Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003746
(1512 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002696039.1| PREDICTED: Coenzyme A synthase [Bos taurus]. 774 0.0
Alignment gi|XP_872473.1| PREDICTED: Coenzyme A synthase isoform 1 [Bos t... 774 0.0
Alignment gi|XP_002702251.1| PREDICTED: bifunctional phosphopantetheine a... 772 0.0
Alignment gi|NP_001071349.1| dephospho-CoA kinase domain-containing prote... 70 6e-12
>ref|XP_002696039.1| PREDICTED: Coenzyme A synthase [Bos taurus].
Length = 562
Score = 774 bits (1998), Expect(2) = 0.0
Identities = 388/433 (89%), Positives = 401/433 (92%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPL SL PRLAPIL+SAARLVNHTLYVHLQPGM+LGGPAQPQSSPVQA
Sbjct: 1 MAVFRSGLLVLTTPLTSLAPRLAPILSSAARLVNHTLYVHLQPGMSLGGPAQPQSSPVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKSFLPPLPSSVQNLAHPPEVVLTDFQTL 441
TFEV+DFITHLYAGAD+HRHLDVRILLTNIRTKS LPPLP+SVQNLAHPPEVVLTDFQTL
Sbjct: 61 TFEVLDFITHLYAGADVHRHLDVRILLTNIRTKSCLPPLPTSVQNLAHPPEVVLTDFQTL 120
Query: 442 DGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPVA 621
DGSQYNP KQQLERYATSCYSCCPQLSSVLLYPDYGP + P L V LPSTIRP SPVA
Sbjct: 121 DGSQYNPAKQQLERYATSCYSCCPQLSSVLLYPDYGPAVSPAGSLGVHLPSTIRPTSPVA 180
Query: 622 RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXXX 801
RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVAD
Sbjct: 181 RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPELL 240
Query: 802 QPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF 981
QPYTERVEHLSEFLVDIKPSL+FD+IPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF
Sbjct: 241 QPYTERVEHLSEFLVDIKPSLTFDIIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF 300
Query: 982 RLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYVI 1161
RLEN LEELTLYQIQLLKDLN KENEEDKVSSSSFRQQMLGNLLRP +KRPELPPG YVI
Sbjct: 301 RLENDLEELTLYQIQLLKDLNHKENEEDKVSSSSFRQQMLGNLLRPPYKRPELPPGFYVI 360
Query: 1162 GLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGTI 1341
GLTG+SGSGKSSVAQRLKGLGAY+IDSD LGHR+YAPGGPAYQPVVEAFGTDILHKDG I
Sbjct: 361 GLTGISGSGKSSVAQRLKGLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGII 420
Query: 1342 NRKVLSSRVFGNR 1380
NRKVL SRVFGN+
Sbjct: 421 NRKVLGSRVFGNK 433
Score = 75.1 bits (183), Expect(2) = 0.0
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WPVIAKLA E +D AVAEGKRVCVI+AA+LLEAG
Sbjct: 433 KKQLKILTDIMWPVIAKLAREEMDQAVAEGKRVCVIDAAMLLEAG 477
>ref|XP_872473.1| PREDICTED: Coenzyme A synthase isoform 1 [Bos taurus].
Length = 562
Score = 774 bits (1998), Expect(2) = 0.0
Identities = 388/433 (89%), Positives = 401/433 (92%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPL SL PRLAPIL+SAARLVNHTLYVHLQPGM+LGGPAQPQSSPVQA
Sbjct: 1 MAVFRSGLLVLTTPLTSLAPRLAPILSSAARLVNHTLYVHLQPGMSLGGPAQPQSSPVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKSFLPPLPSSVQNLAHPPEVVLTDFQTL 441
TFEV+DFITHLYAGAD+HRHLDVRILLTNIRTKS LPPLP+SVQNLAHPPEVVLTDFQTL
Sbjct: 61 TFEVLDFITHLYAGADVHRHLDVRILLTNIRTKSCLPPLPTSVQNLAHPPEVVLTDFQTL 120
Query: 442 DGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPVA 621
DGSQYNP KQQLERYATSCYSCCPQLSSVLLYPDYGP + P L V LPSTIRP SPVA
Sbjct: 121 DGSQYNPAKQQLERYATSCYSCCPQLSSVLLYPDYGPAVSPAGSLGVHLPSTIRPTSPVA 180
Query: 622 RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXXX 801
RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVAD
Sbjct: 181 RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPELL 240
Query: 802 QPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF 981
QPYTERVEHLSEFLVDIKPSL+FD+IPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF
Sbjct: 241 QPYTERVEHLSEFLVDIKPSLTFDIIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF 300
Query: 982 RLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYVI 1161
RLEN LEELTLYQIQLLKDLN KENEEDKVSSSSFRQQMLGNLLRP +KRPELPPG YVI
Sbjct: 301 RLENDLEELTLYQIQLLKDLNHKENEEDKVSSSSFRQQMLGNLLRPPYKRPELPPGFYVI 360
Query: 1162 GLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGTI 1341
GLTG+SGSGKSSVAQRLKGLGAY+IDSD LGHR+YAPGGPAYQPVVEAFGTDILHKDG I
Sbjct: 361 GLTGISGSGKSSVAQRLKGLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGII 420
Query: 1342 NRKVLSSRVFGNR 1380
NRKVL SRVFGN+
Sbjct: 421 NRKVLGSRVFGNK 433
Score = 75.1 bits (183), Expect(2) = 0.0
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WPVIAKLA E +D AVAEGKRVCVI+AA+LLEAG
Sbjct: 433 KKQLKILTDIMWPVIAKLAREEMDQAVAEGKRVCVIDAAMLLEAG 477
>ref|XP_002702251.1| PREDICTED: bifunctional phosphopantetheine adenylyl transferase /
dephospho CoA kinase-like [Bos taurus].
