Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003742
(1085 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029378.1| sterol O-acyltransferase 1 [Bos taurus]. 456 e-128
Alignment gi|NP_001095446.1| sterol O-acyltransferase 2 [Bos taurus]. 145 6e-35
>ref|NP_001029378.1| sterol O-acyltransferase 1 [Bos taurus].
Length = 551
Score = 456 bits (1172), Expect = e-128
Identities = 230/292 (78%), Positives = 250/292 (85%), Gaps = 1/292 (0%)
Frame = +3
Query: 213 MVGEE-MSLRKRLSKSSENAEGKEGDQRNRSEESLEPRSNGQINLKQLIAKKIQLTAEAE 389
+VGEE MS+RKRLSKSS +AE +E DQR+ +EES E SNG+++LKQLI+KKI+LTAEAE
Sbjct: 2 VVGEEKMSVRKRLSKSSNHAEEEEEDQRDCAEESQEALSNGRVDLKQLISKKIKLTAEAE 61
Query: 390 ELKPFFMKEVGSHFDDFVTNLIEKSASLDNGGCAVTSFSVLEGENNHRAKDLRAPPEHGK 569
ELKPFFMKEVGSHFDDFVTNLIEKS SLDNGGCA+TSFS+ EG+NNHRAKDLRAPPEHGK
Sbjct: 62 ELKPFFMKEVGSHFDDFVTNLIEKSTSLDNGGCALTSFSIFEGDNNHRAKDLRAPPEHGK 121
Query: 570 IFVIRRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGK 749
IFV RRS+LDEL EVDHIRTIYHMFIALLILFILSTL VDYIDEGRLVLEFNLMSYAFGK
Sbjct: 122 IFVTRRSVLDELFEVDHIRTIYHMFIALLILFILSTLAVDYIDEGRLVLEFNLMSYAFGK 181
Query: 750 LTVAMWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXXX 929
LTV +WTW TMFLCTLTVPYFLFQRWARGY R+SHP+V+S HC
Sbjct: 182 LTVVLWTWLTMFLCTLTVPYFLFQRWARGYHRTSHPVVHSFIHCFLFVVFQIGVLGLGPL 241
Query: 930 XXXXAYTLPPASRCIVICEQIRLIMKAHSFVRENVPRVLNSAKEKSRSVPVP 1085
AYTLPPASRCIVI EQIR IMK HSFVRENVPRVLNSAKEKS +VPVP
Sbjct: 242 YVVLAYTLPPASRCIVILEQIRFIMKTHSFVRENVPRVLNSAKEKSSTVPVP 293
>ref|NP_001095446.1| sterol O-acyltransferase 2 [Bos taurus].
Length = 535
Score = 145 bits (366), Expect = 6e-35
Identities = 75/160 (46%), Positives = 103/160 (64%)
Frame = +3
Query: 567 KIFVIRRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFG 746
K+F+IR+SLLDEL+EV H RTIYHMF+A L +FI+STL +D IDEGRL++EF+L++++FG
Sbjct: 111 KVFIIRKSLLDELMEVPHFRTIYHMFVAGLCVFIISTLAIDLIDEGRLMMEFDLLTFSFG 170
Query: 747 KLTVAMWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXX 926
+L +A+ TW MFL TL VPY + W R +S V
Sbjct: 171 QLPLALVTWVPMFLSTLLVPYQALRLWER--PQSGGAWTLRVGLGCLLLAAHTVVLGILP 228
Query: 927 XXXXXAYTLPPASRCIVICEQIRLIMKAHSFVRENVPRVL 1046
Y LPPASRC+++ EQ+RL+MK++SF+RE P L
Sbjct: 229 VHVAVEYQLPPASRCVLVFEQVRLLMKSYSFLRETGPGTL 268
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,329,659
Number of extensions: 981610
Number of successful extensions: 3941
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3917
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003742
(1085 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547445.2| PREDICTED: similar to Sterol O-acyltransferase ... 462 e-130
Alignment gi|XP_543637.2| PREDICTED: similar to sterol O-acyltransferase ... 150 2e-36
>ref|XP_547445.2| PREDICTED: similar to Sterol O-acyltransferase 1 (Cholesterol
acyltransferase 1) (Acyl coenzyme A:cholesterol
acyltransferase 1) (ACAT-1) [Canis familiaris].
