Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003737
(2012 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180055.1| transcription elongation factor SPT6 [Bos ta... 1238 0.0
Alignment gi|XP_002695794.1| PREDICTED: suppressor of Ty 6 homolog [Bos t... 1238 0.0
>ref|NP_001180055.1| transcription elongation factor SPT6 [Bos taurus].
Length = 1726
Score = 1238 bits (3203), Expect = 0.0
Identities = 605/648 (93%), Positives = 608/648 (93%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 928 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 987
Query: 183 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 362
YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD
Sbjct: 988 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 1047
Query: 363 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAF 542
SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAF
Sbjct: 1048 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAF 1107
Query: 543 AEELERQGYGDKHITLYDIPAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 722
AEELERQGYGDKHITLYDI AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI
Sbjct: 1108 AEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 1167
Query: 723 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 902
ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG
Sbjct: 1168 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 1227
Query: 903 VKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLM 1082
VKTRLDNGVTGFIPTKFLSD GMTVHCRIMKIDIEKFSADLTCRTSDLM
Sbjct: 1228 VKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLM 1287
Query: 1083 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1262
DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM
Sbjct: 1288 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1347
Query: 1263 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1442
ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1407
Query: 1443 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKE 1622
LDEIVARYVQPMASFARDLLNHKYYQDCSGGDR PTFIPYFICACKE
Sbjct: 1408 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKE 1467
Query: 1623 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXX 1802
LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQ+FPTVNGLFRWFKDHYQDPVPGI
Sbjct: 1468 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQVFPTVNGLFRWFKDHYQDPVPGITPSSS 1527
Query: 1803 XXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
ASINATPANINLADLTRAVNALPQNMTSQMF+AIAAVTG G+
Sbjct: 1528 SRTRTPASINATPANINLADLTRAVNALPQNMTSQMFNAIAAVTGQGQ 1575
>ref|XP_002695794.1| PREDICTED: suppressor of Ty 6 homolog [Bos taurus].
Length = 1726
Score = 1238 bits (3203), Expect = 0.0
Identities = 605/648 (93%), Positives = 608/648 (93%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 928 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 987
Query: 183 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 362
YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD
Sbjct: 988 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 1047
Query: 363 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAF 542
SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAF
Sbjct: 1048 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAF 1107
Query: 543 AEELERQGYGDKHITLYDIPAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 722
AEELERQGYGDKHITLYDI AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI
Sbjct: 1108 AEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 1167
Query: 723 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 902
ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG
Sbjct: 1168 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 1227
Query: 903 VKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLM 1082
VKTRLDNGVTGFIPTKFLSD GMTVHCRIMKIDIEKFSADLTCRTSDLM
Sbjct: 1228 VKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLM 1287
Query: 1083 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1262
DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM
Sbjct: 1288 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1347
Query: 1263 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1442
ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1407
Query: 1443 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKE 1622
LDEIVARYVQPMASFARDLLNHKYYQDCSGGDR PTFIPYFICACKE
Sbjct: 1408 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKE 1467
Query: 1623 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXX 1802
LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQ+FPTVNGLFRWFKDHYQDPVPGI
Sbjct: 1468 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQVFPTVNGLFRWFKDHYQDPVPGITPSSS 1527
Query: 1803 XXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
ASINATPANINLADLTRAVNALPQNMTSQMF+AIAAVTG G+
Sbjct: 1528 SRTRTPASINATPANINLADLTRAVNALPQNMTSQMFNAIAAVTGQGQ 1575
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 77,635,242
Number of extensions: 2217540
Number of successful extensions: 6699
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6695
Number of HSP's successfully gapped: 2
Length of query: 670
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 561
Effective length of database: 14,074,782
Effective search space: 7895952702
Effective search space used: 7895952702
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003737
(2012 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_868225.1| PREDICTED: similar to suppressor of Ty 6 homolo... 1239 0.0
Alignment gi|XP_868221.1| PREDICTED: similar to suppressor of Ty 6 homolo... 1239 0.0
Alignment gi|XP_537747.2| PREDICTED: similar to suppressor of Ty 6 homolo... 1239 0.0
Alignment gi|XP_868217.1| PREDICTED: similar to suppressor of Ty 6 homolo... 1215 0.0
Alignment gi|XP_868212.1| PREDICTED: similar to suppressor of Ty 6 homolo... 1147 0.0
Alignment gi|XP_868206.1| PREDICTED: similar to suppressor of Ty 6 homolo... 1103 0.0
Alignment gi|XP_868195.1| PREDICTED: similar to suppressor of Ty 6 homolo... 951 0.0
Alignment gi|XP_868203.1| PREDICTED: similar to suppressor of Ty 6 homolo... 791 0.0
>ref|XP_868225.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 8 [Canis
familiaris].
