Animal-Genome cDNA 20110601C-003749


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003749
         (940 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014919.1| transmembrane protein 186 [Bos taurus].           363   e-100

>ref|NP_001014919.1| transmembrane protein 186 [Bos taurus].
          Length = 212

 Score =  363 bits (932), Expect = e-100
 Identities = 176/212 (83%), Positives = 188/212 (88%)
 Frame = +3

Query: 75  MAALLRAVLWSPRQAAWGRPFHRLWRCSGQDPRRWAGSRPLPSKKNPLGTETEKFQMVYR 254
           MAA+LRAV  SP  AAWGRP HRL  C GQDPRRW GS P  SK+ PLG ETEKFQMVYR
Sbjct: 1   MAAVLRAVARSPGPAAWGRPLHRLCCCGGQDPRRWVGSGPPHSKEKPLGPETEKFQMVYR 60

Query: 255 FDAIRVFGYLSQLKVAQTALTVVALPPGIYWYSQGLMTFNSLCLAGAVASFALAMLCWMS 434
           FDAI+ FGYLS+LKVAQTALTV ALPPG+Y YSQGLM F+SLCLAG VA FALAMLCWMS
Sbjct: 61  FDAIKAFGYLSRLKVAQTALTVAALPPGLYCYSQGLMPFSSLCLAGGVAGFALAMLCWMS 120

Query: 435 HFFRRLVGILYVNESGTVLRVAHLTFWGRRQDTYCPVADVVPMTESHDRPQELFVRIRQY 614
           HFFRRLVGILYVNE GTVLRVAHLTFWGRRQDTYCPVADV+PMTES DRPQELF+RI+QY
Sbjct: 121 HFFRRLVGILYVNEEGTVLRVAHLTFWGRRQDTYCPVADVIPMTESPDRPQELFMRIQQY 180

Query: 615 SGKQTFYLTLRYGRILDRERFMQVFGALDSLK 710
           SGKQTFYLTLRYGR+LD+ERF QVFG LD+LK
Sbjct: 181 SGKQTFYLTLRYGRVLDQERFTQVFGVLDALK 212


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,291,960
Number of extensions: 1317561
Number of successful extensions: 5559
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5544
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003749
         (940 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,935,177
Number of extensions: 1349903
Number of successful extensions: 5292
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5253
Number of HSP's successfully gapped: 0
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003749
         (940 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_056236.2| transmembrane protein 186 [Homo sapiens].            306   1e-83

>ref|NP_056236.2| transmembrane protein 186 [Homo sapiens].
          Length = 213

 Score =  306 bits (785), Expect = 1e-83
 Identities = 150/213 (70%), Positives = 172/213 (80%), Gaps = 1/213 (0%)
 Frame = +3

Query: 75  MAALLRAVLWSPRQAAWGRPFHRLWRCSGQ-DPRRWAGSRPLPSKKNPLGTETEKFQMVY 251
           MAALLRAV     +A W RP H LW CSGQ DP+RW GS    SK+     ETEKF M Y
Sbjct: 1   MAALLRAVRRFRGKAVWERPLHGLWCCSGQEDPKRWVGSSSPISKEKLPNAETEKFWMFY 60

Query: 252 RFDAIRVFGYLSQLKVAQTALTVVALPPGIYWYSQGLMTFNSLCLAGAVASFALAMLCWM 431
           RFDAIR FG+LS+LK+AQTALTVVALPPG Y YSQGL+T N++CL   ++ FAL MLCWM
Sbjct: 61  RFDAIRTFGFLSRLKLAQTALTVVALPPGYYLYSQGLLTLNTVCLMSGISGFALTMLCWM 120

Query: 432 SHFFRRLVGILYVNESGTVLRVAHLTFWGRRQDTYCPVADVVPMTESHDRPQELFVRIRQ 611
           S+F RRLVGILY+NESGT+LRVAHL FWG RQDTYCP+ADV+P+TE+ DRPQE+FVRI++
Sbjct: 121 SYFLRRLVGILYLNESGTMLRVAHLNFWGWRQDTYCPMADVIPLTETKDRPQEMFVRIQR 180

Query: 612 YSGKQTFYLTLRYGRILDRERFMQVFGALDSLK 710
           YSGKQTFY+TLRYGRILDRERF QVFG    LK
Sbjct: 181 YSGKQTFYVTLRYGRILDRERFTQVFGVHQMLK 213


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,080,251
Number of extensions: 1320532
Number of successful extensions: 5460
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5439
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003749
         (940 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079984.2| transmembrane protein 186 [Mus musculus].            305   4e-83

>ref|NP_079984.2| transmembrane protein 186 [Mus musculus].
          Length = 216

 Score =  305 bits (780), Expect = 4e-83
 Identities = 152/213 (71%), Positives = 172/213 (80%), Gaps = 1/213 (0%)
 Frame = +3

