score = 126 bits (316), Expect = 4e-29
Identities = 65/129 (50%), Positives = 79/129 (61%)
Frame = +3
Query: 255 GKRLEMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTIL 434
G E FRQRFR+F Y + GPREA SQL LCC WLRPE+ TKEQI+ELLVLEQFLTIL
Sbjct: 10 GTNPETFRQRFRRFHYQEVAGPREAFSQLWELCCRWLRPEVRTKEQIVELLVLEQFLTIL 69
Query: 435 PQELQAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESL 614
P E+Q WVQE CPES EEAV P + + + Q E M+ + L
Sbjct: 70 PGEIQNWVQEQCPESGEEAVALVEDLEREPGRPGRSVTVSVKGQEVRLEKMTPLKSSREL 129
Query: 615 SSPQPQALE 641
S + +++E
Sbjct: 130 LSVRQESVE 138
>ref|XP_850236.1| PREDICTED: similar to zinc finger protein ZFP isoform 1 [Canis
familiaris].
Length = 702
Score = 125 bits (315), Expect = 5e-29
Identities = 64/116 (55%), Positives = 78/116 (67%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FR FRQ YH+ GP+EALS+LR LC WL PE+HTKEQILELLVLEQFL+ILP EL
Sbjct: 51 EIFRLHFRQLCYHEMSGPQEALSRLRELCRWWLMPEVHTKEQILELLVLEQFLSILPGEL 110
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESL 614
+ WVQ H PES EEAV P + ++P ++ ET + GTT+ESL
Sbjct: 111 RTWVQLHHPESGEEAVAVVEDFQRHLSGPREDSAPAQEQEMHLEETTALGTTEESL 166
>ref|XP_860330.1| PREDICTED: similar to zinc finger protein 36 isoform 2 isoform 3
[Canis familiaris].
Length = 490
Score = 124 bits (310), Expect(2) = 1e-28
Identities = 87/221 (39%), Positives = 114/221 (51%), Gaps = 21/221 (9%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQRFR F Y +T GPREALS+L+ LC +WLRPEI+TKEQILELLVLEQFL+ILP+EL
Sbjct: 53 EIFRQRFRHFCYQNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKEL 112
Query: 447 QAWVQEHCPESAEEAVT---XXXXXXXXXXXPAQQASP----------PPREQSQSWETM 587
Q W+QE+ P+S EEAVT P Q P P ++S S++
Sbjct: 113 QVWLQEYRPDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLH 172
Query: 588 SSGTTKE-SLSSPQPQALET------GHQYESWGPLYIQETGEEQG-FTPELRKIQDHKS 743
T SS +P+ L++ ES I E +G T +K K
Sbjct: 173 HEATQSHFKHSSRKPRLLQSRGCENRNENEESTSKAEIAEDSAPRGEMTGRFQKDFGEK- 231
Query: 744 NTQHEETTDKQEGSKESHAEEFRRDTVPMIIASKCEARVER 866
Q T ++Q+ + E +RD+ P K A ER
Sbjct: 232 REQQSRTVERQQRNPEEKTGREKRDSGPATTKEKKPATGER 272
Score = 21.6 bits (44), Expect(2) = 1e-28
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 959 GERRYICAECGKAFS 1003
G + + C ECGK F+
Sbjct: 300 GAKSHRCDECGKCFT 314
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,626,781
Number of extensions: 1006426
Number of successful extensions: 8982
Number of sequences better than 1.0e-05: 61
Number of HSP's gapped: 8963
Number of HSP's successfully gapped: 63
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003723
(1004 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666019.1| zinc finger and SCAN domain-containing protein ... 318 8e-94
Alignment gi|NP_443155.1| SCAN domain-containing protein 3 [Homo sapiens]. 146 3e-35
Alignment gi|NP_001128650.1| zinc finger protein 397 isoform 1 [Homo sapi... 143 2e-34
Alignment gi|NP_115723.1| zinc finger protein 397 isoform 2 [Homo sapiens]. 142 5e-34
Alignment gi|NP_008896.2| zinc finger protein 24 [Homo sapiens]. 139 4e-33
Alignment gi|NP_001159484.1| zinc finger and SCAN domain-containing prote... 139 5e-33
Alignment gi|NP_001106205.1| zinc finger and SCAN domain-containing prote... 139 5e-33
Alignment gi|NP_001230170.1| zinc finger protein 323 isoform 1 [Homo sapi... 138 9e-33
Alignment gi|NP_112161.3| zinc finger protein 323 isoform 1 [Homo sapiens]. 138 9e-33
Alignment gi|NP_001128688.1| zinc finger protein 323 isoform 1 [Homo sapi... 138 9e-33
>ref|NP_666019.1| zinc finger and SCAN domain-containing protein 21 [Homo sapiens].
Length = 473
Score = 318 bits (816), Expect(2) = 8e-94
Identities = 170/255 (66%), Positives = 192/255 (75%), Gaps = 6/255 (2%)
Frame = +3
Query: 159 MMTKVLGMATVLGPRPPQEQ-GPV-IXXXXXXXXGK---RLEMFRQRFRQFGYHDTPGPR 323
MMTKVLGMA VLGPRPPQEQ GP+ + GK LEMFRQRFRQFGYHDTPGPR
Sbjct: 1 MMTKVLGMAPVLGPRPPQEQVGPLMVKVEEKEEKGKYLPSLEMFRQRFRQFGYHDTPGPR 60
Query: 324 EALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTXX 503
EALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVT
Sbjct: 61 EALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLL 120
Query: 504 XXXXXXXXXPAQQASPPPREQSQSWETM-SSGTTKESLSSPQPQALETGHQYESWGPLYI 680
P Q S PP EQ WE + SSGT KES SS QPQ LET H+YESWGPLYI
Sbjct: 121 EDLERELDEPGHQVSTPPNEQKPVWEKISSSGTAKESPSSMQPQPLETSHKYESWGPLYI 180
Query: 681 QETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKESHAEEFRRDTVPMIIASKCEARV 860
QE+GEEQ F + RK++D + +TQHEE+ D+Q+GS+ AE + D + +IIA+K EA +
Sbjct: 181 QESGEEQEFAQDPRKVRDCRLSTQHEESADEQKGSE---AEGLKGDIISVIIANKPEASL 237
Query: 861 ERQKSNLKRKEEQKP 905
ERQ NL+ ++ KP
Sbjct: 238 ERQCVNLENEKGTKP 252
Score = 44.7 bits (104), Expect(2) = 8e-94
Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Frame = +2
Query: 881 EKERGTKTPLXG----KVPPNVGSKY*TCPGERRYICAECGKAFS 1003
E E+GTK PL K +V +K PGERRYICAECGKAFS
Sbjct: 245 ENEKGTKPPLQEAGSKKGRESVPTK--PTPGERRYICAECGKAFS 287
>ref|NP_443155.1| SCAN domain-containing protein 3 [Homo sapiens].
Length = 1325
Score = 146 bits (369), Expect = 3e-35
Identities = 95/219 (43%), Positives = 121/219 (55%), Gaps = 9/219 (4%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+ RQRFRQF Y +TPGPREALSQLR LC +WL PEIHTKEQILELLVLEQFLTILP+EL
Sbjct: 49 ELSRQRFRQFCYQETPGPREALSQLRELCRQWLNPEIHTKEQILELLVLEQFLTILPEEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETM-SSGTTKESLSSP 623
Q+WV+EH PES EE VT P QQ S Q S E M + KESL +
Sbjct: 109 QSWVREHNPESGEEVVTLLEDLERELDEPRQQVSQGTYGQEVSMEEMIPLDSAKESLGT- 167
Query: 624 QPQALETGHQYESWGPLYIQETGEEQGFT--------PELRKIQDHKSNTQHEETTDKQE 779
Q Q++E + ES P +Q+ G F+ L + +++ + E +K
Sbjct: 168 QLQSMEDRMECESPEPHPLQDNGSFLWFSMMSQSMGGDNLSSLDTNEAEIEPENMREKFF 227
Query: 780 GSKESHAEEFRRDTVPMIIASKCEARVERQKSNLKRKEE 896
S E +T A C+ E +++ K K+E
Sbjct: 228 RSLARLLENKSNNTKIFSKAKYCQLIKEVKEAKAKAKKE 266
>ref|NP_001128650.1| zinc finger protein 397 isoform 1 [Homo sapiens].
Length = 534
Score = 143 bits (361), Expect = 2e-34
Identities = 78/177 (44%), Positives = 105/177 (59%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQ+FR+F Y +TPGPREALS+L+ LC +WL PE+HTKEQILELLVLEQFL+ILP+EL
Sbjct: 47 ELFRQQFRKFCYQETPGPREALSRLQELCYQWLMPELHTKEQILELLVLEQFLSILPEEL 106
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WVQ+H PES EEAVT P QQ P+ + W+ ++ + +
Sbjct: 107 QIWVQQHNPESGEEAVTLLEDLEREFDDPGQQVPASPQGPAVPWKDLTCLRASQESTDIH 166
Query: 627 PQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKESH 797
Q L+T Q +SW P ++ E T I + KS +E + + ES+
Sbjct: 167 LQPLKT--QLKSWKPCLSPKSDCENSETATKEGISEEKSQGLPQEPSFRGISEHESN 221
>ref|NP_115723.1| zinc finger protein 397 isoform 2 [Homo sapiens].
Length = 275
Score = 142 bits (358), Expect = 5e-34
Identities = 76/165 (46%), Positives = 100/165 (60%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQ+FR+F Y +TPGPREALS+L+ LC +WL PE+HTKEQILELLVLEQFL+ILP+EL
Sbjct: 47 ELFRQQFRKFCYQETPGPREALSRLQELCYQWLMPELHTKEQILELLVLEQFLSILPEEL 106
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WVQ+H PES EEAVT P QQ P+ + W+ ++ + +
Sbjct: 107 QIWVQQHNPESGEEAVTLLEDLEREFDDPGQQVPASPQGPAVPWKDLTCLRASQESTDIH 166
Query: 627 PQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEE 761
Q L+T Q +SW P ++ E T I + KS +E
Sbjct: 167 LQPLKT--QLKSWKPCLSPKSDCENSETATKEGISEEKSQGLPQE 209
>ref|NP_008896.2| zinc finger protein 24 [Homo sapiens].