Length = 1719
Score = 1239 bits (3207), Expect = 0.0
Identities = 607/648 (93%), Positives = 608/648 (93%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 921 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 980
Query: 183 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 362
YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD
Sbjct: 981 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 1040
Query: 363 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAF 542
SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAF
Sbjct: 1041 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAF 1100
Query: 543 AEELERQGYGDKHITLYDIPAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 722
AEELERQGYGDKHITLYDI AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI
Sbjct: 1101 AEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 1160
Query: 723 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 902
ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG
Sbjct: 1161 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 1220
Query: 903 VKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLM 1082
VKTRLDNGVTGFIPTKFLSD GMTVHCRIMKIDIEKFSADLTCRTSDLM
Sbjct: 1221 VKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLM 1280
Query: 1083 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1262
DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM
Sbjct: 1281 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1340
Query: 1263 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1442
ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED
Sbjct: 1341 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1400
Query: 1443 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKE 1622
LDEIVARYVQPMASFARDLLNHKYYQDCSGGDR PTFIPYFICACKE
Sbjct: 1401 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKE 1460
Query: 1623 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXX 1802
LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI
Sbjct: 1461 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSS 1520
Query: 1803 XXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
ASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTG G+
Sbjct: 1521 SRTRTPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQ 1568
>ref|XP_868221.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 7 [Canis
familiaris].
Length = 1708
Score = 1239 bits (3207), Expect = 0.0
Identities = 607/648 (93%), Positives = 608/648 (93%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 910 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 969
Query: 183 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 362
YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD
Sbjct: 970 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 1029
Query: 363 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAF 542
SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAF
Sbjct: 1030 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAF 1089
Query: 543 AEELERQGYGDKHITLYDIPAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 722
AEELERQGYGDKHITLYDI AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI
Sbjct: 1090 AEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 1149
Query: 723 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 902
ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG
Sbjct: 1150 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 1209
Query: 903 VKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLM 1082
VKTRLDNGVTGFIPTKFLSD GMTVHCRIMKIDIEKFSADLTCRTSDLM
Sbjct: 1210 VKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLM 1269
Query: 1083 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1262
DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM
Sbjct: 1270 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1329
Query: 1263 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1442
ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED
Sbjct: 1330 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1389
Query: 1443 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKE 1622
LDEIVARYVQPMASFARDLLNHKYYQDCSGGDR PTFIPYFICACKE
Sbjct: 1390 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKE 1449
Query: 1623 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXX 1802
LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI
Sbjct: 1450 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSS 1509
Query: 1803 XXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
ASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTG G+
Sbjct: 1510 SRTRTPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQ 1557
>ref|XP_537747.2| PREDICTED: similar to suppressor of Ty 6 homolog isoform 1 [Canis
familiaris].
Length = 1726
Score = 1239 bits (3207), Expect = 0.0
Identities = 607/648 (93%), Positives = 608/648 (93%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 928 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 987
Query: 183 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 362
YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD
Sbjct: 988 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 1047
Query: 363 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAF 542
SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAF
Sbjct: 1048 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAF 1107
Query: 543 AEELERQGYGDKHITLYDIPAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 722
AEELERQGYGDKHITLYDI AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI
Sbjct: 1108 AEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 1167
Query: 723 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 902
ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG
Sbjct: 1168 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 1227
Query: 903 VKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLM 1082
VKTRLDNGVTGFIPTKFLSD GMTVHCRIMKIDIEKFSADLTCRTSDLM
Sbjct: 1228 VKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLM 1287
Query: 1083 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1262
DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM
Sbjct: 1288 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1347
Query: 1263 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1442
ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1407
Query: 1443 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKE 1622
LDEIVARYVQPMASFARDLLNHKYYQDCSGGDR PTFIPYFICACKE
Sbjct: 1408 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKE 1467
Query: 1623 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXX 1802
LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI
Sbjct: 1468 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSS 1527
Query: 1803 XXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
ASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTG G+
Sbjct: 1528 SRTRTPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQ 1575
>ref|XP_868217.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 6 [Canis
familiaris].