Length = 549
Score = 462 bits (1190), Expect = e-130
Identities = 237/292 (81%), Positives = 254/292 (86%), Gaps = 1/292 (0%)
Frame = +3
Query: 213 MVGEEM-SLRKRLSKSSENAEGKEGDQRNRSEESLEPRSNGQINLKQLIAKKIQLTAEAE 389
MVGEE SLRKRLSKS EN+E KE DQR+ S+ESLE SNG+I++KQL+AKKIQLTAEAE
Sbjct: 1 MVGEEKTSLRKRLSKSRENSEEKE-DQRSPSKESLETPSNGRIDIKQLMAKKIQLTAEAE 59
Query: 390 ELKPFFMKEVGSHFDDFVTNLIEKSASLDNGGCAVTSFSVLEGENNHRAKDLRAPPEHGK 569
ELKPFFMKEVGSHFDDFVTNLIEKS SLDNGGCA+TSFSVLEGENNHRAKDLRAPPEHGK
Sbjct: 60 ELKPFFMKEVGSHFDDFVTNLIEKSTSLDNGGCAITSFSVLEGENNHRAKDLRAPPEHGK 119
Query: 570 IFVIRRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGK 749
IFV+R+SLLDEL EVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGK
Sbjct: 120 IFVVRQSLLDELFEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGK 179
Query: 750 LTVAMWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXXX 929
L VAMWTW MFL TL VPYFLFQRWARGY +SSHP+V+S+FHC
Sbjct: 180 LPVAMWTWWAMFLSTLAVPYFLFQRWARGYSKSSHPVVHSLFHCFLFMVFQIGVLGLGPT 239
Query: 930 XXXXAYTLPPASRCIVICEQIRLIMKAHSFVRENVPRVLNSAKEKSRSVPVP 1085
AYTLPPASRCIVI EQIR IMKAHSFVRENVPRVLNSAKEKS+++PVP
Sbjct: 240 YVVLAYTLPPASRCIVILEQIRFIMKAHSFVRENVPRVLNSAKEKSKTIPVP 291
>ref|XP_543637.2| PREDICTED: similar to sterol O-acyltransferase 2 [Canis familiaris].
Length = 520
Score = 150 bits (380), Expect = 2e-36
Identities = 101/264 (38%), Positives = 138/264 (52%), Gaps = 5/264 (1%)
Frame = +3
Query: 270 EGKEGDQRNRSEESLEPRSNGQINLKQLIAKKIQLTAEAEELKPFFMKEVGSHFDDFVTN 449
EG G+Q +R EP S G + + L K QL H +T
Sbjct: 12 EGPRGEQEDRPSGEGEPPSGGAESWEVLEVVKTQLL---------------EHAQGQLTE 56
Query: 450 LIEKSASLDNGGCAVTSFSVLEGE-----NNHRAKDLRAPPEHGKIFVIRRSLLDELLEV 614
L++++ AV S+ G + +K P KIF+IR+SLLDEL+EV
Sbjct: 57 LLDRAMWE-----AVRSYPPQGGPLPSTPPDSLSKGREPSPGKRKIFIIRKSLLDELMEV 111
Query: 615 DHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGKLTVAMWTWCTMFLCT 794
H RTIYHMFIA L +FI+STL +D IDEGRL+LEF+L+ ++FG+L +A+ TW MFL T
Sbjct: 112 QHFRTIYHMFIAGLCVFIISTLAIDLIDEGRLMLEFDLLIFSFGQLPLALMTWVPMFLST 171
Query: 795 LTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXXXXXXXAYTLPPASRCI 974
L VPY + + AR R+ V Y LPPASRCI
Sbjct: 172 LLVPYQVLRLGAR--PRAGGAWVLRAGLGCVLLVAHTVGLCALPVLVALKYQLPPASRCI 229
Query: 975 VICEQIRLIMKAHSFVRENVPRVL 1046
++ EQ+RL+MK++SF+RE +P L
Sbjct: 230 LVFEQVRLLMKSYSFLREALPGTL 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,914,270
Number of extensions: 1008572
Number of successful extensions: 4021
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4016
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003742
(1085 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003092.4| sterol O-acyltransferase 1 [Homo sapiens]. 426 e-119
Alignment gi|NP_003569.1| sterol O-acyltransferase 2 [Homo sapiens]. 150 3e-36
>ref|NP_003092.4| sterol O-acyltransferase 1 [Homo sapiens].