Length = 368
Score = 139 bits (350), Expect = 4e-33
Identities = 72/133 (54%), Positives = 88/133 (66%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQRFRQFGY D+PGPREA+SQLR LC WLRPE HTKEQILEL+VLEQF+ ILP+EL
Sbjct: 49 EIFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WV++H PE+ EEAVT P Q S R++ E M S + L S +
Sbjct: 109 QTWVRDHHPENGEEAVTVLEDLESELDDPGQPVSLRRRKREVLVEDMVSQEEAQGLPSSE 168
Query: 627 PQALETGHQYESW 665
A+E ++ SW
Sbjct: 169 LDAVENQLKWASW 181
>ref|NP_001159484.1| zinc finger and SCAN domain-containing protein 30 [Homo sapiens].
Length = 494
Score = 139 bits (349), Expect = 5e-33
Identities = 75/141 (53%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQ+FRQF Y D+ GPREALS+LR LCC+WLRPE+H+KEQILELL+LEQFL ILP+EL
Sbjct: 45 EVFRQKFRQFSYSDSTGPREALSRLRELCCQWLRPEVHSKEQILELLMLEQFLAILPEEL 104
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
QAW++EH PE+ EEAVT P QQ + Q W+ M+S +SLS
Sbjct: 105 QAWLREHRPENGEEAVTMLEELEKELEEPRQQDT--THGQEMFWQEMTSTGALKSLSLNS 162
Query: 627 P-QALETGHQYESWGPLYIQE 686
P Q LE + E+ QE
Sbjct: 163 PVQPLENQCKTETQESQAFQE 183
>ref|NP_001106205.1| zinc finger and SCAN domain-containing protein 30 [Homo sapiens].
Length = 494
Score = 139 bits (349), Expect = 5e-33
Identities = 75/141 (53%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQ+FRQF Y D+ GPREALS+LR LCC+WLRPE+H+KEQILELL+LEQFL ILP+EL
Sbjct: 45 EVFRQKFRQFSYSDSTGPREALSRLRELCCQWLRPEVHSKEQILELLMLEQFLAILPEEL 104
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
QAW++EH PE+ EEAVT P QQ + Q W+ M+S +SLS
Sbjct: 105 QAWLREHRPENGEEAVTMLEELEKELEEPRQQDT--THGQEMFWQEMTSTGALKSLSLNS 162
Query: 627 P-QALETGHQYESWGPLYIQE 686
P Q LE + E+ QE
Sbjct: 163 PVQPLENQCKTETQESQAFQE 183
>ref|NP_001230170.1| zinc finger protein 323 isoform 1 [Homo sapiens].
Length = 406
Score = 138 bits (347), Expect = 9e-33
Identities = 87/178 (48%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E RQ FRQF Y +TPGPREALS+LR LC +WLRPEIHTKEQILELLVLEQFLTILP+EL
Sbjct: 36 EASRQLFRQFCYQETPGPREALSRLRELCHQWLRPEIHTKEQILELLVLEQFLTILPEEL 95
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQS---WETMSSGTTKESLS 617
QAWV+EH PES EEAV P QA P E S E + K+ +
Sbjct: 96 QAWVREHHPESGEEAVAVVEDLEQELSEPGNQA--PDHEHGHSEVLLEDVEHLKVKQEPT 153
Query: 618 SPQPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKE 791
Q Q + T +YES+ QE QD +S +++E KQE KE
Sbjct: 154 DIQLQPMVTQLRYESFCLHQFQE--------------QDGESIPENQELASKQEILKE 197
>ref|NP_112161.3| zinc finger protein 323 isoform 1 [Homo sapiens].
Length = 406
Score = 138 bits (347), Expect = 9e-33
Identities = 87/178 (48%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E RQ FRQF Y +TPGPREALS+LR LC +WLRPEIHTKEQILELLVLEQFLTILP+EL
Sbjct: 36 EASRQLFRQFCYQETPGPREALSRLRELCHQWLRPEIHTKEQILELLVLEQFLTILPEEL 95
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQS---WETMSSGTTKESLS 617
QAWV+EH PES EEAV P QA P E S E + K+ +
Sbjct: 96 QAWVREHHPESGEEAVAVVEDLEQELSEPGNQA--PDHEHGHSEVLLEDVEHLKVKQEPT 153
Query: 618 SPQPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKE 791
Q Q + T +YES+ QE QD +S +++E KQE KE
Sbjct: 154 DIQLQPMVTQLRYESFCLHQFQE--------------QDGESIPENQELASKQEILKE 197
>ref|NP_001128688.1| zinc finger protein 323 isoform 1 [Homo sapiens].
Length = 406
Score = 138 bits (347), Expect = 9e-33
Identities = 87/178 (48%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E RQ FRQF Y +TPGPREALS+LR LC +WLRPEIHTKEQILELLVLEQFLTILP+EL
Sbjct: 36 EASRQLFRQFCYQETPGPREALSRLRELCHQWLRPEIHTKEQILELLVLEQFLTILPEEL 95
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQS---WETMSSGTTKESLS 617
QAWV+EH PES EEAV P QA P E S E + K+ +
Sbjct: 96 QAWVREHHPESGEEAVAVVEDLEQELSEPGNQA--PDHEHGHSEVLLEDVEHLKVKQEPT 153
Query: 618 SPQPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKE 791
Q Q + T +YES+ QE QD +S +++E KQE KE
Sbjct: 154 DIQLQPMVTQLRYESFCLHQFQE--------------QDGESIPENQELASKQEILKE 197
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,940,452
Number of extensions: 994112
Number of successful extensions: 12036
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 12008
Number of HSP's successfully gapped: 82
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003723
(1004 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038170.1| zinc finger and SCAN domain-containing prote... 263 1e-76
Alignment gi|NP_001038169.1| zinc finger and SCAN domain-containing prote... 263 1e-76
Alignment gi|NP_001038168.1| zinc finger and SCAN domain-containing prote... 263 1e-76
Alignment gi|NP_035887.2| zinc finger and SCAN domain-containing protein ... 263 1e-76
Alignment gi|NP_081283.2| zinc finger protein 397 [Mus musculus]. 147 1e-35
Alignment gi|NP_001161416.1| zinc finger protein with KRAB and SCAN domai... 137 1e-32
Alignment gi|NP_057892.2| zinc finger protein with KRAB and SCAN domains ... 137 1e-32
Alignment gi|NP_067534.2| zinc finger protein 24 [Mus musculus]. 136 2e-32
Alignment gi|NP_849220.3| zinc finger and SCAN domain-containing protein ... 122 4e-28
Alignment gi|NP_084145.1| zinc finger protein with KRAB and SCAN domains ... 118 4e-27
>ref|NP_001038170.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 263 bits (672), Expect(2) = 1e-76
Identities = 137/215 (63%), Positives = 159/215 (73%), Gaps = 3/215 (1%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+ RQRFRQFGYHDTPGPREALSQLRVLCCEWL+PEIHTKEQILELLVLEQFLTILP+EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMS-SGTTKESLSSP 623
Q WVQ+HCPESAEEAVT P Q S PP EQ QSWE MS SGT ESLSS
Sbjct: 179 QTWVQQHCPESAEEAVTLLEDLEQELDEPGLQVSSPPNEQKQSWEKMSTSGTAMESLSST 238
Query: 624 QPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGS-KESHA 800
+ Q ++ +YE WGPLYIQETGEE+ FT + RK Q KSN Q E++ D+ S +ESHA
Sbjct: 239 ETQHVDASPKYEFWGPLYIQETGEEEVFTQDPRKRQGFKSNPQKEDSADEHRSSEEESHA 298
Query: 801 EEFRRDTVPMIIASKCEARVERQ-KSNLKRKEEQK 902
+ +R +PMI A+K +R ERQ +NL+R+ K
Sbjct: 299 DGLKRTVIPMIPANKYGSRSERQWANNLERERGTK 333
Score = 42.4 bits (98), Expect(2) = 1e-76
Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +2
Query: 881 EKERGTKTPLX------GKVPPNVGSKY*TCPGERRYICAECGKAFS 1003
E+ERGTK L G P + PGE+RYICAECGKAFS
Sbjct: 327 ERERGTKASLQDTGSRKGAEPASTRP----APGEKRYICAECGKAFS 369
>ref|NP_001038169.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 263 bits (672), Expect(2) = 1e-76
Identities = 137/215 (63%), Positives = 159/215 (73%), Gaps = 3/215 (1%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+ RQRFRQFGYHDTPGPREALSQLRVLCCEWL+PEIHTKEQILELLVLEQFLTILP+EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMS-SGTTKESLSSP 623
Q WVQ+HCPESAEEAVT P Q S PP EQ QSWE MS SGT ESLSS
Sbjct: 179 QTWVQQHCPESAEEAVTLLEDLEQELDEPGLQVSSPPNEQKQSWEKMSTSGTAMESLSST 238
Query: 624 QPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGS-KESHA 800
+ Q ++ +YE WGPLYIQETGEE+ FT + RK Q KSN Q E++ D+ S +ESHA
Sbjct: 239 ETQHVDASPKYEFWGPLYIQETGEEEVFTQDPRKRQGFKSNPQKEDSADEHRSSEEESHA 298
Query: 801 EEFRRDTVPMIIASKCEARVERQ-KSNLKRKEEQK 902
+ +R +PMI A+K +R ERQ +NL+R+ K
Sbjct: 299 DGLKRTVIPMIPANKYGSRSERQWANNLERERGTK 333
Score = 42.4 bits (98), Expect(2) = 1e-76
Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +2
Query: 881 EKERGTKTPLX------GKVPPNVGSKY*TCPGERRYICAECGKAFS 1003
E+ERGTK L G P + PGE+RYICAECGKAFS
Sbjct: 327 ERERGTKASLQDTGSRKGAEPASTRP----APGEKRYICAECGKAFS 369
>ref|NP_001038168.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 263 bits (672), Expect(2) = 1e-76
Identities = 137/215 (63%), Positives = 159/215 (73%), Gaps = 3/215 (1%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+ RQRFRQFGYHDTPGPREALSQLRVLCCEWL+PEIHTKEQILELLVLEQFLTILP+EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMS-SGTTKESLSSP 623
Q WVQ+HCPESAEEAVT P Q S PP EQ QSWE MS SGT ESLSS
Sbjct: 179 QTWVQQHCPESAEEAVTLLEDLEQELDEPGLQVSSPPNEQKQSWEKMSTSGTAMESLSST 238
Query: 624 QPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGS-KESHA 800
+ Q ++ +YE WGPLYIQETGEE+ FT + RK Q KSN Q E++ D+ S +ESHA
Sbjct: 239 ETQHVDASPKYEFWGPLYIQETGEEEVFTQDPRKRQGFKSNPQKEDSADEHRSSEEESHA 298
Query: 801 EEFRRDTVPMIIASKCEARVERQ-KSNLKRKEEQK 902
+ +R +PMI A+K +R ERQ +NL+R+ K
Sbjct: 299 DGLKRTVIPMIPANKYGSRSERQWANNLERERGTK 333
Score = 42.4 bits (98), Expect(2) = 1e-76
Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +2
Query: 881 EKERGTKTPLX------GKVPPNVGSKY*TCPGERRYICAECGKAFS 1003
E+ERGTK L G P + PGE+RYICAECGKAFS
Sbjct: 327 ERERGTKASLQDTGSRKGAEPASTRP----APGEKRYICAECGKAFS 369
>ref|NP_035887.2| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 263 bits (672), Expect(2) = 1e-76
Identities = 137/215 (63%), Positives = 159/215 (73%), Gaps = 3/215 (1%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+ RQRFRQFGYHDTPGPREALSQLRVLCCEWL+PEIHTKEQILELLVLEQFLTILP+EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMS-SGTTKESLSSP 623
Q WVQ+HCPESAEEAVT P Q S PP EQ QSWE MS SGT ESLSS
Sbjct: 179 QTWVQQHCPESAEEAVTLLEDLEQELDEPGLQVSSPPNEQKQSWEKMSTSGTAMESLSST 238
Query: 624 QPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGS-KESHA 800
+ Q ++ +YE WGPLYIQETGEE+ FT + RK Q KSN Q E++ D+ S +ESHA
Sbjct: 239 ETQHVDASPKYEFWGPLYIQETGEEEVFTQDPRKRQGFKSNPQKEDSADEHRSSEEESHA 298
Query: 801 EEFRRDTVPMIIASKCEARVERQ-KSNLKRKEEQK 902
+ +R +PMI A+K +R ERQ +NL+R+ K
Sbjct: 299 DGLKRTVIPMIPANKYGSRSERQWANNLERERGTK 333
Score = 42.4 bits (98), Expect(2) = 1e-76
Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +2
Query: 881 EKERGTKTPLX------GKVPPNVGSKY*TCPGERRYICAECGKAFS 1003
E+ERGTK L G P + PGE+RYICAECGKAFS
Sbjct: 327 ERERGTKASLQDTGSRKGAEPASTRP----APGEKRYICAECGKAFS 369
>ref|NP_081283.2| zinc finger protein 397 [Mus musculus].
