Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003800
(1361 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103454.1| ceroid-lipofuscinosis, neuronal 6, late infa... 547 e-156
>ref|NP_001103454.1| ceroid-lipofuscinosis, neuronal 6, late infantile, variant [Bos
taurus].
Length = 311
Score = 547 bits (1409), Expect = e-156
Identities = 266/304 (87%), Positives = 274/304 (90%)
Frame = +3
Query: 129 QQPGXXXXXXXXXXXSFLQARHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAML 308
+ PG SFLQARHSSVKADEAA TAPFHLDLWFYFTLQNW+LDFGRPIAML
Sbjct: 8 RHPGAAGGPGAQPGASFLQARHSSVKADEAAGTAPFHLDLWFYFTLQNWVLDFGRPIAML 67
Query: 309 VFPLEWFPLSKPSVGDYFHMAYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIH 488
VFPLEWFPL+KPSVGDYFHMAYNIITPFLLL+LIER PRTLPRS+IYVSIITFIMGASIH
Sbjct: 68 VFPLEWFPLNKPSVGDYFHMAYNIITPFLLLQLIERCPRTLPRSLIYVSIITFIMGASIH 127
Query: 489 LVGDSVNHRLIFSGYQNHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHSLWYIPFFL 668
LVGDSVNHRLIFSGYQNHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHS+WYIPFFL
Sbjct: 128 LVGDSVNHRLIFSGYQNHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHSMWYIPFFL 187
Query: 669 ILFMYFSGCFTPTKTESVMPGAALLLVVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLH 848
ILFMYFS CFTPTK ES MPGAALLLVVPSGLYYWYLVTEGQIFILFIFT FAMLALVLH
Sbjct: 188 ILFMYFSSCFTPTKAESSMPGAALLLVVPSGLYYWYLVTEGQIFILFIFTSFAMLALVLH 247
Query: 849 QKRKRLFLDSNGLFLFYSFAITXXXXXXXXXXXXNDPVLRKKYPGVIYVPEPWAFYTLHV 1028
QKRKRLFLDSNGLFLFYSFA+T NDPVLRKKYPGVIYVPEPWAFYTLHV
Sbjct: 248 QKRKRLFLDSNGLFLFYSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPWAFYTLHV 307
Query: 1029 SSRH 1040
SS+H
Sbjct: 308 SSQH 311
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,372,195
Number of extensions: 1047913
Number of successful extensions: 3634
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3612
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 347
Effective length of database: 14,174,046
Effective search space: 4918393962
Effective search space used: 4918393962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003800
(1361 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001011888.1| ceroid-lipofuscinosis neuronal protein 6 hom... 540 e-153
>ref|NP_001011888.1| ceroid-lipofuscinosis neuronal protein 6 homolog [Canis lupus
familiaris].
Length = 312
Score = 540 bits (1390), Expect = e-153
Identities = 260/303 (85%), Positives = 271/303 (89%)
Frame = +3
Query: 129 QQPGXXXXXXXXXXXSFLQARHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAML 308
Q PG SFLQARHSS KADEA TAPFHLDLWFYFTLQNW+LDFGRPIAML
Sbjct: 9 QHPGAAGGAGAQPGASFLQARHSSGKADEAVGTAPFHLDLWFYFTLQNWVLDFGRPIAML 68
Query: 309 VFPLEWFPLSKPSVGDYFHMAYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIH 488
VFPLEWFPL+KPSVGDYFHMAYNIITPFLLLKLIERSPRTLPRS+IYVSIITF+MGASIH
Sbjct: 69 VFPLEWFPLNKPSVGDYFHMAYNIITPFLLLKLIERSPRTLPRSVIYVSIITFVMGASIH 128
Query: 489 LVGDSVNHRLIFSGYQNHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHSLWYIPFFL 668
LVGDSVNHRL+FSGYQ+HLSVRENPIIKNL PETLIDSFELLYYYDEYLGH +WY+PFFL
Sbjct: 129 LVGDSVNHRLLFSGYQHHLSVRENPIIKNLSPETLIDSFELLYYYDEYLGHCMWYVPFFL 188
Query: 669 ILFMYFSGCFTPTKTESVMPGAALLLVVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLH 848
ILF+YFSGCFTPTK ES MPGAALLL +PSGLYYWYLVTEGQIFILFIFTFFAMLALVLH
Sbjct: 189 ILFIYFSGCFTPTKAESSMPGAALLLAMPSGLYYWYLVTEGQIFILFIFTFFAMLALVLH 248
Query: 849 QKRKRLFLDSNGLFLFYSFAITXXXXXXXXXXXXNDPVLRKKYPGVIYVPEPWAFYTLHV 1028
QKRKRLFLDSNGLFLFYSFA+T NDPVLRKKYPGVIYVPEPWAFYTLHV
Sbjct: 249 QKRKRLFLDSNGLFLFYSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPWAFYTLHV 308
Query: 1029 SSR 1037
SSR
Sbjct: 309 SSR 311
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,774,827
Number of extensions: 1036802
Number of successful extensions: 3518
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3484
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 347
Effective length of database: 15,340,888
Effective search space: 5323288136
Effective search space used: 5323288136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003800
(1361 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060352.1| ceroid-lipofuscinosis neuronal protein 6 [Homo ... 531 e-151
>ref|NP_060352.1| ceroid-lipofuscinosis neuronal protein 6 [Homo sapiens].