Length = 1767
Score = 1215 bits (3144), Expect = 0.0
Identities = 607/689 (88%), Positives = 608/689 (88%), Gaps = 41/689 (5%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 928 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 987
Query: 183 YVCGLGPRKGTHLLK-------ILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTA 341
YVCGLGPRKGTHLLK ILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTA
Sbjct: 988 YVCGLGPRKGTHLLKVGLVRVQILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTA 1047
Query: 342 SLGD----------------------------------STDSYIEVLDGSRVHPETYEWA 419
SLGD STDSYIEVLDGSRVHPETYEWA
Sbjct: 1048 SLGDRLRSVNTNMFSYYHLPWLGKASCFISLPLFCLAFSTDSYIEVLDGSRVHPETYEWA 1107
Query: 420 RKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAFAEELERQGYGDKHITLYDI 599
RKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAFAEELERQGYGDKHITLYDI
Sbjct: 1108 RKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDI 1167
Query: 600 PAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQ 779
AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQ
Sbjct: 1168 RAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQ 1227
Query: 780 AIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLS 959
AIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLS
Sbjct: 1228 AIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLS 1287
Query: 960 DXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAE 1139
D GMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAE
Sbjct: 1288 DKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAE 1347
Query: 1140 AADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENH 1319
AADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENH
Sbjct: 1348 AADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENH 1407
Query: 1320 LTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDL 1499
LTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDL
Sbjct: 1408 LTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDL 1467
Query: 1500 LNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKELPGKFLLGYQPRGKPRIEY 1679
LNHKYYQDCSGGDR PTFIPYFICACKELPGKFLLGYQPRGKPRIEY
Sbjct: 1468 LNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEY 1527
Query: 1680 VTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXXXXXXXXASINATPANINLA 1859
VTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI ASINATPANINLA
Sbjct: 1528 VTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLA 1587
Query: 1860 DLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
DLTRAVNALPQNMTSQMFSAIAAVTG G+
Sbjct: 1588 DLTRAVNALPQNMTSQMFSAIAAVTGQGQ 1616
>ref|XP_868212.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 5 [Canis
familiaris].
Length = 1679
Score = 1147 bits (2966), Expect = 0.0
Identities = 572/648 (88%), Positives = 573/648 (88%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 928 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 987
Query: 183 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 362
YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD
Sbjct: 988 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 1047
Query: 363 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAF 542
SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAF
Sbjct: 1048 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAF 1107
Query: 543 AEELERQGYGDKHITLYDIPAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 722
AEELERQGYGDKHITLYDI AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI
Sbjct: 1108 AEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 1167
Query: 723 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 902
ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEV
Sbjct: 1168 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEV--------------- 1212
Query: 903 VKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLM 1082
GMTVHCRIMKIDIEKFSADLTCRTSDLM
Sbjct: 1213 --------------------------------GMTVHCRIMKIDIEKFSADLTCRTSDLM 1240
Query: 1083 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1262
DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM
Sbjct: 1241 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1300
Query: 1263 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1442
ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED
Sbjct: 1301 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1360
Query: 1443 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKE 1622
LDEIVARYVQPMASFARDLLNHKYYQDCSGGDR PTFIPYFICACKE
Sbjct: 1361 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKE 1420
Query: 1623 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXX 1802
LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI
Sbjct: 1421 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSS 1480
Query: 1803 XXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
ASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTG G+
Sbjct: 1481 SRTRTPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQ 1528
>ref|XP_868206.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 4 [Canis
familiaris].
Length = 1669
Score = 1103 bits (2853), Expect = 0.0
Identities = 555/648 (85%), Positives = 557/648 (85%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 920 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 979
Query: 183 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 362
YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD
Sbjct: 980 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 1039
Query: 363 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAF 542
SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAF
Sbjct: 1040 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAF 1099
Query: 543 AEELERQGYGDKHITLYDIPAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 722
AEELERQGYGDKHITLYDI AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGK
Sbjct: 1100 AEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKFW 1159
Query: 723 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 902
+C GSCPGQAIG
Sbjct: 1160 VC-------------------------------------------------GSCPGQAIG 1170
Query: 903 VKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLM 1082
VKTRLDNGVTGFIPTKFLSD GMTVHCRIMKIDIEKFSADLTCRTSDLM
Sbjct: 1171 VKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLM 1230
Query: 1083 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1262
DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM
Sbjct: 1231 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1290
Query: 1263 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1442
ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED
Sbjct: 1291 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1350
Query: 1443 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKE 1622
LDEIVARYVQPMASFARDLLNHKYYQDCSGGDR PTFIPYFICACKE
Sbjct: 1351 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKE 1410
Query: 1623 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXX 1802
LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI
Sbjct: 1411 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSS 1470
Query: 1803 XXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
ASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTG G+
Sbjct: 1471 SRTRTPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQ 1518
>ref|XP_868195.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 2 [Canis
familiaris].
