Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003772
(1239 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095737.1| hypothetical protein LOC613695 [Bos taurus]. 192 5e-49
Alignment gi|XP_001254354.3| PREDICTED: hypothetical protein [Bos taurus]. 192 5e-49
>ref|NP_001095737.1| hypothetical protein LOC613695 [Bos taurus].
Length = 182
Score = 192 bits (488), Expect = 5e-49
Identities = 103/159 (64%), Positives = 112/159 (70%)
Frame = +1
Query: 409 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN 588
MAMTSVRLPSS+LRKP+AWIGLC ALRGTPSHK CAS NRY+ SS KLNASNYKTL +N
Sbjct: 1 MAMTSVRLPSSILRKPDAWIGLCRALRGTPSHKGCASWNRYLYLSSAKLNASNYKTLLHN 60
Query: 589 IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXXXXXX 768
IFSLR PGLLISPEYIFPFS RLKSNI+SKKS +K LQKV +
Sbjct: 61 IFSLRLPGLLISPEYIFPFSIRLKSNISSKKSTKKTLQKV--EDEGDSDEERDEMSELEE 118
Query: 769 XXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKV 885
D+PS QSFRYDVILKTGLD+GR V
Sbjct: 119 EPEDNPSEVKDYKDLDKAVQSFRYDVILKTGLDIGRKYV 157
>ref|XP_001254354.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 182
Score = 192 bits (488), Expect = 5e-49
Identities = 103/159 (64%), Positives = 112/159 (70%)
Frame = +1
Query: 409 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN 588
MAMTSVRLPSS+LRKP+AWIGLC ALRGTPSHK CAS NRY+ SS KLNASNYKTL +N
Sbjct: 1 MAMTSVRLPSSILRKPDAWIGLCRALRGTPSHKGCASWNRYLYLSSAKLNASNYKTLLHN 60
Query: 589 IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXXXXXX 768
IFSLR PGLLISPEYIFPFS RLKSNI+SKKS +K LQKV +
Sbjct: 61 IFSLRLPGLLISPEYIFPFSIRLKSNISSKKSTKKTLQKV--EDEGDSDEERDEMSELEE 118
Query: 769 XXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKV 885
D+PS QSFRYDVILKTGLD+GR V
Sbjct: 119 EPEDNPSEVKDYKDLDKAVQSFRYDVILKTGLDIGRKYV 157
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,803,853
Number of extensions: 1097994
Number of successful extensions: 4898
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4855
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 308
Effective length of database: 14,207,134
Effective search space: 4375797272
Effective search space used: 4375797272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003772
(1239 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,431,225
Number of extensions: 1123349
Number of successful extensions: 4891
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4849
Number of HSP's successfully gapped: 0
Length of query: 413
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 308
Effective length of database: 15,374,224
Effective search space: 4735260992
Effective search space used: 4735260992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003772
(1239 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001135942.1| hypothetical protein LOC51250 isoform b [Hom... 299 3e-81
Alignment gi|NP_001135940.1| hypothetical protein LOC51250 isoform a [Hom... 298 9e-81
Alignment gi|NP_057571.1| hypothetical protein LOC51250 isoform a [Homo s... 298 9e-81
>ref|NP_001135942.1| hypothetical protein LOC51250 isoform b [Homo sapiens].
Length = 245
Score = 299 bits (766), Expect = 3e-81
Identities = 160/230 (69%), Positives = 174/230 (75%), Gaps = 1/230 (0%)
Frame = +1
Query: 406 AMAMTSVRLPSSVLRKPEAWIGLCGALRGTPS-HKRCASLNRYICFSSTKLNASNYKTLF 582
AMAM SV+L + VLRKP+AWIGL G LRGTPS +K C S NRY+ FSSTKL A NYKTLF
Sbjct: 5 AMAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLF 64
Query: 583 YNIFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXXXX 762
YNIFSLR PGLL+SPE IFPFS RLKSNI S KS +K+LQKV H+
Sbjct: 65 YNIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESH-HDEMSEQ 123
Query: 763 XXXXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKK 942
DDP+ QSFRYDV+LKTGLD+GRNKVEDAFYKGELRLN EKLWKK
Sbjct: 124 EEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKK 183
Query: 943 SRTVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 1092
SRTVKVGDTLDLLI +DK A TETVMRILLKKV EEKT+SEKYRVVLRRW
Sbjct: 184 SRTVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRW 233
>ref|NP_001135940.1| hypothetical protein LOC51250 isoform a [Homo sapiens].