Length = 311
Score = 531 bits (1367), Expect = e-151
Identities = 255/289 (88%), Positives = 266/289 (92%)
Frame = +3
Query: 174 SFLQARHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAMLVFPLEWFPLSKPSVG 353
SFLQARH SV ADEAA TAPFHLDLWFYFTLQNW+LDFGRPIAMLVFPLEWFPL+KPSVG
Sbjct: 23 SFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDFGRPIAMLVFPLEWFPLNKPSVG 82
Query: 354 DYFHMAYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIHLVGDSVNHRLIFSGY 533
DYFHMAYN+ITPFLLLKLIERSPRTLPRS+ YVSII FIMGASIHLVGDSVNHRL+FSGY
Sbjct: 83 DYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIFIMGASIHLVGDSVNHRLLFSGY 142
Query: 534 QNHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHSLWYIPFFLILFMYFSGCFTPTKT 713
Q+HLSVRENPIIKNLKPETLIDSFELLYYYDEYLGH +WYIPFFLILFMYFSGCFT +K
Sbjct: 143 QHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCMWYIPFFLILFMYFSGCFTASKA 202
Query: 714 ESVMPGAALLLVVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQKRKRLFLDSNGLFL 893
ES++PG ALLLV PSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQKRKRLFLDSNGLFL
Sbjct: 203 ESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQKRKRLFLDSNGLFL 262
Query: 894 FYSFAITXXXXXXXXXXXXNDPVLRKKYPGVIYVPEPWAFYTLHVSSRH 1040
F SFA+T NDPVLRKKYPGVIYVPEPWAFYTLHVSSRH
Sbjct: 263 FSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPWAFYTLHVSSRH 311
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,967,541
Number of extensions: 1020682
Number of successful extensions: 3770
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3732
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 347
Effective length of database: 14,802,980
Effective search space: 5136634060
Effective search space used: 5136634060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003800
(1361 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028347.1| ceroid-lipofuscinosis, neuronal 6 [Mus muscu... 520 e-148
>ref|NP_001028347.1| ceroid-lipofuscinosis, neuronal 6 [Mus musculus].
Length = 308
Score = 520 bits (1340), Expect = e-148
Identities = 248/288 (86%), Positives = 264/288 (91%)
Frame = +3
Query: 174 SFLQARHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAMLVFPLEWFPLSKPSVG 353
+F+QARH SVKA++ TAPFHLDLWFYFTLQNW+LDFGRPIAMLVFP++WFPL+KPSVG
Sbjct: 20 AFVQARHGSVKAEDKDRTAPFHLDLWFYFTLQNWVLDFGRPIAMLVFPIQWFPLNKPSVG 79
Query: 354 DYFHMAYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIHLVGDSVNHRLIFSGY 533
DYFHM YNIITPFLLLKLIERSPRTLPRS++YVSIITFIMGASIHLVGDSVNHRL+FSGY
Sbjct: 80 DYFHMTYNIITPFLLLKLIERSPRTLPRSIVYVSIITFIMGASIHLVGDSVNHRLLFSGY 139
Query: 534 QNHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHSLWYIPFFLILFMYFSGCFTPTKT 713
Q+HLSVRENPIIKNLKPETLIDSFELLYYYDEYLGH +WYIPFFLILFMYFSGCFT K
Sbjct: 140 QHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCMWYIPFFLILFMYFSGCFTTCKA 199
Query: 714 ESVMPGAALLLVVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQKRKRLFLDSNGLFL 893
ES MPG ALLLVVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQKR+RLFLDSNGLFL
Sbjct: 200 ESHMPGPALLLVVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQKRRRLFLDSNGLFL 259
Query: 894 FYSFAITXXXXXXXXXXXXNDPVLRKKYPGVIYVPEPWAFYTLHVSSR 1037
YSFA+T NDPVLRKKYPGVIYVPEPWAFYTLHVSS+
Sbjct: 260 LYSFALTLSLVALWVAWLWNDPVLRKKYPGVIYVPEPWAFYTLHVSSQ 307
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,579,973
Number of extensions: 865102
Number of successful extensions: 3128
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3101
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 348
Effective length of database: 12,463,779
Effective search space: 4337395092
Effective search space used: 4337395092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003800
(1361 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230543.1| ceroid-lipofuscinosis neuronal protein 6 [Su... 570 e-163
Alignment gi|XP_003361756.1| PREDICTED: ceroid-lipofuscinosis neuronal pr... 210 2e-54
>ref|NP_001230543.1| ceroid-lipofuscinosis neuronal protein 6 [Sus scrofa].