Length = 550
Score = 426 bits (1096), Expect = e-119
Identities = 223/293 (76%), Positives = 243/293 (82%), Gaps = 2/293 (0%)
Frame = +3
Query: 213 MVGEE-MSLRKRLSKSSENAEGKEGDQRNRSEESLEPRSNGQINLKQLIAKKIQLTAEAE 389
MVGEE MSLR RLSKS EN E E DQRN ++ESLE SNG+I++KQLIAKKI+LTAEAE
Sbjct: 1 MVGEEKMSLRNRLSKSRENPEEDE-DQRNPAKESLETPSNGRIDIKQLIAKKIKLTAEAE 59
Query: 390 ELKPFFMKEVGSHFDDFVTNLIEKSASLDNGGCAVTSFSVLEGE-NNHRAKDLRAPPEHG 566
ELKPFFMKEVGSHFDDFVTNLIEKSASLDNGGCA+T+FSVLEGE NNHRAKDLRAPPE G
Sbjct: 60 ELKPFFMKEVGSHFDDFVTNLIEKSASLDNGGCALTTFSVLEGEKNNHRAKDLRAPPEQG 119
Query: 567 KIFVIRRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFG 746
KIF+ RRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEF+L+SYAFG
Sbjct: 120 KIFIARRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFSLLSYAFG 179
Query: 747 KLTVAMWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXX 926
K +WTW MFL T +VPYFLFQ WA GY +SSHPL+ S+FH
Sbjct: 180 KFPTVVWTWWIMFLSTFSVPYFLFQHWATGYSKSSHPLIRSLFHGFLFMIFQIGVLGFGP 239
Query: 927 XXXXXAYTLPPASRCIVICEQIRLIMKAHSFVRENVPRVLNSAKEKSRSVPVP 1085
AYTLPPASR I+I EQIR +MKAHSFVRENVPRVLNSAKEKS +VP+P
Sbjct: 240 TYVVLAYTLPPASRFIIIFEQIRFVMKAHSFVRENVPRVLNSAKEKSSTVPIP 292
>ref|NP_003569.1| sterol O-acyltransferase 2 [Homo sapiens].
Length = 522
Score = 150 bits (378), Expect = 3e-36
Identities = 77/171 (45%), Positives = 109/171 (63%)
Frame = +3
Query: 567 KIFVIRRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFG 746
K+F+IR+SLLDEL+EV H RTIYHMFIA L +FI+STL +D+IDEGRL+LEF+L+ ++FG
Sbjct: 102 KVFIIRKSLLDELMEVQHFRTIYHMFIAGLCVFIISTLAIDFIDEGRLLLEFDLLIFSFG 161
Query: 747 KLTVAMWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXX 926
+L +A+ TW MFL TL PY + WARG + L ++
Sbjct: 162 QLPLALVTWVPMFLSTLLAPYQALRLWARGTWTQATGLGCALL------AAHAVVLCALP 215
Query: 927 XXXXXAYTLPPASRCIVICEQIRLIMKAHSFVRENVPRVLNSAKEKSRSVP 1079
+ LPPASRC+++ EQ+R +MK++SF+RE VP L + + + P
Sbjct: 216 VHVAVEHQLPPASRCVLVFEQVRFLMKSYSFLREAVPGTLRARRGEGIQAP 266
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,305,476
Number of extensions: 1000518
Number of successful extensions: 3657
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3647
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003742
(1085 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033256.2| sterol O-acyltransferase 1 [Mus musculus]. 383 e-106
Alignment gi|NP_666176.1| sterol O-acyltransferase 2 [Mus musculus]. 146 3e-35
>ref|NP_033256.2| sterol O-acyltransferase 1 [Mus musculus].
