Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003730
(920 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776313.1| ADM [Bos taurus]. 325 3e-89
>ref|NP_776313.1| ADM [Bos taurus].
Length = 188
Score = 325 bits (833), Expect = 3e-89
Identities = 163/186 (87%), Positives = 171/186 (91%), Gaps = 1/186 (0%)
Frame = +3
Query: 174 MKLVPVALMYLGSLAFLGADTARLDVAAEFRKKWNKWALSRGKRELRLSSSYPTGIADLK 353
MKLVPVAL+YLGSLAFLG DTARLDVAAEFRKKWNKWALSRGKRELR SSSYPTG+AD+K
Sbjct: 1 MKLVPVALLYLGSLAFLGVDTARLDVAAEFRKKWNKWALSRGKRELRESSSYPTGLADVK 60
Query: 354 AGPAQTVIRPQDVKGSSRSPQASIPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL 533
AGP QT+IRPQDVKG+SRSPQAS PDAARIRVKRYRQS+NNFQGLRSFGCRFGTCTVQKL
Sbjct: 61 AGPVQTLIRPQDVKGASRSPQASSPDAARIRVKRYRQSLNNFQGLRSFGCRFGTCTVQKL 120
Query: 534 AHQIYQFTDKDKDGVAPRSKISPQGYGRRRRRSLPEASLGRT-LRSQEPQAHGAPASPAH 710
AHQIY FTDKDKDG APRSKISPQGYGRRRRRSLPEA LGRT L+ EP+ GAP S H
Sbjct: 121 AHQIYHFTDKDKDGSAPRSKISPQGYGRRRRRSLPEAGLGRTLLQPPEPKLRGAPDSRVH 180
Query: 711 QVLATL 728
QVLATL
Sbjct: 181 QVLATL 186
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,049,754
Number of extensions: 1272369
Number of successful extensions: 9176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9043
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003730
(920 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003183.1| ADM precursor [Canis lupus familiaris]. 318 3e-87
>ref|NP_001003183.1| ADM precursor [Canis lupus familiaris].
Length = 188
Score = 318 bits (816), Expect = 3e-87
Identities = 158/188 (84%), Positives = 171/188 (90%)
Frame = +3
Query: 174 MKLVPVALMYLGSLAFLGADTARLDVAAEFRKKWNKWALSRGKRELRLSSSYPTGIADLK 353
MKLVPVAL+YLGSLAFLGADTARLDVA+EFRKKWNKWA+SRGKRELR+SSSYPTG+A++K
Sbjct: 1 MKLVPVALLYLGSLAFLGADTARLDVASEFRKKWNKWAVSRGKRELRVSSSYPTGLAEVK 60
Query: 354 AGPAQTVIRPQDVKGSSRSPQASIPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL 533
AGPAQT+IR QDVKG+SR+PQ S PDAARIRVKRYRQSMNNFQG RSFGCRFGTCTVQKL
Sbjct: 61 AGPAQTLIRTQDVKGASRNPQTSGPDAARIRVKRYRQSMNNFQGPRSFGCRFGTCTVQKL 120
Query: 534 AHQIYQFTDKDKDGVAPRSKISPQGYGRRRRRSLPEASLGRTLRSQEPQAHGAPASPAHQ 713
AHQIYQFTD DKDGVAPRSKISPQGYGRRRRRSLPE L RTL EP+ GAPA AHQ
Sbjct: 121 AHQIYQFTDNDKDGVAPRSKISPQGYGRRRRRSLPEPGLRRTLLFPEPRPGGAPAPRAHQ 180
Query: 714 VLATLFRI 737
VLA L ++
Sbjct: 181 VLANLLKM 188
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,630,720
Number of extensions: 1305676
Number of successful extensions: 9251
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9121
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003730
(920 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001115.1| ADM precursor [Homo sapiens]. 324 6e-89
>ref|NP_001115.1| ADM precursor [Homo sapiens].
