Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003806
(1029 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029406.1| solute carrier family 13 member 2 [Bos tauru... 418 e-123
Alignment gi|XP_002695809.1| PREDICTED: solute carrier family 13 (sodium-... 230 4e-65
Alignment gi|XP_869690.2| PREDICTED: solute carrier family 13 (sodium-dep... 230 4e-65
Alignment gi|NP_001178375.1| solute carrier family 13 member 5 [Bos tauru... 230 4e-65
Alignment gi|XP_002695810.1| PREDICTED: solute carrier family 13 (sodium-... 230 4e-65
Alignment gi|NP_001073757.1| solute carrier family 13 member 3 [Bos tauru... 214 1e-58
Alignment gi|NP_001180148.1| solute carrier family 13 member 1 [Bos tauru... 188 7e-50
Alignment gi|XP_002686958.1| PREDICTED: solute carrier family 13 (sodium/... 188 7e-50
Alignment gi|NP_001070352.1| solute carrier family 13 member 4 [Bos tauru... 157 2e-41
>ref|NP_001029406.1| solute carrier family 13 member 2 [Bos taurus].
Length = 592
Score = 418 bits (1074), Expect(2) = e-123
Identities = 213/260 (81%), Positives = 226/260 (86%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQGLWAYR Y TKEA CAYTIILMALLWCTEALPLAVTA
Sbjct: 1 MATCWQGLWAYRFYLIVFFLPIFLLPLPILVPTKEACCAYTIILMALLWCTEALPLAVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
FLPVI+FPMMGIM AS VS+EYLKD+NILFIGGM+VA+AVE WNLHKRIALRVLLIIGVR
Sbjct: 61 FLPVIMFPMMGIMTASTVSLEYLKDTNILFIGGMMVALAVETWNLHKRIALRVLLIIGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALLILGFM+VTAFLSMWISNTATTAMM+PIAHAVLEQLHK+P +DVEEGR NPAFELQ
Sbjct: 121 PALLILGFMLVTAFLSMWISNTATTAMMLPIAHAVLEQLHKMPTDRDVEEGRHNPAFELQ 180
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
E Q+EETKLDEKDNKQD P PSESKTQQN+EQLRF+QG+SLCVCYSASIGGIATL
Sbjct: 181 E---QKEETKLDEKDNKQDCPALPTPSESKTQQNKEQLRFSQGLSLCVCYSASIGGIATL 237
Query: 796 TGTTPNLVLQGQVNSIFPRN 855
TGTTPNLVLQGQVNSIFPRN
Sbjct: 238 TGTTPNLVLQGQVNSIFPRN 257
Score = 43.1 bits (100), Expect(2) = e-123
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASG--TK*RRRASGLR 1019
P +VVNFASWFGFAFP M+ GF+FR+ G +K + RA+
Sbjct: 255 PRNGNVVNFASWFGFAFPAMIILLLLSWVWLQILFLGFDFRKNFGLGEQSKNQERAA-FE 313
Query: 1020 VIR 1028
VIR
Sbjct: 314 VIR 316
>ref|XP_002695809.1| PREDICTED: solute carrier family 13 (sodium-dependent citrate
transporter), member 5 isoform 1 [Bos taurus].
Length = 566
Score = 230 bits (586), Expect(2) = 4e-65
Identities = 118/223 (52%), Positives = 149/223 (66%), Gaps = 2/223 (0%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY II+MA+ WCTE +PLAVTA LP +LFP+ I+D +VS++Y+KD+N+LF+GG++VA
Sbjct: 38 CAYIIIIMAVYWCTEVIPLAVTALLPALLFPLFKILDFKQVSIQYMKDTNMLFLGGLIVA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
+AVEHW LHKRIALR LL +G +PA L+LGFM TAFLSMWISNTATTAMMVPI AVL+
Sbjct: 98 VAVEHWKLHKRIALRTLLWVGTKPAQLMLGFMCATAFLSMWISNTATTAMMVPIVEAVLQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSE--SKTQQNE 720
Q+ + G +L EK +LP E S QQ
Sbjct: 158 QMEATSAATEASLG----------------TLELAEKGKAGELPGNQTTLEGPSMRQQEV 201
Query: 721 EQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+ + M+LC+CYSASIGG ATLTGT PN+VL GQ+ +FP
Sbjct: 202 NRKNVCKAMTLCICYSASIGGTATLTGTGPNVVLLGQMQELFP 244
Score = 37.4 bits (85), Expect(2) = 4e-65
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 825 GPSQLDLPPKPHVVNFASWFGFAFPTMV 908
G Q P +VNFASWFGFAFP M+
Sbjct: 237 GQMQELFPDSKDIVNFASWFGFAFPNML 264
>ref|XP_869690.2| PREDICTED: solute carrier family 13 (sodium-dependent citrate
transporter), member 5 isoform 2 [Bos taurus].
Length = 566
Score = 230 bits (586), Expect(2) = 4e-65
Identities = 118/223 (52%), Positives = 149/223 (66%), Gaps = 2/223 (0%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY II+MA+ WCTE +PLAVTA LP +LFP+ I+D +VS++Y+KD+N+LF+GG++VA
Sbjct: 38 CAYIIIIMAVYWCTEVIPLAVTALLPALLFPLFKILDFKQVSIQYMKDTNMLFLGGLIVA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
+AVEHW LHKRIALR LL +G +PA L+LGFM TAFLSMWISNTATTAMMVPI AVL+
Sbjct: 98 VAVEHWKLHKRIALRTLLWVGTKPAQLMLGFMCATAFLSMWISNTATTAMMVPIVEAVLQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSE--SKTQQNE 720
Q+ + G +L EK +LP E S QQ
Sbjct: 158 QMEATSAATEASLG----------------TLELAEKGKAGELPGNQTTLEGPSMRQQEV 201
Query: 721 EQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+ + M+LC+CYSASIGG ATLTGT PN+VL GQ+ +FP
Sbjct: 202 NRKNVCKAMTLCICYSASIGGTATLTGTGPNVVLLGQMQELFP 244
Score = 37.4 bits (85), Expect(2) = 4e-65
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 825 GPSQLDLPPKPHVVNFASWFGFAFPTMV 908
G Q P +VNFASWFGFAFP M+
Sbjct: 237 GQMQELFPDSKDIVNFASWFGFAFPNML 264
>ref|NP_001178375.1| solute carrier family 13 member 5 [Bos taurus].
Length = 520
Score = 230 bits (586), Expect(2) = 4e-65
Identities = 118/223 (52%), Positives = 149/223 (66%), Gaps = 2/223 (0%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY II+MA+ WCTE +PLAVTA LP +LFP+ I+D +VS++Y+KD+N+LF+GG++VA
Sbjct: 38 CAYIIIIMAVYWCTEVIPLAVTALLPALLFPLFKILDFKQVSIQYMKDTNMLFLGGLIVA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
+AVEHW LHKRIALR LL +G +PA L+LGFM TAFLSMWISNTATTAMMVPI AVL+
Sbjct: 98 VAVEHWKLHKRIALRTLLWVGTKPAQLMLGFMCATAFLSMWISNTATTAMMVPIVEAVLQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSE--SKTQQNE 720
Q+ + G +L EK +LP E S QQ
Sbjct: 158 QMEATSAATEASLG----------------TLELAEKGKAGELPGNQTTLEGPSMRQQEV 201
Query: 721 EQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+ + M+LC+CYSASIGG ATLTGT PN+VL GQ+ +FP
Sbjct: 202 NRKNVCKAMTLCICYSASIGGTATLTGTGPNVVLLGQMQELFP 244
Score = 37.4 bits (85), Expect(2) = 4e-65
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 825 GPSQLDLPPKPHVVNFASWFGFAFPTMV 908
G Q P +VNFASWFGFAFP M+
Sbjct: 237 GQMQELFPDSKDIVNFASWFGFAFPNML 264
>ref|XP_002695810.1| PREDICTED: solute carrier family 13 (sodium-dependent citrate
transporter), member 5 isoform 2 [Bos taurus].
Length = 520
Score = 230 bits (586), Expect(2) = 4e-65
Identities = 118/223 (52%), Positives = 149/223 (66%), Gaps = 2/223 (0%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY II+MA+ WCTE +PLAVTA LP +LFP+ I+D +VS++Y+KD+N+LF+GG++VA
Sbjct: 38 CAYIIIIMAVYWCTEVIPLAVTALLPALLFPLFKILDFKQVSIQYMKDTNMLFLGGLIVA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
+AVEHW LHKRIALR LL +G +PA L+LGFM TAFLSMWISNTATTAMMVPI AVL+
Sbjct: 98 VAVEHWKLHKRIALRTLLWVGTKPAQLMLGFMCATAFLSMWISNTATTAMMVPIVEAVLQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSE--SKTQQNE 720
Q+ + G +L EK +LP E S QQ
Sbjct: 158 QMEATSAATEASLG----------------TLELAEKGKAGELPGNQTTLEGPSMRQQEV 201
Query: 721 EQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+ + M+LC+CYSASIGG ATLTGT PN+VL GQ+ +FP
Sbjct: 202 NRKNVCKAMTLCICYSASIGGTATLTGTGPNVVLLGQMQELFP 244
Score = 37.4 bits (85), Expect(2) = 4e-65
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 825 GPSQLDLPPKPHVVNFASWFGFAFPTMV 908
G Q P +VNFASWFGFAFP M+
Sbjct: 237 GQMQELFPDSKDIVNFASWFGFAFPNML 264
>ref|NP_001073757.1| solute carrier family 13 member 3 [Bos taurus].