Length = 527
Score = 147 bits (372), Expect = 1e-35
Identities = 90/221 (40%), Positives = 123/221 (55%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQ+FR+F YH+TPGPREAL +L+ LC +WL PE+HTKEQILELLVLEQFL+ILP+EL
Sbjct: 47 ELFRQQFRKFCYHETPGPREALGRLQELCHQWLMPELHTKEQILELLVLEQFLSILPEEL 106
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
+ WVQ+H P+S EEAVT P QQ + S SW+ ++ T + +S Q
Sbjct: 107 KIWVQQHGPKSGEEAVTLLEDLEKEFDDPGQQVPDNLQGPSVSWKDLTYLKTSQDSTSIQ 166
Query: 627 PQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKESHAEE 806
+ L+T Q +SW P KS+ ++ E+T K++ S+E A E
Sbjct: 167 VRPLKT--QLKSWNPCL------------------SSKSDAKNNESTAKEDISEEK-APE 205
Query: 807 FRRDTVPMIIASKCEARVERQKSNLKRKEEQKPLSXARFPQ 929
D C V KSNL+ ++ P+ F Q
Sbjct: 206 LSWD-------PSCRG-VSEHKSNLEWQQRSSPVHRGSFSQ 238
>ref|NP_001161416.1| zinc finger protein with KRAB and SCAN domains 5 isoform 2 [Mus
musculus].
Length = 746
Score = 137 bits (346), Expect = 1e-32
Identities = 71/118 (60%), Positives = 81/118 (68%)
Frame = +3
Query: 264 LEMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQE 443
LE F QRF+ F YH+ GPR+ALSQLRVLCCEWLRPE+HTKEQILELLVLEQFLTILP+E
Sbjct: 46 LETFYQRFKHFQYHEAAGPRDALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEE 105
Query: 444 LQAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLS 617
QAWV+EH PES EEAV QQ + P Q + + G T+ES S
Sbjct: 106 FQAWVREHHPESGEEAVAVIESIQRELEERRQQIATSPEVLPQ--KMVPPGATQESFS 161
>ref|NP_057892.2| zinc finger protein with KRAB and SCAN domains 5 isoform 1 [Mus
musculus].
Length = 819
Score = 137 bits (346), Expect = 1e-32
Identities = 71/118 (60%), Positives = 81/118 (68%)
Frame = +3
Query: 264 LEMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQE 443
LE F QRF+ F YH+ GPR+ALSQLRVLCCEWLRPE+HTKEQILELLVLEQFLTILP+E
Sbjct: 46 LETFYQRFKHFQYHEAAGPRDALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEE 105
Query: 444 LQAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLS 617
QAWV+EH PES EEAV QQ + P Q + + G T+ES S
Sbjct: 106 FQAWVREHHPESGEEAVAVIESIQRELEERRQQIATSPEVLPQ--KMVPPGATQESFS 161
>ref|NP_067534.2| zinc finger protein 24 [Mus musculus].
Length = 368
Score = 136 bits (343), Expect = 2e-32
Identities = 70/133 (52%), Positives = 88/133 (66%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQRFRQFGY D+PGPREA+SQLR LC WLRPE HTKEQILEL+VLEQF+ ILP+EL
Sbjct: 49 EVFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WV+EH PE+ EEAV P Q S +++ E ++S + L S +
Sbjct: 109 QTWVREHHPENGEEAVAVLEDLESELDDPGQPVSLRRQKREVLVEEITSQEDAQGLPSSE 168
Query: 627 PQALETGHQYESW 665
A+E ++ SW
Sbjct: 169 LDAVENQLKWASW 181
>ref|NP_849220.3| zinc finger and SCAN domain-containing protein 29 [Mus musculus].
Length = 869
Score = 122 bits (306), Expect = 4e-28
Identities = 62/129 (48%), Positives = 78/129 (60%)
Frame = +3
Query: 255 GKRLEMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTIL 434
G E RQRFR+F Y + GPREA SQL LCC WLRPE+ TKEQI+ELLVLEQFLT+L
Sbjct: 10 GTSSESLRQRFRRFHYQEVAGPREAFSQLWELCCRWLRPEVRTKEQIVELLVLEQFLTVL 69
Query: 435 PQELQAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESL 614
P E+Q WVQ+ CPE+ EEAVT P + + Q E M+ + + L
Sbjct: 70 PVEIQNWVQKQCPENGEEAVTLVEDLERESGRPGHSVTVSVKGQEMHSEKMTPLKSSQEL 129
Query: 615 SSPQPQALE 641
S +++E
Sbjct: 130 LSVLQESVE 138
>ref|NP_084145.1| zinc finger protein with KRAB and SCAN domains 1 isoform 2 [Mus
musculus].
Length = 488
Score = 118 bits (296), Expect(2) = 4e-27
Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 17/217 (7%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQRFR+F Y +T GPREAL++L+ LC +WLRPE+++KEQILELLVLEQFL+ILP+EL
Sbjct: 53 EVFRQRFRRFCYQNTFGPREALNRLKELCHQWLRPEVNSKEQILELLVLEQFLSILPKEL 112
Query: 447 QAWVQEHCPESAEEAVT---XXXXXXXXXXXPAQQASP----------PPREQSQSWETM 587
Q W+QE+ P+S EEAVT P Q P P ++S S++
Sbjct: 113 QVWLQEYRPDSGEEAVTLLEDLELDLSGQQVPGQVHGPEMLARGVVPLDPVQESSSFDHH 172
Query: 588 SSGTTKESLSSPQPQALETGHQ----YESWGPLYIQETGEEQGFTPELRKIQDHKSNTQH 755
+ + SS +P+ L G + ES ++E G + + + Q
Sbjct: 173 ETAQSHFKHSSRKPRLLSRGSENRNGNESTSKAEVKEDSTSHGEIAGRFQKEFGEKREQQ 232
Query: 756 EETTDKQEGSKESHAEEFRRDTVPMIIASKCEARVER 866
++Q+ + E + +++ P K + ER
Sbjct: 233 GRVVERQQKNPEEKTGKEKKEPGPPTAKEKKPSTGER 269
Score = 21.6 bits (44), Expect(2) = 4e-27
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 959 GERRYICAECGKAFS 1003
G + + C ECGK F+
Sbjct: 298 GAKTHRCDECGKCFT 312
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,168,994
Number of extensions: 825732
Number of successful extensions: 9333
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 9305
Number of HSP's successfully gapped: 51
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003723
(1004 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928110.1| PREDICTED: zinc finger and SCAN domain-conta... 448 e-126
Alignment gi|XP_003356634.1| PREDICTED: zinc finger protein 323 [Sus scro... 142 2e-36
Alignment gi|XP_003356632.1| PREDICTED: zinc finger and SCAN domain-conta... 134 2e-35
Alignment gi|XP_003128280.2| PREDICTED: zinc finger and SCAN domain-conta... 137 8e-35
Alignment gi|XP_003127944.2| PREDICTED: zinc finger protein 397-like [Sus... 140 1e-33
Alignment gi|NP_001230304.1| zinc finger protein 24 [Sus scrofa]. 139 3e-33
Alignment gi|XP_003127945.1| PREDICTED: zinc finger and SCAN domain-conta... 137 7e-33
Alignment gi|XP_003131966.2| PREDICTED: zinc finger protein 232-like [Sus... 130 3e-32
Alignment gi|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-... 134 8e-32
Alignment gi|XP_003124371.2| PREDICTED: zinc finger protein with KRAB and... 131 7e-31
>ref|XP_001928110.1| PREDICTED: zinc finger and SCAN domain-containing protein 21-like
[Sus scrofa].