Query: 75  MAALLRAVLWSPRQAAWGRPFHRLWRCSGQ-DPRRWAGSRPLPSKKNPLGTETEKFQMVY 251
           MA LLR V       AW RP   LW CSGQ D +RW GSR   S++   GTETE F  +Y
Sbjct: 1   MAFLLRVVPRLQGPTAWRRPLQGLWCCSGQGDSKRWVGSRSPHSREKSPGTETETFHTIY 60

Query: 252 RFDAIRVFGYLSQLKVAQTALTVVALPPGIYWYSQGLMTFNSLCLAGAVASFALAMLCWM 431
           RF AIR  G+LS+LK+AQTA+TVVALPPG Y YSQGLMT +SLCL G VASFALAMLCWM
Sbjct: 61  RFRAIRAIGFLSRLKLAQTAVTVVALPPGFYCYSQGLMTLSSLCLLGGVASFALAMLCWM 120

Query: 432 SHFFRRLVGILYVNESGTVLRVAHLTFWGRRQDTYCPVADVVPMTESHDRPQELFVRIRQ 611
           SHFFRRLVGILYVNESGT+LRVAHLTFWG RQDTYC V+D++P++ES +R Q++FVRI+Q
Sbjct: 121 SHFFRRLVGILYVNESGTLLRVAHLTFWGWRQDTYCAVSDMIPLSESQERVQDVFVRIQQ 180

Query: 612 YSGKQTFYLTLRYGRILDRERFMQVFGALDSLK 710
           YSGKQTFYLTLRYGRILDRERF QVFG L +LK
Sbjct: 181 YSGKQTFYLTLRYGRILDRERFAQVFGTLATLK 213


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,447,801
Number of extensions: 1089366
Number of successful extensions: 4145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4114
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003749
         (940 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003124653.1| PREDICTED: transmembrane protein 186-like is...   439   e-124
Alignment   gi|XP_003124654.1| PREDICTED: transmembrane protein 186-like is...   318   2e-87

>ref|XP_003124653.1| PREDICTED: transmembrane protein 186-like isoform 1 [Sus scrofa].
          Length = 212

 Score =  439 bits (1130), Expect = e-124
 Identities = 212/212 (100%), Positives = 212/212 (100%)
 Frame = +3

Query: 75  MAALLRAVLWSPRQAAWGRPFHRLWRCSGQDPRRWAGSRPLPSKKNPLGTETEKFQMVYR 254
           MAALLRAVLWSPRQAAWGRPFHRLWRCSGQDPRRWAGSRPLPSKKNPLGTETEKFQMVYR
Sbjct: 1   MAALLRAVLWSPRQAAWGRPFHRLWRCSGQDPRRWAGSRPLPSKKNPLGTETEKFQMVYR 60

Query: 255 FDAIRVFGYLSQLKVAQTALTVVALPPGIYWYSQGLMTFNSLCLAGAVASFALAMLCWMS 434
           FDAIRVFGYLSQLKVAQTALTVVALPPGIYWYSQGLMTFNSLCLAGAVASFALAMLCWMS
Sbjct: 61  FDAIRVFGYLSQLKVAQTALTVVALPPGIYWYSQGLMTFNSLCLAGAVASFALAMLCWMS 120

Query: 435 HFFRRLVGILYVNESGTVLRVAHLTFWGRRQDTYCPVADVVPMTESHDRPQELFVRIRQY 614
           HFFRRLVGILYVNESGTVLRVAHLTFWGRRQDTYCPVADVVPMTESHDRPQELFVRIRQY
Sbjct: 121 HFFRRLVGILYVNESGTVLRVAHLTFWGRRQDTYCPVADVVPMTESHDRPQELFVRIRQY 180

Query: 615 SGKQTFYLTLRYGRILDRERFMQVFGALDSLK 710
           SGKQTFYLTLRYGRILDRERFMQVFGALDSLK
Sbjct: 181 SGKQTFYLTLRYGRILDRERFMQVFGALDSLK 212


>ref|XP_003124654.1| PREDICTED: transmembrane protein 186-like isoform 2 [Sus scrofa].
          Length = 156

 Score =  318 bits (816), Expect = 2e-87
 Identities = 156/156 (100%), Positives = 156/156 (100%)
 Frame = +3

Query: 243 MVYRFDAIRVFGYLSQLKVAQTALTVVALPPGIYWYSQGLMTFNSLCLAGAVASFALAML 422
           MVYRFDAIRVFGYLSQLKVAQTALTVVALPPGIYWYSQGLMTFNSLCLAGAVASFALAML
Sbjct: 1   MVYRFDAIRVFGYLSQLKVAQTALTVVALPPGIYWYSQGLMTFNSLCLAGAVASFALAML 60

Query: 423 CWMSHFFRRLVGILYVNESGTVLRVAHLTFWGRRQDTYCPVADVVPMTESHDRPQELFVR 602
           CWMSHFFRRLVGILYVNESGTVLRVAHLTFWGRRQDTYCPVADVVPMTESHDRPQELFVR
Sbjct: 61  CWMSHFFRRLVGILYVNESGTVLRVAHLTFWGRRQDTYCPVADVVPMTESHDRPQELFVR 120