Length = 602
Score = 214 bits (546), Expect(2) = 1e-58
Identities = 113/267 (42%), Positives = 166/267 (62%), Gaps = 8/267 (2%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
+AT + +W+ RR KE C + I+LMA+ WCTEALPL+VTA
Sbjct: 4 LATVAKKVWSARRLLVLLFTPLVLLPVVFALPPKEGRCLFVILLMAVYWCTEALPLSVTA 63
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
LP++LFP +GI+ ++KV +Y D+N LF+ G+++A A+E WNLH+RIAL+VL++ GV+
Sbjct: 64 LLPIVLFPFLGILPSNKVCAQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKVLMLTGVQ 123
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQL--HKIPVGKDVEEGRGNPAFE 609
PA LILG M T+FLSMW+SNTA+TAMM+PIA+A+L+ L H+ KD+ A
Sbjct: 124 PARLILGMMATTSFLSMWLSNTASTAMMLPIANAILKSLFGHR-ESHKDLSWESEETAAA 182
Query: 610 LQE------PSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSA 771
+++ P+ Q ++KD ++ P + ++ E + +G + + YSA
Sbjct: 183 VRKNGLHAVPTEMQFIAGTEDKDCPEEAEAPTDLHPTSKKEEEYRRNIWKGFLISIPYSA 242
Query: 772 SIGGIATLTGTTPNLVLQGQVNSIFPR 852
SIGG ATLTGT PNL+L GQ+ S FP+
Sbjct: 243 SIGGTATLTGTAPNLILLGQLKSFFPQ 269
Score = 31.2 bits (69), Expect(2) = 1e-58
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMV 908
P+ VVNF SWF FAFP M+
Sbjct: 268 PQCDVVNFGSWFIFAFPLML 287
>ref|NP_001180148.1| solute carrier family 13 member 1 [Bos taurus].
Length = 597
Score = 188 bits (477), Expect(2) = 7e-50
Identities = 104/251 (41%), Positives = 150/251 (59%), Gaps = 25/251 (9%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+KEA CAYT+ ++A+ W TEALPL++TA LP ++FPM GIM + +V+ Y KD ++L IG
Sbjct: 32 SKEAECAYTLFVIAIFWLTEALPLSITALLPGLMFPMFGIMTSKEVASAYFKDFHLLLIG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ +A ++E WNLHKRIALR+++++GV PA L LGFM TAFLSMW+SNT+T AM++PI
Sbjct: 92 VICLATSIEKWNLHKRIALRMVMMVGVNPAWLSLGFMSSTAFLSMWLSNTSTAAMVMPIV 151
Query: 532 HAVLEQLHKIPVGKDVE-------EGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAA 690
AV +Q+ I +VE G N A E+ E QE + EK PVP
Sbjct: 152 EAVAQQV--ISAEAEVEATQMTYFSGSTNQALEIDESINGQEANERKEKTK----PVPGY 205
Query: 691 PSESKTQQNEEQLRFTQG------------------MSLCVCYSASIGGIATLTGTTPNL 816
+++ ++ +L G M LC+ YS++IGG+ T+TGT+ NL
Sbjct: 206 SNDAGKISSKMELEKNSGTNSGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNL 265
Query: 817 VLQGQVNSIFP 849
+ N +P
Sbjct: 266 IFAEHFNMRYP 276
Score = 28.5 bits (62), Expect(2) = 7e-50
Identities = 13/46 (28%), Positives = 17/46 (36%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASG 986
P +NF SWF +FP + GFNF+ G
Sbjct: 276 PDCQCINFGSWFIMSFPAAIVILLLSWIWLQWFFLGFNFKEMFQCG 321
>ref|XP_002686958.1| PREDICTED: solute carrier family 13 (sodium/sulfate symporters),
member 1 [Bos taurus].
Length = 597
Score = 188 bits (477), Expect(2) = 7e-50
Identities = 104/251 (41%), Positives = 150/251 (59%), Gaps = 25/251 (9%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+KEA CAYT+ ++A+ W TEALPL++TA LP ++FPM GIM + +V+ Y KD ++L IG
Sbjct: 32 SKEAECAYTLFVIAIFWLTEALPLSITALLPGLMFPMFGIMTSKEVASAYFKDFHLLLIG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ +A ++E WNLHKRIALR+++++GV PA L LGFM TAFLSMW+SNT+T AM++PI
Sbjct: 92 VICLATSIEKWNLHKRIALRMVMMVGVNPAWLSLGFMSSTAFLSMWLSNTSTAAMVMPIV 151
Query: 532 HAVLEQLHKIPVGKDVE-------EGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAA 690
AV +Q+ I +VE G N A E+ E QE + EK PVP
Sbjct: 152 EAVAQQV--ISAEAEVEATQMTYFSGSTNQALEIDESINGQEANERKEKTK----PVPGY 205
Query: 691 PSESKTQQNEEQLRFTQG------------------MSLCVCYSASIGGIATLTGTTPNL 816
+++ ++ +L G M LC+ YS++IGG+ T+TGT+ NL
Sbjct: 206 SNDAGKISSKMELEKNSGTNSGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNL 265
Query: 817 VLQGQVNSIFP 849
+ N +P
Sbjct: 266 IFAEHFNMRYP 276
Score = 28.5 bits (62), Expect(2) = 7e-50
Identities = 13/46 (28%), Positives = 17/46 (36%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASG 986
P +NF SWF +FP + GFNF+ G
Sbjct: 276 PDCQCINFGSWFIMSFPAAIVILLLSWIWLQWFFLGFNFKEMFQCG 321
>ref|NP_001070352.1| solute carrier family 13 member 4 [Bos taurus].
Length = 626
Score = 157 bits (397), Expect(2) = 2e-41
Identities = 90/273 (32%), Positives = 142/273 (52%), Gaps = 47/273 (17%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+ EA CAY +I+ A+ W +EA+PL A +P L+P G++ +S+V+ EY K++ +L +G
Sbjct: 32 SSEASCAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSSEVAGEYFKNTTLLLVG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ VA AVE WNLHKRIALR++L+ G +P +L+L FM T LSMW+SNT+TTAM++PI
Sbjct: 92 VICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTLLSMWLSNTSTTAMVMPIV 151
Query: 532 HAVLEQL----------------HKIPVGKDVEEGRGNPAFEL---QEPSPQQEETKLDE 654
AVL++L P+ DV + P EL E + + L +
Sbjct: 152 EAVLQELVSAEEEQLVAGNSSAEEAEPINLDVNNSQ--PPLELIFVNEDTSNADFNSLMQ 209
Query: 655 KDNKQDLPV----------------------PAAPSESKTQQNEEQLRFTQGMSLCVC-- 762
N+ +P P S+ Q+ + + + +C C
Sbjct: 210 NKNRNGVPTVTNSAETANLPGRKQHPSQEKPPVLTPSSRNQELKRKYKSQHDQMICKCLS 269
Query: 763 ----YSASIGGIATLTGTTPNLVLQGQVNSIFP 849
Y+A+IGG+ T+ GT+ +L+ N+ +P
Sbjct: 270 LSISYAATIGGLTTIIGTSTSLIFLEHFNNQYP 302
Score = 30.8 bits (68), Expect(2) = 2e-41
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK 992
P VVNF +WF F+FP + G NF+ T + K
Sbjct: 302 PAAEVVNFGTWFLFSFPISLIMLVVSWFWMHWLFLGCNFKETCSLSKK 349
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,388,575
Number of extensions: 1250168
Number of successful extensions: 7019
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6948
Number of HSP's successfully gapped: 18
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003806
(1029 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_868153.1| PREDICTED: similar to Solute carrier family 13,... 382 e-113
Alignment gi|XP_548287.1| PREDICTED: similar to Solute carrier family 13,... 379 e-112
Alignment gi|XP_848573.1| PREDICTED: similar to solute carrier family 13 ... 231 8e-65
Alignment gi|XP_543034.2| PREDICTED: similar to Solute carrier family 13,... 212 3e-58
Alignment gi|XP_539548.2| PREDICTED: similar to solute carrier family 13 ... 172 1e-45
Alignment gi|XP_852780.1| PREDICTED: similar to Solute carrier family 13,... 158 5e-42
>ref|XP_868153.1| PREDICTED: similar to Solute carrier family 13, member 2 (Renal
sodium/dicarboxylate cotransporter) (Na(+)/dicarboxylate
cotransporter 1) (NaDC-1) isoform 2 [Canis familiaris].
Length = 597
Score = 382 bits (982), Expect(2) = e-113
Identities = 196/263 (74%), Positives = 212/263 (80%), Gaps = 3/263 (1%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQGLWAYR Y TKEAYCAY+IILMAL WCTEALPL VTA
Sbjct: 1 MATCWQGLWAYRSYLIVLLLPILLLPLPILIPTKEAYCAYSIILMALFWCTEALPLPVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
P+IL+PMMGIMDAS+V +EY KDSNILF+GG+L+AIAVEHWNLHKRIALRVLLIIGVR
Sbjct: 61 LFPIILYPMMGIMDASEVCIEYFKDSNILFVGGLLMAIAVEHWNLHKRIALRVLLIIGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALL+LGFM+VTAFLSMWISNTATTAMMVPIAHAVLEQLH KDVEEG NP FELQ
Sbjct: 121 PALLLLGFMLVTAFLSMWISNTATTAMMVPIAHAVLEQLHN--TSKDVEEGSDNPTFELQ 178
Query: 616 EPSPQQEETKLDEKD---NKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGI 786
E SPQ++ TKL EKD N Q P A SES Q EQLRF+QGMSLCVCYSASIGGI
Sbjct: 179 EGSPQKDVTKLGEKDEAHNGQAHPALPASSESTVWQKREQLRFSQGMSLCVCYSASIGGI 238
Query: 787 ATLTGTTPNLVLQGQVNSIFPRN 855
ATLTGTTPNLVLQGQVN++FP+N
Sbjct: 239 ATLTGTTPNLVLQGQVNALFPQN 261
Score = 46.6 bits (109), Expect(2) = e-113
Identities = 23/53 (43%), Positives = 27/53 (50%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK*RRR 1004
P +VVNFASWFGFAFPTM GFNFR+ G + + R
Sbjct: 259 PQNGNVVNFASWFGFAFPTMAILLLLSWLWLQILFLGFNFRKNFGFGGQAKER 311
>ref|XP_548287.1| PREDICTED: similar to Solute carrier family 13, member 2 (Renal
sodium/dicarboxylate cotransporter) (Na(+)/dicarboxylate
cotransporter 1) (NaDC-1) isoform 1 [Canis familiaris].