Length = 469
Score = 448 bits (1152), Expect = e-126
Identities = 225/267 (84%), Positives = 233/267 (87%), Gaps = 1/267 (0%)
Frame = +3
Query: 159 MMTKVLGMATVLGPRPPQEQGPVIXXXXXXXXGKRLEMFRQRFRQFGYHDTPGPREALSQ 338
MMTKVLGMATVLGP PPQEQGPVI GKRLEMFRQRFRQFGYHDTPGPREALSQ
Sbjct: 1 MMTKVLGMATVLGPTPPQEQGPVIVKVEEEEKGKRLEMFRQRFRQFGYHDTPGPREALSQ 60
Query: 339 LRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTXXXXXXX 518
LRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVT
Sbjct: 61 LRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCPESAEEAVTLLEDLER 120
Query: 519 XXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQPQALETGHQYESWGPLYIQETGEE 698
PAQQASPPPREQSQSWETMSSGTTKESLSSPQPQAL+TGHQYESWGPLYIQETGEE
Sbjct: 121 ELDEPAQQASPPPREQSQSWETMSSGTTKESLSSPQPQALKTGHQYESWGPLYIQETGEE 180
Query: 699 QGFTPELRKIQDHKSNTQHEETTDKQEGSKESHAEEFRRDTVPMIIASKCEARVERQKSN 878
QGFTPELRKIQDHKSNTQHEETTDKQEGSKESHAEEFRRDTVPMIIASKCEAR+ERQ+ N
Sbjct: 181 QGFTPELRKIQDHKSNTQHEETTDKQEGSKESHAEEFRRDTVPMIIASKCEARLERQRVN 240
Query: 879 LKRKEEQK-PLSXARFPQT*GVNTKPA 956
L+++ K PL P+ + TKPA
Sbjct: 241 LEKERGTKTPLQGKGSPKRRELITKPA 267
Score = 55.1 bits (131), Expect = 6e-08
Identities = 29/42 (69%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +2
Query: 881 EKERGTKTPLXGKVPPNVGSKY*T-CPGERRYICAECGKAFS 1003
EKERGTKTPL GK P PGERRYICAECGKAFS
Sbjct: 242 EKERGTKTPLQGKGSPKRRELITKPAPGERRYICAECGKAFS 283
>ref|XP_003356634.1| PREDICTED: zinc finger protein 323 [Sus scrofa].
Length = 438
Score = 142 bits (359), Expect(2) = 2e-36
Identities = 98/214 (45%), Positives = 123/214 (57%), Gaps = 10/214 (4%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E RQ FR F Y +TPGPREALS+LR LC +WLRP+ HTKEQILELLVLEQFLTILP+EL
Sbjct: 36 EASRQLFRHFCYQETPGPREALSRLRELCHQWLRPDTHTKEQILELLVLEQFLTILPEEL 95
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGT----TKESL 614
QAWV+EH PES EEAV P QA P E S E +S K+
Sbjct: 96 QAWVREHHPESGEEAVAAVEDLERELSEPENQA--PDCEHGHS-EVLSGDAVHLKAKQES 152
Query: 615 SSPQPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKE- 791
++ Q Q++ T +YES+GP Q+ GE QD ++ ++++ KQE KE
Sbjct: 153 AATQLQSMVTQLKYESFGP---QKLGE-----------QDGETILENKDLVSKQEVLKEM 198
Query: 792 SHAEEFR-RDTVPMII----ASKCEARVERQKSN 878
H E R + VP+ A K E RVE Q+ +
Sbjct: 199 GHFENSRLQRDVPLDSKYREACKRENRVENQRGH 232
Score = 27.7 bits (60), Expect(2) = 2e-36
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 959 GERRYICAECGKAFS 1003
GERR+ C ECGK+F+
Sbjct: 235 GERRHRCNECGKSFT 249
>ref|XP_003356632.1| PREDICTED: zinc finger and SCAN domain-containing protein 12-like
[Sus scrofa].
Length = 611
Score = 134 bits (337), Expect(2) = 2e-35
Identities = 93/234 (39%), Positives = 117/234 (50%), Gaps = 22/234 (9%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQ FR F Y +T GPREALS+LR LC +WLRPE HTKEQILELLVLEQFLTILP+EL
Sbjct: 51 EVFRQHFRHFCYQETSGPREALSRLRELCHQWLRPETHTKEQILELLVLEQFLTILPEEL 110
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQ-----------SQSWETMSS 593
QAWVQE PES EE VT P Q S EQ S+ MS
Sbjct: 111 QAWVQEQHPESGEEVVTVLEALERELDEPGYQVSVHTEEQEMFLQEVAPLGSEQEPGMSL 170
Query: 594 GTTKESLSSPQPQA---------LETGHQYESWGPLYIQETGEEQGFTPELRKIQDHK-- 740
+ K L P ++TG++Y + P QE EE + +++
Sbjct: 171 PSVKVQLKCESPDLEAQQEQVSDVDTGNEYRNLTPK--QEVSEEMKSYGNISSKFENEIA 228
Query: 741 SNTQHEETTDKQEGSKESHAEEFRRDTVPMIIASKCEARVERQKSNLKRKEEQK 902
+T +E+T + QE ++E R DT C N R E+Q+
Sbjct: 229 QSTGYEKTCEPQEKTEEPSGYS-REDT--------CHENGVSLTENSDRPEQQR 273
Score = 33.1 bits (74), Expect(2) = 2e-35
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 953 CPGERRYICAECGKAFS 1003
CPGE+ Y C +CGKAFS
Sbjct: 275 CPGEKLYECDDCGKAFS 291
>ref|XP_003128280.2| PREDICTED: zinc finger and SCAN domain-containing protein 23-like
isoform 1 [Sus scrofa].
Length = 389
Score = 137 bits (344), Expect(2) = 8e-35
Identities = 94/213 (44%), Positives = 115/213 (53%), Gaps = 11/213 (5%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FR+RFRQF Y +TPGPREAL +L+ LC +WLRPE+H+KEQILELLVLEQFLTILP+EL
Sbjct: 45 EIFRRRFRQFCYQETPGPREALRRLQELCHQWLRPEMHSKEQILELLVLEQFLTILPEEL 104
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSS---GTTKESLS 617
QAWV+EH P S EEAVT P +Q P R+ Q G +ES S
Sbjct: 105 QAWVREHRPGSGEEAVTVLEDLERELDEPGEQV--PTRDHVQEEPVKGKTILGAAQES-S 161
Query: 618 SPQPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKESH 797
S Q Q LE Q QET D K+ T + E K+E SKE
Sbjct: 162 SGQHQTLEEQSQCNLEELCPAQET--------------DDKAGTWNAELAPKRELSKEMK 207
Query: 798 -----AEEFRRDTVPMIIASKC---EARVERQK 872
E+ D + M + E R+ERQ+
Sbjct: 208 PLVEVTEKLNGDIIRMPECGETCEHEGRLERQR 240
Score = 28.5 bits (62), Expect(2) = 8e-35
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 950 TCPGERRYICAECGKAFS 1003
T GER Y C ECG+AFS
Sbjct: 270 THTGERPYECDECGRAFS 287
>ref|XP_003127944.2| PREDICTED: zinc finger protein 397-like [Sus scrofa].
Length = 534
Score = 140 bits (353), Expect = 1e-33
Identities = 78/175 (44%), Positives = 104/175 (59%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQ+FR+F Y +TPGPREAL +L+ LC +WLRPE+HTKEQILELLVLEQFL+ILP+EL
Sbjct: 47 ELFRQQFRKFCYQETPGPREALGRLQELCYQWLRPEVHTKEQILELLVLEQFLSILPEEL 106
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WVQ+H P+S EEAVT P QQ P+ + W+ M + L+ Q
Sbjct: 107 QIWVQQHSPKSGEEAVTLLEDLEREFDDPGQQVPASPQGPAVPWKDMPCLGPSQDLTDIQ 166
Query: 627 PQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQEGSKE 791
Q L+T Q E +P+ S+ +H+E+ K++ SKE
Sbjct: 167 LQPLKT------------QLKPREPCLSPQ--------SDCKHKESATKKDISKE 201
>ref|NP_001230304.1| zinc finger protein 24 [Sus scrofa].
Length = 368
Score = 139 bits (349), Expect = 3e-33
Identities = 72/133 (54%), Positives = 88/133 (66%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQRFRQFGY D+PGPREA+SQLR LC WLRPE HTKEQILEL+VLEQF+ ILP+EL
Sbjct: 49 EVFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q WV+EH PE+ EEAVT P Q S R++ E + S + L S +
Sbjct: 109 QTWVREHHPENGEEAVTVLEDLESELDDPGQPVSLRRRKRDVLVEEIVSQEEAQGLPSSE 168
Query: 627 PQALETGHQYESW 665
A+E ++ SW
Sbjct: 169 LDAVENQLKWASW 181
>ref|XP_003127945.1| PREDICTED: zinc finger and SCAN domain-containing protein 30 [Sus
scrofa].
Length = 492
Score = 137 bits (346), Expect = 7e-33
Identities = 76/140 (54%), Positives = 90/140 (64%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
+ FRQRFRQFGY D+ GPREALS+LR LCC WLRPE+H+KEQILELLVLEQFL ILP+EL
Sbjct: 45 DAFRQRFRQFGYSDSAGPREALSRLRELCCLWLRPEVHSKEQILELLVLEQFLAILPEEL 104
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q W+ E+ PES EEAV P QQ + Q W+ M+S +SL S Q
Sbjct: 105 QTWLLENRPESGEEAVVMLEELEKELDEPRQQDT--AHAQGMMWKEMTSVGALKSL-SVQ 161
Query: 627 PQALETGHQYESWGPLYIQE 686
Q LE H+ E+ P E
Sbjct: 162 LQPLENQHKSETQEPQAFSE 181
>ref|XP_003131966.2| PREDICTED: zinc finger protein 232-like [Sus scrofa].
Length = 429
Score = 130 bits (328), Expect(2) = 3e-32
Identities = 86/224 (38%), Positives = 111/224 (49%), Gaps = 11/224 (4%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+FRQRFRQ Y + PGPREAL +LR LCCEWLRPE HTKEQILE LVLEQFLTILP+EL
Sbjct: 40 EIFRQRFRQLCYQEAPGPREALRRLRALCCEWLRPERHTKEQILEFLVLEQFLTILPEEL 99
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESLSSPQ 626
Q+ V+ H P+SAEEAVT P Q P R +Q P+
Sbjct: 100 QSRVRGHHPQSAEEAVTVLEDLEKGHDEPGPQVPGPARGPAQ--------------QEPR 145
Query: 627 PQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETTDKQ---------- 776
+ G E G IQ + PE ++ H + E+ + +
Sbjct: 146 EEKAPLGAAQEKAG---IQLQPRDTRPFPESEQVYLHFQSVIAEDDAEPEDKGSLPQPPI 202
Query: 777 -EGSKESHAEEFRRDTVPMIIASKCEARVERQKSNLKRKEEQKP 905
E + E+ T AS+ EA E Q+ NL+ + ++P
Sbjct: 203 AEVEAQVLREKLTSSTSTFEGASEAEAPFEEQQRNLRGERPRRP 246
Score = 26.2 bits (56), Expect(2) = 3e-32
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 956 PGERRYICAECGKAF 1000
PG++ + C ECGKAF
Sbjct: 265 PGKKDHECLECGKAF 279
>ref|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-like [Sus scrofa].