Query: 603 IRQYSGKQTFYLTLRYGRILDRERFMQVFGALDSLK 710
           IRQYSGKQTFYLTLRYGRILDRERFMQVFGALDSLK
Sbjct: 121 IRQYSGKQTFYLTLRYGRILDRERFMQVFGALDSLK 156


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,709,708
Number of extensions: 851814
Number of successful extensions: 3353
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3342
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003749
         (940 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr03                                                        1699   0.0  

>Sscrofa_Chr03 
||          Length = 144787322

 Score = 1699 bits (857), Expect = 0.0
 Identities = 862/864 (99%)
 Strand = Plus / Plus

                                                                            
Query: 77       ggctgccctgctccgagctgtgctgtggtcaccaaggcaggctgcatggggaaggccttt 136
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34622748 ggctgccctgctccgagctgtgctgtggtcaccaaggcaggctgcatggggaaggccttt 34622807

                                                                            
Query: 137      ccacaggctgtggcgctgcagtgggcaggatcctaggaggtgggcggggagcaggcctct 196
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34622808 ccacaggctgtggcgctgcagtgggcaggatcctaggaggtgggcggggagcaggcctct 34622867

                                                                            
Query: 197      gccatccaagaagaacccgctgggcacagagactgagaaatttcagatggtgtaccggtt 256
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34622868 gccatccaagaagaacccgctgggcacagagactgagaaatttcagatggtgtaccggtt 34622927

                                                                            
Query: 257      tgatgccatcagggtcttcgggtacctctctcagctgaaggtggcacagacagcgttgac 316
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34622928 tgatgccatcagggtcttcgggtacctctctcagctgaaggtggcacagacagcgttgac 34622987

                                                                            
Query: 317      agtggtggccctgccgcctggcatctactggtactcccagggcctcatgaccttcaactc 376
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34622988 agtggtggccctgccgcctggcatctactggtactcccagggcctcatgaccttcaactc 34623047

                                                                            
Query: 377      cctgtgcctggcaggcgcagttgccagcttcgcgctggccatgttgtgctggatgagcca 436
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34623048 cctgtgcctggcaggcgcagttgccagcttcgcgctggccatgttgtgctggatgagcca 34623107

                                                                            
Query: 437      tttcttccggaggctggtgggcatcctctatgtgaatgaatcaggcacggtgctgcgggt 496
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34623108 tttcttccggaggctggtgggcatcctctatgtgaatgaatcaggcacggtgctgcgggt 34623167

                                                                            
Query: 497      ggcccacctgaccttctggggccggcgacaggacacgtactgccccgtggccgacgtggt 556
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34623168 ggcccacctgaccttctggggccggcgacaggacacgtactgccccgtggccgacgtggt 34623227

                                                                            
Query: 557      ccccatgacagaaagccacgatcggcctcaggagctgtttgtgcggatccggcagtacag 616
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34623228 ccccatgacagaaagccacgatcggcctcaggagctgtttgtgcggatccggcagtacag 34623287

                                                                            
Query: 617      tgggaaacagaccttctatctcaccctacgctacggacgcatcctggaccgggagcgttt 676
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34623288 tgggaaacagaccttctatctcaccctacgctacggacgcatcctggaccgggagcgttt 34623347

                                                                            
Query: 677      catgcaggtgtttggggcgctggactcactcaagtgaaggactgggagccaggccgcctg 736
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34623348 catgcaggtgtttggggcgctggactcactcaagtgaaggactgggagccaggccgcctg 34623407

                                                                            
Query: 737      ggtctcccgtaggaaggctcagggaagggtgaggctgaagtggggaagtcaggcagctgg 796
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34623408 ggtctcccgtaggaaggctcagggaagggtgaggctgaagtggggaagtcaggcagctgg 34623467

                                                                            
Query: 797      aaactgtcaggaccccagggacttgtcttctggaattgagaaattcacaaggtagaagct 856
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34623468 aaactgtcaggaccccagggacttgtcttctggaattgagaaattcacaaggtagaagct 34623527

                                                                            
Query: 857      agcaaccaggtttaggaaagaggccctgagtgcaaattcttaactgcacttatgtatgac 916
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34623528 agcaaccaggtttaggaaagaggccctgagtgcaaattcttaactgcacttatgtatgac 34623587

                                        
Query: 917      attgancacggccagaagtttctg 940
                |||||  |||||||||||||||||
Sbjct: 34623588 attgacaacggccagaagtttctg 34623611



 Score =  139 bits (70), Expect = 3e-30
 Identities = 77/78 (98%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1        ttagggcggaggaacacgttctcggagattcccggaacgcgagggactcgcttccagctg 60
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34621654 ttagggcggagga-cacgttctcggagattcccggaacgcgagggactcgcttccagctg 34621712

                                  
Query: 61       caggctgcggggccatgg 78
                ||||||||||||||||||
Sbjct: 34621713 caggctgcggggccatgg 34621730


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,007,557
Number of extensions: 138
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 940
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 919
Effective length of database: 2,808,413,156
Effective search space: 2580931690364
Effective search space used: 2580931690364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)