Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003743
(1172 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029422.1| exocyst complex component 7 [Bos taurus]. 686 0.0
>ref|NP_001029422.1| exocyst complex component 7 [Bos taurus].
Length = 653
Score = 686 bits (1770), Expect = 0.0
Identities = 347/364 (95%), Positives = 354/364 (97%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTE+IIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLI GEDDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLIGGEDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
E+ +EVPLEHLPESVL DV+RI+RWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK
Sbjct: 181 ELQEEVPLEHLPESVLHDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL 979
GVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL 300
Query: 980 TDVIPEHHQKKTFDSLIQDALDGLMLEGENIVGAARKAIIRHDFSAVLTVFPILRHLQQN 1159
TDVIPEHHQKKTFDSLIQDALDGLMLEGENIV AARKAI+RHDFSAVLTVFPILRHL+Q
Sbjct: 301 TDVIPEHHQKKTFDSLIQDALDGLMLEGENIVVAARKAIVRHDFSAVLTVFPILRHLKQT 360
Query: 1160 KPEF 1171
KPEF
Sbjct: 361 KPEF 364
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,262,320
Number of extensions: 1069742
Number of successful extensions: 5409
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5356
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003743
(1172 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,230,091
Number of extensions: 1119949
Number of successful extensions: 5768
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5749
Number of HSP's successfully gapped: 0
Length of query: 390
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,374,224
Effective search space: 4381653840
Effective search space used: 4381653840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003743
(1172 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056034.2| exocyst complex component 7 isoform 2 [Homo sap... 678 0.0
Alignment gi|NP_001138770.1| exocyst complex component 7 isoform 5 [Homo ... 665 0.0
Alignment gi|NP_001013861.1| exocyst complex component 7 isoform 1 [Homo ... 662 0.0
Alignment gi|NP_001138771.1| exocyst complex component 7 isoform 6 [Homo ... 637 0.0
Alignment gi|NP_001138769.1| exocyst complex component 7 isoform 4 [Homo ... 503 e-142
>ref|NP_056034.2| exocyst complex component 7 isoform 2 [Homo sapiens].
Length = 653
Score = 678 bits (1750), Expect = 0.0
Identities = 342/364 (93%), Positives = 351/364 (96%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTE+IIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKE+LESEFRSLMTRHSKVVSPVLILDLISG+DDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKEALESEFRSLMTRHSKVVSPVLILDLISGDDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
E ++V LEHLPESVLQDVIRI+RWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHF K
Sbjct: 181 EAQEDVTLEHLPESVLQDVIRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFHK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL 979
GVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL 300
Query: 980 TDVIPEHHQKKTFDSLIQDALDGLMLEGENIVGAARKAIIRHDFSAVLTVFPILRHLQQN 1159
D+IPEHHQKKTFDSLIQDALDGLMLEGENIV AARKAI+RHDFS VLTVFPILRHL+Q
Sbjct: 301 ADIIPEHHQKKTFDSLIQDALDGLMLEGENIVSAARKAIVRHDFSTVLTVFPILRHLKQT 360
Query: 1160 KPEF 1171
KPEF
Sbjct: 361 KPEF 364
>ref|NP_001138770.1| exocyst complex component 7 isoform 5 [Homo sapiens].
Length = 676
Score = 665 bits (1716), Expect = 0.0
Identities = 342/387 (88%), Positives = 351/387 (90%), Gaps = 23/387 (5%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTE+IIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKE+LESEFRSLMTRHSKVVSPVLILDLISG+DDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKEALESEFRSLMTRHSKVVSPVLILDLISGDDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
E ++V LEHLPESVLQDVIRI+RWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHF K
Sbjct: 181 EAQEDVTLEHLPESVLQDVIRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFHK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRP-----------------------GRDDMLDV 910
GVPYSPAIPNKRKDTPTKKPVKRP GRDDMLDV
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGHEHDFRVKHLSEALNDKHGPLAGRDDMLDV 300
Query: 911 ETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGENIVGAARK 1090
ETDAYIHCVSAFVKLAQSEYQLL D+IPEHHQKKTFDSLIQDALDGLMLEGENIV AARK
Sbjct: 301 ETDAYIHCVSAFVKLAQSEYQLLADIIPEHHQKKTFDSLIQDALDGLMLEGENIVSAARK 360
Query: 1091 AIIRHDFSAVLTVFPILRHLQQNKPEF 1171
AI+RHDFS VLTVFPILRHL+Q KPEF
Sbjct: 361 AIVRHDFSTVLTVFPILRHLKQTKPEF 387
>ref|NP_001013861.1| exocyst complex component 7 isoform 1 [Homo sapiens].
