Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003750
(952 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029723.1| vesicle transport protein SFT2A [Bos taurus]. 294 7e-80
Alignment gi|XP_002694435.1| PREDICTED: SFT2 domain containing 1-like [Bo... 238 6e-63
Alignment gi|XP_001787440.1| PREDICTED: SFT2 domain containing 1-like [Bo... 238 6e-63
Alignment gi|NP_001179051.1| vesicle transport protein SFT2B [Bos taurus]. 207 8e-54
Alignment gi|XP_002685862.1| PREDICTED: SFT2 domain containing 2 [Bos tau... 207 8e-54
>ref|NP_001029723.1| vesicle transport protein SFT2A [Bos taurus].
Length = 159
Score = 294 bits (753), Expect = 7e-80
Identities = 142/151 (94%), Positives = 147/151 (97%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG 260
MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWF ICFVSGIFFS LGTGLLWLPGG
Sbjct: 1 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFAICFVSGIFFSILGTGLLWLPGG 60
Query: 261 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK 440
IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLAT++M+LC VLTLCAALWW K
Sbjct: 61 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATVIMLLCFVLTLCAALWWHK 120
Query: 441 KGLALLFCILQFLSLTWYSLSYIPYARDAVI 533
KGLA+LFCILQFLS+TWYSLSYIPYARDAVI
Sbjct: 121 KGLAVLFCILQFLSMTWYSLSYIPYARDAVI 151
>ref|XP_002694435.1| PREDICTED: SFT2 domain containing 1-like [Bos taurus].
Length = 193
Score = 238 bits (607), Expect = 6e-63
Identities = 118/151 (78%), Positives = 130/151 (86%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG 260
+EKL VLS QD++EQGLT Q+LDA +LSFNTRLKWF +C VSGIF S LGT LLWLPGG
Sbjct: 36 VEKLLWVLSVQDNKEQGLTTQLLDALSLSFNTRLKWFAMCVVSGIF-SILGTRLLWLPGG 94
Query: 261 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK 440
IKLF VFYTFG AALASTCFLMGP+KQLKKMFETTRLL TI+++LCLVLTLC A WW K
Sbjct: 95 IKLFEVFYTFGYTAALASTCFLMGPMKQLKKMFETTRLLPTIIILLCLVLTLCTAFWWHK 154
Query: 441 KGLALLFCILQFLSLTWYSLSYIPYARDAVI 533
KGLA+LFCILQFL +TWYSL YIPYAR VI
Sbjct: 155 KGLAILFCILQFLLMTWYSLPYIPYARVVVI 185
>ref|XP_001787440.1| PREDICTED: SFT2 domain containing 1-like [Bos taurus].
Length = 193
Score = 238 bits (607), Expect = 6e-63
Identities = 118/151 (78%), Positives = 130/151 (86%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG 260
+EKL VLS QD++EQGLT Q+LDA +LSFNTRLKWF +C VSGIF S LGT LLWLPGG
Sbjct: 36 VEKLLWVLSVQDNKEQGLTTQLLDALSLSFNTRLKWFAMCVVSGIF-SILGTRLLWLPGG 94
Query: 261 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK 440
IKLF VFYTFG AALASTCFLMGP+KQLKKMFETTRLL TI+++LCLVLTLC A WW K
Sbjct: 95 IKLFEVFYTFGYTAALASTCFLMGPMKQLKKMFETTRLLPTIIILLCLVLTLCTAFWWHK 154
Query: 441 KGLALLFCILQFLSLTWYSLSYIPYARDAVI 533
KGLA+LFCILQFL +TWYSL YIPYAR VI
Sbjct: 155 KGLAILFCILQFLLMTWYSLPYIPYARVVVI 185
>ref|NP_001179051.1| vesicle transport protein SFT2B [Bos taurus].