Length = 591
Score = 379 bits (973), Expect(2) = e-112
Identities = 194/260 (74%), Positives = 210/260 (80%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQGLWAYR Y TKEAYCAY+IILMAL WCTEALPL VTA
Sbjct: 1 MATCWQGLWAYRSYLIVLLLPILLLPLPILIPTKEAYCAYSIILMALFWCTEALPLPVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
P+IL+PMMGIMDAS+V +EY KDSNILF+GG+L+AIAVEHWNLHKRIALRVLLIIGVR
Sbjct: 61 LFPIILYPMMGIMDASEVCIEYFKDSNILFVGGLLMAIAVEHWNLHKRIALRVLLIIGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALL+LGFM+VTAFLSMWISNTATTAMMVPIAHAVLEQLH KDVEEG NP FELQ
Sbjct: 121 PALLLLGFMLVTAFLSMWISNTATTAMMVPIAHAVLEQLHN--TSKDVEEGSDNPTFELQ 178
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
E SPQ++ TKL DN Q P A SES Q EQLRF+QGMSLCVCYSASIGGIATL
Sbjct: 179 EGSPQKDVTKL---DNGQAHPALPASSESTVWQKREQLRFSQGMSLCVCYSASIGGIATL 235
Query: 796 TGTTPNLVLQGQVNSIFPRN 855
TGTTPNLVLQGQVN++FP+N
Sbjct: 236 TGTTPNLVLQGQVNALFPQN 255
Score = 46.6 bits (109), Expect(2) = e-112
Identities = 23/53 (43%), Positives = 27/53 (50%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK*RRR 1004
P +VVNFASWFGFAFPTM GFNFR+ G + + R
Sbjct: 253 PQNGNVVNFASWFGFAFPTMAILLLLSWLWLQILFLGFNFRKNFGFGGQAKER 305
>ref|XP_848573.1| PREDICTED: similar to solute carrier family 13 (sodium-dependent
citrate transporter), member 5 [Canis familiaris].
Length = 571
Score = 231 bits (588), Expect(2) = 8e-65
Identities = 120/224 (53%), Positives = 158/224 (70%), Gaps = 3/224 (1%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY IILMA+ WCTE +PLAVT+ LP +LFP++ I+D+ +V V+Y+KD+N+LF+GG+++A
Sbjct: 38 CAYVIILMAIYWCTEVIPLAVTSLLPAVLFPLLKILDSKQVCVQYMKDTNMLFLGGLIMA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
AVEHWNLHKRIALR LL +G +PA L+LGFM VTAFLSMWISNTATTAMMVPI A+L+
Sbjct: 98 AAVEHWNLHKRIALRTLLWVGAKPAQLMLGFMGVTAFLSMWISNTATTAMMVPIVEAMLQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSE--SKTQQNE 720
Q+ E G G +L +K+ +LP E S+ QQ +
Sbjct: 158 QMQ--ATSPATEAGLG--------------ALELSDKNKAGELPGSQVTFEGPSEVQQAD 201
Query: 721 -EQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
++ R + M+LCVCY+ASIGG ATLTGT PN+VL GQ++ +FP
Sbjct: 202 CDRRRICKAMTLCVCYAASIGGTATLTGTGPNMVLLGQMHELFP 245
Score = 35.8 bits (81), Expect(2) = 8e-65
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMV 908
P VVNFASWF FAFP MV
Sbjct: 245 PASKDVVNFASWFSFAFPNMV 265
>ref|XP_543034.2| PREDICTED: similar to Solute carrier family 13, member 3
(Sodium-dependent high-affinity dicarboxylate
transporter 2) (Na(+)/dicarboxylate cotransporter 3)
(NaDC-3) (hNaDC3) [Canis familiaris].
Length = 601
Score = 212 bits (540), Expect(2) = 3e-58
Identities = 116/265 (43%), Positives = 162/265 (61%), Gaps = 6/265 (2%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
+AT + +W+ RR KE C + I+LMA+ WCTEALPL+VTA
Sbjct: 4 LATVAKKVWSARRLLVLLLAPLALLPVVFALPPKEGRCLFVILLMAVYWCTEALPLSVTA 63
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
LP+ILFP +GI+ ++KV +Y D+N LF+ G+++A A+E WNLH+RIAL++L++ GV+
Sbjct: 64 LLPIILFPFLGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLAGVQ 123
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQL-HKIPVGKDV--EEGRGNPAF 606
PA LILG MV T+FLSMW+SNTA+TAMM+PIA A+L+ L + KD+ + A
Sbjct: 124 PARLILGMMVTTSFLSMWLSNTASTAMMLPIASAILKSLFSQKEAQKDLSWQSDENTAAV 183
Query: 607 ELQEPSPQQEETKLDEKDNKQDLPVPAAPSESKTQ-QNEEQLR--FTQGMSLCVCYSASI 777
P E + +D P AP + + EE+ R +G + + YSASI
Sbjct: 184 RRNGLHPVPTEMQFLASTEDKDCPEAEAPLDLLADCKKEEEYRRNIWKGFLISIPYSASI 243
Query: 778 GGIATLTGTTPNLVLQGQVNSIFPR 852
GG ATLTGT PNL+L GQ+ S FP+
Sbjct: 244 GGTATLTGTAPNLILLGQLKSFFPQ 268
Score = 32.3 bits (72), Expect(2) = 3e-58
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMV 908
P+ VVNF SWF FAFP MV
Sbjct: 267 PQCDVVNFGSWFIFAFPLMV 286
>ref|XP_539548.2| PREDICTED: similar to solute carrier family 13 (sodium/sulfate
symporters), member 1 [Canis familiaris].
Length = 596
Score = 172 bits (437), Expect(2) = 1e-45
Identities = 106/272 (38%), Positives = 148/272 (54%), Gaps = 24/272 (8%)
Frame = +1
Query: 106 YRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMM 285
YRR+ TKEA CAYT ++A LW TEALPL VTA LP +LFP+
Sbjct: 10 YRRFLLIVLPPLVLLPLPIIVRTKEAECAYTWAVVAALWLTEALPLPVTALLPGLLFPLF 69
Query: 286 GIMDASKVSVE-YLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFM 462
GI + +V Y KD ++L IG + +A ++E WNLH RIALR+++ +GV P L LG M
Sbjct: 70 GITASKEVVASAYFKDFHLLLIGVICLATSIEKWNLHTRIALRMVMTVGVNPTWLTLGLM 129
Query: 463 VVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEE-------GRGNPAFELQEP 621
TAFLSMW+SNT+T AM++PI AV +Q+ I +VE G N E+ E
Sbjct: 130 SSTAFLSMWLSNTSTAAMVMPIVEAVAQQI--ISAQAEVEATQMTSLGGSTNHGLEIDES 187
Query: 622 SPQQEETKLDEKDNKQDLPVP-----AAPSESKTQ-----------QNEEQLRFTQGMSL 753
QE + +EK +P P A SKT+ + ++ + M L
Sbjct: 188 VNGQETNERNEK----TIPAPGYGNDAGKISSKTEPEKNSDTGTKYRTKKDHMMCKLMCL 243
Query: 754 CVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
C+ YS++IGG+ T+TGT+ NL+ N+ +P
Sbjct: 244 CIAYSSTIGGLTTITGTSTNLIFSEHFNTRYP 275
Score = 29.6 bits (65), Expect(2) = 1e-45
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASG-TK*RRRASGLRVI 1025
P +NF SWF +FP V GFNF+ G TK ++ + VI
Sbjct: 275 PDCRCINFGSWFLLSFPAAVIILLLSWIWLQWLFLGFNFKEMFKCGKTKTAKQKACAEVI 334
Query: 1026 R 1028
+
Sbjct: 335 K 335
>ref|XP_852780.1| PREDICTED: similar to Solute carrier family 13, member 4
(Na(+)/sulfate cotransporter SUT-1) [Canis familiaris].