Length = 684
Score = 662 bits (1708), Expect = 0.0
Identities = 342/395 (86%), Positives = 351/395 (88%), Gaps = 31/395 (7%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTE+IIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKE+LESEFRSLMTRHSKVVSPVLILDLISG+DDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKEALESEFRSLMTRHSKVVSPVLILDLISGDDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
E ++V LEHLPESVLQDVIRI+RWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHF K
Sbjct: 181 EAQEDVTLEHLPESVLQDVIRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFHK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPG------------------------------ 889
GVPYSPAIPNKRKDTPTKKPVKRPG
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGTIRKAQNLLKQYSQHGLDGKKGGSNLIPLE 300
Query: 890 -RDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGE 1066
RDDMLDVETDAYIHCVSAFVKLAQSEYQLL D+IPEHHQKKTFDSLIQDALDGLMLEGE
Sbjct: 301 GRDDMLDVETDAYIHCVSAFVKLAQSEYQLLADIIPEHHQKKTFDSLIQDALDGLMLEGE 360
Query: 1067 NIVGAARKAIIRHDFSAVLTVFPILRHLQQNKPEF 1171
NIV AARKAI+RHDFS VLTVFPILRHL+Q KPEF
Sbjct: 361 NIVSAARKAIVRHDFSTVLTVFPILRHLKQTKPEF 395
>ref|NP_001138771.1| exocyst complex component 7 isoform 6 [Homo sapiens].
Length = 707
Score = 637 bits (1642), Expect = 0.0
Identities = 338/418 (80%), Positives = 348/418 (83%), Gaps = 54/418 (12%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTE+IIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKE+LESEFRSLMTRHSKVVSPVLILDLISG+DDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKEALESEFRSLMTRHSKVVSPVLILDLISGDDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
E ++V LEHLPESVLQDVIRI+RWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHF K
Sbjct: 181 EAQEDVTLEHLPESVLQDVIRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFHK 240
Query: 800 XXXXXGVPYSPAIPNKRKDT----PTKKP------------------------------- 874
GVPYSPAIPNKRKDT P K+P
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGTIRKAQNLLKQYSQHGLDGKKGGSNLIPLE 300
Query: 875 -------VKR------------PGRDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPE 997
VK GRDDMLDVETDAYIHCVSAFVKLAQSEYQLL D+IPE
Sbjct: 301 GHEHDFRVKHLSEALNDKHGPLAGRDDMLDVETDAYIHCVSAFVKLAQSEYQLLADIIPE 360
Query: 998 HHQKKTFDSLIQDALDGLMLEGENIVGAARKAIIRHDFSAVLTVFPILRHLQQNKPEF 1171
HHQKKTFDSLIQDALDGLMLEGENIV AARKAI+RHDFS VLTVFPILRHL+Q KPEF
Sbjct: 361 HHQKKTFDSLIQDALDGLMLEGENIVSAARKAIVRHDFSTVLTVFPILRHLKQTKPEF 418
>ref|NP_001138769.1| exocyst complex component 7 isoform 4 [Homo sapiens].
Length = 735
Score = 503 bits (1296), Expect = e-142
Identities = 255/270 (94%), Positives = 261/270 (96%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTE+IIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKE+LESEFRSLMTRHSKVVSPVLILDLISG+DDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKEALESEFRSLMTRHSKVVSPVLILDLISGDDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
E ++V LEHLPESVLQDVIRI+RWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHF K
Sbjct: 181 EAQEDVTLEHLPESVLQDVIRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFHK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPG 889
GVPYSPAIPNKRKDTPTKKPVKRPG
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPG 270
Score = 181 bits (460), Expect = 9e-46
Identities = 88/95 (92%), Positives = 91/95 (95%)
Frame = +2
Query: 887 GRDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGE 1066
GRDDMLDVETDAYIHCVSAFVKLAQSEYQLL D+IPEHHQKKTFDSLIQDALDGLMLEGE
Sbjct: 352 GRDDMLDVETDAYIHCVSAFVKLAQSEYQLLADIIPEHHQKKTFDSLIQDALDGLMLEGE 411
Query: 1067 NIVGAARKAIIRHDFSAVLTVFPILRHLQQNKPEF 1171
NIV AARKAI+RHDFS VLTVFPILRHL+Q KPEF
Sbjct: 412 NIVSAARKAIVRHDFSTVLTVFPILRHLKQTKPEF 446
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,308,661
Number of extensions: 1088551
Number of successful extensions: 5652
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5587
Number of HSP's successfully gapped: 7
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003743
(1172 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156344.1| exocyst complex component 7 isoform 2 [Mus m... 671 0.0
Alignment gi|NP_058553.2| exocyst complex component 7 isoform 1 [Mus musc... 655 0.0
>ref|NP_001156344.1| exocyst complex component 7 isoform 2 [Mus musculus].