Length = 658
Score = 951 bits (2459), Expect(2) = 0.0
Identities = 466/507 (91%), Positives = 467/507 (92%)
Frame = +3
Query: 426 MAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAFAEELERQGYGDKHITLYDIPA 605
MAVDALEYDESAEDANPAGALEEILENPERL DLDLDAFAEELERQGYGDKHITLYDI A
Sbjct: 1 MAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRA 60
Query: 606 ELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAI 785
ELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAI
Sbjct: 61 ELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAI 120
Query: 786 RNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDX 965
RNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSD
Sbjct: 121 RNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDK 180
Query: 966 XXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAA 1145
GMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAA
Sbjct: 181 VVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAA 240
Query: 1146 DHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLT 1325
DHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLT
Sbjct: 241 DHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLT 300
Query: 1326 VTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLN 1505
VTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLN
Sbjct: 301 VTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLN 360
Query: 1506 HKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVT 1685
HKYYQDCSGGDR PTFIPYFICACKELPGKFLLGYQPRGKPRIEYVT
Sbjct: 361 HKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVT 420
Query: 1686 VTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXXXXXXXXASINATPANINLADL 1865
VTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI ASINATPANINLADL
Sbjct: 421 VTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADL 480
Query: 1866 TRAVNALPQNMTSQMFSAIAAVTGPGK 1946
TRAVNALPQNMTSQMFSAIAAVTG G+
Sbjct: 481 TRAVNALPQNMTSQMFSAIAAVTGQGQ 507
Score = 24.3 bits (51), Expect(2) = 0.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 1934 GPRQNXYATPAQWA 1975
G QN ATPAQWA
Sbjct: 504 GQGQNPNATPAQWA 517
>ref|XP_868203.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 3 [Canis
familiaris].
Length = 575
Score = 791 bits (2044), Expect(2) = 0.0
Identities = 385/424 (90%), Positives = 386/424 (91%)
Frame = +3
Query: 675 MLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSE 854
MLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSE
Sbjct: 1 MLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSE 60
Query: 855 VWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKID 1034
VWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSD GMTVHCRIMKID
Sbjct: 61 VWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKID 120
Query: 1035 IEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIA 1214
IEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIA
Sbjct: 121 IEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIA 180
Query: 1215 HPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENA 1394
HPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENA
Sbjct: 181 HPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENA 240
Query: 1395 FSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXX 1574
FSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDR
Sbjct: 241 FSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTK 300
Query: 1575 XXXPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWF 1754
PTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWF
Sbjct: 301 KEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWF 360
Query: 1755 KDHYQDPVPGIXXXXXXXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVT 1934
KDHYQDPVPGI ASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVT
Sbjct: 361 KDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVT 420
Query: 1935 GPGK 1946
G G+
Sbjct: 421 GQGQ 424
Score = 24.3 bits (51), Expect(2) = 0.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 1934 GPRQNXYATPAQWA 1975
G QN ATPAQWA
Sbjct: 421 GQGQNPNATPAQWA 434
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,818,715
Number of extensions: 2275005
Number of successful extensions: 7005
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7002
Number of HSP's successfully gapped: 16
Length of query: 670
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 561
Effective length of database: 15,240,880
Effective search space: 8550133680
Effective search space used: 8550133680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003737
(2012 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003161.2| transcription elongation factor SPT6 [Homo sapi... 1239 0.0
>ref|NP_003161.2| transcription elongation factor SPT6 [Homo sapiens].