Length = 626
Score = 158 bits (400), Expect(2) = 5e-42
Identities = 92/274 (33%), Positives = 146/274 (53%), Gaps = 48/274 (17%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+ EA CAY +I+ A+ W +EA+PL A +P L+P G++ +S+V+ EY K++ +L +G
Sbjct: 32 SSEAACAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSSEVAAEYFKNTTLLLVG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ VA AVE WNLHKRIALR++L+ G +P +L+L FM T LSMW+SNT+TTAM++PI
Sbjct: 92 VICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTMLSMWLSNTSTTAMVMPIV 151
Query: 532 HAVLEQL----------------HKIPVGKDVEEGRGNPAFEL----QEPSPQQEETKLD 651
AVL++L P+ DV + P+ EL ++PS + +
Sbjct: 152 EAVLQELVSAEEEQLVAGNSSAEEAEPISLDVNNSQ--PSLELIFVNEDPSTADFASLMQ 209
Query: 652 EKDNKQDLPVPAAPSESKTQQNEEQLR----------------------------FTQGM 747
K N +P P ++ Q ++Q R + +
Sbjct: 210 NK-NLNGVPTVTNPVKTANPQGKKQHRSQEKPLVLIPGPRNQELNRKYKSQHDQMICKCL 268
Query: 748 SLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
SL + Y+A+IGG+ T+ GT+ +L+ N+ +P
Sbjct: 269 SLSISYAATIGGLTTIIGTSTSLIFLEHFNNQYP 302
Score = 32.0 bits (71), Expect(2) = 5e-42
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK 992
P VVNF +WF F+FP + G NFR T + K
Sbjct: 302 PAAEVVNFGTWFLFSFPISLIMLVVSWFWMHWLFLGCNFRETCSLSKK 349
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,199,538
Number of extensions: 1291036
Number of successful extensions: 7623
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7478
Number of HSP's successfully gapped: 12
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003806
(1029 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003975.1| solute carrier family 13 member 2 isoform b [Ho... 371 e-110
Alignment gi|NP_001139447.1| solute carrier family 13 member 2 isoform a ... 348 e-103
Alignment gi|NP_001139448.1| solute carrier family 13 member 2 isoform c ... 293 6e-87
Alignment gi|NP_808218.1| solute carrier family 13 member 5 isoform a [Ho... 231 3e-65
Alignment gi|NP_001137310.1| solute carrier family 13 member 5 isoform b ... 231 3e-65
Alignment gi|NP_073740.2| solute carrier family 13 member 3 isoform a [Ho... 219 2e-60
Alignment gi|NP_001011554.1| solute carrier family 13 member 3 isoform b ... 207 9e-57
Alignment gi|NP_001180269.1| solute carrier family 13 member 3 isoform d ... 207 9e-57
Alignment gi|NP_071889.2| solute carrier family 13 member 1 [Homo sapiens]. 187 5e-50
Alignment gi|NP_001180268.1| solute carrier family 13 member 3 isoform c ... 174 1e-43
>ref|NP_003975.1| solute carrier family 13 member 2 isoform b [Homo sapiens].
Length = 592
Score = 371 bits (953), Expect(3) = e-110
Identities = 187/260 (71%), Positives = 208/260 (80%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQ LWAYR Y +KEAYCAY IILMAL WCTEALPLAVTA
Sbjct: 1 MATCWQALWAYRSYLIVFFVPILLLPLPILVPSKEAYCAYAIILMALFWCTEALPLAVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
P+ILFPMMGI+DAS+V+VEYLKDSN+LF GG+LVAIAVEHWNLHKRIALRVLLI+GVR
Sbjct: 61 LFPLILFPMMGIVDASEVAVEYLKDSNLLFFGGLLVAIAVEHWNLHKRIALRVLLIVGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PA LILGFM+VTAFLSMWISNTAT+AMMVPIAHAVL+QLH +VEEG NP FELQ
Sbjct: 121 PAPLILGFMLVTAFLSMWISNTATSAMMVPIAHAVLDQLHSSQASSNVEEGSNNPTFELQ 180
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
EPSPQ+E TKL DN Q LPV +A SE + +++ L TQ MSLCVCYSASIGGIATL
Sbjct: 181 EPSPQKEVTKL---DNGQALPVTSASSEGRAHLSQKHLHLTQCMSLCVCYSASIGGIATL 237
Query: 796 TGTTPNLVLQGQVNSIFPRN 855
TGT PNLVLQGQ+NS+FP+N
Sbjct: 238 TGTAPNLVLQGQINSLFPQN 257
Score = 46.6 bits (109), Expect(3) = e-110
Identities = 23/49 (46%), Positives = 25/49 (51%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK 992
P +VVNFASWF FAFPTMV GFNFR+ G K
Sbjct: 255 PQNGNVVNFASWFSFAFPTMVILLLLAWLWLQILFLGFNFRKNFGIGEK 303
Score = 22.3 bits (46), Expect(3) = e-110
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 968 KNFGFGDQMKEKSE 1009
KNFG G++M+E+ +
Sbjct: 296 KNFGIGEKMQEQQQ 309
>ref|NP_001139447.1| solute carrier family 13 member 2 isoform a [Homo sapiens].
Length = 641
Score = 348 bits (893), Expect(3) = e-103
Identities = 187/309 (60%), Positives = 208/309 (67%), Gaps = 49/309 (15%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQ LWAYR Y +KEAYCAY IILMAL WCTEALPLAVTA
Sbjct: 1 MATCWQALWAYRSYLIVFFVPILLLPLPILVPSKEAYCAYAIILMALFWCTEALPLAVTA 60
Query: 256 FLPVILFPMMGIMDASK------------------------------------------- 306
P+ILFPMMGI+DAS+
Sbjct: 61 LFPLILFPMMGIVDASEIIQRPFPSSFESPGECQSVGMSVTASHNLGGTVGDSRVFPPLS 120
Query: 307 ------VSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVV 468
V+VEYLKDSN+LF GG+LVAIAVEHWNLHKRIALRVLLI+GVRPA LILGFM+V
Sbjct: 121 HVSTCQVAVEYLKDSNLLFFGGLLVAIAVEHWNLHKRIALRVLLIVGVRPAPLILGFMLV 180
Query: 469 TAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKL 648
TAFLSMWISNTAT+AMMVPIAHAVL+QLH +VEEG NP FELQEPSPQ+E TKL
Sbjct: 181 TAFLSMWISNTATSAMMVPIAHAVLDQLHSSQASSNVEEGSNNPTFELQEPSPQKEVTKL 240
Query: 649 DEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQG 828
DN Q LPV +A SE + +++ L TQ MSLCVCYSASIGGIATLTGT PNLVLQG
Sbjct: 241 ---DNGQALPVTSASSEGRAHLSQKHLHLTQCMSLCVCYSASIGGIATLTGTAPNLVLQG 297
Query: 829 QVNSIFPRN 855
Q+NS+FP+N
Sbjct: 298 QINSLFPQN 306
Score = 46.6 bits (109), Expect(3) = e-103
Identities = 23/49 (46%), Positives = 25/49 (51%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK 992
P +VVNFASWF FAFPTMV GFNFR+ G K
Sbjct: 304 PQNGNVVNFASWFSFAFPTMVILLLLAWLWLQILFLGFNFRKNFGIGEK 352
Score = 22.3 bits (46), Expect(3) = e-103
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 968 KNFGFGDQMKEKSE 1009
KNFG G++M+E+ +
Sbjct: 345 KNFGIGEKMQEQQQ 358
>ref|NP_001139448.1| solute carrier family 13 member 2 isoform c [Homo sapiens].
Length = 549
Score = 293 bits (749), Expect(3) = 6e-87
Identities = 157/260 (60%), Positives = 180/260 (69%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQ LWAYR Y +
Sbjct: 1 MATCWQALWAYRSYL------------------------------------------IVF 18
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
F+P++L P+ I+ SKV+VEYLKDSN+LF GG+LVAIAVEHWNLHKRIALRVLLI+GVR
Sbjct: 19 FVPILLLPLP-ILVPSKVAVEYLKDSNLLFFGGLLVAIAVEHWNLHKRIALRVLLIVGVR 77
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PA LILGFM+VTAFLSMWISNTAT+AMMVPIAHAVL+QLH +VEEG NP FELQ
Sbjct: 78 PAPLILGFMLVTAFLSMWISNTATSAMMVPIAHAVLDQLHSSQASSNVEEGSNNPTFELQ 137
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
EPSPQ+E TKL DN Q LPV +A SE + +++ L TQ MSLCVCYSASIGGIATL
Sbjct: 138 EPSPQKEVTKL---DNGQALPVTSASSEGRAHLSQKHLHLTQCMSLCVCYSASIGGIATL 194
Query: 796 TGTTPNLVLQGQVNSIFPRN 855
TGT PNLVLQGQ+NS+FP+N
Sbjct: 195 TGTAPNLVLQGQINSLFPQN 214
Score = 46.6 bits (109), Expect(3) = 6e-87
Identities = 23/49 (46%), Positives = 25/49 (51%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK 992
P +VVNFASWF FAFPTMV GFNFR+ G K
Sbjct: 212 PQNGNVVNFASWFSFAFPTMVILLLLAWLWLQILFLGFNFRKNFGIGEK 260
Score = 22.3 bits (46), Expect(3) = 6e-87
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 968 KNFGFGDQMKEKSE 1009
KNFG G++M+E+ +
Sbjct: 253 KNFGIGEKMQEQQQ 266
>ref|NP_808218.1| solute carrier family 13 member 5 isoform a [Homo sapiens].
Length = 568
Score = 231 bits (588), Expect(2) = 3e-65
Identities = 116/224 (51%), Positives = 155/224 (69%), Gaps = 3/224 (1%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY IILMA+ WCTE +PLAVT+ +PV+LFP+ I+D+ +V V+Y+KD+N+LF+GG++VA
Sbjct: 38 CAYVIILMAIYWCTEVIPLAVTSLMPVLLFPLFQILDSRQVCVQYMKDTNMLFLGGLIVA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
+AVE WNLHKRIALR LL +G +PA L+LGFM VTA LSMWISNTATTAMMVPI A+L+
Sbjct: 98 VAVERWNLHKRIALRTLLWVGAKPARLMLGFMGVTALLSMWISNTATTAMMVPIVEAILQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSESKT---QQN 717
Q+ + +L +K ++LP E T Q++
Sbjct: 158 QMEATSAATEA-------------------GLELVDKGKAKELPGSQVIFEGPTLGQQED 198
Query: 718 EEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+E+ R + M+LC+CY+ASIGG ATLTGT PN+VL GQ+N +FP
Sbjct: 199 QERKRLCKAMTLCICYAASIGGTATLTGTGPNVVLLGQMNELFP 242
Score = 37.0 bits (84), Expect(2) = 3e-65
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK*RR-RASGLRV 1022
P +VNFASWF FAFP M+ FNF+++ G + ++ + L+V
Sbjct: 242 PDSKDLVNFASWFAFAFPNMLVMLLFAWLWLQFVYMRFNFKKSWGCGLESKKNEKAALKV 301
Query: 1023 IR 1028
++
Sbjct: 302 LQ 303
>ref|NP_001137310.1| solute carrier family 13 member 5 isoform b [Homo sapiens].