Length = 653
Score = 671 bits (1732), Expect = 0.0
Identities = 337/364 (92%), Positives = 352/364 (96%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLT+NMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTRNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTE+IIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVL+LDLIS +D+L
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLLLDLISADDEL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
EV ++V LEHLPESVL+DV+RI+RWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK
Sbjct: 181 EVQEDVVLEHLPESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL 979
GVPYSPAIPNKRKDTPTKKP+KRPGRDDMLDVETDAYIHCVSAFVKLAQSEY+LL
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYRLL 300
Query: 980 TDVIPEHHQKKTFDSLIQDALDGLMLEGENIVGAARKAIIRHDFSAVLTVFPILRHLQQN 1159
++IPEHHQKKTFDSLIQDALDGLMLEGENIV AARKAIIRHDFS VLTVFPILRHL+Q
Sbjct: 301 MEIIPEHHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQT 360
Query: 1160 KPEF 1171
KPEF
Sbjct: 361 KPEF 364
>ref|NP_058553.2| exocyst complex component 7 isoform 1 [Mus musculus].
Length = 697
Score = 655 bits (1690), Expect = 0.0
Identities = 337/395 (85%), Positives = 352/395 (89%), Gaps = 31/395 (7%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLT+NMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTRNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTE+IIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVL+LDLIS +D+L
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLLLDLISADDEL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
EV ++V LEHLPESVL+DV+RI+RWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK
Sbjct: 181 EVQEDVVLEHLPESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPG------------------------------ 889
GVPYSPAIPNKRKDTPTKKP+KRPG
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPIKRPGTIRKAQNLLKQYSQHGLDGKKGGSNLIPLE 300
Query: 890 -RDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGE 1066
RDDMLDVETDAYIHCVSAFVKLAQSEY+LL ++IPEHHQKKTFDSLIQDALDGLMLEGE
Sbjct: 301 GRDDMLDVETDAYIHCVSAFVKLAQSEYRLLMEIIPEHHQKKTFDSLIQDALDGLMLEGE 360
Query: 1067 NIVGAARKAIIRHDFSAVLTVFPILRHLQQNKPEF 1171
NIV AARKAIIRHDFS VLTVFPILRHL+Q KPEF
Sbjct: 361 NIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEF 395
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,764,456
Number of extensions: 894177
Number of successful extensions: 4135
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003743
(1172 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358009.1| PREDICTED: exocyst complex component 7-like ... 699 0.0
Alignment gi|XP_003358010.1| PREDICTED: exocyst complex component 7-like ... 684 0.0
Alignment gi|XP_003358008.1| PREDICTED: exocyst complex component 7-like ... 683 0.0
Alignment gi|XP_003131248.2| PREDICTED: exocyst complex component 7 [Sus ... 655 0.0
Alignment gi|XP_003358011.1| PREDICTED: exocyst complex component 7-like ... 655 0.0
Alignment gi|XP_003358012.1| PREDICTED: exocyst complex component 7-like ... 606 e-174
>ref|XP_003358009.1| PREDICTED: exocyst complex component 7-like isoform 2 [Sus scrofa].