Length = 1323
Score = 134 bits (337), Expect = 8e-32
Identities = 89/223 (39%), Positives = 113/223 (50%), Gaps = 13/223 (5%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E+ RQRFRQ Y +TPGPREALSQLR LC +WL PEIHTKEQILELLVLEQ LTILP+EL
Sbjct: 49 ELSRQRFRQLCYQETPGPREALSQLRELCRQWLSPEIHTKEQILELLVLEQLLTILPEEL 108
Query: 447 QAWVQEHCPESAEEAVTXXXXXXXXXXXPAQQASPPPREQSQSWETMSSGTTKESL---- 614
QAWV+EH PES EE VT P QQ Q E M+ KESL
Sbjct: 109 QAWVREHHPESGEEVVTVLEDLERELDEPRQQVPQATYGQEVPVEEMT--PAKESLGIHL 166
Query: 615 ---------SSPQPQALETGHQYESWGPLYIQETGEEQGFTPELRKIQDHKSNTQHEETT 767
SP+P L+ + W + Q G++ + +++ + E
Sbjct: 167 QSIEDRMECESPEPHPLQDNGSF-LWLSMMSQSMGDD-----NFSSLDTNEAEIEPENMR 220
Query: 768 DKQEGSKESHAEEFRRDTVPMIIASKCEARVERQKSNLKRKEE 896
+K S E +T A C+ E +++ K K+E
Sbjct: 221 EKFFRSLSVLLENKSNNTKIFSKAKYCQLIREVKEAKAKAKKE 263
>ref|XP_003124371.2| PREDICTED: zinc finger protein with KRAB and SCAN domains 5-like
[Sus scrofa].
Length = 199
Score = 131 bits (329), Expect = 7e-31
Identities = 61/76 (80%), Positives = 66/76 (86%)
Frame = +3
Query: 267 EMFRQRFRQFGYHDTPGPREALSQLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQEL 446
E F QRF+ F YH+ GPREALSQLRVLCCEWLRPE+HTKEQILELLVLEQFLTILP+E
Sbjct: 45 ETFYQRFKHFQYHEASGPREALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEEF 104
Query: 447 QAWVQEHCPESAEEAV 494
Q WV+EH PES EEAV
Sbjct: 105 QTWVREHHPESGEEAV 120
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,268,011
Number of extensions: 627470
Number of successful extensions: 5346
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 5328
Number of HSP's successfully gapped: 53
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003723
(1004 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1844 0.0
Sscrofa_Chr03 948 0.0
Sscrofa_Chr07 186 2e-44
Sscrofa_Chr12 155 6e-35
Sscrofa_Chr06 149 3e-33
Sscrofa_Chr13 129 3e-27
Sscrofa_Chr02 111 7e-22
Sscrofa_ChrX 88 1e-14
Sscrofa_Chr17 64 2e-07
Sscrofa_Chr09 64 2e-07
>Sscrofa_Chr14
|| Length = 153851969
Score = 1844 bits (930), Expect = 0.0
Identities = 993/1008 (98%), Gaps = 6/1008 (0%)
Strand = Plus / Minus
Query: 2 ggttgcgccagcccctgtgagtagccaggcgtcccagcccgcgagcggttctgactcacc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084662 ggttgcgccagcccctgtgagtagccaggcgtcccagcccgcgagcggttctgactcacc 40084603
Query: 62 gtttaacctgaggccctagagaaccagaaacccagaggaaccgatactcctggcacacag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084602 gtttaacctgaggccctagagaaccagaaacccagaggaaccgatactcctggcacacag 40084543
Query: 122 agccccatatttagtgacactgttttggagtacctgaatgatgaccaaggtcctgggcat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084542 agccccatatttagtgacactgttttggagtacctgaatgatgaccaaggtcctgggcat 40084483
Query: 182 ggccacggtcctgggcccgaggccaccacaggaacaggggcccgtgattgtgaaagtcga 241
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 40084482 ggccacggtcctgggcccgacgccgccacaggaacaggggcccgtgattgtgaaagtcga 40084423
Query: 242 ggaggaagagaaagggaagcgcttggagatgttccgccagcgcttcaggcagttcgggta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084422 ggaggaagagaaagggaagcgcttggagatgttccgccagcgcttcaggcagttcgggta 40084363
Query: 302 ccatgacacacctgggccccgggaggccctcagccagctccgggtgctctgctgtgagtg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084362 ccatgacacacctgggccccgggaggccctcagccagctccgggtgctctgctgtgagtg 40084303
Query: 362 gctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagcagtt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084302 gctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagcagtt 40084243
Query: 422 cctgaccatcctgccccaggagctccaggcctgggtgcaggagcactgcccagagagtgc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084242 cctgaccatcctgccccaggagctccaggcctgggtgcaggagcactgcccagagagtgc 40084183
Query: 482 tgaagaggccgtcactctcctggaagatctggagcgagaactggatgaaccagcacagca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084182 tgaagaggccgtcactctcctggaagatctggagcgagaactggatgaaccagcacagca 40084123
Query: 542 ggcctcaccgcctccgcgtgaacagagccagtcgtgggagacgatgtcctcaggaacgac 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084122 ggcctcaccgcctccgcgtgaacagagccagtcgtgggagacgatgtcctcaggaacgac 40084063
Query: 602 caaggagtccctgagcagcccgcagccccaggctctggagaccgggcaccagtacgagtc 661
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 40084062 caaggagtccctgagcagcccgcagccccaggctctgaagaccgggcaccagtacgagtc 40084003
Query: 662 ttgggggcccctctacatccaagagactggcgaggagcagggtttcacgccagagctaag 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40084002 ttgggggcccctctacatccaagagactggcgaggagcagggtttcacgccagagctaag 40083943
Query: 722 aaagattcaagatcataaatcgaacacccagcatgaggaaacaacagataagcaggaagg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40083942 aaagattcaagatcataaatcgaacacccagcatgaggaaacaacagataagcaggaagg 40083883
Query: 782 ttctaaagaatctcatgcagaagaattcagaagggatactgttcccatgattattgccag 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40083882 ttctaaagaatctcatgcagaagaattcagaagggatactgttcccatgattattgccag 40083823
Query: 842 taaatgtgaggccagggttgaaaggcagaagagtaa--cctgaaaaggaaagaggaacaa 899
|||||||||||||||| | ||||||||| ||||||| | ||||||||||||||||||||
Sbjct: 40083822 taaatgtgaggccaggttagaaaggcag-agagtaaaccttgaaaaggaaagaggaacaa 40083764
Query: 900 aaacccctctccnaggc-aaggttcccccaaacgtagggag-taaatactaaacctg-cc 956
|||||||||||| |||| ||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 40083763 aaacccctctccaaggcaaaggttcccccaaacgtagggagttaattactaaacctgccc 40083704
Query: 957 caggagagagacgttacatatgtgctgagtgtgggaaggcctttagta 1004
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 40083703 caggagagagacgttacatatgtgctgagtgtgggaaagcctttagta 40083656
>Sscrofa_Chr03
|| Length = 144787322
Score = 948 bits (478), Expect = 0.0
Identities = 481/482 (99%)
Strand = Plus / Plus
Query: 62 gtttaacctgaggccctagagaaccagaaacccagaggaaccgatactcctggcacacag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7262439 gtttaacctgaggccctagagaaccagaaacccagaggaaccgatactcctggcacacag 7262498
Query: 122 agccccatatttagtgacactgttttggagtacctgaatgatgaccaaggtcctgggcat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7262499 agccccatatttagtgacactgttttggagtacctgaatgatgaccaaggtcctgggcat 7262558
Query: 182 ggccacggtcctgggcccgaggccaccacaggaacaggggcccgtgattgtgaaagtcga 241
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7262559 ggccacggtcctgggcccgaggccgccacaggaacaggggcccgtgattgtgaaagtcga 7262618
Query: 242 ggaggaagagaaagggaagcgcttggagatgttccgccagcgcttcaggcagttcgggta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7262619 ggaggaagagaaagggaagcgcttggagatgttccgccagcgcttcaggcagttcgggta 7262678
Query: 302 ccatgacacacctgggccccgggaggccctcagccagctccgggtgctctgctgtgagtg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7262679 ccatgacacacctgggccccgggaggccctcagccagctccgggtgctctgctgtgagtg 7262738
Query: 362 gctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagcagtt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7262739 gctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagcagtt 7262798
Query: 422 cctgaccatcctgccccaggagctccaggcctgggtgcaggagcactgcccagagagtgc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7262799 cctgaccatcctgccccaggagctccaggcctgggtgcaggagcactgcccagagagtgc 7262858
Query: 482 tgaagaggccgtcactctcctggaagatctggagcgagaactggatgaaccagcacagca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7262859 tgaagaggccgtcactctcctggaagatctggagcgagaactggatgaaccagcacagca 7262918
Query: 542 gg 543
||
Sbjct: 7262919 gg 7262920
Score = 422 bits (213), Expect = e-115
Identities = 267/279 (95%), Gaps = 6/279 (2%)
Strand = Plus / Plus
Query: 731 agatcataaatcgaacacccagcatgaggaaacaacagataagcaggaaggttctaaaga 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7265038 agatcataaatcgaacacccagcatgaggaaacaacagataagcaggaaggttctaaaga 7265097
Query: 791 atctcatgcagaagaattcagaagggatactgttcccatgattattgccagtaaatgtga 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7265098 atctcatgcagaagaattcagaagggatactgttcccatgattattgccagtaaatgtga 7265157
Query: 851 ggccagggttgaaaggcagaagagtaa--cctgaaaaggaaagaggaacaaaaacccctc 908
||||||| | ||||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct: 7265158 ggccaggttagaaaggcag-agagtaaaccttgaaaaggaaagaggaacaaaaacccctc 7265216
Query: 909 tccnaggc-aaggttcccccaaacgtagggag-taaatactaaacctg-cccaggagaga 965
||| |||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 7265217 tccaaggcaaaggttcccccaaacgtagggagttaattactaaacctgccccaggagaga 7265276
Query: 966 gacgttacatatgtgctgagtgtgggaaggcctttagta 1004
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 7265277 gacgttacatatgtgctgagtgtgggaaagcctttagta 7265315
Score = 373 bits (188), Expect = e-100
Identities = 191/192 (99%)
Strand = Plus / Plus
Query: 541 aggcctcaccgcctccgcgtgaacagagccagtcgtgggagacgatgtcctcaggaacga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7263202 aggcctcaccgcctccgcgtgaacagagccagtcgtgggagacgatgtcctcaggaatga 7263261