Length = 240
Score = 298 bits (762), Expect = 9e-81
Identities = 159/229 (69%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Frame = +1
Query: 409 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPS-HKRCASLNRYICFSSTKLNASNYKTLFY 585
MAM SV+L + VLRKP+AWIGL G LRGTPS +K C S NRY+ FSSTKL A NYKTLFY
Sbjct: 1 MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
Query: 586 NIFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXXXXX 765
NIFSLR PGLL+SPE IFPFS RLKSNI S KS +K+LQKV H+
Sbjct: 61 NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESH-HDEMSEQE 119
Query: 766 XXXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKS 945
DDP+ QSFRYDV+LKTGLD+GRNKVEDAFYKGELRLN EKLWKKS
Sbjct: 120 EELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKS 179
Query: 946 RTVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 1092
RTVKVGDTLDLLI +DK A TETVMRILLKKV EEKT+SEKYRVVLRRW
Sbjct: 180 RTVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRW 228
>ref|NP_057571.1| hypothetical protein LOC51250 isoform a [Homo sapiens].
Length = 240
Score = 298 bits (762), Expect = 9e-81
Identities = 159/229 (69%), Positives = 173/229 (75%), Gaps = 1/229 (0%)
Frame = +1
Query: 409 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPS-HKRCASLNRYICFSSTKLNASNYKTLFY 585
MAM SV+L + VLRKP+AWIGL G LRGTPS +K C S NRY+ FSSTKL A NYKTLFY
Sbjct: 1 MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
Query: 586 NIFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXXXXX 765
NIFSLR PGLL+SPE IFPFS RLKSNI S KS +K+LQKV H+
Sbjct: 61 NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESH-HDEMSEQE 119
Query: 766 XXXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKS 945
DDP+ QSFRYDV+LKTGLD+GRNKVEDAFYKGELRLN EKLWKKS
Sbjct: 120 EELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKS 179
Query: 946 RTVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 1092
RTVKVGDTLDLLI +DK A TETVMRILLKKV EEKT+SEKYRVVLRRW
Sbjct: 180 RTVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRW 228
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,552,829
Number of extensions: 1095210
Number of successful extensions: 4523
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4496
Number of HSP's successfully gapped: 3
Length of query: 413
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 308
Effective length of database: 14,835,944
Effective search space: 4569470752
Effective search space used: 4569470752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003772
(1239 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080687.1| hypothetical protein LOC67851 [Mus musculus]. 276 3e-74
>ref|NP_080687.1| hypothetical protein LOC67851 [Mus musculus].
Length = 240
Score = 276 bits (705), Expect = 3e-74
Identities = 145/228 (63%), Positives = 162/228 (71%)
Frame = +1
Query: 409 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN 588
MA+ VRL + LRKP+AW L G ++GT SHK CAS NRY+ FSSTKLN SNYKTLF N
Sbjct: 1 MAVPGVRLLTGALRKPDAWTRLWGVIQGTSSHKLCASWNRYLYFSSTKLNTSNYKTLFRN 60
Query: 589 IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXXXXXX 768
IFSLR P LL+SPE FPFS RLKSNINSKKS +K LQK +
Sbjct: 61 IFSLRLPELLVSPECYFPFSIRLKSNINSKKSTKKTLQKEADEEDSDEETSYPERSEQEE 120
Query: 769 XXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR 948
+P QSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR
Sbjct: 121 ELESEPGVAKDYKDLEKVVQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR 180
Query: 949 TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 1092
TVKVGDTLDL+ ++K TE VMRILLKKV EEKT+++K+RVVLRRW
Sbjct: 181 TVKVGDTLDLITGENKETGTEVVMRILLKKVYEEKTENDKHRVVLRRW 228
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,213,733
Number of extensions: 909117
Number of successful extensions: 3488
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3465
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 309
Effective length of database: 12,493,815
Effective search space: 3860588835
Effective search space used: 3860588835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003772
(1239 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926756.2| PREDICTED: uncharacterized protein C6orf203 ... 385 e-107
Alignment gi|XP_001926770.1| PREDICTED: uncharacterized protein C6orf203 ... 377 e-105
Alignment gi|XP_001926716.1| PREDICTED: uncharacterized protein C6orf203 ... 377 e-105
Alignment gi|XP_001926732.1| PREDICTED: uncharacterized protein C6orf203 ... 377 e-105
>ref|XP_001926756.2| PREDICTED: uncharacterized protein C6orf203 isoform 3 [Sus scrofa].