Length = 160
Score = 207 bits (528), Expect = 8e-54
Identities = 98/151 (64%), Positives = 126/151 (83%), Gaps = 1/151 (0%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPG- 257
M+KL++VLSGQD E++G ++V++A++LS TR+K F+ CF +GI S LGT LLW+P
Sbjct: 1 MDKLKKVLSGQDSEDRGGLSEVVEATSLSSGTRIKGFIACFAAGILCSLLGTLLLWVPRK 60
Query: 258 GIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWR 437
G+ LFAVFYTFGNIA+L ST FLMGP+ QLK+MFE TRL+AT++++LC LTLC+A WW
Sbjct: 61 GLYLFAVFYTFGNIASLGSTVFLMGPMTQLKRMFEPTRLIATVLVLLCFALTLCSAFWWH 120
Query: 438 KKGLALLFCILQFLSLTWYSLSYIPYARDAV 530
KGLAL+FCILQ L+LTWYSLSYIP+ARDAV
Sbjct: 121 NKGLALIFCILQSLALTWYSLSYIPFARDAV 151
>ref|XP_002685862.1| PREDICTED: SFT2 domain containing 2 [Bos taurus].
Length = 160
Score = 207 bits (528), Expect = 8e-54
Identities = 98/151 (64%), Positives = 126/151 (83%), Gaps = 1/151 (0%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPG- 257
M+KL++VLSGQD E++G ++V++A++LS TR+K F+ CF +GI S LGT LLW+P
Sbjct: 1 MDKLKKVLSGQDSEDRGGLSEVVEATSLSSGTRIKGFIACFAAGILCSLLGTLLLWVPRK 60
Query: 258 GIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWR 437
G+ LFAVFYTFGNIA+L ST FLMGP+ QLK+MFE TRL+AT++++LC LTLC+A WW
Sbjct: 61 GLYLFAVFYTFGNIASLGSTVFLMGPMTQLKRMFEPTRLIATVLVLLCFALTLCSAFWWH 120
Query: 438 KKGLALLFCILQFLSLTWYSLSYIPYARDAV 530
KGLAL+FCILQ L+LTWYSLSYIP+ARDAV
Sbjct: 121 NKGLALIFCILQSLALTWYSLSYIPFARDAV 151
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,639,799
Number of extensions: 723593
Number of successful extensions: 2406
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2399
Number of HSP's successfully gapped: 5
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003750
(952 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533472.2| PREDICTED: similar to CG5104-PB [Canis familiar... 288 5e-78
Alignment gi|XP_547478.2| PREDICTED: similar to SFT2 domain containing 2 ... 189 4e-48
>ref|XP_533472.2| PREDICTED: similar to CG5104-PB [Canis familiaris].
Length = 159
Score = 288 bits (737), Expect = 5e-78
Identities = 138/151 (91%), Positives = 146/151 (96%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG 260
MEKLRRVLSGQDDEEQGLTAQVLDAS+LSFNTRLKWFVICFV GIFFS LGTGLLWLPGG
Sbjct: 1 MEKLRRVLSGQDDEEQGLTAQVLDASSLSFNTRLKWFVICFVCGIFFSILGTGLLWLPGG 60
Query: 261 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK 440
IKLFAVFYT GN++ALASTCFLMGP+KQLKKMFETTRLLATI+M+LCL+ TLCAALWW K
Sbjct: 61 IKLFAVFYTLGNLSALASTCFLMGPMKQLKKMFETTRLLATIIMLLCLIFTLCAALWWHK 120
Query: 441 KGLALLFCILQFLSLTWYSLSYIPYARDAVI 533
KGLALLFCILQFLS+TWYSLSYIPYARDAVI
Sbjct: 121 KGLALLFCILQFLSMTWYSLSYIPYARDAVI 151
>ref|XP_547478.2| PREDICTED: similar to SFT2 domain containing 2 [Canis familiaris].