Length = 540
Score = 383 bits (984), Expect = e-106
Identities = 199/287 (69%), Positives = 223/287 (77%), Gaps = 1/287 (0%)
Frame = +3
Query: 228 MSLRKRLSKSSENAEGKEGDQRNRSEESLEPRSNGQINLKQLIAKKIQLTAEAEELKPFF 407
MSLR RLSKS EN E E Q+N ++ NG I +KQLIAKK L AEAEELKP F
Sbjct: 1 MSLRNRLSKSGENPEQDEA-QKN----FMDTYRNGHITMKQLIAKKRLLAAEAEELKPLF 55
Query: 408 MKEVGSHFDDFVTNLIEKSASLDNGGCAVTSFSVLEG-ENNHRAKDLRAPPEHGKIFVIR 584
MKEVG HFDDFVTNLIEKSASLDNGGCA+T+FS+LE + NHRAKDLRAPPE GKIF+ R
Sbjct: 56 MKEVGCHFDDFVTNLIEKSASLDNGGCALTTFSILEEMKKNHRAKDLRAPPEQGKIFISR 115
Query: 585 RSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGKLTVAM 764
+SLLDEL EVDHIRTIYHMFIALLILF+LST+VVDYIDEGRLVLEFNL++YAFGK +
Sbjct: 116 QSLLDELFEVDHIRTIYHMFIALLILFVLSTIVVDYIDEGRLVLEFNLLAYAFGKFPTVI 175
Query: 765 WTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXXXXXXXA 944
WTW MFL TL++PYFLFQRWA GY +SSHPL+YS+ H A
Sbjct: 176 WTWWAMFLSTLSIPYFLFQRWAHGYSKSSHPLIYSLVHGLLFLVFQLGVLGFVPTYVVLA 235
Query: 945 YTLPPASRCIVICEQIRLIMKAHSFVRENVPRVLNSAKEKSRSVPVP 1085
YTLPPASR I+I EQIRLIMKAHSFVREN+PRVLN+AKEKS P+P
Sbjct: 236 YTLPPASRFILILEQIRLIMKAHSFVRENIPRVLNAAKEKSSKDPLP 282
>ref|NP_666176.1| sterol O-acyltransferase 2 [Mus musculus].
Length = 525
Score = 146 bits (368), Expect = 3e-35
Identities = 97/286 (33%), Positives = 143/286 (50%), Gaps = 4/286 (1%)
Frame = +3
Query: 234 LRKRLSKSSENAEGKEGDQRNRSEESLEPRSNGQINLKQLIAKKIQLTAEAEELKPFFM- 410
LR+R E +G G + N R++G +L +Q T E +K F+
Sbjct: 8 LRRREGLGEEQEKGARGGEGNA-------RTHGTPDL-------VQWTRHMEAVKTQFLE 53
Query: 411 ---KEVGSHFDDFVTNLIEKSASLDNGGCAVTSFSVLEGENNHRAKDLRAPPEHGKIFVI 581
+E+ D + ++ D + S + + H P K+F+
Sbjct: 54 QAQRELAELLDRALWEAMQAYPKQDRPLPSAAPDSTSKTQELH--------PGKRKVFIT 105
Query: 582 RRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGKLTVA 761
R+SL+DEL+EV H RTIYHMFIA L + I+STL +D+IDEGRL+LEF+L+ ++FG+L +A
Sbjct: 106 RKSLIDELMEVQHFRTIYHMFIAGLCVLIISTLAIDFIDEGRLMLEFDLLLFSFGQLPLA 165
Query: 762 MWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXXXXXXX 941
+ TW MFL TL VPY WAR R+ +
Sbjct: 166 LMTWVPMFLSTLLVPYQTLWLWAR--PRAGGAWMLGASLGCVLLAAHAVVLCVLPVHVSV 223
Query: 942 AYTLPPASRCIVICEQIRLIMKAHSFVRENVPRVLNSAKEKSRSVP 1079
+ LPPASRC+++ EQ+RL+MK++SF+RE VP + K S P
Sbjct: 224 RHELPPASRCVLVFEQVRLLMKSYSFLRETVPGIFCVRGGKGISPP 269
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,464,198
Number of extensions: 844429
Number of successful extensions: 3236
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3212
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003742
(1085 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357604.1| PREDICTED: hypothetical protein LOC100628166... 473 e-134
Alignment gi|XP_003126232.2| PREDICTED: LOW QUALITY PROTEIN: sterol O-acy... 150 2e-36
>ref|XP_003357604.1| PREDICTED: hypothetical protein LOC100628166 [Sus scrofa].