Length = 1726
Score = 1239 bits (3207), Expect = 0.0
Identities = 607/648 (93%), Positives = 608/648 (93%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 928 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 987
Query: 183 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 362
YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD
Sbjct: 988 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 1047
Query: 363 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAF 542
SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAF
Sbjct: 1048 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAF 1107
Query: 543 AEELERQGYGDKHITLYDIPAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 722
AEELERQGYGDKHITLYDI AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI
Sbjct: 1108 AEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 1167
Query: 723 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 902
ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG
Sbjct: 1168 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 1227
Query: 903 VKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLM 1082
VKTRLDNGVTGFIPTKFLSD GMTVHCRIMKIDIEKFSADLTCRTSDLM
Sbjct: 1228 VKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLM 1287
Query: 1083 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1262
DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM
Sbjct: 1288 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1347
Query: 1263 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1442
ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1407
Query: 1443 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKE 1622
LDEIVARYVQPMASFARDLLNHKYYQDCSGGDR PTFIPYFICACKE
Sbjct: 1408 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKE 1467
Query: 1623 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXX 1802
LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI
Sbjct: 1468 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSS 1527
Query: 1803 XXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
ASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTG G+
Sbjct: 1528 SRTRTPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQ 1575
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 79,547,062
Number of extensions: 2256275
Number of successful extensions: 6844
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6831
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 561
Effective length of database: 14,704,088
Effective search space: 8248993368
Effective search space used: 8248993368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003737
(2012 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033323.2| transcription elongation factor SPT6 [Mus muscu... 1236 0.0
>ref|NP_033323.2| transcription elongation factor SPT6 [Mus musculus].
Length = 1726
Score = 1236 bits (3199), Expect = 0.0
Identities = 606/648 (93%), Positives = 607/648 (93%)
Frame = +3
Query: 3 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 182
AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ
Sbjct: 928 AQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQ 987
Query: 183 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 362
YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD
Sbjct: 988 YVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTD 1047
Query: 363 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLXDLDLDAF 542
SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERL DLDLDAF
Sbjct: 1048 SYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAF 1107
Query: 543 AEELERQGYGDKHITLYDIPAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 722
AEELERQGYGDKHITLYDI AELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI
Sbjct: 1108 AEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLI 1167
Query: 723 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 902
ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG
Sbjct: 1168 ICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIG 1227
Query: 903 VKTRLDNGVTGFIPTKFLSDXXXXXXXXXXXXGMTVHCRIMKIDIEKFSADLTCRTSDLM 1082
VKTRLDNGVTGFIPTKFLSD GMTVHCRIMKIDIEKFSADLTCRTSDLM
Sbjct: 1228 VKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLM 1287
Query: 1083 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1262
DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM
Sbjct: 1288 DRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMM 1347
Query: 1263 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFED 1442
ETMDQGDVIIRPSSKGENHLTVTWKVS GIYQHVDVREEGKENAFSLGATLWINSEEFED
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSAGIYQHVDVREEGKENAFSLGATLWINSEEFED 1407