Length = 185
Score = 324 bits (831), Expect = 6e-89
Identities = 159/178 (89%), Positives = 169/178 (94%)
Frame = +3
Query: 174 MKLVPVALMYLGSLAFLGADTARLDVAAEFRKKWNKWALSRGKRELRLSSSYPTGIADLK 353
MKLV VALMYLGSLAFLGADTARLDVA+EFRKKWNKWALSRGKRELR+SSSYPTG+AD+K
Sbjct: 1 MKLVSVALMYLGSLAFLGADTARLDVASEFRKKWNKWALSRGKRELRMSSSYPTGLADVK 60
Query: 354 AGPAQTVIRPQDVKGSSRSPQASIPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL 533
AGPAQT+IRPQD+KG+SRSP+ S PDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL
Sbjct: 61 AGPAQTLIRPQDMKGASRSPEDSSPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL 120
Query: 534 AHQIYQFTDKDKDGVAPRSKISPQGYGRRRRRSLPEASLGRTLRSQEPQAHGAPASPA 707
AHQIYQFTDKDKD VAPRSKISPQGYGRRRRRSLPEA GRTL S +PQAHGAPA P+
Sbjct: 121 AHQIYQFTDKDKDNVAPRSKISPQGYGRRRRRSLPEAGPGRTLVSSKPQAHGAPAPPS 178
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,659,880
Number of extensions: 1265155
Number of successful extensions: 8641
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8526
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003730
(920 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033757.1| ADM precursor [Mus musculus]. 229 2e-60
>ref|NP_033757.1| ADM precursor [Mus musculus].
Length = 184
Score = 229 bits (585), Expect = 2e-60
Identities = 124/188 (65%), Positives = 139/188 (73%)
Frame = +3
Query: 174 MKLVPVALMYLGSLAFLGADTARLDVAAEFRKKWNKWALSRGKRELRLSSSYPTGIADLK 353
MKLV + LM LGSLAFLGADTA D ++FRKKWNKWALSRGKREL+ SSSYPTG+AD
Sbjct: 1 MKLVSITLMLLGSLAFLGADTAGPDTPSQFRKKWNKWALSRGKRELQASSSYPTGLADET 60
Query: 354 AGPAQTVIRPQDVKGSSRSPQASIPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL 533
P QT+ D + ++ QAS A IRVKRYRQSMN QG RS GCRFGTCT QKL
Sbjct: 61 TVPTQTLDPFLDEQNTTGPLQASNQSEAHIRVKRYRQSMN--QGSRSNGCRFGTCTFQKL 118
Query: 534 AHQIYQFTDKDKDGVAPRSKISPQGYGRRRRRSLPEASLGRTLRSQEPQAHGAPASPAHQ 713
AHQIYQ TDKDKDG+APR+KISPQGYGRRRRRSL E RT+ S + Q H AP AH
Sbjct: 119 AHQIYQLTDKDKDGMAPRNKISPQGYGRRRRRSLLEVLRSRTVESSQEQTHTAPGPWAH- 177
Query: 714 VLATLFRI 737
++ LFRI
Sbjct: 178 -ISRLFRI 184
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,194,659
Number of extensions: 1029955
Number of successful extensions: 6342
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6241
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003730
(920 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999272.1| ADM precursor [Sus scrofa]. 375 e-104
>ref|NP_999272.1| ADM precursor [Sus scrofa].
Length = 188
Score = 375 bits (964), Expect = e-104
Identities = 188/188 (100%), Positives = 188/188 (100%)
Frame = +3
Query: 174 MKLVPVALMYLGSLAFLGADTARLDVAAEFRKKWNKWALSRGKRELRLSSSYPTGIADLK 353
MKLVPVALMYLGSLAFLGADTARLDVAAEFRKKWNKWALSRGKRELRLSSSYPTGIADLK
Sbjct: 1 MKLVPVALMYLGSLAFLGADTARLDVAAEFRKKWNKWALSRGKRELRLSSSYPTGIADLK 60
Query: 354 AGPAQTVIRPQDVKGSSRSPQASIPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL 533
AGPAQTVIRPQDVKGSSRSPQASIPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL
Sbjct: 61 AGPAQTVIRPQDVKGSSRSPQASIPDAARIRVKRYRQSMNNFQGLRSFGCRFGTCTVQKL 120
Query: 534 AHQIYQFTDKDKDGVAPRSKISPQGYGRRRRRSLPEASLGRTLRSQEPQAHGAPASPAHQ 713
AHQIYQFTDKDKDGVAPRSKISPQGYGRRRRRSLPEASLGRTLRSQEPQAHGAPASPAHQ
Sbjct: 121 AHQIYQFTDKDKDGVAPRSKISPQGYGRRRRRSLPEASLGRTLRSQEPQAHGAPASPAHQ 180
Query: 714 VLATLFRI 737
VLATLFRI
Sbjct: 181 VLATLFRI 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,271,195
Number of extensions: 824287
Number of successful extensions: 6269
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6150
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003730
(920 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 969 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 969 bits (489), Expect = 0.0
Identities = 495/497 (99%)
Strand = Plus / Minus