Length = 147
Score = 189 bits (479), Expect = 4e-48
Identities = 91/137 (66%), Positives = 114/137 (83%), Gaps = 1/137 (0%)
Frame = +3
Query: 123 EQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPG-GIKLFAVFYTFGNI 299
E G +V++AS+LS++TR+K F+ CF +GI S LGT LLW+P G+ LFAVFYTFGNI
Sbjct: 2 ETGGPDKVVEASSLSWSTRIKGFIACFAAGIVCSLLGTLLLWVPRKGLYLFAVFYTFGNI 61
Query: 300 AALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRKKGLALLFCILQFL 479
A++ ST FLMGP+KQLK+MFE TRL+ATI+++LC LTLC+A WW KGLAL+FCILQ L
Sbjct: 62 ASIGSTVFLMGPMKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHIKGLALIFCILQSL 121
Query: 480 SLTWYSLSYIPYARDAV 530
+LTWYSLS+IPYARDAV
Sbjct: 122 ALTWYSLSFIPYARDAV 138
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,929,573
Number of extensions: 735302
Number of successful extensions: 2212
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2209
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003750
(952 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_660152.1| vesicle transport protein SFT2A [Homo sapiens]. 284 7e-77
Alignment gi|NP_955376.1| vesicle transport protein SFT2B [Homo sapiens]. 209 4e-54
>ref|NP_660152.1| vesicle transport protein SFT2A [Homo sapiens].
Length = 159
Score = 284 bits (727), Expect = 7e-77
Identities = 136/151 (90%), Positives = 143/151 (94%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG 260
MEKLRRVLSGQDDEEQGLTAQVLDAS+LSFNTRLKWF ICFV G+FFS LGTGLLWLPGG
Sbjct: 1 MEKLRRVLSGQDDEEQGLTAQVLDASSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGG 60
Query: 261 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK 440
IKLFAVFYT GN+AALASTCFLMGPVKQLKKMFE TRLLATIVM+LC + TLCAALWW K
Sbjct: 61 IKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWHK 120
Query: 441 KGLALLFCILQFLSLTWYSLSYIPYARDAVI 533
KGLA+LFCILQFLS+TWYSLSYIPYARDAVI
Sbjct: 121 KGLAVLFCILQFLSMTWYSLSYIPYARDAVI 151
>ref|NP_955376.1| vesicle transport protein SFT2B [Homo sapiens].
Length = 160
Score = 209 bits (531), Expect = 4e-54
Identities = 99/151 (65%), Positives = 127/151 (84%), Gaps = 1/151 (0%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPG- 257
M+KL++VLSGQD E++ ++V++AS+LS++TR+K F+ CF GI S LGT LLW+P
Sbjct: 1 MDKLKKVLSGQDTEDRSGLSEVVEASSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRK 60
Query: 258 GIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWR 437
G+ LFAVFYTFGNIA++ ST FLMGPVKQLK+MFE TRL+ATI+++LC LTLC+A WW
Sbjct: 61 GLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWH 120
Query: 438 KKGLALLFCILQFLSLTWYSLSYIPYARDAV 530
KGLAL+FCILQ L+LTWYSLS+IP+ARDAV
Sbjct: 121 NKGLALIFCILQSLALTWYSLSFIPFARDAV 151
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,439,870
Number of extensions: 733654
Number of successful extensions: 2156
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2154
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003750
(952 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003085436.1| PREDICTED: vesicle transport protein SFT2A-l... 291 4e-79
Alignment gi|NP_598875.2| vesicle transport protein SFT2A [Mus musculus]. 291 4e-79
Alignment gi|NP_663487.1| vesicle transport protein SFT2B [Mus musculus]. 195 4e-50
>ref|XP_003085436.1| PREDICTED: vesicle transport protein SFT2A-like [Mus musculus].
Length = 159
Score = 291 bits (746), Expect = 4e-79
Identities = 140/151 (92%), Positives = 148/151 (98%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG 260
MEKLRRVLSGQDDEEQGLTAQVLDAS+LSFNTRLKWFVICFV+GIFFSFLGTGLLWLP G
Sbjct: 1 MEKLRRVLSGQDDEEQGLTAQVLDASSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNG 60
Query: 261 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK 440
+KLFAVFYT GN+AALASTCFLMGPVKQLKKMFETTRLLATI+M+LCLV TLCAALWWRK
Sbjct: 61 MKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRK 120
Query: 441 KGLALLFCILQFLSLTWYSLSYIPYARDAVI 533
KGLALLFCILQFLS+TWYSLSYIPYARDAV+
Sbjct: 121 KGLALLFCILQFLSMTWYSLSYIPYARDAVL 151
>ref|NP_598875.2| vesicle transport protein SFT2A [Mus musculus].