Length = 562
Score = 772 bits (1994), Expect(2) = 0.0
Identities = 387/433 (89%), Positives = 401/433 (92%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPL SL PRLAPIL+SAARLVNHTLYVHLQPGM+LGGPAQPQSSPVQA
Sbjct: 1 MAVFRSGLLVLTTPLTSLAPRLAPILSSAARLVNHTLYVHLQPGMSLGGPAQPQSSPVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKSFLPPLPSSVQNLAHPPEVVLTDFQTL 441
TFEV+DFITHLYAGAD+HRHLDVRILLTNIRTKS LPPLP+SVQNLAHPPEVVLTDFQTL
Sbjct: 61 TFEVLDFITHLYAGADVHRHLDVRILLTNIRTKSCLPPLPTSVQNLAHPPEVVLTDFQTL 120
Query: 442 DGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPVA 621
DGSQYNP KQQLERYATSCYSCCP+LSSVLLYPDYGP + P L V LPSTIRP SPVA
Sbjct: 121 DGSQYNPAKQQLERYATSCYSCCPKLSSVLLYPDYGPAVSPAGSLGVHLPSTIRPTSPVA 180
Query: 622 RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXXX 801
RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVAD
Sbjct: 181 RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPELL 240
Query: 802 QPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF 981
QPYTERVEHLSEFLVDIKPSL+FD+IPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF
Sbjct: 241 QPYTERVEHLSEFLVDIKPSLTFDIIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF 300
Query: 982 RLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYVI 1161
RLEN LEELTLYQIQLLKDLN KENEEDKVSSSSFRQQMLGNLLRP +KRPELPPG YVI
Sbjct: 301 RLENDLEELTLYQIQLLKDLNHKENEEDKVSSSSFRQQMLGNLLRPPYKRPELPPGFYVI 360
Query: 1162 GLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGTI 1341
GLTG+SGSGKSSVAQRLKGLGAY+IDSD LGHR+YAPGGPAYQPVVEAFGTDILHKDG I
Sbjct: 361 GLTGISGSGKSSVAQRLKGLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGII 420
Query: 1342 NRKVLSSRVFGNR 1380
NRKVL SRVFGN+
Sbjct: 421 NRKVLGSRVFGNK 433
Score = 75.1 bits (183), Expect(2) = 0.0
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WPVIAKLA E +D AVAEGKRVCVI+AA+LLEAG
Sbjct: 433 KKQLKILTDIMWPVIAKLAREEMDQAVAEGKRVCVIDAAMLLEAG 477
>ref|NP_001071349.1| dephospho-CoA kinase domain-containing protein [Bos taurus].
Length = 135
Score = 69.7 bits (169), Expect = 6e-12
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +1
Query: 1153 YVIGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKD 1332
+++GLTG SGKSSV Q + LG VID D + PG PA++ +VEAFGT++L ++
Sbjct: 2 FLVGLTGGIASGKSSVIQVFQQLGCAVIDVDIIARHIVQPGYPAHRRIVEAFGTEVLLEN 61
Query: 1333 GTINRKVLSSRVF 1371
G I+RKVL +F
Sbjct: 62 GDIDRKVLGDLIF 74
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,693,349
Number of extensions: 2066756
Number of successful extensions: 9690
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9565
Number of HSP's successfully gapped: 7
Length of query: 504
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 397
Effective length of database: 14,140,958
Effective search space: 5613960326
Effective search space used: 5613960326
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003746
(1512 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537637.2| PREDICTED: similar to Bifunctional coenzyme A s... 746 0.0
Alignment gi|XP_858728.1| PREDICTED: similar to Bifunctional coenzyme A s... 711 0.0
>ref|XP_537637.2| PREDICTED: similar to Bifunctional coenzyme A synthase (CoA synthase)
(NBP) (POV-2) isoform 1 [Canis familiaris].
Length = 560
Score = 746 bits (1927), Expect(2) = 0.0
Identities = 376/434 (86%), Positives = 398/434 (91%), Gaps = 1/434 (0%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPLASL PRLAPILTSAARLVNHTLYVHLQPGM+LGGPAQPQSS VQA
Sbjct: 1 MAVFRSGLLVLTTPLASLAPRLAPILTSAARLVNHTLYVHLQPGMSLGGPAQPQSSVVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKS-FLPPLPSSVQNLAHPPEVVLTDFQT 438
TFEV+DFITHLYAGAD+HRHLDVR+LLTNI KS FLPPL SSVQNLAHPPEVVLTDFQT
Sbjct: 61 TFEVLDFITHLYAGADVHRHLDVRVLLTNIGAKSAFLPPLSSSVQNLAHPPEVVLTDFQT 120
Query: 439 LDGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPV 618
LDGSQYNPVKQQLERYATSCYSCCPQL+SVLLYPDYGP LP +PLDV LPSTIRPASPV
Sbjct: 121 LDGSQYNPVKQQLERYATSCYSCCPQLASVLLYPDYGPEELPTEPLDVLLPSTIRPASPV 180
Query: 619 ARSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXX 798
ARS KQPVRG+ RGAVGGTFDRLHNAHKVLLSVAC+LAQEQLVVGVAD
Sbjct: 181 ARSPKQPVRGYHRGAVGGTFDRLHNAHKVLLSVACVLAQEQLVVGVADKDLLKSKLLPEL 240
Query: 799 XQPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNR 978
QPYTERVEHLSEFLVDIKPSL+FD+IPLLDPYGPAGS+PSLEFLVVSEETYRGGMAVNR
Sbjct: 241 LQPYTERVEHLSEFLVDIKPSLTFDIIPLLDPYGPAGSNPSLEFLVVSEETYRGGMAVNR 300
Query: 979 FRLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYV 1158
FRLEN LEEL LYQIQLLKD + ++NEEDKVSSSSFRQ+MLGNLL+P +KRPELP YV
Sbjct: 301 FRLENDLEELALYQIQLLKDQSHQDNEEDKVSSSSFRQRMLGNLLQPPYKRPELPTQLYV 360
Query: 1159 IGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGT 1338
IGLTG+SGSGKSSVAQRLKGLGA++IDSD LGHR+YAPGGPAYQPVVEAFGTDILHKDG
Sbjct: 361 IGLTGISGSGKSSVAQRLKGLGAFIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGI 420
Query: 1339 INRKVLSSRVFGNR 1380
INRKVL SRVFGN+
Sbjct: 421 INRKVLGSRVFGNK 434
Score = 73.2 bits (178), Expect(2) = 0.0
Identities = 36/45 (80%), Positives = 41/45 (91%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WPVIAKLA E +D AVAEGK VCVI+AA+LLEAG
Sbjct: 434 KKQLKILTDIMWPVIAKLAREEMDQAVAEGKHVCVIDAAMLLEAG 478
>ref|XP_858728.1| PREDICTED: similar to Bifunctional coenzyme A synthase (CoA synthase)
(NBP) (POV-2) isoform 2 [Canis familiaris].