Query: 418 ccagcattccggatgcagcccgcatccgagtcaagcgctaccgccagagtatgaacaact 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577320 ccagcattccggatgcagcccgcatccgagtcaagcgctaccgccagagtatgaacaact 52577261
Query: 478 tccagggcctgcggagcttcggctgtcgctttgggacgtgcaccgtgcagaagctggcgc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577260 tccagggcctgcggagcttcggctgtcgctttgggacgtgcaccgtgcagaagctggcgc 52577201
Query: 538 accagatctaccagttcacggacaaagacaaggacggcgtcgccccccggagcaagatca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577200 accagatctaccagttcacggacaaagacaaggacggcgtcgccccccggagcaagatca 52577141
Query: 598 gcccccagggctacggccgccggcgccgacgctctctgcccgaagccagcctgggccgga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577140 gcccccagggctacggccgccggcgccgacgctctctgcccgaagccagcctgggccgga 52577081
Query: 658 ctctgaggtcccaggagccacaggcgcacggggccccggcctccccggcgcatcaagtgc 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577080 ctctgaggtcccaggagccacaggcgcacggggccccggcctccccggcgcatcaagtgc 52577021
Query: 718 tcgccactctctttaggatttaggcgcctactgtggcagcagcgaacagtcgcgcatgca 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577020 tcgccactctctttaggatttaggcgcctactgtggcagcagcgaacagtcgcgcatgca 52576961
Query: 778 tcatgccggcgcttcctggggcggggggcttcccggagccgagcccctcagcggctgggg 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52576960 tcatgccggcgcttcctggggcggggggcttcccggagccgagcccctcagcggctgggg 52576901
Query: 838 cccgggcaaagacagcattgagagaccgagagcccgggaggcacagaccagcggcgagcc 897
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 52576900 cccgggcagagacagcattgagagaccgagagtccgggaggcacagaccagcggcgagcc 52576841
Query: 898 ctgcattttcaggaacc 914
|||||||||||||||||
Sbjct: 52576840 ctgcattttcaggaacc 52576824
Score = 303 bits (153), Expect = 9e-80
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 1 ctcagtggtttcttggtgacactgaggcggaacagctcgagccttgccacctctagtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52578544 ctcagtggtttcttggtgacactgaggcggaacagctcgagccttgccacctctagtttc 52578485
Query: 61 ttaccacagcttggacgtcggggttttgccactgccagagggacgtctcagacttcatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52578484 ttaccacagcttggacgtcggggttttgccactgccagagggacgtctcagacttcatct 52578425
Query: 121 tcccaaatcttggcagatcacccccttagcagg 153
|||||||||||||||||||||||||||||||||
Sbjct: 52578424 tcccaaatcttggcagatcacccccttagcagg 52578392
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 272 atggaataagtgggctctaagtcgtggaaaaagagaacttcggctgtccagcagctaccc 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577672 atggaataagtgggctctaagtcgtggaaaaagagaacttcggctgtccagcagctaccc 52577613
Query: 332 caccgggatcgccgacttgaaggccgggcctgcccagactgtcattcggccccaggatgt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577612 caccgggatcgccgacttgaaggccgggcctgcccagactgtcattcggccccaggatgt 52577553
Query: 392 gaagggctcctctcgcagcccccaggccag 421
||||||||||||||||||||||||||||||
Sbjct: 52577552 gaagggctcctctcgcagcccccaggccag 52577523
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 150 cagggtctgcacatctcagccgggatgaagctggttcccgtagccctcatgtacctgggc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577950 cagggtctgcacatctcagccgggatgaagctggttcccgtagccctcatgtacctgggc 52577891
Query: 210 tcgctcgccttcctgggcgctgacacagctcggctcgacgtggcggcagagttccgaaag 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52577890 tcgctcgccttcctgggcgctgacacagctcggctcgacgtggcggcagagttccgaaag 52577831
Query: 270 aa 271
||
Sbjct: 52577830 aa 52577829
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,497,422
Number of extensions: 104
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 4
Length of query: 920
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 899
Effective length of database: 2,808,413,156
Effective search space: 2524763427244
Effective search space used: 2524763427244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)