Length = 159
Score = 291 bits (746), Expect = 4e-79
Identities = 140/151 (92%), Positives = 148/151 (98%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG 260
MEKLRRVLSGQDDEEQGLTAQVLDAS+LSFNTRLKWFVICFV+GIFFSFLGTGLLWLP G
Sbjct: 1 MEKLRRVLSGQDDEEQGLTAQVLDASSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNG 60
Query: 261 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK 440
+KLFAVFYT GN+AALASTCFLMGPVKQLKKMFETTRLLATI+M+LCLV TLCAALWWRK
Sbjct: 61 MKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRK 120
Query: 441 KGLALLFCILQFLSLTWYSLSYIPYARDAVI 533
KGLALLFCILQFLS+TWYSLSYIPYARDAV+
Sbjct: 121 KGLALLFCILQFLSMTWYSLSYIPYARDAVL 151
>ref|NP_663487.1| vesicle transport protein SFT2B [Mus musculus].
Length = 159
Score = 195 bits (496), Expect = 4e-50
Identities = 97/151 (64%), Positives = 123/151 (81%), Gaps = 1/151 (0%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPG- 257
M+KL++VLSGQD E++ ++V++AS+LS+ TR+K F+ CF GI S LGT LLW+P
Sbjct: 1 MDKLKKVLSGQDTEDRSGLSEVVEASSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRK 60
Query: 258 GIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWR 437
G+ LFAVFYT GNI ++ ST FLMGP+KQLK+MFE TRL+ATI+++LC LTLC+A W
Sbjct: 61 GLGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTLCSAFLW- 119
Query: 438 KKGLALLFCILQFLSLTWYSLSYIPYARDAV 530
KGLAL+FCILQ L+LTWYSLSYIPYARDAV
Sbjct: 120 NKGLALIFCILQSLALTWYSLSYIPYARDAV 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,931,867
Number of extensions: 631926
Number of successful extensions: 1945
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1942
Number of HSP's successfully gapped: 3
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003750
(952 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121136.1| PREDICTED: vesicle transport protein SFT2A-l... 305 2e-83
Alignment gi|NP_001230577.1| vesicle transport protein SFT2B [Sus scrofa]. 195 3e-50
>ref|XP_003121136.1| PREDICTED: vesicle transport protein SFT2A-like [Sus scrofa].
Length = 159
Score = 305 bits (781), Expect = 2e-83
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG 260
MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG
Sbjct: 1 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGG 60
Query: 261 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK 440
IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK
Sbjct: 61 IKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRK 120
Query: 441 KGLALLFCILQFLSLTWYSLSYIPYARDAVI 533
KGLALLFCILQFLSLTWYSLSYIPYARDAVI
Sbjct: 121 KGLALLFCILQFLSLTWYSLSYIPYARDAVI 151
>ref|NP_001230577.1| vesicle transport protein SFT2B [Sus scrofa].