Query: 1443 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRXXXXXXXXXXXXXXPTFIPYFICACKE 1622
LDEIVARYVQPMASFARDLLNHKYYQDCSGGDR PTFIPYFICACKE
Sbjct: 1408 LDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKE 1467
Query: 1623 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGIXXXXX 1802
LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI
Sbjct: 1468 LPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSS 1527
Query: 1803 XXXXXXASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGPGK 1946
ASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTG G+
Sbjct: 1528 NRTRTPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQ 1575
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 67,388,030
Number of extensions: 1887188
Number of successful extensions: 5806
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5799
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 562
Effective length of database: 12,373,671
Effective search space: 6954003102
Effective search space used: 6954003102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003737
(2012 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 50,016,323
Number of extensions: 1423523
Number of successful extensions: 4436
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4432
Number of HSP's successfully gapped: 0
Length of query: 670
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 564
Effective length of database: 8,704,850
Effective search space: 4909535400
Effective search space used: 4909535400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003737
(2012 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 476 e-131
gb|GL895804.2| Sus scrofa unplaced genomic scaffold ChrUScaf3688 339 4e-90
>Sscrofa_Chr12
|| Length = 63588571
Score = 476 bits (240), Expect = e-131
Identities = 240/240 (100%)
Strand = Plus / Plus
Query: 1192 catatatcaagcgagtgattgcacacccgtccttccataatataaactttaagcaagcgg 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920121 catatatcaagcgagtgattgcacacccgtccttccataatataaactttaagcaagcgg 46920180
Query: 1252 aaaagatgatggagaccatggaccagggagacgtgatcatccgaccaagcagcaagggtg 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920181 aaaagatgatggagaccatggaccagggagacgtgatcatccgaccaagcagcaagggtg 46920240
Query: 1312 aaaatcacctgacagtgacctggaaagtcagtgacggcatctatcagcacgtggacgtgc 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920241 aaaatcacctgacagtgacctggaaagtcagtgacggcatctatcagcacgtggacgtgc 46920300
Query: 1372 gggaagagggcaaggaaaacgccttcagcctgggagccaccctgtggatcaacagtgagg 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920301 gggaagagggcaaggaaaacgccttcagcctgggagccaccctgtggatcaacagtgagg 46920360
Score = 398 bits (201), Expect = e-108
Identities = 209/212 (98%)
Strand = Plus / Plus
Query: 353 cagcactgactcatacattgaagtccttgatggttctcgagtccaccctgagacctacga 412
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 46914635 cagcactgactcatacatcgaagtccttgatggttctcgagtccaccctgagacctacga 46914694
Query: 413 gtgggccaggaagatggcagtggatgctctggaatatgatgaatcagccgaggatgccaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46914695 gtgggccaggaagatggcagtggatgctctggaatatgatgaatcagccgaggatgccaa 46914754
Query: 473 ccctgcaggagcccttgaagagatcttggaaaacccggagcgactcanggacctggacct 532
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 46914755 ccctgcaggagcccttgaagagatcttggaaaacccggagcgactcaaggacctggacct 46914814
Query: 533 tgatgcctttgcagaagagctagagaggcagg 564
||| ||||||||||||||||||||||||||||
Sbjct: 46914815 tgacgcctttgcagaagagctagagaggcagg 46914846
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 994 aggtgggaatgactgttcactgccgaatcatgaagattgacatcgagaagtttagtgcag 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46919536 aggtgggaatgactgttcactgccgaatcatgaagattgacatcgagaagtttagtgcag 46919595
Query: 1054 acctgacctgccgcacctcagacctcatggacaggaacaacgagtggaagctgcccaagg 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46919596 acctgacctgccgcacctcagacctcatggacaggaacaacgagtggaagctgcccaagg 46919655
Query: 1114 acacctactatgactttgacgctgaagcagcagaccacaagcaggaggaggacatgaagc 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46919656 acacctactatgactttgacgctgaagcagcagaccacaagcaggaggaggacatgaagc 46919715
Query: 1174 ggaagcagcagcggacta 1191
||||||||||||||||||
Sbjct: 46919716 ggaagcagcagcggacta 46919733
Score = 331 bits (167), Expect = 9e-88
Identities = 170/171 (99%)
Strand = Plus / Plus
Query: 57 caggagcatgtggtgaaagaagagctgcttaatgccttatactgtgaatttatcaaccga 116
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 46912039 caggagcatgtggtgaaagaagagctgcttaatgccttgtactgtgaatttatcaaccga 46912098