Length = 653
Score = 699 bits (1805), Expect = 0.0
Identities = 356/364 (97%), Positives = 357/364 (98%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK
Sbjct: 181 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL 979
GVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGRDDMLDVETDAYIHCVSAFVKLAQSEYQLL 300
Query: 980 TDVIPEHHQKKTFDSLIQDALDGLMLEGENIVGAARKAIIRHDFSAVLTVFPILRHLQQN 1159
TDVIPEHHQKKTFDSLIQDALDGLMLEGENIV AARKAIIRHDFSAVLTVFPILRHL+Q
Sbjct: 301 TDVIPEHHQKKTFDSLIQDALDGLMLEGENIVAAARKAIIRHDFSAVLTVFPILRHLKQT 360
Query: 1160 KPEF 1171
KPEF
Sbjct: 361 KPEF 364
>ref|XP_003358010.1| PREDICTED: exocyst complex component 7-like isoform 3 [Sus scrofa].
Length = 676
Score = 684 bits (1766), Expect = 0.0
Identities = 355/387 (91%), Positives = 356/387 (91%), Gaps = 23/387 (5%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK
Sbjct: 181 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPG-----------------------RDDMLDV 910
GVPYSPAIPNKRKDTPTKKPVKRPG DDMLDV
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGHQHDFRVKHLSEAPTDKHGPLAVEDDMLDV 300
Query: 911 ETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGENIVGAARK 1090
ETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGENIV AARK
Sbjct: 301 ETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGENIVAAARK 360
Query: 1091 AIIRHDFSAVLTVFPILRHLQQNKPEF 1171
AIIRHDFSAVLTVFPILRHL+Q KPEF
Sbjct: 361 AIIRHDFSAVLTVFPILRHLKQTKPEF 387
>ref|XP_003358008.1| PREDICTED: exocyst complex component 7-like isoform 1 [Sus scrofa].
Length = 684
Score = 683 bits (1763), Expect = 0.0
Identities = 356/395 (90%), Positives = 357/395 (90%), Gaps = 31/395 (7%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK
Sbjct: 181 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPG------------------------------ 889
GVPYSPAIPNKRKDTPTKKPVKRPG
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGTIRKAQNLLKQYSQHGLDGKKGGSNLIPLE 300
Query: 890 -RDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGE 1066
RDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGE
Sbjct: 301 GRDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQKKTFDSLIQDALDGLMLEGE 360
Query: 1067 NIVGAARKAIIRHDFSAVLTVFPILRHLQQNKPEF 1171
NIV AARKAIIRHDFSAVLTVFPILRHL+Q KPEF
Sbjct: 361 NIVAAARKAIIRHDFSAVLTVFPILRHLKQTKPEF 395
>ref|XP_003131248.2| PREDICTED: exocyst complex component 7 [Sus scrofa].
Length = 717
Score = 655 bits (1691), Expect = 0.0
Identities = 350/418 (83%), Positives = 352/418 (84%), Gaps = 54/418 (12%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK
Sbjct: 181 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPG------------------------------ 889
GVPYSPAIPNKRKDTPTKKPVKRPG
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGTIRKAQNLLKQYSQHGLDGKKGGSNLIPLE 300
Query: 890 -----------------RDDMLDVETD-------AYIHCVSAFVKLAQSEYQLLTDVIPE 997
+ L VE D AYIHCVSAFVKLAQSEYQLLTDVIPE
Sbjct: 301 GHQHDFRVKHLSEAPTDKHGPLAVEDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPE 360
Query: 998 HHQKKTFDSLIQDALDGLMLEGENIVGAARKAIIRHDFSAVLTVFPILRHLQQNKPEF 1171
HHQKKTFDSLIQDALDGLMLEGENIV AARKAIIRHDFSAVLTVFPILRHL+Q KPEF
Sbjct: 361 HHQKKTFDSLIQDALDGLMLEGENIVAAARKAIIRHDFSAVLTVFPILRHLKQTKPEF 418
>ref|XP_003358011.1| PREDICTED: exocyst complex component 7-like isoform 4 [Sus scrofa].