Length = 159
Score = 195 bits (496), Expect = 3e-50
Identities = 98/151 (64%), Positives = 125/151 (82%), Gaps = 1/151 (0%)
Frame = +3
Query: 81 MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPG- 257
M+KL++VLSGQD E++G ++V +A++LS TR+K F+ CF +GI S LGT LLW+P
Sbjct: 1 MDKLKKVLSGQDAEDRGGLSEVAEATSLSSGTRIKGFIACFAAGILCSLLGTFLLWVPQK 60
Query: 258 GIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWR 437
G+ LFAVFYTFGNIA++ ST FLMGP+KQLK+MFE TRL+ATI+++LC LTLC A + R
Sbjct: 61 GLYLFAVFYTFGNIASIGSTVFLMGPMKQLKRMFEPTRLIATILVLLCFALTLCFA-FLR 119
Query: 438 KKGLALLFCILQFLSLTWYSLSYIPYARDAV 530
KGLAL+FCILQ L+LTWYSLSYIP+ARDAV
Sbjct: 120 HKGLALIFCILQSLALTWYSLSYIPFARDAV 150
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,650,573
Number of extensions: 460941
Number of successful extensions: 1485
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1483
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003750
(952 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 785 0.0
Sscrofa_Chr18 268 5e-69
Sscrofa_Chr04 98 1e-17
>Sscrofa_Chr01
|| Length = 315321322
Score = 785 bits (396), Expect = 0.0
Identities = 396/396 (100%)
Strand = Plus / Plus
Query: 520 gggatgcagtaattaaatgctgttcttctctcctgagttgaacatcagaaactgaaaagg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732626 gggatgcagtaattaaatgctgttcttctctcctgagttgaacatcagaaactgaaaagg 3732685
Query: 580 ccactggaaagttgatattctgatttgagcaaagtatgcatttcctgatgcaataatcac 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732686 ccactggaaagttgatattctgatttgagcaaagtatgcatttcctgatgcaataatcac 3732745
Query: 640 tccgaaaaccactgcactgacctgaccatttgagaccattttgtatattgataaaaacta 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732746 tccgaaaaccactgcactgacctgaccatttgagaccattttgtatattgataaaaacta 3732805
Query: 700 catgccgattaaaactgttaaatgcttgtgaaacgttaaattcattatgtgtcattaatg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732806 catgccgattaaaactgttaaatgcttgtgaaacgttaaattcattatgtgtcattaatg 3732865
Query: 760 tgctcttccgaaggtagattttaatcattgcctattgtaaatgatttttagccagttttt 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732866 tgctcttccgaaggtagattttaatcattgcctattgtaaatgatttttagccagttttt 3732925
Query: 820 aatcttttctaaacacatttgagatgtgaatatttgcagataaacctatgctgcaagata 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732926 aatcttttctaaacacatttgagatgtgaatatttgcagataaacctatgctgcaagata 3732985
Query: 880 tactcagctttttggatggtttttaaatctacattt 915
||||||||||||||||||||||||||||||||||||
Sbjct: 3732986 tactcagctttttggatggtttttaaatctacattt 3733021
Score = 280 bits (141), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 5 tttcaggttccgggtttccgggtgaacgagagcggctggcgagtgagtggccgccgctgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3716455 tttcaggttccgggtttccgggtgaacgagagcggctggcgagtgagtggccgccgctgc 3716514
Query: 65 ggcggggagcagggccatggagaagctgcggcgggtcctgagcggccaggacgacgagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3716515 ggcggggagcagggccatggagaagctgcggcgggtcctgagcggccaggacgacgagga 3716574
Query: 125 gcagggcctgactgcgcaggt 145
|||||||||||||||||||||
Sbjct: 3716575 gcagggcctgactgcgcaggt 3716595
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 142 aggtcctggatgcctcgacccttagtttcaacaccaggctgaagtggttcgtcatatgct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3725337 aggtcctggatgcctcgacccttagtttcaacaccaggctgaagtggttcgtcatatgct 3725396
Query: 202 tcgtaagcggcatcttcttctcttttcttg 231
||||||||||||||||||||||||||||||
Sbjct: 3725397 tcgtaagcggcatcttcttctcttttcttg 3725426
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 311 cagtacttgctttttaatgggccccgtgaagcagctcaagaagatgttcgaaacgacgcg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3727428 cagtacttgctttttaatgggccccgtgaagcagctcaagaagatgttcgaaacgacgcg 3727487
Query: 371 gttgctggcgacgattgtaatgatc 395