Length = 542
Score = 711 bits (1835), Expect(2) = 0.0
Identities = 363/434 (83%), Positives = 384/434 (88%), Gaps = 1/434 (0%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPLASL PRLAPILTSAARLVNHTLYVHLQPGM+LGGPAQPQSS VQA
Sbjct: 1 MAVFRSGLLVLTTPLASLAPRLAPILTSAARLVNHTLYVHLQPGMSLGGPAQPQSSVVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKS-FLPPLPSSVQNLAHPPEVVLTDFQT 438
TFEV+DFITHLYAGAD+HRHLDVR+LLTNI KS FLPPL SSVQNLAHPPEVVLTDFQT
Sbjct: 61 TFEVLDFITHLYAGADVHRHLDVRVLLTNIGAKSAFLPPLSSSVQNLAHPPEVVLTDFQT 120
Query: 439 LDGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPV 618
LDGSQYNPVKQQLERYATSCYSCCPQL+SVLLYPDYGP ASPV
Sbjct: 121 LDGSQYNPVKQQLERYATSCYSCCPQLASVLLYPDYGP------------------ASPV 162
Query: 619 ARSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXX 798
ARS KQPVRG+ RGAVGGTFDRLHNAHKVLLSVAC+LAQEQLVVGVAD
Sbjct: 163 ARSPKQPVRGYHRGAVGGTFDRLHNAHKVLLSVACVLAQEQLVVGVADKDLLKSKLLPEL 222
Query: 799 XQPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNR 978
QPYTERVEHLSEFLVDIKPSL+FD+IPLLDPYGPAGS+PSLEFLVVSEETYRGGMAVNR
Sbjct: 223 LQPYTERVEHLSEFLVDIKPSLTFDIIPLLDPYGPAGSNPSLEFLVVSEETYRGGMAVNR 282
Query: 979 FRLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYV 1158
FRLEN LEEL LYQIQLLKD + ++NEEDKVSSSSFRQ+MLGNLL+P +KRPELP YV
Sbjct: 283 FRLENDLEELALYQIQLLKDQSHQDNEEDKVSSSSFRQRMLGNLLQPPYKRPELPTQLYV 342
Query: 1159 IGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGT 1338
IGLTG+SGSGKSSVAQRLKGLGA++IDSD LGHR+YAPGGPAYQPVVEAFGTDILHKDG
Sbjct: 343 IGLTGISGSGKSSVAQRLKGLGAFIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGI 402
Query: 1339 INRKVLSSRVFGNR 1380
INRKVL SRVFGN+
Sbjct: 403 INRKVLGSRVFGNK 416
Score = 73.2 bits (178), Expect(2) = 0.0
Identities = 36/45 (80%), Positives = 41/45 (91%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WPVIAKLA E +D AVAEGK VCVI+AA+LLEAG
Sbjct: 416 KKQLKILTDIMWPVIAKLAREEMDQAVAEGKHVCVIDAAMLLEAG 460
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,324,156
Number of extensions: 2125402
Number of successful extensions: 10783
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10299
Number of HSP's successfully gapped: 4
Length of query: 504
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 397
Effective length of database: 15,307,552
Effective search space: 6077098144
Effective search space used: 6077098144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003746
(1512 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035997.2| bifunctional coenzyme A synthase isoform c [... 748 0.0
Alignment gi|NP_001035995.1| bifunctional coenzyme A synthase isoform a [... 747 0.0
Alignment gi|NP_001035994.1| bifunctional coenzyme A synthase isoform a [... 747 0.0
Alignment gi|NP_079509.5| bifunctional coenzyme A synthase isoform a [Hom... 747 0.0
Alignment gi|NP_001035996.1| bifunctional coenzyme A synthase isoform b [... 238 6e-79
Alignment gi|NP_001122103.1| dephospho-CoA kinase domain-containing prote... 70 4e-12
Alignment gi|NP_079095.3| dephospho-CoA kinase domain-containing protein ... 70 4e-12
>ref|NP_001035997.2| bifunctional coenzyme A synthase isoform c [Homo sapiens].
Length = 593
Score = 748 bits (1932), Expect(2) = 0.0
Identities = 384/459 (83%), Positives = 406/459 (88%), Gaps = 2/459 (0%)
Frame = +1
Query: 10 RVAAGEDSAVVHA-EPKSGGLSRAIMAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNH 186
R+ A AV A P + MAVFRSGLLVLTTPLASL PRLA ILTSAARLVNH
Sbjct: 5 RLRAQPRGAVYQAPSPPPAPVGLGSMAVFRSGLLVLTTPLASLAPRLASILTSAARLVNH 64
Query: 187 TLYVHLQPGMNLGGPAQPQSSPVQATFEVIDFITHLYAGADLHRHLDVRILLTNIRTKS- 363
TLYVHLQPGM+L GPAQPQSSPVQATFEV+DFITHLYAGAD+HRHLDVRILLTNIRTKS
Sbjct: 65 TLYVHLQPGMSLEGPAQPQSSPVQATFEVLDFITHLYAGADVHRHLDVRILLTNIRTKST 124
Query: 364 FLPPLPSSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPD 543
FLPPLP+SVQNLAHPPEVVLTDFQTLDGSQYNPVKQQL RYATSCYSCCP+L+SVLLY D
Sbjct: 125 FLPPLPTSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLVRYATSCYSCCPRLASVLLYSD 184
Query: 544 YGPGMLPVQPLDVPLPSTIRPASPVARSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVAC 723
YG G +PV+PLDVPLPSTIRPASPVA S KQPVRG+ RGAVGGTFDRLHNAHKVLLSVAC
Sbjct: 185 YGIGEVPVEPLDVPLPSTIRPASPVAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLLSVAC 244
Query: 724 ILAQEQLVVGVADXXXXXXXXXXXXXQPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGP 903
ILAQEQLVVGVAD QPYTERVEHLSEFLVDIKPSL+FD+IPLLDPYGP
Sbjct: 245 ILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLDPYGP 304
Query: 904 AGSDPSLEFLVVSEETYRGGMAVNRFRLENGLEELTLYQIQLLKDLNPKENEEDKVSSSS 1083
AGSDPSLEFLVVSEETYRGGMA+NRFRLEN LEEL LYQIQLLKDL ENEEDKVSSSS
Sbjct: 305 AGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLLKDLRHTENEEDKVSSSS 364
Query: 1084 FRQQMLGNLLRPSHKRPELPPGCYVIGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRS 1263
FRQ+MLGNLLRP ++RPELP YVIGLTG+SGSGKSS+AQRLKGLGA+VIDSD LGHR+
Sbjct: 365 FRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHLGHRA 424
Query: 1264 YAPGGPAYQPVVEAFGTDILHKDGTINRKVLSSRVFGNR 1380
YAPGGPAYQPVVEAFGTDILHKDG INRKVL SRVFGN+
Sbjct: 425 YAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNK 463
Score = 75.9 bits (185), Expect(2) = 0.0
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WP+IAKLA E +D AVAEGKRVCVI+AAVLLEAG
Sbjct: 463 KKQLKILTDIMWPIIAKLAREEMDRAVAEGKRVCVIDAAVLLEAG 507
>ref|NP_001035995.1| bifunctional coenzyme A synthase isoform a [Homo sapiens].