Length = 707
Score = 655 bits (1691), Expect = 0.0
Identities = 350/418 (83%), Positives = 352/418 (84%), Gaps = 54/418 (12%)
Frame = +2
Query: 80 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 259
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI
Sbjct: 1 MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSI 60
Query: 260 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 439
IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ
Sbjct: 61 IPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERIIREGPTGRLEEYLGSMAKIQ 120
Query: 440 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 619
KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL
Sbjct: 121 KAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLILDLISGEDDL 180
Query: 620 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 799
EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK
Sbjct: 181 EVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRK 240
Query: 800 XXXXXGVPYSPAIPNKRKDTPTKKPVKRPG------------------------------ 889
GVPYSPAIPNKRKDTPTKKPVKRPG
Sbjct: 241 SSSSSGVPYSPAIPNKRKDTPTKKPVKRPGTIRKAQNLLKQYSQHGLDGKKGGSNLIPLE 300
Query: 890 -----------------RDDMLDVETD-------AYIHCVSAFVKLAQSEYQLLTDVIPE 997
+ L VE D AYIHCVSAFVKLAQSEYQLLTDVIPE
Sbjct: 301 GHQHDFRVKHLSEAPTDKHGPLAVEDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPE 360
Query: 998 HHQKKTFDSLIQDALDGLMLEGENIVGAARKAIIRHDFSAVLTVFPILRHLQQNKPEF 1171
HHQKKTFDSLIQDALDGLMLEGENIV AARKAIIRHDFSAVLTVFPILRHL+Q KPEF
Sbjct: 361 HHQKKTFDSLIQDALDGLMLEGENIVAAARKAIIRHDFSAVLTVFPILRHLKQTKPEF 418
>ref|XP_003358012.1| PREDICTED: exocyst complex component 7-like isoform 5 [Sus scrofa].
Length = 656
Score = 606 bits (1562), Expect = e-174
Identities = 315/354 (88%), Positives = 316/354 (89%), Gaps = 31/354 (8%)
Frame = +2
Query: 203 MVSILSSFESRLMKLENSIIPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERII 382
MVSILSSFESRLMKLENSIIPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERII
Sbjct: 1 MVSILSSFESRLMKLENSIIPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTERII 60
Query: 383 REGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRH 562
REGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRH
Sbjct: 61 REGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRH 120
Query: 563 SKVVSPVLILDLISGEDDLEVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQ 742
SKVVSPVLILDLISGEDDLEVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQ
Sbjct: 121 SKVVSPVLILDLISGEDDLEVPDEVPLEHLPESVLQDVIRIARWLVEYGRNQDFMNVYYQ 180
Query: 743 IRSSQLDRSIKGLKEHFRKXXXXXGVPYSPAIPNKRKDTPTKKPVKRPG----------- 889
IRSSQLDRSIKGLKEHFRK GVPYSPAIPNKRKDTPTKKPVKRPG
Sbjct: 181 IRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPVKRPGTIRKAQNLLKQ 240
Query: 890 --------------------RDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQK 1009
RDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQK
Sbjct: 241 YSQHGLDGKKGGSNLIPLEGRDDMLDVETDAYIHCVSAFVKLAQSEYQLLTDVIPEHHQK 300
Query: 1010 KTFDSLIQDALDGLMLEGENIVGAARKAIIRHDFSAVLTVFPILRHLQQNKPEF 1171
KTFDSLIQDALDGLMLEGENIV AARKAIIRHDFSAVLTVFPILRHL+Q KPEF
Sbjct: 301 KTFDSLIQDALDGLMLEGENIVAAARKAIIRHDFSAVLTVFPILRHLKQTKPEF 354
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,989,337
Number of extensions: 688194
Number of successful extensions: 3535
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3525
Number of HSP's successfully gapped: 8
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003743
(1172 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 436 e-119
>Sscrofa_Chr12
|| Length = 63588571
Score = 436 bits (220), Expect = e-119
Identities = 223/224 (99%)
Strand = Plus / Plus
Query: 496 gaagctgctgtttgaacgggggaaggagtcactggagtctgagttccgcagcctgatgac 555
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5244043 gaagctgctgtttgaacgggggaaggagtcgctggagtctgagttccgcagcctgatgac 5244102
Query: 556 ccggcacagcaaggtcgtgtcgcccgtgctcatcctggatctgatcagtggcgaggacga 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244103 ccggcacagcaaggtcgtgtcgcccgtgctcatcctggatctgatcagtggcgaggacga 5244162
Query: 616 cctggaggtgccggacgaggtgcccctggagcacctgcccgagagcgtgctgcaggacgt 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244163 cctggaggtgccggacgaggtgcccctggagcacctgcccgagagcgtgctgcaggacgt 5244222