Length = 260
Score = 385 bits (989), Expect = e-107
Identities = 199/232 (85%), Positives = 199/232 (85%)
Frame = +1
Query: 397 VTYAMAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKT 576
VTYAMAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKT
Sbjct: 17 VTYAMAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKT 76
Query: 577 LFYNIFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXX 756
LFYNIFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKV HN
Sbjct: 77 LFYNIFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVEDEGDSDEGSDHNEMS 136
Query: 757 XXXXXXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLW 936
DDPS QSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLW
Sbjct: 137 EQEEELEDDPSVVKDYKDLDKVVQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLW 196
Query: 937 KKSRTVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 1092
KKSRTVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW
Sbjct: 197 KKSRTVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 248
>ref|XP_001926770.1| PREDICTED: uncharacterized protein C6orf203 isoform 4 [Sus scrofa].
Length = 240
Score = 377 bits (969), Expect = e-105
Identities = 195/228 (85%), Positives = 195/228 (85%)
Frame = +1
Query: 409 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN 588
MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN
Sbjct: 1 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN 60
Query: 589 IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXXXXXX 768
IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKV HN
Sbjct: 61 IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVEDEGDSDEGSDHNEMSEQEE 120
Query: 769 XXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR 948
DDPS QSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR
Sbjct: 121 ELEDDPSVVKDYKDLDKVVQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR 180
Query: 949 TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 1092
TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW
Sbjct: 181 TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 228
>ref|XP_001926716.1| PREDICTED: uncharacterized protein C6orf203 isoform 1 [Sus scrofa].
Length = 240
Score = 377 bits (969), Expect = e-105
Identities = 195/228 (85%), Positives = 195/228 (85%)
Frame = +1
Query: 409 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN 588
MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN
Sbjct: 1 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN 60
Query: 589 IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXXXXXX 768
IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKV HN
Sbjct: 61 IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVEDEGDSDEGSDHNEMSEQEE 120
Query: 769 XXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR 948
DDPS QSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR
Sbjct: 121 ELEDDPSVVKDYKDLDKVVQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR 180
Query: 949 TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 1092
TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW
Sbjct: 181 TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 228
>ref|XP_001926732.1| PREDICTED: uncharacterized protein C6orf203 isoform 2 [Sus scrofa].
Length = 240
Score = 377 bits (969), Expect = e-105
Identities = 195/228 (85%), Positives = 195/228 (85%)
Frame = +1
Query: 409 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN 588
MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN
Sbjct: 1 MAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYN 60
Query: 589 IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVXXXXXXXXXXXHNXXXXXXX 768
IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKV HN
Sbjct: 61 IFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVEDEGDSDEGSDHNEMSEQEE 120
Query: 769 XXXDDPSXXXXXXXXXXXXQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR 948
DDPS QSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR
Sbjct: 121 ELEDDPSVVKDYKDLDKVVQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSR 180
Query: 949 TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 1092
TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW
Sbjct: 181 TVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRW 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,294,927
Number of extensions: 707292
Number of successful extensions: 3207
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3189
Number of HSP's successfully gapped: 4
Length of query: 413
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 312
Effective length of database: 8,829,335
Effective search space: 2754752520
Effective search space used: 2754752520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003772
(1239 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 72 8e-10
>Sscrofa_Chr01
|| Length = 315321322
Score = 71.9 bits (36), Expect = 8e-10
Identities = 79/92 (85%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 589 attttctcactgagattcccagggcttttaatatctccagaatatattttcccattttca 648
|||||||||| |||| ||| ||| ||||| |||||| |||||||||||| |||||||
Sbjct: 193564170 attttctcacagagactcctaggatttttactatctctagaatatatttt-ccattttgc 193564228
Query: 649 acaagactcaaaagtaatataaactctaaaaa 680
| | |||| |||||||||||||||||||||||
Sbjct: 193564229 atatgacttaaaagtaatataaactctaaaaa 193564260
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,563,202
Number of extensions: 365
Number of successful extensions: 365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 1
Length of query: 1239
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1218
Effective length of database: 2,808,413,156
Effective search space: 3420647224008
Effective search space used: 3420647224008
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)