Query: 601 ccaaggagtccctgagcagcccgcagccccaggctctggagaccgggcaccagtacgagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7263262 ccaaggagtccctgagcagcccgcagccccaggctctggagaccgggcaccagtacgagt 7263321
Query: 661 cttgggggcccctctacatccaagagactggcgaggagcagggtttcacgccagagctaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7263322 cttgggggcccctctacatccaagagactggcgaggagcagggtttcacgccagagctaa 7263381
Query: 721 gaaagattcaag 732
||||||||||||
Sbjct: 7263382 gaaagattcaag 7263393
Score = 200 bits (101), Expect = 1e-48
Identities = 131/141 (92%)
Strand = Plus / Minus
Query: 318 ccccgggaggccctcagccagctccgggtgctctgctgtgagtggctgaggcccgagatc 377
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct: 6609120 ccccgcgaggccctcagccagctccgggtgctctgctgtgaatggctgaggcctgagctg 6609061
Query: 378 cacaccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgccc 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6609060 cacaccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgccg 6609001
Query: 438 caggagctccaggcctgggtg 458
| ||| ||||| ||||||||
Sbjct: 6609000 gaagagttccagacctgggtg 6608980
Score = 161 bits (81), Expect = 9e-37
Identities = 135/153 (88%)
Strand = Plus / Minus
Query: 313 ctgggccccgggaggccctcagccagctccgggtgctctgctgtgagtggctgaggcccg 372
||||||||||||| |||||||||| ||||| || ||| ||| || ||||||| |||| |
Sbjct: 40300522 ctgggccccgggaagccctcagccggctccaggagctttgccatgggtggctgcggcctg 40300463
Query: 373 agatccacaccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcc 432
| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40300462 aaatgcgtaccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcc 40300403
Query: 433 tgccccaggagctccaggcctgggtgcaggagc 465
||||||||||| ||||| | ||||||||||||
Sbjct: 40300402 tgccccaggagatccagagcagggtgcaggagc 40300370
Score = 159 bits (80), Expect = 4e-36
Identities = 110/120 (91%)
Strand = Plus / Plus
Query: 359 gtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagca 418
||||||||||||||| || ||| | || ||||||||||| ||||||||||||||||||||
Sbjct: 6616511 gtggctgaggcccgaaatgcactcgaaagagcagatcctagagctgctggtgctggagca 6616570
Query: 419 gttcctgaccatcctgccccaggagctccaggcctgggtgcaggagcactgcccagagag 478
|||||||||||||||||||||||| |||||||||||||||| | ||||||||||| ||||
Sbjct: 6616571 gttcctgaccatcctgccccaggaactccaggcctgggtgcggaagcactgcccaaagag 6616630
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 2 ggttgcgccagcccctgtgagtagccaggcgtcccagcccgcgagcggttctgactcacc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7254637 ggttgcgccagcccctgtgagtagccaggcgtcccagcccgcgagcggttctgactcacc 7254696
Query: 62 gt 63
||
Sbjct: 7254697 gt 7254698
Score = 115 bits (58), Expect = 5e-23
Identities = 118/138 (85%)
Strand = Plus / Plus
Query: 379 acaccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgcccc 438
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 7184074 acaccaaggagcagatcctggagctgctggtgctggagcagttcctctccattctgccca 7184133
Query: 439 aggagctccaggcctgggtgcaggagcactgcccagagagtgctgaagaggccgtcactc 498
||||||| |||| |||| ||||||| || | || || |||| || |||||||| || |
Sbjct: 7184134 aggagctgcaggtctggctgcaggaataccgtcctgatagtggggaggaggccgtgaccc 7184193
Query: 499 tcctggaagatctggagc 516
| ||||||||| ||||||
Sbjct: 7184194 ttctggaagatttggagc 7184211
Score = 113 bits (57), Expect = 2e-22
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 318 ccccgggaggccctcagccagctccgggtgctctgctgtgagtggctgaggcccgagatc 377
|||||||||||||| || | |||| ||| ||||||||| |||||| |||| ||| |
Sbjct: 38704641 ccccgggaggccctgaggc-gctctgggagctctgctgccgctggctgcggcctgagctg 38704699
Query: 378 cacaccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgccc 437
| ||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct: 38704700 cgcaccaaggagcagatcctggagctgttggtgctggagcagttcctgaccgtgctgccg 38704759
Query: 438 caggagctccaggcctgggtgcaggagca 466
|||| ||||||||||||||| ||||||
Sbjct: 38704760 ggggagatccaggcctgggtgcgggagca 38704788
Score = 105 bits (53), Expect = 5e-20
Identities = 98/113 (86%)
Strand = Plus / Minus
Query: 314 tgggccccgggaggccctcagccagctccgggtgctctgctgtgagtggctgaggcccga 373
|||||||| |||||| ||||||||||| ||| ||||||||| |||||| |||||||
Sbjct: 40464896 tgggccccacgaggccttcagccagctctgggagctctgctgccgctggctgcggcccga 40464837
Query: 374 gatccacaccaaggagcagatcctggagctgctggtgctggagcagttcctga 426
| | | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40464836 gctgcgtactaaggagcagatcctggagctgctggtgctggagcagttcctga 40464784
Score = 89.7 bits (45), Expect = 3e-15
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 378 cacaccaaggagcagatcctggagctgctggtgctggagcagttcctga 426
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 40587275 cacaccaagaagcagatcctggagctgctggtgctggagcagttcctga 40587227
Score = 75.8 bits (38), Expect = 4e-11
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 338 gctccgggtgctctgctgtgagtggctgaggcccgagatccacaccaaggagcagatcct 397
||||||| ||||||| || ||||| || ||||||| | ||||||||||||||||| |
Sbjct: 40180072 gctccggcagctctgccgtcagtggttgcagcccgaggtgcacaccaaggagcagatttt 40180013
Query: 398 ggagctgctggtgctggagcagttcctgaccatcctgccccaggagctccaggc 451
|||||| |||||| |||||||||| ||| ||||||||||| ||| |||||||
Sbjct: 40180012 ggagctactggtggtggagcagtttttgaacatcctgccccccgagatccaggc 40179959
Score = 75.8 bits (38), Expect = 4e-11
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 360 tggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagcag 419
||||||||||| ||||| || | || ||||||||| |||||||||||||||| ||||||
Sbjct: 40278753 tggctgaggccagagattcattcaaaagagcagatcttggagctgctggtgctagagcag 40278694
Query: 420 ttcctgaccatcctgccc 437
|| |||||||| ||||||
Sbjct: 40278693 tttctgaccattctgccc 40278676
Score = 58.0 bits (29), Expect = 1e-05
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 382 ccaaggagcagatcctggagctgctggtgctggagcagttcctgaccat 430
||||||||||||||||||||||||| ||| | |||||||| || |||||
Sbjct: 21828356 ccaaggagcagatcctggagctgctcgtgattgagcagtttctcaccat 21828404
>Sscrofa_Chr07
|| Length = 134764511
Score = 186 bits (94), Expect = 2e-44
Identities = 220/262 (83%)
Strand = Plus / Minus
Query: 282 cgcttcaggcagttcgggtaccatgacacacctgggccccgggaggccctcagccagctc 341
||||||||||||||| | ||||| || || ||||||||||| ||||| || | |||
Sbjct: 24170720 cgcttcaggcagttctgctaccaggagacccctgggccccgagaggctcttcgaagactc 24170661
Query: 342 cgggtgctctgctgtgagtggctgaggcccgagatccacaccaaggagcagatcctggag 401
| || ||||||| | |||||||||| || ||||| |||| |||||||||||||||||||
Sbjct: 24170660 caggagctctgccatcagtggctgagaccagagatgcacagcaaggagcagatcctggag 24170601
Query: 402 ctgctggtgctggagcagttcctgaccatcctgccccaggagctccaggcctgggtgcag 461
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24170600 ctgctggtgctggagcagttcctgaccatcctgcccgaggagctccaggcctgggtgaga 24170541
Query: 462 gagcactgcccagagagtgctgaagaggccgtcactctcctggaagatctggagcgagaa 521
|||||| | |||| ||||| || ||||| || ||| | ||||| ||| ||||| ||||
Sbjct: 24170540 gagcaccgtccagggagtggagaggaggcagtaactgtgctggaggatttggagagagag 24170481
Query: 522 ctggatgaaccagcacagcagg 543
||||||||||||| | ||||||
Sbjct: 24170480 ctggatgaaccaggagagcagg 24170459
Score = 153 bits (77), Expect = 2e-34
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 24082289 agtggttgaggccagagacacacaccaaggagcagatcctggagctgctggtgctggagc 24082348
Query: 418 agttcctgaccatcctgccccaggagctccaggcctgggtgcagg 462
|||||||||||||||||||| | |||||||||||| |||||||||
Sbjct: 24082349 agttcctgaccatcctgcccaaagagctccaggcccgggtgcagg 24082393
Score = 145 bits (73), Expect = 5e-32
Identities = 145/169 (85%)
Strand = Plus / Minus
Query: 312 cctgggccccgggaggccctcagccagctccgggtgctctgctgtgagtggctgaggccc 371
||||| ||||| || || || |||| |||||||| |||||| | ||||||| |||||
Sbjct: 24121610 cctggtccccgagaagcactgagccggctccgggaactctgccatcagtggctaaggcca 24121551
Query: 372 gagatccacaccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatc 431
|| | || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24121550 gacacacataccaaggagcagatcctggagctactggtgctggagcagttcctgaccatc 24121491
Query: 432 ctgccccaggagctccaggcctgggtgcaggagcactgcccagagagtg 480
||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct: 24121490 ctgcctgaggagctccaggcctgggtgcgggagcatcacccagagagtg 24121442
Score = 137 bits (69), Expect = 1e-29
Identities = 99/109 (90%)
Strand = Plus / Plus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
|||||||| ||| |||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 24064878 agtggctgcagcctgagacccacagcaaggagcagatcctggagctactggtgctggagc 24064937
Query: 418 agttcctgaccatcctgccccaggagctccaggcctgggtgcaggagca 466
||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 24064938 agttcctgaccatcctgcctgaggagctccaggcccgggtgcgggagca 24064986
Score = 135 bits (68), Expect = 5e-29
Identities = 131/152 (86%)
Strand = Plus / Plus
Query: 285 ttcaggcagttcgggtaccatgacacacctgggccccgggaggccctcagccagctccgg 344
|||||||||||| | ||||| ||| | |||| ||||| ||||| || |||| ||||||
Sbjct: 23721670 ttcaggcagttctgctaccaggactccgctggaccccgtgaggcactgagccggctccga 23721729
Query: 345 gtgctctgctgtgagtggctgaggcccgagatccacaccaaggagcagatcctggagctg 404