Query: 676 gatccgcatcgcccgctggctggtggaatacggccgcaaccaag 719
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244223 gatccgcatcgcccgctggctggtggaatacggccgcaaccaag 5244266
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 205 ggtgtctatcctgtcgtcctttgagagtcgcctcatgaagctggagaattccatcatccc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238422 ggtgtctatcctgtcgtcctttgagagtcgcctcatgaagctggagaattccatcatccc 5238481
Query: 265 cgtgcacaaacagacggagaacctgcagcggctgcaggagaatgttgagaagacgctgtc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238482 cgtgcacaaacagacggagaacctgcagcggctgcaggagaatgttgagaagacgctgtc 5238541
Query: 325 ctgtctggaccacgtcattagctactaccatgtggccagtgacactgagaggatcatcag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238542 ctgtctggaccacgtcattagctactaccatgtggccagtgacactgagaggatcatcag 5238601
Query: 385 ggaggg 390
||||||
Sbjct: 5238602 ggaggg 5238607
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 718 agatttcatgaacgtctactaccagatccgctcgagccagctggaccgctccatcaaagg 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247046 agatttcatgaacgtctactaccagatccgctcgagccagctggaccgctccatcaaagg 5247105
Query: 778 cctgaaggagcacttccggaagagcagttcttcctctggggttccctactcccccgccat 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247106 cctgaaggagcacttccggaagagcagttcttcctctggggttccctactcccccgccat 5247165
Query: 838 ccccaacaagaggaaagacacacccaccaagaagccagtcaagcggccagg 888
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247166 ccccaacaagaggaaagacacacccaccaagaagccagtcaagcggccagg 5247216
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 884 ccaggaagagacgacatgctggacgtggagaccgacgcctacatccactgcgtcagcgcc 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252923 ccaggaagagacgacatgctggacgtggagaccgacgcctacatccactgcgtcagcgcc 5252982
Query: 944 ttcgtcaagctggcccagagcgagtaccagctgctgaccgacgtcatccccgagcaccat 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252983 ttcgtcaagctggcccagagcgagtaccagctgctgaccgacgtcatccccgagcaccat 5253042
Query: 1004 cagaaaaagaccttcgactctttgatccagg 1034
|||||||||||||||||||||||||||||||
Sbjct: 5253043 cagaaaaagaccttcgactctttgatccagg 5253073
Score = 240 bits (121), Expect = 1e-60
Identities = 133/137 (97%)
Strand = Plus / Plus
Query: 1031 caggatgccctggacgggctgatgctggaaggggagaacattgtgggcgccgcccgcaag 1090
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5253342 caggatgccctggacgggctgatgctggaaggggagaacattgtggccgccgcccgcaag 5253401
Query: 1091 gccatcatccggcacgacttctcggccgtgctcaccgtcttccccatcctgcggcacctt 1150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5253402 gccatcatccggcacgacttctcggccgtgctcaccgtcttccccatcctgcggcacctc 5253461
Query: 1151 cagcagaacaagccgga 1167
|||||| |||||||||
Sbjct: 5253462 aagcagaccaagccgga 5253478
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 26 gagagggtcagctgggacgaggtactgggcagtgggagtcgcagagtcgaagccatgatc 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5235904 gagagggtcagctgggacgaggtactgggcagtgggagtcgcagagtcgaagccatgatc 5235963
Query: 86 cccccgcaggaggcgtccgcccggcggcgggagatcgaggacaagctgaagcagg 140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5235964 cccccgcaggaggcgtccgcccggcggcgggagatcgaggacaagctgaagcagg 5236018
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 390 gccccacagggaggctggaggagtacctgggaagcatggccaagattcagaaggctgtgg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238803 gccccacagggaggctggaggagtacctgggaagcatggccaagattcagaaggctgtgg 5238862
Query: 450 agtatttccaggacaacagcccagacagcccagagctcaacaaagtg 496
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238863 agtatttccaggacaacagcccagacagcccagagctcaacaaagtg 5238909
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 137 caggaggaggagacgctgtccttcatccgagacagtctggagaagagcgaccagctcacc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5236205 caggaggaggagacgctgtccttcatccgagacagtctggagaagagcgaccagctcacc 5236264
Query: 197 aagaacatggtg 208
||||||||||||
Sbjct: 5236265 aagaacatggtg 5236276
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,363,874
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 8
Length of query: 1172
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1151
Effective length of database: 2,808,413,156
Effective search space: 3232483542556
Effective search space used: 3232483542556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)