Length = 522
Score = 231 bits (588), Expect(2) = 3e-65
Identities = 116/224 (51%), Positives = 155/224 (69%), Gaps = 3/224 (1%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY IILMA+ WCTE +PLAVT+ +PV+LFP+ I+D+ +V V+Y+KD+N+LF+GG++VA
Sbjct: 38 CAYVIILMAIYWCTEVIPLAVTSLMPVLLFPLFQILDSRQVCVQYMKDTNMLFLGGLIVA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
+AVE WNLHKRIALR LL +G +PA L+LGFM VTA LSMWISNTATTAMMVPI A+L+
Sbjct: 98 VAVERWNLHKRIALRTLLWVGAKPARLMLGFMGVTALLSMWISNTATTAMMVPIVEAILQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSESKT---QQN 717
Q+ + +L +K ++LP E T Q++
Sbjct: 158 QMEATSAATEA-------------------GLELVDKGKAKELPGSQVIFEGPTLGQQED 198
Query: 718 EEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+E+ R + M+LC+CY+ASIGG ATLTGT PN+VL GQ+N +FP
Sbjct: 199 QERKRLCKAMTLCICYAASIGGTATLTGTGPNVVLLGQMNELFP 242
Score = 37.0 bits (84), Expect(2) = 3e-65
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK*RR-RASGLRV 1022
P +VNFASWF FAFP M+ FNF+++ G + ++ + L+V
Sbjct: 242 PDSKDLVNFASWFAFAFPNMLVMLLFAWLWLQFVYMRFNFKKSWGCGLESKKNEKAALKV 301
Query: 1023 IR 1028
++
Sbjct: 302 LQ 303
>ref|NP_073740.2| solute carrier family 13 member 3 isoform a [Homo sapiens].
Length = 602
Score = 219 bits (559), Expect(2) = 2e-60
Identities = 115/272 (42%), Positives = 167/272 (61%), Gaps = 13/272 (4%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
+A + +W+ RR KE C + I+LMA+ WCTEALPL+VTA
Sbjct: 4 LAAAAKKVWSARRLLVLLFTPLALLPVVFALPPKEGRCLFVILLMAVYWCTEALPLSVTA 63
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
LP++LFP MGI+ ++KV +Y D+N LF+ G+++A A+E WNLH+RIAL++L+++GV+
Sbjct: 64 LLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLVGVQ 123
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PA LILG MV T+FLSMW+SNTA+TAMM+PIA+A+L+ L +E R +P+ E +
Sbjct: 124 PARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSLF------GQKEVRKDPSQESE 177
Query: 616 E-------------PSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLC 756
E P+ Q + KD+ + VP +++E + +G +
Sbjct: 178 ENTAAVRRNGLHTVPTEMQFLASTEAKDHPGETEVPLDLPADSRKEDEYRRNIWKGFLIS 237
Query: 757 VCYSASIGGIATLTGTTPNLVLQGQVNSIFPR 852
+ YSASIGG ATLTGT PNL+L GQ+ S FP+
Sbjct: 238 IPYSASIGGTATLTGTAPNLILLGQLKSFFPQ 269
Score = 32.3 bits (72), Expect(2) = 2e-60
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFR 968
P+ VVNF SWF FAFP M+ G +FR
Sbjct: 268 PQCDVVNFGSWFIFAFPLMLLFLLAGWLWISFLYGGLSFR 307
>ref|NP_001011554.1| solute carrier family 13 member 3 isoform b [Homo sapiens].
Length = 555
Score = 207 bits (527), Expect(2) = 9e-57
Identities = 106/228 (46%), Positives = 152/228 (66%), Gaps = 13/228 (5%)
Frame = +1
Query: 208 MALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWN 387
MA+ WCTEALPL+VTA LP++LFP MGI+ ++KV +Y D+N LF+ G+++A A+E WN
Sbjct: 1 MAVYWCTEALPLSVTALLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWN 60
Query: 388 LHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPV 567
LH+RIAL++L+++GV+PA LILG MV T+FLSMW+SNTA+TAMM+PIA+A+L+ L
Sbjct: 61 LHRRIALKILMLVGVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSLF---- 116
Query: 568 GKDVEEGRGNPAFELQE-------------PSPQQEETKLDEKDNKQDLPVPAAPSESKT 708
+E R +P+ E +E P+ Q + KD+ + VP
Sbjct: 117 --GQKEVRKDPSQESEENTAAVRRNGLHTVPTEMQFLASTEAKDHPGETEVPLDLPADSR 174
Query: 709 QQNEEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFPR 852
+++E + +G + + YSASIGG ATLTGT PNL+L GQ+ S FP+
Sbjct: 175 KEDEYRRNIWKGFLISIPYSASIGGTATLTGTAPNLILLGQLKSFFPQ 222
Score = 32.3 bits (72), Expect(2) = 9e-57
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFR 968
P+ VVNF SWF FAFP M+ G +FR
Sbjct: 221 PQCDVVNFGSWFIFAFPLMLLFLLAGWLWISFLYGGLSFR 260
>ref|NP_001180269.1| solute carrier family 13 member 3 isoform d [Homo sapiens].
Length = 520
Score = 207 bits (527), Expect(2) = 9e-57
Identities = 106/228 (46%), Positives = 152/228 (66%), Gaps = 13/228 (5%)
Frame = +1
Query: 208 MALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWN 387
MA+ WCTEALPL+VTA LP++LFP MGI+ ++KV +Y D+N LF+ G+++A A+E WN
Sbjct: 1 MAVYWCTEALPLSVTALLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWN 60
Query: 388 LHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPV 567
LH+RIAL++L+++GV+PA LILG MV T+FLSMW+SNTA+TAMM+PIA+A+L+ L
Sbjct: 61 LHRRIALKILMLVGVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSLF---- 116
Query: 568 GKDVEEGRGNPAFELQE-------------PSPQQEETKLDEKDNKQDLPVPAAPSESKT 708
+E R +P+ E +E P+ Q + KD+ + VP
Sbjct: 117 --GQKEVRKDPSQESEENTAAVRRNGLHTVPTEMQFLASTEAKDHPGETEVPLDLPADSR 174
Query: 709 QQNEEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFPR 852
+++E + +G + + YSASIGG ATLTGT PNL+L GQ+ S FP+
Sbjct: 175 KEDEYRRNIWKGFLISIPYSASIGGTATLTGTAPNLILLGQLKSFFPQ 222
Score = 32.3 bits (72), Expect(2) = 9e-57
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFR 968
P+ VVNF SWF FAFP M+ G +FR
Sbjct: 221 PQCDVVNFGSWFIFAFPLMLLFLLAGWLWISFLYGGLSFR 260
>ref|NP_071889.2| solute carrier family 13 member 1 [Homo sapiens].
Length = 595
Score = 187 bits (474), Expect(2) = 5e-50
Identities = 107/271 (39%), Positives = 153/271 (56%), Gaps = 23/271 (8%)
Frame = +1
Query: 106 YRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMM 285
YRR+ TKEA CAYT+ ++A W TEALPL+VTA LP ++ PM
Sbjct: 10 YRRFLFVVFTVLVLLPLPIVLHTKEAECAYTLFVVATFWLTEALPLSVTALLPSLMLPMF 69
Query: 286 GIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMV 465
GIM + KV+ Y KD ++L IG + +A ++E WNLHKRIAL++++++GV PA L LGFM
Sbjct: 70 GIMPSKKVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALKMVMMVGVNPAWLTLGFMS 129
Query: 466 VTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVE-------EGRGNPAFELQEPS 624
TAFLSMW+SNT+T AM++PIA AV++Q+ I +VE G N E+ E
Sbjct: 130 STAFLSMWLSNTSTAAMVMPIAEAVVQQI--INAEAEVEATQMTYFNGSTNHGLEIDESV 187
Query: 625 PQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGM----------------SLC 756
E + EK PVP +++ ++ +L GM LC
Sbjct: 188 NGHEINERKEKTK----PVPGYNNDTGKISSKVELEKNSGMRTKYRTKKGHVTRKLTCLC 243
Query: 757 VCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+ YS++IGG+ T+TGT+ NL+ N+ +P
Sbjct: 244 IAYSSTIGGLTTITGTSTNLIFAEYFNTRYP 274
Score = 30.0 bits (66), Expect(2) = 5e-50
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASG 986
P +NF SWF F+FP + GFNF+ G
Sbjct: 274 PDCRCLNFGSWFTFSFPAALIILLLSWIWLQWLFLGFNFKEMFKCG 319
>ref|NP_001180268.1| solute carrier family 13 member 3 isoform c [Homo sapiens].