Length = 564
Score = 747 bits (1929), Expect(2) = 0.0
Identities = 378/434 (87%), Positives = 398/434 (91%), Gaps = 1/434 (0%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPLASL PRLA ILTSAARLVNHTLYVHLQPGM+L GPAQPQSSPVQA
Sbjct: 1 MAVFRSGLLVLTTPLASLAPRLASILTSAARLVNHTLYVHLQPGMSLEGPAQPQSSPVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKS-FLPPLPSSVQNLAHPPEVVLTDFQT 438
TFEV+DFITHLYAGAD+HRHLDVRILLTNIRTKS FLPPLP+SVQNLAHPPEVVLTDFQT
Sbjct: 61 TFEVLDFITHLYAGADVHRHLDVRILLTNIRTKSTFLPPLPTSVQNLAHPPEVVLTDFQT 120
Query: 439 LDGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPV 618
LDGSQYNPVKQQL RYATSCYSCCP+L+SVLLY DYG G +PV+PLDVPLPSTIRPASPV
Sbjct: 121 LDGSQYNPVKQQLVRYATSCYSCCPRLASVLLYSDYGIGEVPVEPLDVPLPSTIRPASPV 180
Query: 619 ARSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXX 798
A S KQPVRG+ RGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVAD
Sbjct: 181 AGSPKQPVRGYYRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPEL 240
Query: 799 XQPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNR 978
QPYTERVEHLSEFLVDIKPSL+FD+IPLLDPYGPAGSDPSLEFLVVSEETYRGGMA+NR
Sbjct: 241 LQPYTERVEHLSEFLVDIKPSLTFDVIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAINR 300
Query: 979 FRLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYV 1158
FRLEN LEEL LYQIQLLKDL ENEEDKVSSSSFRQ+MLGNLLRP ++RPELP YV
Sbjct: 301 FRLENDLEELALYQIQLLKDLRHTENEEDKVSSSSFRQRMLGNLLRPPYERPELPTCLYV 360
Query: 1159 IGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGT 1338
IGLTG+SGSGKSS+AQRLKGLGA+VIDSD LGHR+YAPGGPAYQPVVEAFGTDILHKDG
Sbjct: 361 IGLTGISGSGKSSIAQRLKGLGAFVIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGI 420
Query: 1339 INRKVLSSRVFGNR 1380
INRKVL SRVFGN+
Sbjct: 421 INRKVLGSRVFGNK 434
Score = 75.9 bits (185), Expect(2) = 0.0
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WP+IAKLA E +D AVAEGKRVCVI+AAVLLEAG
Sbjct: 434 KKQLKILTDIMWPIIAKLAREEMDRAVAEGKRVCVIDAAVLLEAG 478
>ref|NP_001035994.1| bifunctional coenzyme A synthase isoform a [Homo sapiens].
Length = 564
Score = 747 bits (1929), Expect(2) = 0.0
Identities = 378/434 (87%), Positives = 398/434 (91%), Gaps = 1/434 (0%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPLASL PRLA ILTSAARLVNHTLYVHLQPGM+L GPAQPQSSPVQA
Sbjct: 1 MAVFRSGLLVLTTPLASLAPRLASILTSAARLVNHTLYVHLQPGMSLEGPAQPQSSPVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKS-FLPPLPSSVQNLAHPPEVVLTDFQT 438
TFEV+DFITHLYAGAD+HRHLDVRILLTNIRTKS FLPPLP+SVQNLAHPPEVVLTDFQT
Sbjct: 61 TFEVLDFITHLYAGADVHRHLDVRILLTNIRTKSTFLPPLPTSVQNLAHPPEVVLTDFQT 120
Query: 439 LDGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPV 618
LDGSQYNPVKQQL RYATSCYSCCP+L+SVLLY DYG G +PV+PLDVPLPSTIRPASPV
Sbjct: 121 LDGSQYNPVKQQLVRYATSCYSCCPRLASVLLYSDYGIGEVPVEPLDVPLPSTIRPASPV 180
Query: 619 ARSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXX 798
A S KQPVRG+ RGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVAD
Sbjct: 181 AGSPKQPVRGYYRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPEL 240
Query: 799 XQPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNR 978
QPYTERVEHLSEFLVDIKPSL+FD+IPLLDPYGPAGSDPSLEFLVVSEETYRGGMA+NR
Sbjct: 241 LQPYTERVEHLSEFLVDIKPSLTFDVIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAINR 300
Query: 979 FRLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYV 1158
FRLEN LEEL LYQIQLLKDL ENEEDKVSSSSFRQ+MLGNLLRP ++RPELP YV
Sbjct: 301 FRLENDLEELALYQIQLLKDLRHTENEEDKVSSSSFRQRMLGNLLRPPYERPELPTCLYV 360
Query: 1159 IGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGT 1338
IGLTG+SGSGKSS+AQRLKGLGA+VIDSD LGHR+YAPGGPAYQPVVEAFGTDILHKDG
Sbjct: 361 IGLTGISGSGKSSIAQRLKGLGAFVIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGI 420
Query: 1339 INRKVLSSRVFGNR 1380
INRKVL SRVFGN+
Sbjct: 421 INRKVLGSRVFGNK 434
Score = 75.9 bits (185), Expect(2) = 0.0
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WP+IAKLA E +D AVAEGKRVCVI+AAVLLEAG
Sbjct: 434 KKQLKILTDIMWPIIAKLAREEMDRAVAEGKRVCVIDAAVLLEAG 478
>ref|NP_079509.5| bifunctional coenzyme A synthase isoform a [Homo sapiens].