Length = 312
Score = 570 bits (1468), Expect = e-163
Identities = 280/304 (92%), Positives = 281/304 (92%)
Frame = +3
Query: 129 QQPGXXXXXXXXXXXSFLQARHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAML 308
QQPG SFLQARHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAML
Sbjct: 9 QQPGAAGGPGAQPGASFLQARHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAML 68
Query: 309 VFPLEWFPLSKPSVGDYFHMAYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIH 488
VFPLEWFPLSKPSVGDYFHMAYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIH
Sbjct: 69 VFPLEWFPLSKPSVGDYFHMAYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIH 128
Query: 489 LVGDSVNHRLIFSGYQNHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHSLWYIPFFL 668
LVGDSVNHRLIFSGYQNHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHSLWYIPFFL
Sbjct: 129 LVGDSVNHRLIFSGYQNHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHSLWYIPFFL 188
Query: 669 ILFMYFSGCFTPTKTESVMPGAALLLVVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLH 848
ILFMYFSGCFTPTKTESVMPGAALLLVVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLH
Sbjct: 189 ILFMYFSGCFTPTKTESVMPGAALLLVVPSGLYYWYLVTEGQIFILFIFTFFAMLALVLH 248
Query: 849 QKRKRLFLDSNGLFLFYSFAITXXXXXXXXXXXXNDPVLRKKYPGVIYVPEPWAFYTLHV 1028
QKR+RLFLDSNGLFLFYSFAIT NDPVLRKKYPGVIYVPEPWAFYTLHV
Sbjct: 249 QKRRRLFLDSNGLFLFYSFAITLLLVALWVAWLWNDPVLRKKYPGVIYVPEPWAFYTLHV 308
Query: 1029 SSRH 1040
SSRH
Sbjct: 309 SSRH 312
>ref|XP_003361756.1| PREDICTED: ceroid-lipofuscinosis neuronal protein 6 homolog [Sus
scrofa].
Length = 422
Score = 210 bits (534), Expect = 2e-54
Identities = 101/101 (100%), Positives = 101/101 (100%)
Frame = +3
Query: 189 RHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAMLVFPLEWFPLSKPSVGDYFHM 368
RHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAMLVFPLEWFPLSKPSVGDYFHM
Sbjct: 51 RHSSVKADEAASTAPFHLDLWFYFTLQNWILDFGRPIAMLVFPLEWFPLSKPSVGDYFHM 110
Query: 369 AYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIHL 491
AYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIHL
Sbjct: 111 AYNIITPFLLLKLIERSPRTLPRSMIYVSIITFIMGASIHL 151
Score = 191 bits (486), Expect = 6e-49
Identities = 99/129 (76%), Positives = 102/129 (79%), Gaps = 3/129 (2%)
Frame = +3
Query: 621 YDEYLGHSLW---YIPFFLILFMYFSGCFTPTKTESVMPGAALLLVVPSGLYYWYLVTEG 791
Y + G W YIPFFLILFMYFSGCFTPTKTESVMPGAALLLVVPSGLYYWYLVTEG
Sbjct: 278 YKKGWGRGPWVGRYIPFFLILFMYFSGCFTPTKTESVMPGAALLLVVPSGLYYWYLVTEG 337
Query: 792 QIFILFIFTFFAMLALVLHQKRKRLFLDSNGLFLFYSFAITXXXXXXXXXXXXNDPVLRK 971
QIFILFIFTFFAMLALVLHQKRKRLFLDSNGLFLFYSFAIT NDP LR
Sbjct: 338 QIFILFIFTFFAMLALVLHQKRKRLFLDSNGLFLFYSFAITLLLVALWVAWLWNDPALRP 397
Query: 972 KYPGVIYVP 998
+ G+I P
Sbjct: 398 EEGGLILGP 406
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,920,793
Number of extensions: 706245
Number of successful extensions: 2446
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2433
Number of HSP's successfully gapped: 3
Length of query: 453
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 351
Effective length of database: 8,804,438
Effective search space: 3090357738
Effective search space used: 3090357738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003800
(1361 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 644 0.0
gb|JH118886.1| Sus scrofa unplaced genomic scaffold ChrUScaf3148 430 e-118
>Sscrofa_Chr01
|| Length = 315321322
Score = 644 bits (325), Expect = 0.0
Identities = 325/325 (100%)
Strand = Plus / Minus
Query: 772 ggtacctggtcaccgagggccagatcttcatcctcttcatcttcaccttcttcgcgatgc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183879973 ggtacctggtcaccgagggccagatcttcatcctcttcatcttcaccttcttcgcgatgc 183879914