Length = 552
Score = 174 bits (441), Expect = 1e-43
Identities = 85/181 (46%), Positives = 123/181 (67%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
+A + +W+ RR KE C + I+LMA+ WCTEALPL+VTA
Sbjct: 4 LAAAAKKVWSARRLLVLLFTPLALLPVVFALPPKEGRCLFVILLMAVYWCTEALPLSVTA 63
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
LP++LFP MGI+ ++KV +Y D+N LF+ G+++A A+E WNLH+RIAL++L+++GV+
Sbjct: 64 LLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLVGVQ 123
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PA LILG MV T+FLSMW+SNTA+TAMM+PIA+A+L+ L +E R +P+ E +
Sbjct: 124 PARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSLF------GQKEVRKDPSQESE 177
Query: 616 E 618
E
Sbjct: 178 E 178
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,228,244
Number of extensions: 1255323
Number of successful extensions: 7016
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6925
Number of HSP's successfully gapped: 26
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003806
(1029 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071856.1| solute carrier family 13 member 2 [Mus musculus]. 362 e-107
Alignment gi|NP_001004148.1| solute carrier family 13 member 5 [Mus muscu... 223 6e-63
Alignment gi|NP_473396.1| solute carrier family 13 member 3 [Mus musculus]. 216 5e-59
Alignment gi|NP_062354.2| solute carrier family 13 member 1 [Mus musculus]. 181 1e-48
Alignment gi|NP_766480.1| solute carrier family 13, member 4 [Mus musculu... 161 5e-43
>ref|NP_071856.1| solute carrier family 13 member 2 [Mus musculus].
Length = 586
Score = 362 bits (929), Expect(2) = e-107
Identities = 187/260 (71%), Positives = 209/260 (80%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQ LWAYR Y TKEAYCAY+IILMALLWCTEALPLAVTA
Sbjct: 1 MATCWQALWAYRSYLIVLCLPIFLLPLPLIVQTKEAYCAYSIILMALLWCTEALPLAVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
P+ILFP+MGIM+ASKV +EY KD+NILF+GG++VAIAVEHWNLHKRIAL VLLIIGVR
Sbjct: 61 LFPIILFPLMGIMEASKVCLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALGVLLIIGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALL+LGFM+VTAFLSMWISNTATTAMM+PI +AVLEQL KDVEEG NP+FELQ
Sbjct: 121 PALLLLGFMLVTAFLSMWISNTATTAMMLPIGYAVLEQLQGSQ--KDVEEGNSNPSFELQ 178
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
E SPQ+EETKL DN Q + V SE + Q+ +E RF+QG+SLC+CYSASIGGIATL
Sbjct: 179 EASPQKEETKL---DNGQAVSV---SSEPRAQKTKEHHRFSQGLSLCICYSASIGGIATL 232
Query: 796 TGTTPNLVLQGQVNSIFPRN 855
TGTTPNLVLQGQVNSIFP N
Sbjct: 233 TGTTPNLVLQGQVNSIFPEN 252
Score = 45.8 bits (107), Expect(2) = e-107
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGT-K*RRRASGLRV 1022
P +VVNFASWFGFAFPTMV G NFR+ G + R+ + +V
Sbjct: 250 PENSNVVNFASWFGFAFPTMVILLLLAWLWLQVLFLGVNFRKNFGFGEGEEERKQAAFQV 309
Query: 1023 IR 1028
I+
Sbjct: 310 IK 311
>ref|NP_001004148.1| solute carrier family 13 member 5 [Mus musculus].
Length = 572
Score = 223 bits (569), Expect(2) = 6e-63
Identities = 112/228 (49%), Positives = 156/228 (68%), Gaps = 3/228 (1%)
Frame = +1
Query: 175 KEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGG 354
K A CAY I++MA+ WCT+ +P+AVT+ LPV+LFP++ ++D+ +V ++Y+KD+N+LF+G
Sbjct: 34 KFARCAYVIVIMAVYWCTDVIPVAVTSLLPVLLFPLLKVLDSKQVCIQYMKDTNMLFLGS 93
Query: 355 MLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAH 534
++VA+AVE W LHKR+ALR+LL +G +P+ L+LGFM VTAFLSMWISNTA TAMM+PI
Sbjct: 94 LIVAVAVERWKLHKRVALRMLLFVGTKPSRLMLGFMFVTAFLSMWISNTAATAMMIPIVE 153
Query: 535 AVLEQLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSES---K 705
A+L+Q+ I VE G +L +K+ +LP E +
Sbjct: 154 AMLQQM--IAANTAVEASLGT--------------LELLDKNKTSELPGSQVVFEDPNVQ 197
Query: 706 TQQNEEQLRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
Q++EE + M LCVCYSASIGG ATLTGT PN+VL GQ+ +FP
Sbjct: 198 EQEDEETKNMYKAMHLCVCYSASIGGTATLTGTGPNVVLLGQMQELFP 245
Score = 36.6 bits (83), Expect(2) = 6e-63
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +3
Query: 825 GPSQLDLPPKPHVVNFASWFGFAFPTMV 908
G Q P V+N+ASWFGFAFP MV
Sbjct: 238 GQMQELFPDSKDVLNYASWFGFAFPNMV 265
>ref|NP_473396.1| solute carrier family 13 member 3 [Mus musculus].
Length = 600
Score = 216 bits (549), Expect(2) = 5e-59
Identities = 118/266 (44%), Positives = 164/266 (61%), Gaps = 7/266 (2%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
+A + +W+ RR KE C Y I+LMA+ WCTEALPL+VTA
Sbjct: 4 LAALAKKVWSARRLLVLLLVPLALLPILFALPPKEGRCLYVILLMAVYWCTEALPLSVTA 63
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
LP+ILFP MGI+ +SKV +Y D+N LF+ G+++A A+E WNLH+RIAL+VL+++GV+
Sbjct: 64 LLPIILFPFMGILPSSKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKVLMLVGVQ 123
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLH-KIPVGKDVEEGRGNPAFEL 612
PA LILG MV T+FLSMW+SNTA+TAMM+PIA A+L+ L + KD+ +
Sbjct: 124 PARLILGMMVTTSFLSMWLSNTASTAMMLPIASAILKSLFGQREARKDLPREGDESTAAV 183
Query: 613 QEPSPQQEETKL-----DEKDNKQDLPVP-AAPSESKTQQNEEQLRFTQGMSLCVCYSAS 774
Q + T++ E + +D P P +SK + E + +G + + YSAS
Sbjct: 184 QGNGLRTVPTEMQFLASSEGGHTEDAEAPMELPDDSK--EEEHRRNIWKGFLISIPYSAS 241
Query: 775 IGGIATLTGTTPNLVLQGQVNSIFPR 852
IGG ATLTGT PNL+L GQ+ S FP+
Sbjct: 242 IGGTATLTGTAPNLILLGQLKSFFPQ 267
Score = 31.2 bits (69), Expect(2) = 5e-59
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMV 908
P+ VVNF SWF FAFP M+
Sbjct: 266 PQCDVVNFGSWFIFAFPLML 285
>ref|NP_062354.2| solute carrier family 13 member 1 [Mus musculus].
Length = 594
Score = 181 bits (460), Expect(2) = 1e-48
Identities = 103/270 (38%), Positives = 151/270 (55%), Gaps = 22/270 (8%)
Frame = +1
Query: 106 YRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMM 285
YRR+ TKEA CAY + ++A+ W TEALPL++TA LP ++FPM
Sbjct: 10 YRRFLLVVFTILVFLPLPLIIRTKEAQCAYILFVIAIFWITEALPLSITALLPGLMFPMF 69
Query: 286 GIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMV 465
GIM +S+V+ Y KD ++L IG + +A ++E WNLHKRIALR+++++GV PA L LGFM
Sbjct: 70 GIMRSSQVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMVGVNPAWLTLGFMS 129
Query: 466 VTAFLSMWISNTATTAMMVPIAHAVLEQL--------------------HKIPVGKDVEE 585
TAFLSMW+SNT+T AM++PI AV +Q+ H + + + V
Sbjct: 130 STAFLSMWLSNTSTAAMVMPIVEAVAQQIISAEAEAEATQMTYFNESAAHGLDIDETVIG 189
Query: 586 GRGNPAFELQEPSP--QQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCV 759
N E +P+P ++ K+ K + V A S+ +L M L V
Sbjct: 190 QETNEKKEKTKPAPGSSHDKGKVSRKMETEKNAVTGAKYRSRKDHMMCKL-----MCLSV 244
Query: 760 CYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
YS++IGG+ T+TGT+ NL+ N+ +P
Sbjct: 245 AYSSTIGGLTTITGTSTNLIFSEHFNTRYP 274
Score = 30.4 bits (67), Expect(2) = 1e-48
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK*RRRASGLRVIR 1028
P +NF SWF F+FP + GF+F+ TK + + +VI+
Sbjct: 274 PDCRCLNFGSWFLFSFPVALILLLLSWIWLQWLYLGFDFKMFKCGKTKTLKEKACAKVIK 333
>ref|NP_766480.1| solute carrier family 13, member 4 [Mus musculus].