| |||||||||| ||||||||| ||| || | ||| || |||||||||||||||||||||
Sbjct: 23721730 gagctctgctgtcagtggctgaagccagaaacccatactaaggagcagatcctggagctg 23721789
Query: 405 ctggtgctggagcagttcctgaccatcctgcc 436
||||| ||||||||||||||||||||||||||
Sbjct: 23721790 ctggttctggagcagttcctgaccatcctgcc 23721821
Score = 135 bits (68), Expect = 5e-29
Identities = 131/152 (86%)
Strand = Plus / Plus
Query: 285 ttcaggcagttcgggtaccatgacacacctgggccccgggaggccctcagccagctccgg 344
|||||||||||| | ||||| ||| | |||| ||||| ||||| || |||| ||||||
Sbjct: 23879254 ttcaggcagttctgctaccaggactccgctggaccccgtgaggcactgagccggctccga 23879313
Query: 345 gtgctctgctgtgagtggctgaggcccgagatccacaccaaggagcagatcctggagctg 404
| |||||||||| ||||||||| ||| || | ||| || |||||||||||||||||||||
Sbjct: 23879314 gagctctgctgtcagtggctgaagccagaaacccatactaaggagcagatcctggagctg 23879373
Query: 405 ctggtgctggagcagttcctgaccatcctgcc 436
||||| ||||||||||||||||||||||||||
Sbjct: 23879374 ctggttctggagcagttcctgaccatcctgcc 23879405
Score = 121 bits (61), Expect = 8e-25
Identities = 136/161 (84%)
Strand = Plus / Plus
Query: 273 ttccgccagcgcttcaggcagttcgggtaccatgacacacctgggccccgggaggccctc 332
||||||||| |||||||||||||| | ||||| || | ||||| || || ||||| ||
Sbjct: 23971957 ttccgccagtgcttcaggcagttccgttaccaggaggcccctggacctcgagaggctcta 23972016
Query: 333 agccagctccgggtgctctgctgtgagtggctgaggcccgagatccacaccaaggagcag 392
|||| ||||| || ||||||| |||||||| ||| ||||| |||| ||||||||||
Sbjct: 23972017 agccggctccaggagctctgccaaaagtggctgcagcctgagatacacagcaaggagcag 23972076
Query: 393 atcctggagctgctggtgctggagcagttcctgaccatcct 433
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 23972077 atcctggagctcctggtgctggagcagttcctgaccatcct 23972117
Score = 113 bits (57), Expect = 2e-22
Identities = 96/109 (88%)
Strand = Plus / Minus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
||||| |||| || ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct: 24276231 agtggttgagtccagagatacacaccaaggagcagatcctggaattgttggtgctggagc 24276172
Query: 418 agttcctgaccatcctgccccaggagctccaggcctgggtgcaggagca 466
|| ||||||| ||||||||| |||| |||||||| ||||||| ||||||
Sbjct: 24276171 agctcctgactatcctgcccgaggaactccaggcttgggtgcgggagca 24276123
Score = 107 bits (54), Expect = 1e-20
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 384 aaggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgccccaggag 443
||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 24027806 aaggagcagattctggatctgctggtgctggagcagttcctatctatcctgcccgaggag 24027865
Query: 444 ctccaggcctgggtgcaggagcactgcccagagagtgctgaagaggccgtcactctcctg 503
||||||| ||||||| ||||| ||| ||||| |||| || ||||| || | | | |||
Sbjct: 24027866 ctccagggctgggtgagggagcgctgtccagaaagtggggaggaggcagtgattttgctg 24027925
Query: 504 gaagatctggagcgagaactggatgaacca 533
|| ||||||||| |||| || |||||||||
Sbjct: 24027926 gaggatctggagagagagctcgatgaacca 24027955
Score = 107 bits (54), Expect = 1e-20
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 367 ggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagcagttcctga 426
|||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24037541 ggcctgagatgcacagcaaggagcagatcctggagctgctggtgctcgagcagttcctga 24037600
Query: 427 ccatcctgcc 436
||||||||||
Sbjct: 24037601 ccatcctgcc 24037610
Score = 103 bits (52), Expect = 2e-19
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 23928062 agtggctgaggccagatttgaacaccaaggagcagatcctggagctgctggtgctggagc 23928121
Query: 418 agttcctgaccatcctgccccaggagct 445
| ||| ||||||||||||| |||||||
Sbjct: 23928122 aattcttgaccatcctgcctgaggagct 23928149
Score = 103 bits (52), Expect = 2e-19
Identities = 88/100 (88%)
Strand = Plus / Minus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
||||||||||||| |||| ||| |||||||| || || || |||||| ||||||||||||
Sbjct: 24152410 agtggctgaggccagagacccataccaaggaacaaattctagagctgttggtgctggagc 24152351
Query: 418 agttcctgaccatcctgccccaggagctccaggcctgggt 457
| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 24152350 aattcctgaccatcctgcctgaggagctccaagcctgggt 24152311
Score = 99.6 bits (50), Expect = 3e-18
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 394 tcctggagctgctggtgctggagcagttcctgaccatcctgccccaggagctccaggcct 453
|||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct: 23729074 tcctggagctgctggtgctgaagcagttcctgaccatcctacccgaggagctccaggcct 23729133
Query: 454 gg 455
||
Sbjct: 23729134 gg 23729135
Score = 99.6 bits (50), Expect = 3e-18
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 394 tcctggagctgctggtgctggagcagttcctgaccatcctgccccaggagctccaggcct 453
|||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct: 23886659 tcctggagctgctggtgctgaagcagttcctgaccatcctacccgaggagctccaggcct 23886718
Query: 454 gg 455
||
Sbjct: 23886719 gg 23886720
Score = 93.7 bits (47), Expect = 2e-16
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 381 accaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgccccag 440
|||||||||||||| || || |||||||||||||||||||||||| |||| ||||| |
Sbjct: 23985432 accaaggagcagatactagacctgctggtgctggagcagttcctgtccattctgcctcca 23985491
Query: 441 gagctccaggcctgggtgcagga 463
||||||||||||||| |||||||
Sbjct: 23985492 gagctccaggcctggatgcagga 23985514
Score = 89.7 bits (45), Expect = 3e-15
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 414 gagcagttcctgaccatcctgccccaggagctccaggcctgggtgcaggagca 466
||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 24422251 gagcagttcctgaccatcctgccccaggagctccaagcctcggtgcaggagca 24422199
>Sscrofa_Chr12
|| Length = 63588571
Score = 155 bits (78), Expect = 6e-35
Identities = 165/194 (85%)
Strand = Plus / Minus
Query: 266 ggagatgttccgccagcgcttcaggcagttcgggtaccatgacacacctgggccccggga 325
|||||| ||||||||||||||||||||| || | ||||| || | ||||| ||||| ||
Sbjct: 53765512 ggagatcttccgccagcgcttcaggcagctctgctaccaggaggctcctggtccccgaga 53765453
Query: 326 ggccctcagccagctccgggtgctctgctgtgagtggctgaggcccgagatccacaccaa 385
|||||| ||| || ||| |||||||| |||||||||||||| |||| ||||||||
Sbjct: 53765452 ggccctgcgccgactaagggcactctgctgcgagtggctgaggcctgagaggcacaccaa 53765393
Query: 386 ggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgccccaggagct 445
|||||||||||||||| | |||||||||||||| |||||||||||||||||| |||||||
Sbjct: 53765392 ggagcagatcctggagttcctggtgctggagcaattcctgaccatcctgcccgaggagct 53765333
Query: 446 ccaggcctgggtgc 459
||| || ||||||
Sbjct: 53765332 tcagtcccgggtgc 53765319
Score = 155 bits (78), Expect = 6e-35
Identities = 165/194 (85%)
Strand = Plus / Plus
Query: 266 ggagatgttccgccagcgcttcaggcagttcgggtaccatgacacacctgggccccggga 325
|||||| ||||||||||||||||||||| || | ||||| || | ||||| ||||| ||
Sbjct: 53901676 ggagatcttccgccagcgcttcaggcagctctgctaccaggaggctcctggtccccgaga 53901735
Query: 326 ggccctcagccagctccgggtgctctgctgtgagtggctgaggcccgagatccacaccaa 385
|||||| ||| || ||| |||||||| |||||||||||||| |||| ||||||||
Sbjct: 53901736 ggccctgcgccgactaagggcactctgctgcgagtggctgaggcctgagaggcacaccaa 53901795
Query: 386 ggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgccccaggagct 445
|||||||||||||||| | |||||||||||||| |||||||||||||||||| |||||||
Sbjct: 53901796 ggagcagatcctggagttcctggtgctggagcaattcctgaccatcctgcccgaggagct 53901855
Query: 446 ccaggcctgggtgc 459
||| || ||||||
Sbjct: 53901856 tcagtcccgggtgc 53901869
Score = 111 bits (56), Expect = 7e-22
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
|||||||| ||||||| | |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 59265980 agtggctgcagcccgagcttcacaccaaggagcagatcctggagatgctgctgctggagc 59265921
Query: 418 agttcctgaccatcctgccc 437
||||||||||||||||||||
Sbjct: 59265920 agttcctgaccatcctgccc 59265901
Score = 89.7 bits (45), Expect = 3e-15
Identities = 87/101 (86%)
Strand = Plus / Plus
Query: 336 cagctccgggtgctctgctgtgagtggctgaggcccgagatccacaccaaggagcagatc 395
|||||||| | ||||||| | ||||||| || |||||||| ||| | ||||| ||||||
Sbjct: 62167025 cagctccgagagctctgccttaagtggctaagacccgagattcactctaaggaacagatc 62167084
Query: 396 ctggagctgctggtgctggagcagttcctgaccatcctgcc 436
|||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 62167085 ctggagctgctgattctggaacagttcctgaccatcctgcc 62167125
>Sscrofa_Chr06
|| Length = 157765593
Score = 149 bits (75), Expect = 3e-33
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 324 gaggccctcagccagctccgggtgctctgctgtgagtggctgaggcccgagatccacacc 383
|||||| |||| |||||| ||| |||||||||| | ||||||||||||||||||| | |
Sbjct: 83841570 gaggccttcagtcagctctgggcgctctgctgtcattggctgaggcccgagatccgcctc 83841511
Query: 384 aaggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgccccaggag 443
|| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 83841510 aaagagcagatcctggagctgctggtgctggagcagttcctgactatcctacccagggag 83841451
Query: 444 ctccaggcctgggtgcagg 462
||||||||||||| ||||
Sbjct: 83841450 gtccaggcctgggtacagg 83841432
Score = 131 bits (66), Expect = 8e-28
Identities = 117/134 (87%)
Strand = Plus / Minus
Query: 312 cctgggccccgggaggccctcagccagctccgggtgctctgctgtgagtggctgaggccc 371
|||||||||||||||||||| ||| |||| || ||| |||| | |||||||||| ||
Sbjct: 111442204 cctgggccccgggaggccctgggccgactccaggagctttgctatcagtggctgagacca 111442145