Length = 564
Score = 747 bits (1929), Expect(2) = 0.0
Identities = 378/434 (87%), Positives = 398/434 (91%), Gaps = 1/434 (0%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPLASL PRLA ILTSAARLVNHTLYVHLQPGM+L GPAQPQSSPVQA
Sbjct: 1 MAVFRSGLLVLTTPLASLAPRLASILTSAARLVNHTLYVHLQPGMSLEGPAQPQSSPVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKS-FLPPLPSSVQNLAHPPEVVLTDFQT 438
TFEV+DFITHLYAGAD+HRHLDVRILLTNIRTKS FLPPLP+SVQNLAHPPEVVLTDFQT
Sbjct: 61 TFEVLDFITHLYAGADVHRHLDVRILLTNIRTKSTFLPPLPTSVQNLAHPPEVVLTDFQT 120
Query: 439 LDGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPV 618
LDGSQYNPVKQQL RYATSCYSCCP+L+SVLLY DYG G +PV+PLDVPLPSTIRPASPV
Sbjct: 121 LDGSQYNPVKQQLVRYATSCYSCCPRLASVLLYSDYGIGEVPVEPLDVPLPSTIRPASPV 180
Query: 619 ARSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXX 798
A S KQPVRG+ RGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVAD
Sbjct: 181 AGSPKQPVRGYYRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPEL 240
Query: 799 XQPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNR 978
QPYTERVEHLSEFLVDIKPSL+FD+IPLLDPYGPAGSDPSLEFLVVSEETYRGGMA+NR
Sbjct: 241 LQPYTERVEHLSEFLVDIKPSLTFDVIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAINR 300
Query: 979 FRLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYV 1158
FRLEN LEEL LYQIQLLKDL ENEEDKVSSSSFRQ+MLGNLLRP ++RPELP YV
Sbjct: 301 FRLENDLEELALYQIQLLKDLRHTENEEDKVSSSSFRQRMLGNLLRPPYERPELPTCLYV 360
Query: 1159 IGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGT 1338
IGLTG+SGSGKSS+AQRLKGLGA+VIDSD LGHR+YAPGGPAYQPVVEAFGTDILHKDG
Sbjct: 361 IGLTGISGSGKSSIAQRLKGLGAFVIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGI 420
Query: 1339 INRKVLSSRVFGNR 1380
INRKVL SRVFGN+
Sbjct: 421 INRKVLGSRVFGNK 434
Score = 75.9 bits (185), Expect(2) = 0.0
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WP+IAKLA E +D AVAEGKRVCVI+AAVLLEAG
Sbjct: 434 KKQLKILTDIMWPIIAKLAREEMDRAVAEGKRVCVIDAAVLLEAG 478
>ref|NP_001035996.1| bifunctional coenzyme A synthase isoform b [Homo sapiens].
Length = 269
Score = 238 bits (608), Expect(2) = 6e-79
Identities = 118/139 (84%), Positives = 127/139 (91%)
Frame = +1
Query: 964 MAVNRFRLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELP 1143
MA+NRFRLEN LEEL LYQIQLLKDL ENEEDKVSSSSFRQ+MLGNLLRP ++RPELP
Sbjct: 1 MAINRFRLENDLEELALYQIQLLKDLRHTENEEDKVSSSSFRQRMLGNLLRPPYERPELP 60
Query: 1144 PGCYVIGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDIL 1323
YVIGLTG+SGSGKSS+AQRLKGLGA+VIDSD LGHR+YAPGGPAYQPVVEAFGTDIL
Sbjct: 61 TCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHLGHRAYAPGGPAYQPVVEAFGTDIL 120
Query: 1324 HKDGTINRKVLSSRVFGNR 1380
HKDG INRKVL SRVFGN+
Sbjct: 121 HKDGIINRKVLGSRVFGNK 139
Score = 75.9 bits (185), Expect(2) = 6e-79
Identities = 37/45 (82%), Positives = 42/45 (93%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDI+WP+IAKLA E +D AVAEGKRVCVI+AAVLLEAG
Sbjct: 139 KKQLKILTDIMWPIIAKLAREEMDRAVAEGKRVCVIDAAVLLEAG 183
>ref|NP_001122103.1| dephospho-CoA kinase domain-containing protein [Homo sapiens].
Length = 231
Score = 70.5 bits (171), Expect = 4e-12
Identities = 35/73 (47%), Positives = 48/73 (65%)
Frame = +1
Query: 1153 YVIGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKD 1332
+++GLTG SGKSSV Q + LG VID D + PG PA++ +VE FGT++L ++
Sbjct: 2 FLVGLTGGIASGKSSVIQVFQQLGCAVIDVDVMARHVVQPGYPAHRRIVEVFGTEVLLEN 61
Query: 1333 GTINRKVLSSRVF 1371
G INRKVL +F
Sbjct: 62 GDINRKVLGDLIF 74
>ref|NP_079095.3| dephospho-CoA kinase domain-containing protein [Homo sapiens].
Length = 231
Score = 70.5 bits (171), Expect = 4e-12
Identities = 35/73 (47%), Positives = 48/73 (65%)
Frame = +1
Query: 1153 YVIGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKD 1332
+++GLTG SGKSSV Q + LG VID D + PG PA++ +VE FGT++L ++
Sbjct: 2 FLVGLTGGIASGKSSVIQVFQQLGCAVIDVDVMARHVVQPGYPAHRRIVEVFGTEVLLEN 61
Query: 1333 GTINRKVLSSRVF 1371
G INRKVL +F
Sbjct: 62 GDINRKVLGDLIF 74
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,825,808
Number of extensions: 2063575
Number of successful extensions: 9584
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 9342
Number of HSP's successfully gapped: 12
Length of query: 504
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 397
Effective length of database: 14,770,016
Effective search space: 5863696352
Effective search space used: 5863696352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003746
(1512 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082172.2| bifunctional coenzyme A synthase [Mus musculus]. 728 0.0
Alignment gi|NP_080827.2| dephospho-CoA kinase domain-containing protein ... 70 4e-12
>ref|NP_082172.2| bifunctional coenzyme A synthase [Mus musculus].