Query: 117 gtcaatgaggtgggggtcgatgtcaaccgtgccattgcccacccctacagccaggcctta 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46912099 gtcaatgaggtgggggtcgatgtcaaccgtgccattgcccacccctacagccaggcctta 46912158
Query: 177 atccagtatgtttgtggactgggacctcgaaaagggacccatctcctgaag 227
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46912159 atccagtatgtttgtggactgggacctcgaaaagggacccatctcctgaag 46912209
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 711 ggaaagctcatcatctgcaacgtcactggcattgcccacaggcgcccacagggtgagagc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46915930 ggaaagctcatcatctgcaacgtcactggcattgcccacaggcgcccacagggtgagagc 46915989
Query: 771 tatgaccaggcaatccggaacgatgagacagggctatggcagtgccccttctgtcaacag 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46915990 tatgaccaggcaatccggaacgatgagacagggctatggcagtgccccttctgtcaacag 46916049
Query: 831 gacaatttccctgaactaagtgaggt 856
||||||||||||||||||||||||||
Sbjct: 46916050 gacaatttccctgaactaagtgaggt 46916075
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 853 aggtctggaaccactttgacagcggttcatgcccaggccaggccattggtgtcaaaacac 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46917893 aggtctggaaccactttgacagcggttcatgcccaggccaggccattggtgtcaaaacac 46917952
Query: 913 ggctagacaatggtgtcaccggcttcatccccaccaaattcctcagtgacaaagtggtaa 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46917953 ggctagacaatggtgtcaccggcttcatccccaccaaattcctcagtgacaaagtggtaa 46918012
Query: 973 agcggccagaggagcgagtcaaggt 997
|||||||||||||||||||||||||
Sbjct: 46918013 agcggccagaggagcgagtcaaggt 46918037
Score = 262 bits (132), Expect = 7e-67
Identities = 148/152 (97%), Gaps = 1/152 (0%)
Strand = Plus / Plus
Query: 561 cagggctatggtgacaaacacatcactctgtacgacatcccggcagagctgagctgtcga 620
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 46915339 cagggctatggtgacaaacacatcactctgtacgacatccgggcagaactgagctgtcga 46915398
Query: 621 tataaggacctccggacagcttaccgctctcccaacacagaggagatcttcaatatgtta 680
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 46915399 tataaggac-tccggacagcttaccgctctcccaacacagaggaaatcttcaatatgtta 46915457
Query: 681 accaaagaaacaccggagaccttctacattgg 712
||||||||||||||||||||||||||||||||
Sbjct: 46915458 accaaagaaacaccggagaccttctacattgg 46915489
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 226 agatcctgaaacagaacaacacgaggcttgagagccggacccagctggtcaccatgtgcc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46913391 agatcctgaaacagaacaacacgaggcttgagagccggacccagctggtcaccatgtgcc 46913450
Query: 286 acatgggtcccaaagtcttcatgaattgtgccggcttcctcaagatcgacacggcctccc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46913451 acatgggtcccaaagtcttcatgaattgtgccggcttcctcaagatcgacacggcctccc 46913510
Query: 346 taggggacag 355
||||||||||
Sbjct: 46913511 taggggacag 46913520
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1543 agaaattagaggagctgctcatcaaaactaagaaggagaagcccaccttcattccctatt 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46921203 agaaattagaggagctgctcatcaaaactaagaaggagaagcccaccttcattccctatt 46921262
Query: 1603 tcatctgtgcctgcaaggaactgcccggcaagttcctactgggataccagccccggggta 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46921263 tcatctgtgcctgcaaggaactgcccggcaagttcctactgggataccagccccggggta 46921322
Query: 1663 aacccagg 1670
||||||||
Sbjct: 46921323 aacccagg 46921330
Score = 250 bits (126), Expect = 3e-63
Identities = 151/159 (94%), Gaps = 1/159 (0%)
Strand = Plus / Plus
Query: 1855 ttgcagatctgacacgggctgtgaacgccttgccccagaacatgacttcacagatgttca 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46923764 ttgcagatctgacacgggctgtgaacgccttgccccagaacatgacttcacagatgttca 46923823
Query: 1915 gtgccattgctgccgtgacgggcccagg-caaaaccnntatgccaccccagcccagtggg 1973
|||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||
Sbjct: 46923824 gtgccattgctgccgtgacgggccaaggccagaaccctaatgccaccccagcccagtggg 46923883
Query: 1974 cctccagccantatggctatggcggcagtggaaggggca 2012
|||||||||| ||||||||||||||||||||| ||||||
Sbjct: 46923884 cctccagccagtatggctatggcggcagtggagggggca 46923922
Score = 236 bits (119), Expect = 4e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1665 cccaggattgaatatgtaacagtgactccagaaggattccggtaccggggccaaatcttc 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46922961 cccaggattgaatatgtaacagtgactccagaaggattccggtaccggggccaaatcttc 46923020
Query: 1725 cccactgtgaacggccttttcagatggtttaaggatcactatcaggatcctgtaccagg 1783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46923021 cccactgtgaacggccttttcagatggtttaaggatcactatcaggatcctgtaccagg 46923079
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1429 aggaatttgaagacttggatgagattgttgcccgctatgttcagcccatggcctcctttg 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920919 aggaatttgaagacttggatgagattgttgcccgctatgttcagcccatggcctcctttg 46920978