Length = 538
Score = 473 bits (1217), Expect = e-134
Identities = 238/259 (91%), Positives = 239/259 (92%)
Frame = +3
Query: 213 MVGEEMSLRKRLSKSSENAEGKEGDQRNRSEESLEPRSNGQINLKQLIAKKIQLTAEAEE 392
MVGEEMSLRKRLSKSSENAEGKEGDQR+RSEESLEPRSNGQINLKQLIAKKIQLTAEAEE
Sbjct: 1 MVGEEMSLRKRLSKSSENAEGKEGDQRDRSEESLEPRSNGQINLKQLIAKKIQLTAEAEE 60
Query: 393 LKPFFMKEVGSHFDDFVTNLIEKSASLDNGGCAVTSFSVLEGENNHRAKDLRAPPEHGKI 572
LKPFFMKEVGSHFDDFVTNLIEKSASLDNGGCAVTSFSVLEGENNHRAKDLRAPPEHGKI
Sbjct: 61 LKPFFMKEVGSHFDDFVTNLIEKSASLDNGGCAVTSFSVLEGENNHRAKDLRAPPEHGKI 120
Query: 573 FVIRRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGKL 752
FVIRRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGKL
Sbjct: 121 FVIRRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFGKL 180
Query: 753 TVAMWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXXXX 932
TVAMWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHC
Sbjct: 181 TVAMWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCFLFVVFQVGVLGLGPLY 240
Query: 933 XXXAYTLPPASRCIVICEQ 989
AYTLPPASRCIVICEQ
Sbjct: 241 VVLAYTLPPASRCIVICEQ 259
>ref|XP_003126232.2| PREDICTED: LOW QUALITY PROTEIN: sterol O-acyltransferase 2-like [Sus
scrofa].
Length = 535
Score = 150 bits (378), Expect = 2e-36
Identities = 78/171 (45%), Positives = 107/171 (62%)
Frame = +3
Query: 567 KIFVIRRSLLDELLEVDHIRTIYHMFIALLILFILSTLVVDYIDEGRLVLEFNLMSYAFG 746
K+F+IR+SLLDEL+EV H RTIYHMFIA L +FI+STL +D IDEGRL+LEF+L+ + FG
Sbjct: 111 KVFIIRKSLLDELMEVQHFRTIYHMFIAGLCVFIISTLAIDLIDEGRLMLEFDLLIFNFG 170
Query: 747 KLTVAMWTWCTMFLCTLTVPYFLFQRWARGYDRSSHPLVYSVFHCXXXXXXXXXXXXXXX 926
+L +A+ TW MFL TL VPY + WAR ++ + V
Sbjct: 171 QLPLALMTWVPMFLSTLLVPYQTLRLWAR--PQAGGARMLRVALGCVLLAAHTAVLGILP 228
Query: 927 XXXXXAYTLPPASRCIVICEQIRLIMKAHSFVRENVPRVLNSAKEKSRSVP 1079
Y LPPASRC+++ EQ+R +MK++SF+RE VP L + + + P
Sbjct: 229 VHVAVEYQLPPASRCVLVFEQVRFLMKSYSFLRETVPGTLGTGRGEGVRTP 279
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,642,822
Number of extensions: 627449
Number of successful extensions: 2477
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2469
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003742
(1085 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 565 e-158
>Sscrofa_Chr09
|| Length = 153670197
Score = 565 bits (285), Expect = e-158
Identities = 285/285 (100%)
Strand = Plus / Minus
Query: 705 aggctggtgctggagttcaatctcatgtcttacgcttttggcaaactgactgttgccatg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132910074 aggctggtgctggagttcaatctcatgtcttacgcttttggcaaactgactgttgccatg 132910015
Query: 765 tggacatggtgcaccatgttcttatgcaccctgacagttccctacttcctgtttcaacgc 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132910014 tggacatggtgcaccatgttcttatgcaccctgacagttccctacttcctgtttcaacgc 132909955
Query: 825 tgggccagaggctatgacaggagttctcatccgctggtctattctgtcttccattgcttc 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132909954 tgggccagaggctatgacaggagttctcatccgctggtctattctgtcttccattgcttc 132909895
Query: 885 ctttttgtggtcttccaggttggagttctgggcttggggccactttatgttgtcttagca 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132909894 ctttttgtggtcttccaggttggagttctgggcttggggccactttatgttgtcttagca 132909835
Query: 945 tatacactgccaccagcttcccgctgcattgttatatgcgaacag 989
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132909834 tatacactgccaccagcttcccgctgcattgttatatgcgaacag 132909790
Score = 396 bits (200), Expect = e-108
Identities = 203/204 (99%)
Strand = Plus / Plus
Query: 1 gcgttacgctgcgtagcgggctgcgaggctgggggcggaggggctggtgagttggaagct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 132840424 gcgttacgctgcgtagcgggctgcgaggctgggggcggaggggctggtgagttggacgct 132840483