Length = 563
Score = 728 bits (1879), Expect(2) = 0.0
Identities = 363/433 (83%), Positives = 392/433 (90%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPLA+L RL PILTSA+RLVNHTLYVHLQPGMNLGGPAQPQ+SPVQA
Sbjct: 1 MAVFRSGLLVLTTPLATLAARLPPILTSASRLVNHTLYVHLQPGMNLGGPAQPQASPVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKSFLPPLPSSVQNLAHPPEVVLTDFQTL 441
TFEV+DFITHLY GADLHRHLDVRILLTNI+TKS P+ SSVQNLAHPPEVVLTDFQTL
Sbjct: 61 TFEVLDFITHLYTGADLHRHLDVRILLTNIQTKSTFLPVLSSVQNLAHPPEVVLTDFQTL 120
Query: 442 DGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPVA 621
DGSQYNPVKQQLERYATSCYSC PQL+SVLLYPDYG G LP++P + LPSTIRPASPVA
Sbjct: 121 DGSQYNPVKQQLERYATSCYSCSPQLASVLLYPDYGTGELPLEPPNALLPSTIRPASPVA 180
Query: 622 RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXXX 801
RS +QPVRG+ RGAVGGTFDRLHNAHKVLLSVAC+LAQEQLVVGVAD
Sbjct: 181 RSPRQPVRGYHRGAVGGTFDRLHNAHKVLLSVACVLAQEQLVVGVADKDLLKSKLLPELL 240
Query: 802 QPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF 981
QPY ERVEHL+EFLVDIKPSL+F+L+PLLDPYGPAGSDP+LEFLVVSEETYRGGMAVNRF
Sbjct: 241 QPYAERVEHLTEFLVDIKPSLTFELVPLLDPYGPAGSDPTLEFLVVSEETYRGGMAVNRF 300
Query: 982 RLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYVI 1161
RLENG EEL LYQIQLLKD + ENEEDKVSSSSFRQ++LGNLL+P ++RPELP G YV+
Sbjct: 301 RLENGKEELALYQIQLLKDQSHNENEEDKVSSSSFRQRILGNLLQPPNERPELPSGLYVL 360
Query: 1162 GLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGTI 1341
GLTG+SGSGKSSVAQRLK LGAY+IDSD LGHR+YAPGGPAYQPVVEAFGTDILHKDGTI
Sbjct: 361 GLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTI 420
Query: 1342 NRKVLSSRVFGNR 1380
NRKVL SRVFGN+
Sbjct: 421 NRKVLGSRVFGNK 433
Score = 70.5 bits (171), Expect(2) = 0.0
Identities = 34/45 (75%), Positives = 41/45 (91%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQ+KILTDIVWPVIAKLA E +D AVA+GK +CVI+AA+LLEAG
Sbjct: 433 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG 477
>ref|NP_080827.2| dephospho-CoA kinase domain-containing protein [Mus musculus].
Length = 231
Score = 70.1 bits (170), Expect = 4e-12
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +1
Query: 1153 YVIGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKD 1332
+++GLTG SGKSSV Q + LG VID D + PG PA++ +VEAFGT++L ++
Sbjct: 2 FLVGLTGGIASGKSSVIQVFQQLGCAVIDVDVIARHVVQPGYPAHRRIVEAFGTEVLLEN 61
Query: 1333 GTINRKVLSSRVF 1371
G I+RKVL +F
Sbjct: 62 GDIDRKVLGDLIF 74
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,290,188
Number of extensions: 1692058
Number of successful extensions: 7269
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7147
Number of HSP's successfully gapped: 3
Length of query: 504
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 398
Effective length of database: 12,433,743
Effective search space: 4948629714
Effective search space used: 4948629714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003746
(1512 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998954.1| bifunctional coenzyme A synthase [Sus scrofa]. 830 0.0
Alignment gi|XP_003131375.1| PREDICTED: dephospho-CoA kinase domain-conta... 70 3e-12
Alignment gi|XP_003131374.1| PREDICTED: dephospho-CoA kinase domain-conta... 70 3e-12
>ref|NP_998954.1| bifunctional coenzyme A synthase [Sus scrofa].
Length = 562
Score = 830 bits (2143), Expect(2) = 0.0
Identities = 416/433 (96%), Positives = 418/433 (96%)
Frame = +1
Query: 82 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 261
MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA
Sbjct: 1 MAVFRSGLLVLTTPLASLVPRLAPILTSAARLVNHTLYVHLQPGMNLGGPAQPQSSPVQA 60
Query: 262 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKSFLPPLPSSVQNLAHPPEVVLTDFQTL 441
TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKSFLPPLPSSVQNLAHPPEVVLTDFQTL
Sbjct: 61 TFEVIDFITHLYAGADLHRHLDVRILLTNIRTKSFLPPLPSSVQNLAHPPEVVLTDFQTL 120
Query: 442 DGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPVA 621
DGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPVA
Sbjct: 121 DGSQYNPVKQQLERYATSCYSCCPQLSSVLLYPDYGPGMLPVQPLDVPLPSTIRPASPVA 180
Query: 622 RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADXXXXXXXXXXXXX 801
RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVAD
Sbjct: 181 RSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPELL 240
Query: 802 QPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF 981
QPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF
Sbjct: 241 QPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRF 300
Query: 982 RLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPSHKRPELPPGCYVI 1161
RLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRP HKRPELPPGCYVI
Sbjct: 301 RLENGLEELTLYQIQLLKDLNPKENEEDKVSSSSFRQQMLGNLLRPPHKRPELPPGCYVI 360
Query: 1162 GLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGTI 1341
GLTG+SGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGTI
Sbjct: 361 GLTGISGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKDGTI 420
Query: 1342 NRKVLSSRVFGNR 1380
NRKVL SRVFGN+
Sbjct: 421 NRKVLGSRVFGNK 433
Score = 78.6 bits (192), Expect(2) = 0.0
Identities = 40/45 (88%), Positives = 42/45 (93%)
Frame = +3
Query: 1377 QKQLKILTDIVWPVIAKLAPERVDXAVAEGKRVCVINAAVLLEAG 1511
+KQLKILTDIVWPVIAKLA E VD AVAEGKRVCVI+AAVLLEAG
Sbjct: 433 KKQLKILTDIVWPVIAKLAREEVDQAVAEGKRVCVIDAAVLLEAG 477
>ref|XP_003131375.1| PREDICTED: dephospho-CoA kinase domain-containing protein-like
isoform 2 [Sus scrofa].