Length = 625
Score = 161 bits (408), Expect(2) = 5e-43
Identities = 95/270 (35%), Positives = 149/270 (55%), Gaps = 44/270 (16%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
T EA CAY +++ A+ W +EA+PL A +P L+P G++ +S+V+ EY K++ +L +G
Sbjct: 32 TSEAACAYVLLVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSSEVAAEYFKNTTLLLVG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ VA AVE WNLHKRIALR++L+ G +P +L+L FM T LSMW+SNT+TTAM++PI
Sbjct: 92 VICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTMLSMWLSNTSTTAMVMPIV 151
Query: 532 HAVLEQL-----HKIPVGKDVEEGRG------NPAFEL---QEPSPQQEETKLDEKDNKQ 669
AVL++L ++ G + E G + EL E + + T L + N
Sbjct: 152 EAVLQELINAEEEQLAAGTEEAELMGLDVNNRQTSMELIFVNEDTSAADFTSLMQSKNLN 211
Query: 670 DLPV----------------------PAAPS-ESKTQQ-NEEQLRFTQGMSLCVC----- 762
+P+ P P+ SKTQ+ N+++ R +C C
Sbjct: 212 GVPMVTKSINTANQQQQKKQQPSQEKPGVPTPSSKTQELNKKKYRSHHDQMICKCLSLSI 271
Query: 763 -YSASIGGIATLTGTTPNLVLQGQVNSIFP 849
Y+A+IGG+ T+ GT+ +L+ N+ +P
Sbjct: 272 SYAATIGGLTTIIGTSTSLIFLEHFNNQYP 301
Score = 32.0 bits (71), Expect(2) = 5e-43
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK*RRRASGL 1016
P VVNF +WF F+FP + G NF+ T + K + R L
Sbjct: 301 PAAEVVNFGTWFLFSFPISLIMLVVSWFWIHWLFLGCNFKETCSLSKKKKTRREEL 356
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,607,490
Number of extensions: 1037577
Number of successful extensions: 5469
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5355
Number of HSP's successfully gapped: 10
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003806
(1029 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131811.1| PREDICTED: solute carrier family 13 member 2... 481 e-144
Alignment gi|XP_003131812.1| PREDICTED: solute carrier family 13 member 2... 389 e-116
Alignment gi|XP_003131922.1| PREDICTED: solute carrier family 13 member 5... 229 2e-60
Alignment gi|XP_003131921.1| PREDICTED: solute carrier family 13 member 5... 229 2e-60
Alignment gi|XP_003134796.1| PREDICTED: solute carrier family 13 member 1... 177 8e-48
Alignment gi|XP_003134691.1| PREDICTED: solute carrier family 13 member 4... 155 7e-41
Alignment gi|XP_003360179.1| PREDICTED: solute carrier family 13 member 4... 155 8e-41
Alignment gi|XP_001926866.3| PREDICTED: solute carrier family 13 member 3... 58 1e-10
>ref|XP_003131811.1| PREDICTED: solute carrier family 13 member 2-like isoform 1 [Sus
scrofa].
Length = 594
Score = 481 bits (1239), Expect(2) = e-144
Identities = 243/261 (93%), Positives = 243/261 (93%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQGLWAYRRY TKEAYCAYTIILMALLWCTEALPLAVTA
Sbjct: 1 MATCWQGLWAYRRYLIVFFLPIFLLPLPILVPTKEAYCAYTIILMALLWCTEALPLAVTA 60
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR
Sbjct: 61 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 120
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ
Sbjct: 121 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 180
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL
Sbjct: 181 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 240
Query: 796 TGTTPNLVLQGQVNSIFPRNP 858
TGTTPNLVLQGQVNSIFPRNP
Sbjct: 241 TGTTPNLVLQGQVNSIFPRNP 261
Score = 48.1 bits (113), Expect(2) = e-144
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK*R-RRASGLRV 1022
P P+VVNFASWFGFAFPTMV GFNF + G + + + + V
Sbjct: 258 PRNPNVVNFASWFGFAFPTMVILLLLSWLWLQILFLGFNFPKNFGFGDQMKEKERAAFEV 317
Query: 1023 IR 1028
IR
Sbjct: 318 IR 319
>ref|XP_003131812.1| PREDICTED: solute carrier family 13 member 2-like isoform 2 [Sus
scrofa].
Length = 551
Score = 389 bits (999), Expect(2) = e-116
Identities = 205/261 (78%), Positives = 210/261 (80%)
Frame = +1
Query: 76 MATCWQGLWAYRRYXXXXXXXXXXXXXXXXXXTKEAYCAYTIILMALLWCTEALPLAVTA 255
MATCWQGLWAYRRY +
Sbjct: 1 MATCWQGLWAYRRYL------------------------------------------IVF 18
Query: 256 FLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 435
FLP+ L P+ I+ +KVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR
Sbjct: 19 FLPIFLLPLP-ILVPTKVSVEYLKDSNILFIGGMLVAIAVEHWNLHKRIALRVLLIIGVR 77
Query: 436 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 615
PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ
Sbjct: 78 PALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLEQLHKIPVGKDVEEGRGNPAFELQ 137
Query: 616 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 795
EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL
Sbjct: 138 EPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQLRFTQGMSLCVCYSASIGGIATL 197
Query: 796 TGTTPNLVLQGQVNSIFPRNP 858
TGTTPNLVLQGQVNSIFPRNP
Sbjct: 198 TGTTPNLVLQGQVNSIFPRNP 218
Score = 48.1 bits (113), Expect(2) = e-116
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 846 PPKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK*R-RRASGLRV 1022
P P+VVNFASWFGFAFPTMV GFNF + G + + + + V
Sbjct: 215 PRNPNVVNFASWFGFAFPTMVILLLLSWLWLQILFLGFNFPKNFGFGDQMKEKERAAFEV 274
Query: 1023 IR 1028
IR
Sbjct: 275 IR 276
>ref|XP_003131922.1| PREDICTED: solute carrier family 13 member 5 isoform 2 [Sus
scrofa].
Length = 523
Score = 229 bits (584), Expect = 2e-60
Identities = 118/221 (53%), Positives = 153/221 (69%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY I +MA+ WCTE +PLAVTA +P +LFP+ IMD+ +V ++Y+KD+N+LF+GG++VA
Sbjct: 38 CAYVITVMAVYWCTEVIPLAVTALMPALLFPLFKIMDSKQVCLQYMKDTNMLFLGGLIVA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
+AVEHWNLHKRIALR LL +G +PA L+LGFM VTAFLSMWISNTATTAMMVPI AVL+
Sbjct: 98 VAVEHWNLHKRIALRTLLWVGAKPAQLMLGFMGVTAFLSMWISNTATTAMMVPIVEAVLQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQ 726
Q+ + G A EL + E N+ + PA + Q+ E+
Sbjct: 158 QMEATSTATEASLG----ALELADKGKAGE-----LPGNQANFEGPA----MRKQEVHER 204
Query: 727 LRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+ M+LCVCY+ASIGG ATLTGT PN+VL GQ+ +FP
Sbjct: 205 KNVCKAMTLCVCYAASIGGTATLTGTGPNVVLLGQMQELFP 245
>ref|XP_003131921.1| PREDICTED: solute carrier family 13 member 5 isoform 1 [Sus
scrofa].
Length = 569
Score = 229 bits (584), Expect = 2e-60
Identities = 118/221 (53%), Positives = 153/221 (69%)
Frame = +1
Query: 187 CAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGMLVA 366
CAY I +MA+ WCTE +PLAVTA +P +LFP+ IMD+ +V ++Y+KD+N+LF+GG++VA
Sbjct: 38 CAYVITVMAVYWCTEVIPLAVTALMPALLFPLFKIMDSKQVCLQYMKDTNMLFLGGLIVA 97
Query: 367 IAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHAVLE 546
+AVEHWNLHKRIALR LL +G +PA L+LGFM VTAFLSMWISNTATTAMMVPI AVL+
Sbjct: 98 VAVEHWNLHKRIALRTLLWVGAKPAQLMLGFMGVTAFLSMWISNTATTAMMVPIVEAVLQ 157
Query: 547 QLHKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAPSESKTQQNEEQ 726
Q+ + G A EL + E N+ + PA + Q+ E+
Sbjct: 158 QMEATSTATEASLG----ALELADKGKAGE-----LPGNQANFEGPA----MRKQEVHER 204
Query: 727 LRFTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+ M+LCVCY+ASIGG ATLTGT PN+VL GQ+ +FP
Sbjct: 205 KNVCKAMTLCVCYAASIGGTATLTGTGPNVVLLGQMQELFP 245
>ref|XP_003134796.1| PREDICTED: solute carrier family 13 member 1 [Sus scrofa].
Length = 592
Score = 177 bits (450), Expect(2) = 8e-48
Identities = 101/248 (40%), Positives = 143/248 (57%), Gaps = 23/248 (9%)
Frame = +1
Query: 175 KEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGG 354
+EA CAYT+ ++A+ W TEALPL+VTA LP ++FP+ GIM + +V+ Y KD ++L IG
Sbjct: 30 QEAECAYTLFVVAMFWLTEALPLSVTALLPGLMFPLFGIMPSKEVASAYFKDFHLLLIGV 89
Query: 355 MLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAH 534
+ +A ++E WNLHKRIALR+++ +GV PA L LGFM TAFLSMW+SNT+T AM++PI
Sbjct: 90 ICLATSIEKWNLHKRIALRMVMTVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVE 149
Query: 535 AVLEQLHKIPVGKDVE-------EGRGNPAFELQEPSPQQEETKLDEKDNKQDLPVPAAP 693
AV +Q+ I +VE G N E E E + EK PV
Sbjct: 150 AVAQQI--INAEAEVEATQMTYFSGSTNLGLETDESVNGHETNERKEKTK----PVAGYR 203
Query: 694 SESKTQQNEEQLRFTQG----------------MSLCVCYSASIGGIATLTGTTPNLVLQ 825
+E+ + +L G M LC+ YS++IGG+ T+TGT+ NL+
Sbjct: 204 NEAGKISGKMELEKNSGTGNKYRTKKDHMMCKLMCLCIAYSSTIGGLTTITGTSTNLIFA 263
Query: 826 GQVNSIFP 849
N +P
Sbjct: 264 EHFNMRYP 271
Score = 31.2 bits (69), Expect(2) = 8e-48
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFR 968
P H +NF SWF +FP + GFNF+
Sbjct: 271 PDCHCINFGSWFIMSFPAAIIILLLSWIWLQWLFLGFNFK 310
>ref|XP_003134691.1| PREDICTED: solute carrier family 13 member 4 [Sus scrofa].