Query: 372 gagatccacaccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatc 431
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 111442144 gaggtgcacacgaaggagcagatcctggagctgctggtgctggagcagttcctgagcatc 111442085
Query: 432 ctgccccaggagct 445
||||| |||||||
Sbjct: 111442084 ctgcctgaggagct 111442071
Score = 127 bits (64), Expect = 1e-26
Identities = 133/156 (85%)
Strand = Plus / Minus
Query: 275 ccgccagcgcttcaggcagttcgggtaccatgacacacctgggccccgggaggccctcag 334
||||||||| || |||||||| | ||||| || ||||||||||||||||||| |||||
Sbjct: 111648726 ccgccagcggtttaggcagtttgactaccaggagtcacctgggccccgggaggctctcag 111648667
Query: 335 ccagctccgggtgctctgctgtgagtggctgaggcccgagatccacaccaaggagcagat 394
|| ||||| | ||| || || ||||||||||||| ||| | |||| ||| ||||||||
Sbjct: 111648666 ccgtctccgagagctttgttgccagtggctgaggccagaggtgcacagcaaagagcagat 111648607
Query: 395 cctggagctgctggtgctggagcagttcctgaccat 430
||||||||||||||||||||||||||||||| ||||
Sbjct: 111648606 cctggagctgctggtgctggagcagttcctggccat 111648571
Score = 121 bits (61), Expect = 8e-25
Identities = 145/173 (83%)
Strand = Plus / Plus
Query: 273 ttccgccagcgcttcaggcagttcgggtaccatgacacacctgggccccgggaggccctc 332
||||||||||| ||||||||||| || ||| |||| | | |||||||||||||| ||
Sbjct: 111424932 ttccgccagcggttcaggcagtttggttactctgactctgcggggccccgggaggctctg 111424991
Query: 333 agccagctccgggtgctctgctgtgagtggctgaggcccgagatccacaccaaggagcag 392
|||| ||||| | || ||||| |||||||||||| ||| | |||| ||||||||||
Sbjct: 111424992 agccgtctccgagaactttgctgcctgtggctgaggccggaggtgcacagcaaggagcag 111425051
Query: 393 atcctggagctgctggtgctggagcagttcctgaccatcctgccccaggagct 445
|||||||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct: 111425052 atcctggagctgctggtgctggagcagttcttggccatcctgccggaggagct 111425104
Score = 83.8 bits (42), Expect = 2e-13
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 357 gagtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggag 416
||||||||||||||| |||| ||| ||||||| ||||| |||||||||| ||||||||||
Sbjct: 57436450 gagtggctgaggcccaagatgcactccaaggaacagatgctggagctgcaggtgctggag 57436391
Query: 417 cagttcctgaccatcctgccccaggagctccaggcctgggtg 458
| ||||||| || ||||||| || ||||||||||||||
Sbjct: 57436390 ctgttcctgggcacgctgccccccaagatccaggcctgggtg 57436349
Score = 83.8 bits (42), Expect = 2e-13
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 357 gagtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggag 416
||||||||||||||| |||| ||| ||||||| ||||| |||||||||| ||||||||||
Sbjct: 57642743 gagtggctgaggcccaagatgcactccaaggaacagatgctggagctgcaggtgctggag 57642802
Query: 417 cagttcctgaccatcctgccccaggagctccaggcctgggtg 458
| ||||||| || ||||||| || ||||||||||||||
Sbjct: 57642803 ctgttcctgggcacgctgccccccaagatccaggcctgggtg 57642844
Score = 73.8 bits (37), Expect = 2e-10
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 313 ctgggccccgggaggccctcagccagctccgggtgctctgctgtgagtggctgaggcccg 372
|||||||||| |||||||| || ||| |||| ||| ||| | |||||||| |||||
Sbjct: 57507822 ctgggccccgcgaggcccttgcccggctgcgggagctgtgccgccagtggctgcagcccg 57507763
Query: 373 agatccacaccaaggagcagatcctggagctgctggtgctggagcagttcctg 425
|||| || | || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 57507762 agatgtactctaaagagcagatgctggagctgctggtgctggagcagttcctg 57507710
Score = 71.9 bits (36), Expect = 6e-10
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 359 gtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagca 418
|||||||||||| || |||||||||||||||||||| |||| |||||||||||||||
Sbjct: 55715685 gtggctgaggccagatctccacaccaaggagcagatcatggacaggctggtgctggagca 55715626
Query: 419 gttc 422
||||
Sbjct: 55715625 gttc 55715622
Score = 71.9 bits (36), Expect = 6e-10
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 359 gtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagca 418
|||||||||||| || |||||||||||||||||||| |||| |||||||||||||||
Sbjct: 55839190 gtggctgaggccagatctccacaccaaggagcagatcatggacaggctggtgctggagca 55839131
Query: 419 gttc 422
||||
Sbjct: 55839130 gttc 55839127
Score = 71.9 bits (36), Expect = 6e-10
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 359 gtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagca 418
|||||||||||| || |||||||||||||||||||| |||| |||||||||||||||
Sbjct: 55849170 gtggctgaggccagatctccacaccaaggagcagatcatggacaggctggtgctggagca 55849111
Query: 419 gttc 422
||||
Sbjct: 55849110 gttc 55849107
Score = 63.9 bits (32), Expect = 2e-07
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
|||||||| |||| ||| ||| ||||||||||| ||| |||||| || ||||||||||||
Sbjct: 57348356 agtggctg-ggcctgaggtccgcaccaaggagcggatgctggagttggtggtgctggagc 57348414
Query: 418 agttcctg 425
||||||||
Sbjct: 57348415 agttcctg 57348422
Score = 58.0 bits (29), Expect = 1e-05
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
|||||||||||||||| || ||||| ||||||||||| |||| ||||||||| |||||
Sbjct: 74039078 agtggctgaggcccgacattcacacaaaggagcagattgtggaaatgctggtgcaggagc 74039137
Query: 418 a 418
|
Sbjct: 74039138 a 74039138
>Sscrofa_Chr13
|| Length = 218635234
Score = 129 bits (65), Expect = 3e-27
Identities = 128/149 (85%)
Strand = Plus / Minus
Query: 313 ctgggccccgggaggccctcagccagctccgggtgctctgctgtgagtggctgaggcccg 372
||||||| | |||||| || |||| |||||||| ||||||| | |||||||| ||| |
Sbjct: 30527517 ctgggccgcaggaggcactgagccggctccgggagctctgccgctggtggctgatgccag 30527458
Query: 373 agatccacaccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcc 432
| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 30527457 aagtacacaccaaggagcagatcctggagctgctggtgctggagcagttcctgagcatcc 30527398
Query: 433 tgccccaggagctccaggcctgggtgcag 461
|||| |||||||| | |||||||||||
Sbjct: 30527397 tgccaggggagctccggacctgggtgcag 30527369
Score = 81.8 bits (41), Expect = 7e-13
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 380 caccaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgcc 436
|||||||| |||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 30725894 caccaaggctcagatcctggagttgctggtgctggagcagttcctgagcatcctgcc 30725950
Score = 63.9 bits (32), Expect = 2e-07
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 390 cagatcctggagctgctggtgctggagcagttcctgaccatcctgccccaggagctccag 449
|||||||| ||||| |||||||||||||||||| ||| ||||||||| ||| |||| |
Sbjct: 30608654 cagatcctagagctcctggtgctggagcagttcttgagcatcctgccaggggaactccgg 30608713
Query: 450 gcctgggtgcag 461
|||||||||||
Sbjct: 30608714 acctgggtgcag 30608725
>Sscrofa_Chr02
|| Length = 162569375
Score = 111 bits (56), Expect = 7e-22
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 360 tggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagcag 419
||||||||||| || | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 57953421 tggctgaggcctgaaaggcataccaaggagcagatcctggagctgctggtgctggagcag 57953480
Query: 420 ttcctgaccatcctgccccaggagctccaggcctgggtgc 459
|| ||| | |||||||||| |||| |||||| ||||||||
Sbjct: 57953481 tttctggctatcctgccccgggagatccagggctgggtgc 57953520
>Sscrofa_ChrX
|| Length = 144288218
Score = 87.7 bits (44), Expect = 1e-14
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
||||||| ||||| ||||||||| | || ||||||||| |||| ||||||||||| ||||
Sbjct: 126806454 agtggctaaggccagagatccactcaaaagagcagatcttggaactgctggtgctagagc 126806513
Query: 418 agttcctgaccatcctgccc 437
||||||||||||| ||||||
Sbjct: 126806514 agttcctgaccattctgccc 126806533
>Sscrofa_Chr17
|| Length = 69701581
Score = 63.9 bits (32), Expect = 2e-07
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 358 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 417
|||||||| ||||||| |||| ||| |||||||||||| ||||| ||||||||| ||||
Sbjct: 44651140 agtggctgcggcccgacatccgcacgaaggagcagatcgtggagatgctggtgcaagagc 44651081
Query: 418 agttcctgaccatcctgccc 437
|| | || |||||||||||
Sbjct: 44651080 agctgctcgccatcctgccc 44651061
>Sscrofa_Chr09
|| Length = 153670197
Score = 63.9 bits (32), Expect = 2e-07
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 360 tggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagcag 419
|||||||| || ||||| || || ||| |||||||| ||||||| ||||||||||||||
Sbjct: 3065474 tggctgagaccagagattcatacaaagaagcagatcttggagctcttggtgctggagcag 3065533
Query: 420 ttcctgac 427
||||||||
Sbjct: 3065534 ttcctgac 3065541
Score = 63.9 bits (32), Expect = 2e-07
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 360 tggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagcag 419
|||||||| || ||||| || || ||| |||||||| ||||||| ||||||||||||||
Sbjct: 3182718 tggctgagaccagagattcatacaaagaagcagatcttggagctcttggtgctggagcag 3182659
Query: 420 ttcctgac 427
||||||||
Sbjct: 3182658 ttcctgac 3182651
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,198,265
Number of extensions: 380
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 55
Length of query: 1004
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 983
Effective length of database: 2,808,413,156
Effective search space: 2760670132348
Effective search space used: 2760670132348
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)