Length = 231
Score = 70.1 bits (170), Expect = 3e-12
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +1
Query: 1153 YVIGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKD 1332
+++GLTG SGKSSV Q L+ LG VID D + PG PA++ +VEAFGT++L ++
Sbjct: 2 FLVGLTGGIASGKSSVLQVLQQLGCAVIDVDVIARHVVQPGYPAHRRIVEAFGTEVLLEN 61
Query: 1333 GTINRKVLSSRVF 1371
G I+RK L +F
Sbjct: 62 GDIDRKALGDLIF 74
>ref|XP_003131374.1| PREDICTED: dephospho-CoA kinase domain-containing protein-like
isoform 1 [Sus scrofa].
Length = 231
Score = 70.1 bits (170), Expect = 3e-12
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +1
Query: 1153 YVIGLTGVSGSGKSSVAQRLKGLGAYVIDSDQLGHRSYAPGGPAYQPVVEAFGTDILHKD 1332
+++GLTG SGKSSV Q L+ LG VID D + PG PA++ +VEAFGT++L ++
Sbjct: 2 FLVGLTGGIASGKSSVLQVLQQLGCAVIDVDVIARHVVQPGYPAHRRIVEAFGTEVLLEN 61
Query: 1333 GTINRKVLSSRVF 1371
G I+RK L +F
Sbjct: 62 GDIDRKALGDLIF 74
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,841,441
Number of extensions: 1341994
Number of successful extensions: 6456
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6284
Number of HSP's successfully gapped: 4
Length of query: 504
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 401
Effective length of database: 8,779,541
Effective search space: 3520595941
Effective search space used: 3520595941
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003746
(1512 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1366 0.0
gb|GL895283.2| Sus scrofa unplaced genomic scaffold ChrUScaf3167 662 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1366 bits (689), Expect = 0.0
Identities = 704/709 (99%)
Strand = Plus / Minus
Query: 71 gccgggccatcatggctgtattccgatcgggcctcctggtgctgacaacgccgctggcct 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474962 gccgggccatcatggctgtattccgatcgggcctcctggtgctgacaacgccgctggcct 20474903
Query: 131 ccctggtccctcgcctggcccccatcctgacctcggcggcccggcttgtgaatcacacgc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474902 ccctggtccctcgcctggcccccatcctgacctcggcggcccggcttgtgaatcacacgc 20474843
Query: 191 tctatgtacacctgcagcccggcatgaacctggggggcccggctcagccccagtctagcc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474842 tctatgtacacctgcagcccggcatgaacctggggggcccggctcagccccagtctagcc 20474783
Query: 251 ccgtgcaggccacatttgaagttatcgatttcatcacgcacctctatgctggcgccgatc 310
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 20474782 ccgtgcaggccacgtttgaagttatcgatttcatcacgcacctctatgctggtgccgatc 20474723
Query: 311 tccacaggcacctggacgtcagaattttgctgaccaatatccgaaccaagagctttctcc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474722 tccacaggcacctggacgtcagaattttgctgaccaatatccgaaccaagagctttctcc 20474663
Query: 371 ctcccctgcctagctcggtccagaacctggcccacccaccggaagtagtgctgactgact 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474662 ctcccctgcctagctcggtccagaacctggcccacccaccggaagtagtgctgactgact 20474603
Query: 431 tccagaccctggatggaagccagtacaacccggtcaagcaacagctagagcgttatgcca 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474602 tccagaccctggatggaagccagtacaacccggtcaagcaacagctagagcgttatgcca 20474543
Query: 491 ccagctgttacagctgttgtccgcagctgtcttcggtgctgctataccccgattatgggc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474542 ccagctgttacagctgttgtccgcagctgtcttcggtgctgctataccccgattatgggc 20474483
Query: 551 ccggaatgctgcctgtgcagcccctagatgtccctttaccctccaccatcaggccggcct 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474482 ccggaatgctgcctgtgcagcccctagatgtccctttaccctccaccatcaggccggcct 20474423
Query: 611 cccccgtggccaggtctgcaaagcaaccagtgcgtggccaccagcgaggggctgtaggtg 670
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 20474422 ccccagtggccaggtctgcaaagcaaccagtgcgtggccaccagcgaggggctgtgggtg 20474363
Query: 671 gcacctttgaccgcctacacaatgcccacaaagtgttgctcagtgtggcctgcatcctag 730
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20474362 gcacctttgaccgcctacacaatgcccacaaagtgttgctcagtgtggcgtgcatcctag 20474303
Query: 731 cccaggagcagcttgtggtgggagtggcagacaaagacctgttgaagag 779
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474302 cccaggagcagcttgtggtgggagtggcagacaaagacctgttgaagag 20474254
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 779 gcaagttgctccctgagctgctccaaccctacacagaacgcgtggaacatctgagtgagt 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20473358 gcaagttgctccctgagctgctccaaccctacacagaacgcgtggaacatctgagtgagt 20473299
Query: 839 tcctggtggacatcaagccctccttgagttttgatctcatccccctgctggacccctatg 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20473298 tcctggtggacatcaagccctccttgagttttgatctcatccccctgctggacccctatg 20473239
Query: 899 ggcccgctggctctgacccctctctggagttcctggtggtcagcgaggagacctatcgtg 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20473238 ggcccgctggctctgacccctctctggagttcctggtggtcagcgaggagacctatcgtg 20473179
Query: 959 gggggatggccgtcaaccgcttccgccttgagaatg 994
||||||||||||||||||||||||||||||||||||
Sbjct: 20473178 gggggatggccgtcaaccgcttccgccttgagaatg 20473143
Score = 369 bits (186), Expect = 3e-99
Identities = 189/190 (99%)
Strand = Plus / Minus
Query: 1126 aagaggccagagctccccccaggttgctacgtgatcgggctgacaggcgtcagtggctct 1185
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 20472655 aagaggccagagctccccccaggttgctacgtgatcgggctgacaggcatcagtggctct 20472596