Query: 61 tattcttggtctgcggttggttgcgttgccggcctggggcagccggagttcggctgcgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132840484 tattcttggtctgcggttggttgcgttgccggcctggggcagccggagttcggctgcgaa 132840543
Query: 121 ctgaccttcctgcaacccacgctgtgacggtttcccggctttgctctccttgctcaggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132840544 ctgaccttcctgcaacccacgctgtgacggtttcccggctttgctctccttgctcaggtc 132840603
Query: 181 cctgttgtcgggctccggccccag 204
||||||||||||||||||||||||
Sbjct: 132840604 cctgttgtcgggctccggccccag 132840627
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 388 aggaattgaagcccttttttatgaaggaagttggcagtcactttgatgactttgtgacca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132914634 aggaattgaagcccttttttatgaaggaagttggcagtcactttgatgactttgtgacca 132914575
Query: 448 atctcattgaaaaatctgcctcattagacaatggtggctgtgctgtcacatccttttctg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132914574 atctcattgaaaaatctgcctcattagacaatggtggctgtgctgtcacatccttttctg 132914515
Query: 508 tccttgaaggagagaacaaccacagggcgaa 538
|||||||||||||||||||||||||||||||
Sbjct: 132914514 tccttgaaggagagaacaaccacagggcgaa 132914484
Score = 250 bits (126), Expect = 1e-63
Identities = 129/130 (99%)
Strand = Plus / Minus
Query: 203 agacaccacgatggtgggcgaagaaatgtctctgagaaaacgcctgtcaaagtccagcga 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132952008 agacaccacgatggtgggcgaagaaatgtctctgagaaaacgcctgtcaaagtccagcga 132951949
Query: 263 aaatgctgagggaaaggaaggcgaccaaagaaaccgttcagaggagtccctagagccccg 322
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 132951948 aaatgctgagggaaaggaaggcgaccaaagagaccgttcagaggagtccctagagccccg 132951889
Query: 323 cagcaacggt 332
||||||||||
Sbjct: 132951888 cagcaacggt 132951879
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 599 tgagctgttagaggtggaccacatcagaacaatatatcacatgttcattgccctcctcat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132911104 tgagctgttagaggtggaccacatcagaacaatatatcacatgttcattgccctcctcat 132911045
Query: 659 tctcttcatcctcagcacacttgtagtagattacattgatgaaggaagg 707
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132911044 tctcttcatcctcagcacacttgtagtagattacattgatgaaggaagg 132910996
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 988 agattcgtttgataatgaaggctcattcatttgtccgagagaatgtgcctcgggtactca 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132908206 agattcgtttgataatgaaggctcattcatttgtccgagagaatgtgcctcgggtactca 132908147
Query: 1048 actcagccaaagagaaatcacg 1069
||||||||||||||||||||||
Sbjct: 132908146 actcagccaaagagaaatcacg 132908125
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 330 ggtcagattaatttaaaacagttgatagcaaagaagatacaattgacagcagaggcagag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132934020 ggtcagattaatttaaaacagttgatagcaaagaagatacaattgacagcagaggcagag 132933961
Query: 390 g 390
|
Sbjct: 132933960 g 132933960
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 539 agatctgcgagcacctccagaacatggaaagatttttgttataaggcgatctctcttaga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132912766 agatctgcgagcacctccagaacatggaaagatttttgttataaggcgatctctcttaga 132912707
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,069,051
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 8
Length of query: 1085
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1064
Effective length of database: 2,808,413,156
Effective search space: 2988151597984
Effective search space used: 2988151597984
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)