Query: 832 tggccctggtcctgcaccagaagcgcaagcgcctcttcttggacagcaacggcctcttcc 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183879913 tggccctggtcctgcaccagaagcgcaagcgcctcttcttggacagcaacggcctcttcc 183879854
Query: 892 tcttctactcctttgccatcacgctcctgctcgtagcgctctgggttgcctggctgtgga 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183879853 tcttctactcctttgccatcacgctcctgctcgtagcgctctgggttgcctggctgtgga 183879794
Query: 952 atgaccctgtactaaggaagaagtacccaggtgtcatctacgtccctgagccctgggcct 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183879793 atgaccctgtactaaggaagaagtacccaggtgtcatctacgtccctgagccctgggcct 183879734
Query: 1012 tctacacgctccatgtcagcagccgacactgagcccccggccctggctgctggtgctctg 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183879733 tctacacgctccatgtcagcagccgacactgagcccccggccctggctgctggtgctctg 183879674
Query: 1072 ccgggtgggaggtgggccattgagg 1096
|||||||||||||||||||||||||
Sbjct: 183879673 ccgggtgggaggtgggccattgagg 183879649
Score = 430 bits (217), Expect = e-118
Identities = 220/221 (99%)
Strand = Plus / Minus
Query: 1141 cgtggctgagagcacgggtgcgtgagtttgcgttgtgcacatggatggggtgtgtgcgtg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183879604 cgtggctgagagcacgggtgcgtgagtttgcgttgtgcacatggatggggtgtgtgcgtg 183879545
Query: 1201 tgctggcttgtgcacgtacagtgagtgtcactgtgagagtcacttgttttggtcaagtct 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183879544 tgctggcttgtgcacgtacagtgagtgtcactgtgagagtcacttgttttggtcaagtct 183879485
Query: 1261 ctgcggtttggctcttctcaggacgggatctggtttgaggcagtgtgccccggccaggcc 1320
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 183879484 ctgcggtttggctcttctcaggacgggatctggtttgaggcagtgtgtcccggccaggcc 183879425
Query: 1321 ctgggccctgtcctcctgtgcacctgactggagtcaggccc 1361
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 183879424 ctgggccctgtcctcctgtgcacctgactggagtcaggccc 183879384
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 403 agctcatcgagcggtccccccgcaccctgccacgctccatgatctacgtcagcatcatca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183883949 agctcatcgagcggtccccccgcaccctgccacgctccatgatctacgtcagcatcatca 183883890
Query: 463 cctttatcatgggcgccagcatccacctggtgggcgactccgtaaaccaccgcctgatct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183883889 cctttatcatgggcgccagcatccacctggtgggcgactccgtaaaccaccgcctgatct 183883830
Query: 523 tcagcggctaccagaaccacctgtcggtccgagagaaccctatcatcaagaatctcaagc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183883829 tcagcggctaccagaaccacctgtcggtccgagagaaccctatcatcaagaatctcaagc 183883770
Query: 583 cagagacgctg 593
|||||||||||
Sbjct: 183883769 cagagacgctg 183883759
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 649 ggtacatccccttcttcctcatcctcttcatgtacttcagcggctgcttcactcccacca 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183881867 ggtacatccccttcttcctcatcctcttcatgtacttcagcggctgcttcactcccacca 183881808
Query: 709 aaactgagagtgtgatgccgggggcggccctgctcctggtggtgcccagtggcctgtact 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183881807 aaactgagagtgtgatgccgggggcggccctgctcctggtggtgcccagtggcctgtact 183881748
Query: 769 actggt 774
||||||
Sbjct: 183881747 actggt 183881742
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 305 gctggtgttccctcttgaatggtttccgctcagcaagcccagtgtgggggactactttca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183885296 gctggtgttccctcttgaatggtttccgctcagcaagcccagtgtgggggactactttca 183885237
Query: 365 catggcctacaacatcatcacaccctttctcctgctcaag 404
||||||||||||||||||||||||||||||||||||||||
Sbjct: 183885236 catggcctacaacatcatcacaccctttctcctgctcaag 183885197
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 593 gatcgactcctttgagctgctctactactacgacgagtacctgggccactccttgtggt 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183883445 gatcgactcctttgagctgctctactactacgacgagtacctgggccactccttgtggt 183883387