|||||||||||||||||||||||||
Sbjct: 3727488 gttgctggcgacgattgtaatgatc 3727512
Score = 165 bits (83), Expect = 5e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 231 ggaactggattgctgtggcttcctggtggcataaagctttttgcagtattttataccttt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3726270 ggaactggattgctgtggcttcctggtggcataaagctttttgcagtattttataccttt 3726329
Query: 291 ggaaatattgctgccttagccag 313
|||||||||||||||||||||||
Sbjct: 3726330 ggaaatattgctgccttagccag 3726352
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 431 gtggcgcaagaagggactggccttattattctgcatattgcagttcttgtcgctgacctg 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3730071 gtggcgcaagaagggactggccttattattctgcatattgcagttcttgtcgctgacctg 3730130
Query: 491 gta 493
|||
Sbjct: 3730131 gta 3730133
Score = 71.9 bits (36), Expect = 6e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 396 ttgtgtttggtacttaccctgtgtgctgctctttgg 431
||||||||||||||||||||||||||||||||||||
Sbjct: 3728432 ttgtgtttggtacttaccctgtgtgctgctctttgg 3728467
Score = 63.9 bits (32), Expect = 1e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 490 ggtacagtctctcctacatcccgtacgcacgg 521
||||||||||||||||||||||||||||||||
Sbjct: 3731336 ggtacagtctctcctacatcccgtacgcacgg 3731367
>Sscrofa_Chr18
|| Length = 61220071
Score = 268 bits (135), Expect = 5e-69
Identities = 144/147 (97%)
Strand = Plus / Plus
Query: 375 ctggcgacgattgtaatgatcttgtgtttggtacttaccctgtgtgctgctctttggtgg 434
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45377453 ctggcgacgattgttatgatcttgtgtttggtacttaccctgtgtgctgctctttggtgg 45377512
Query: 435 cgcaagaagggactggccttattattctgcatattgcagttcttgtcgctgacctggtac 494
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45377513 cgtaagaagggactggccttattattctgcatattgcagttcttgtcgctgacctggtac 45377572
Query: 495 agtctctcctacatcccgtacgcacgg 521
||||||||||||||||| |||||||||
Sbjct: 45377573 agtctctcctacatcccatacgcacgg 45377599
>Sscrofa_Chr04
|| Length = 143465943
Score = 97.6 bits (49), Expect = 1e-17
Identities = 153/185 (82%), Gaps = 7/185 (3%)
Strand = Plus / Plus
Query: 711 aaactgttaaatgcttgtgaaacgttaaattcattatgtgtcattaatgtgctcttccga 770
||||||||||| |||||| ||| ||||||||||||||||||||||| ||| | ||| |
Sbjct: 25279967 aaactgttaaacgcttgt--aactttaaattcattatgtgtcattaacatgcccatccaa 25280024
Query: 771 aggta----gattttaatcattgcctattgtaaatgatttttagcca-gtttttaatctt 825
|| || |||||||||||||||| ||||||||| ||||||||||| |||||| ||||
Sbjct: 25280025 agataaggggattttaatcattgccaattgtaaattatttttagccatttttttattctt 25280084
Query: 826 ttctaaacacatttgagatgtgaatatttgcagataaacctatgctgcaagatatactca 885
|| ||||| | || | |||||||||||| ||||||||| || ||||||| ||| |||
Sbjct: 25280085 tttaaaacagaattaaaatgtgaatatttaaggataaacctgtgttgcaagacatattca 25280144
Query: 886 gcttt 890
|||||
Sbjct: 25280145 gcttt 25280149
Score = 69.9 bits (35), Expect = 2e-09
Identities = 108/131 (82%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 160 cccttagtttcaacaccaggctgaagtggttcgtcatatgcttcgtaagcggcatcttct 219
|||||||||| |||||| |||| |||||| | ||||||||| ||| || |||| ||||
Sbjct: 25279432 cccttagttttgacaccaaactgaggtggtttggcatatgctttgtatgcagcattttct 25279491
Query: 220 tctcttttcttggaactggattgctgtggcttcctggtggcataaagctttttg-cagta 278
| ||| |||||||||| |||||| |||||||||| | | ||||| |||||| |||||
Sbjct: 25279492 gttttttccttggaactgaattgctatggcttcctgatagaataaaacttttttacagta 25279551
Query: 279 ttttatacctt 289
|||||||||||
Sbjct: 25279552 ttttatacctt 25279562
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,302,062
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 11
Length of query: 952
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 931
Effective length of database: 2,808,413,156
Effective search space: 2614632648236
Effective search space used: 2614632648236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)