Query: 1489 cccgggaccttctgaaccacaagtattatcaggactgcagtggtggggaccgtaag 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920979 cccgggaccttctgaaccacaagtattatcaggactgcagtggtggggaccgtaag 46921034
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1780 caggcatcacccccagtagcagcagcaggacccggacacctgcttctatcaatgctaccc 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46923595 caggcatcacccccagtagcagcagcaggacccggacacctgcttctatcaatgctaccc 46923654
Query: 1840 cagccaacatcaaccttgcag 1860
|||||||||||||||||||||
Sbjct: 46923655 cagccaacatcaaccttgcag 46923675
Score = 119 bits (60), Expect = 6e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ttgcccaggtgtgcagctctgatgaagacatcctgtgcctcaagtttcaccccttgcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46911908 ttgcccaggtgtgcagctctgatgaagacatcctgtgcctcaagtttcaccccttgcagg 46911967
>gb|GL895804.2| Sus scrofa unplaced genomic scaffold ChrUScaf3688
Length = 17328
Score = 339 bits (171), Expect = 4e-90
Identities = 173/174 (99%)
Strand = Plus / Plus
Query: 391 gagtccaccctgagacctacgagtgggccaggaagatggcagtggatgctctggaatatg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6281 gagtccaccctgagacctacgagtgggccaggaagatggcagtggatgctctggaatatg 6340
Query: 451 atgaatcagccgaggatgccaaccctgcaggagcccttgaagagatcttggaaaacccgg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6341 atgaatcagccgaggatgccaaccctgcaggagcccttgaagagatcttggaaaacccgg 6400
Query: 511 agcgactcanggacctggaccttgatgcctttgcagaagagctagagaggcagg 564
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6401 agcgactcaaggacctggaccttgatgcctttgcagaagagctagagaggcagg 6454
Score = 331 bits (167), Expect = 9e-88
Identities = 170/171 (99%)
Strand = Plus / Plus
Query: 57 caggagcatgtggtgaaagaagagctgcttaatgccttatactgtgaatttatcaaccga 116
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3523 caggagcatgtggtgaaagaagagctgcttaatgccttgtactgtgaatttatcaaccga 3582
Query: 117 gtcaatgaggtgggggtcgatgtcaaccgtgccattgcccacccctacagccaggcctta 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3583 gtcaatgaggtgggggtcgatgtcaaccgtgccattgcccacccctacagccaggcctta 3642
Query: 177 atccagtatgtttgtggactgggacctcgaaaagggacccatctcctgaag 227
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3643 atccagtatgtttgtggactgggacctcgaaaagggacccatctcctgaag 3693
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 711 ggaaagctcatcatctgcaacgtcactggcattgcccacaggcgcccacagggtgagagc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7620 ggaaagctcatcatctgcaacgtcactggcattgcccacaggcgcccacagggtgagagc 7679
Query: 771 tatgaccaggcaatccggaacgatgagacagggctatggcagtgccccttctgtcaacag 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7680 tatgaccaggcaatccggaacgatgagacagggctatggcagtgccccttctgtcaacag 7739
Query: 831 gacaatttccctgaactaagtgaggt 856
||||||||||||||||||||||||||
Sbjct: 7740 gacaatttccctgaactaagtgaggt 7765
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 226 agatcctgaaacagaacaacacgaggcttgagagccggacccagctggtcaccatgtgcc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4871 agatcctgaaacagaacaacacgaggcttgagagccggacccagctggtcaccatgtgcc 4930
Query: 286 acatgggtcccaaagtcttcatgaattgtgccggcttcctcaagatcgacacggcctccc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931 acatgggtcccaaagtcttcatgaattgtgccggcttcctcaagatcgacacggcctccc 4990
Query: 346 taggggacag 355
||||||||||
Sbjct: 4991 taggggacag 5000
Score = 165 bits (83), Expect = 1e-37
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 626 ggacctccggacagcttaccgctctcccaacacagaggagatcttcaatatgttaaccaa 685
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7093 ggacctccggacagcttaccgctctcccaacacagaggaaatcttcaatatgttaaccaa 7152
Query: 686 agaaacaccggagaccttctacattgg 712
|||||||||||||||||||||||||||
Sbjct: 7153 agaaacaccggagaccttctacattgg 7179
Score = 119 bits (60), Expect = 6e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ttgcccaggtgtgcagctctgatgaagacatcctgtgcctcaagtttcaccccttgcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3392 ttgcccaggtgtgcagctctgatgaagacatcctgtgcctcaagtttcaccccttgcagg 3451
Score = 79.8 bits (40), Expect = 5e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 561 cagggctatggtgacaaacacatcactctgtacgacatcc 600
||||||||||||||||||||||||||||||||||||||||
Sbjct: 6949 cagggctatggtgacaaacacatcactctgtacgacatcc 6988
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,985,938
Number of extensions: 252
Number of successful extensions: 252
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 21
Length of query: 2012
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1990
Effective length of database: 2,808,408,574
Effective search space: 5588733062260
Effective search space used: 5588733062260
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)