Query: 1186 gggaagagctcagtagctcagcggctgaagggcctgggggcgtatgtcatcgacagtgac 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20472595 gggaagagctcagtagctcagcggctgaagggcctgggggcgtatgtcatcgacagtgac 20472536
Query: 1246 cagctgggccaccggtcctatgccccgggcggtcctgcctaccagccagttgtggaagcc 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20472535 cagctgggccaccggtcctatgccccgggcggtcctgcctaccagccagttgtggaagcc 20472476
Query: 1306 tttggaacag 1315
||||||||||
Sbjct: 20472475 tttggaacag 20472466
Score = 254 bits (128), Expect = 1e-64
Identities = 131/132 (99%)
Strand = Plus / Minus
Query: 994 ggcctagaggagctcaccttgtaccagatccagctgctgaaggacctaaaccccaaggaa 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20472891 ggcctagaggagctcaccttgtaccagatccagctgctgaaggacctaaaccccaaggaa 20472832
Query: 1054 aatgaagaggacaaagtcagctcctccagcttccgccaacaaatgctgggaaacctgctc 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20472831 aatgaagaggacaaagtcagctcctccagcttccgccaacaaatgctgggaaacctgctc 20472772
Query: 1114 cggccttcacat 1125
|||||| |||||
Sbjct: 20472771 cggcctccacat 20472760
Score = 131 bits (66), Expect = 1e-27
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 2 agtgttaacgggtcgcggcgggggaagactccgcggtggtgcacgcggaaccaaagtccg 61
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 20475436 agtgttaacgggtcgcggtgggggaagactccgcggtggtgcacgcggaaccaaagtccg 20475377
Query: 62 gaggtctcag 71
||||||||||
Sbjct: 20475376 gaggtctcag 20475367
Score = 125 bits (63), Expect = 8e-26
Identities = 80/86 (93%)
Strand = Plus / Minus
Query: 1377 cagaagcagctgaagatactcacggacattgtgtggccagttatcgcaaagctggcccca 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 20472132 cagaagcagctgaagatactcacggacattgtgtggccagttatcgcaaagctggccaga 20472073
Query: 1437 gagagagtggatcangccgtggctga 1462
||| |||||||| |||||||||||
Sbjct: 20472072 gaggaggtggatcaggccgtggctga 20472047
Score = 115 bits (58), Expect = 7e-23
Identities = 64/66 (96%)
Strand = Plus / Minus
Query: 1313 cagatattctccataaagacggcaccatcaacaggaaggtccttagcagccgggtgtttg 1372
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 20472385 cagatattctccataaagacggcaccatcaacaggaaggtcctaggcagccgggtgtttg 20472326
Query: 1373 ggaaca 1378
||||||
Sbjct: 20472325 ggaaca 20472320
Score = 91.7 bits (46), Expect = 1e-15
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 1463 aggaaagcgtgtgtgcgtgatcaatgctgccgtgctgcttgaagccggct 1512
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 20471881 aggaaagcgtgtgtgcgtgatcgatgctgccgtgctgcttgaagccggct 20471832
>gb|GL895283.2| Sus scrofa unplaced genomic scaffold ChrUScaf3167
Length = 3620
Score = 662 bits (334), Expect = 0.0
Identities = 334/334 (100%)
Strand = Plus / Minus
Query: 266 ttgaagttatcgatttcatcacgcacctctatgctggcgccgatctccacaggcacctgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ttgaagttatcgatttcatcacgcacctctatgctggcgccgatctccacaggcacctgg 774
Query: 326 acgtcagaattttgctgaccaatatccgaaccaagagctttctccctcccctgcctagct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 acgtcagaattttgctgaccaatatccgaaccaagagctttctccctcccctgcctagct 714
Query: 386 cggtccagaacctggcccacccaccggaagtagtgctgactgacttccagaccctggatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cggtccagaacctggcccacccaccggaagtagtgctgactgacttccagaccctggatg 654
Query: 446 gaagccagtacaacccggtcaagcaacagctagagcgttatgccaccagctgttacagct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaagccagtacaacccggtcaagcaacagctagagcgttatgccaccagctgttacagct 594
Query: 506 gttgtccgcagctgtcttcggtgctgctataccccgattatgggcccggaatgctgcctg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gttgtccgcagctgtcttcggtgctgctataccccgattatgggcccggaatgctgcctg 534
Query: 566 tgcagcccctagatgtccctttaccctccaccat 599
||||||||||||||||||||||||||||||||||
Sbjct: 533 tgcagcccctagatgtccctttaccctccaccat 500
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 71 gccgggccatcatggctgtattccgatcgggcctcctggtgctgacaacgccgctggcct 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 gccgggccatcatggctgtattccgatcgggcctcctggtgctgacaacgccgctggcct 1125
Query: 131 ccctggtccctcgcctggcccccatcctgacctcgg 166
||||||||||||||||||||||||||||||||||||
Sbjct: 1124 ccctggtccctcgcctggcccccatcctgacctcgg 1089
Score = 125 bits (63), Expect = 8e-26
Identities = 66/67 (98%)
Strand = Plus / Minus
Query: 713 gtgtggcctgcatcctagcccaggagcagcttgtggtgggagtggcagacaaagacctgt 772
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtgtggcgtgcatcctagcccaggagcagcttgtggtgggagtggcagacaaagacctgt 340
Query: 773 tgaagag 779
|||||||
Sbjct: 339 tgaagag 333
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 195 tgtacacctgcagcccggcatgaacctggggggcccggctcagccccagtctagc 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 tgtacacctgcagcccggcatgaacctggggggcccggctcagccccagtctagc 934
Score = 89.7 bits (45), Expect = 4e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 27 agactccgcggtggtgcacgcggaaccaaagtccggaggtctcag 71
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1643 agactccgcggtggtgcacgcggaaccaaagtccggaggtctcag 1599
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,594,545
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 13
Length of query: 1512
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1491
Effective length of database: 2,808,413,156
Effective search space: 4187344015596
Effective search space used: 4187344015596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)