>gb|JH118886.1| Sus scrofa unplaced genomic scaffold ChrUScaf3148
Length = 187201
Score = 430 bits (217), Expect = e-118
Identities = 220/221 (99%)
Strand = Plus / Plus
Query: 1141 cgtggctgagagcacgggtgcgtgagtttgcgttgtgcacatggatggggtgtgtgcgtg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24040 cgtggctgagagcacgggtgcgtgagtttgcgttgtgcacatggatggggtgtgtgcgtg 24099
Query: 1201 tgctggcttgtgcacgtacagtgagtgtcactgtgagagtcacttgttttggtcaagtct 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24100 tgctggcttgtgcacgtacagtgagtgtcactgtgagagtcacttgttttggtcaagtct 24159
Query: 1261 ctgcggtttggctcttctcaggacgggatctggtttgaggcagtgtgccccggccaggcc 1320
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24160 ctgcggtttggctcttctcaggacgggatctggtttgaggcagtgtgtcccggccaggcc 24219
Query: 1321 ctgggccctgtcctcctgtgcacctgactggagtcaggccc 1361
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 24220 ctgggccctgtcctcctgtgcacctgactggagtcaggccc 24260
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 772 ggtacctggtcaccgagggccagatcttcatcctcttcatcttcaccttcttcgcgatgc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23598 ggtacctggtcaccgagggccagatcttcatcctcttcatcttcaccttcttcgcgatgc 23657
Query: 832 tggccctggtcctgcaccagaagcgcaagcgcctcttcttggacagcaacggcctcttcc 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23658 tggccctggtcctgcaccagaagcgcaagcgcctcttcttggacagcaacggcctcttcc 23717
Query: 892 tcttctactcctttgccatcacgctcctgctcgtagcgctctgggttgcctggctgtgga 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23718 tcttctactcctttgccatcacgctcctgctcgtagcgctctgggttgcctggctgtgga 23777
Query: 952 atgaccctgtac 963
||||||||||||
Sbjct: 23778 atgaccctgtac 23789
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 187 ccaggcacagctccgtcaaggctgatgaggctgccagcacagctcccttccaccttgatc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15697 ccaggcacagctccgtcaaggctgatgaggctgccagcacagctcccttccaccttgatc 15756
Query: 247 tctggttctacttcacactgcagaactggattctggactttggccgccccattgccatg 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15757 tctggttctacttcacactgcagaactggattctggactttggccgccccattgccatg 15815
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 991 acgtccctgagccctgggccttctacacgctccatgtcagcagccgacactgagcccccg 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23890 acgtccctgagccctgggccttctacacgctccatgtcagcagccgacactgagcccccg 23949
Query: 1051 gccctggctgctggtgctctgccgggtgggaggtgggccattgagg 1096
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23950 gccctggctgctggtgctctgccgggtgggaggtgggccattgagg 23995
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 305 gctggtgttccctcttgaatggtttccgctcagcaagcccagtgtgggggactactttca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19897 gctggtgttccctcttgaatggtttccgctcagcaagcccagtgtgggggactactttca 19956
Query: 365 catggcctacaacatcatcacaccctttctcctgctcaag 404
||||||||||||||||||||||||||||||||||||||||
Sbjct: 19957 catggcctacaacatcatcacaccctttctcctgctcaag 19996
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 403 agctcatcgagcggtccccccgcaccctgccacgctccatgatctacgtcagcatcatca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21221 agctcatcgagcggtccccccgcaccctgccacgctccatgatctacgtcagcatcatca 21280
Query: 463 cctttatcatgggcgccagcatccacctggtg 494
||||||||||||||||||||||||||||||||
Sbjct: 21281 cctttatcatgggcgccagcatccacctggtg 21312
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,465,294
Number of extensions: 263
Number of successful extensions: 263
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 12
Length of query: 1361
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1340
Effective length of database: 2,808,413,156
Effective search space: 3763273629040
Effective search space used: 3763273629040
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)