Length = 626
Score = 155 bits (393), Expect(2) = 7e-41
Identities = 89/271 (32%), Positives = 142/271 (52%), Gaps = 45/271 (16%)
Frame = +1
Query: 172 TKEAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIG 351
+ EA CAY +I+ A+ W +EA+PL A +P L+P G++ +++V+ EY K++ +L +G
Sbjct: 32 SSEAACAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSNEVAAEYFKNTTMLLVG 91
Query: 352 GMLVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIA 531
+ VA AVE WNLHKRIALR++L+ G +P +L+L FM T LSMW+SNT+TTAM++PI
Sbjct: 92 VICVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTMLSMWLSNTSTTAMVMPIV 151
Query: 532 HAVLEQL-----HKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLP------ 678
AVL++L ++ G E + + P E ++E + D
Sbjct: 152 EAVLQELVSAEEEQLVAGNASAEEAELISLKANNSQPSLELIFVNEDTSNADFSSLMMNK 211
Query: 679 ----VPAAPSESKTQQNEEQLR------------------------------FTQGMSLC 756
VP S KT +++Q R + +SL
Sbjct: 212 NLNGVPTVTSPVKTANHQDQKRHPPQEKPPVPTPRPRNQELKKKYKSQHDQMICKCLSLS 271
Query: 757 VCYSASIGGIATLTGTTPNLVLQGQVNSIFP 849
+ Y+A+IGG+ T+ GT+ +L+ N+ +P
Sbjct: 272 ISYAATIGGLTTIIGTSTSLIFLEHFNNQYP 302
Score = 30.0 bits (66), Expect(2) = 7e-41
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK 992
P VVNF +WF F+FP + G NF+ T + K
Sbjct: 302 PGADVVNFGTWFLFSFPISLIMLVVSWFWMHWLFLGCNFKETCSLSKK 349
>ref|XP_003360179.1| PREDICTED: solute carrier family 13 member 4-like [Sus scrofa].
Length = 678
Score = 155 bits (392), Expect(2) = 8e-41
Identities = 89/269 (33%), Positives = 141/269 (52%), Gaps = 45/269 (16%)
Frame = +1
Query: 178 EAYCAYTIILMALLWCTEALPLAVTAFLPVILFPMMGIMDASKVSVEYLKDSNILFIGGM 357
EA CAY +I+ A+ W +EA+PL A +P L+P G++ +++V+ EY K++ +L +G +
Sbjct: 86 EAACAYVLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSNEVAAEYFKNTTMLLVGVI 145
Query: 358 LVAIAVEHWNLHKRIALRVLLIIGVRPALLILGFMVVTAFLSMWISNTATTAMMVPIAHA 537
VA AVE WNLHKRIALR++L+ G +P +L+L FM T LSMW+SNT+TTAM++PI A
Sbjct: 146 CVAAAVEKWNLHKRIALRMVLMAGAKPGMLLLCFMCCTTMLSMWLSNTSTTAMVMPIVEA 205
Query: 538 VLEQL-----HKIPVGKDVEEGRGNPAFELQEPSPQQEETKLDEKDNKQDLP-------- 678
VL++L ++ G E + + P E ++E + D
Sbjct: 206 VLQELVSAEEEQLVAGNASAEEAELISLKANNSQPSLELIFVNEDTSNADFSSLMMNKNL 265
Query: 679 --VPAAPSESKTQQNEEQLR------------------------------FTQGMSLCVC 762
VP S KT +++Q R + +SL +
Sbjct: 266 NGVPTVTSPVKTANHQDQKRHPPQEKPPVPTPRPRNQELKKKYKSQHDQMICKCLSLSIS 325
Query: 763 YSASIGGIATLTGTTPNLVLQGQVNSIFP 849
Y+A+IGG+ T+ GT+ +L+ N+ +P
Sbjct: 326 YAATIGGLTTIIGTSTSLIFLEHFNNQYP 354
Score = 30.0 bits (66), Expect(2) = 8e-41
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMVXXXXXXXXXXXXXXXGFNFRRTSASGTK 992
P VVNF +WF F+FP + G NF+ T + K
Sbjct: 354 PGADVVNFGTWFLFSFPISLIMLVVSWFWMHWLFLGCNFKETCSLSKK 401
>ref|XP_001926866.3| PREDICTED: solute carrier family 13 member 3-like [Sus scrofa].
Length = 330
Score = 52.8 bits (125), Expect(2) = 1e-10
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +1
Query: 697 ESKTQQNEEQLR-FTQGMSLCVCYSASIGGIATLTGTTPNLVLQGQVNSIFPR 852
++ +++ EE R +G + + YSASIGG ATLTGT PNL+L GQ+ S FP+
Sbjct: 4 QANSRKEEEYRRNIWKGFLISIPYSASIGGTATLTGTAPNLILLGQLKSFFPQ 56
Score = 31.2 bits (69), Expect(2) = 1e-10
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 849 PKPHVVNFASWFGFAFPTMV 908
P+ VVNF SWF FAFP M+
Sbjct: 55 PQCDVVNFGSWFIFAFPLML 74
Score = 57.8 bits (138), Expect = 1e-08
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 8/70 (11%)
Frame = +1
Query: 367 IAVEHWNLHKRIALRVLLIIG--------VRPALLILGFMVVTAFLSMWISNTATTAMMV 522
+A+ W+ +R L + G V+ LILG MV T+FLSMW+SNTA+TAMM+
Sbjct: 213 VALTTWSRSFPFPVRALTMSGYSGLPEVTVQGRGLILGMMVTTSFLSMWLSNTASTAMML 272
Query: 523 PIAHAVLEQL 552
PIA+A+L+ L
Sbjct: 273 PIANAILKSL 282
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,756,483
Number of extensions: 810145
Number of successful extensions: 4487
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4430
Number of HSP's successfully gapped: 17
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003806
(1029 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 426 e-116
Sscrofa_Chr12 426 e-116
Sscrofa_Chr17 66 4e-08
>Sscrofa_Chr18
|| Length = 61220071
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Plus
Query: 444 gctgatcctaggcttcatggtggtcacggccttcctgtccatgtggatcagcaacacggc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102419 gctgatcctaggcttcatggtggtcacggccttcctgtccatgtggatcagcaacacggc 102478
Query: 504 caccactgccatgatggtgcccatcgcccacgccgttctggagcagctgcacaagatacc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102479 caccactgccatgatggtgcccatcgcccacgccgttctggagcagctgcacaagatacc 102538
Query: 564 ggtgggcaaggatgtggaggagggcaggggcaaccccgcctttgaactccaggaaccgag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102539 ggtgggcaaggatgtggaggagggcaggggcaaccccgcctttgaactccaggaaccgag 102598
Query: 624 tccccagcaggaagagaccaagcttgatgagaaag 658
|||||||||||||||||||||||||||||||||||
Sbjct: 102599 tccccagcaggaagagaccaagcttgatgagaaag 102633
Score = 341 bits (172), Expect = 5e-91
Identities = 181/184 (98%)
Strand = Plus / Plus
Query: 657 agacaacaagcaggatctccctgtcccagctgccccttcggagtccaagacacaacagaa 716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103429 agacaacaagcaggacctccctgtcccagctgccccttcggagtccaagacacaacagaa 103488
Query: 717 tgaggagcagctccgctttacccagggcatgagcctgtgtgtgtgctactcggccagcat 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103489 cgaggagcagctccgctttacccagggcatgagcctgtgtgtgtgctactcggccagcat 103548
Query: 777 cgggggcatcgccaccctgacgggcaccacacccaacctggtgctgcagggccaagtcaa 836
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 103549 cgggggcatcgccaccctgacgggcaccacacctaacctggtgctgcagggccaagtcaa 103608
Query: 837 ctcg 840
||||
Sbjct: 103609 ctcg 103612
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 8 gctacaccgttggtcctgctggtgcctggatccggagggtgaccaggcagccctcgtggg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88690 gctacaccgttggtcctgctggtgcctggatccggagggtgaccaggcagccctcgtggg 88749
Query: 68 tccacaccatggccacctgctggcagggcctgtgggcctatcgcaggtacctgattgtct 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88750 tccacaccatggccacctgctggcagggcctgtgggcctatcgcaggtacctgattgtct 88809
Query: 128 tcttcctacccattttcctgctgcctctgcccatcctcgtcccgactaagg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88810 tcttcctacccattttcctgctgcctctgcccatcctcgtcccgactaagg 88860
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 305 aggtcagcgttgagtacctcaaggactccaacatcctattcatcggggggatgctggtgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102156 aggtcagcgttgagtacctcaaggactccaacatcctattcatcggggggatgctggtgg 102215
Query: 365 ccatcgccgtggagcactggaatctgcacaaacgcatcgccctccgcgtgctcctcatca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102216 ccatcgccgtggagcactggaatctgcacaaacgcatcgccctccgcgtgctcctcatca 102275
Query: 425 tcggcgtgcggcccgccctg 444
||||||||||||||||||||
Sbjct: 102276 tcggcgtgcggcccgccctg 102295
Score = 256 bits (129), Expect = 2e-65
Identities = 132/133 (99%)
Strand = Plus / Plus
Query: 176 aggaagcctactgcgcctacaccatcatcctcatggcgctcctctggtgcacggaggctc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100842 aggaagcctactgcgcctacaccatcatcctcatggcgctcctctggtgcacggaggctc 100901
Query: 236 tgcccctggccgtcaccgccttcctccctgtcatcctgttccccatgatgggcatcatgg 295
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 100902 tgcccctggccgtcaccgccttcctccccgtcatcctgttccccatgatgggcatcatgg 100961
Query: 296 atgcctccaaggt 308
|||||||||||||
Sbjct: 100962 atgcctccaaggt 100974
Score = 228 bits (115), Expect = 5e-57
Identities = 122/123 (99%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 840 gatcttcccccgaaacccca-tgtggtgaacttcgcctcctggtttggctttgccttccc 898
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 103717 gatcttcccccgaaaccccaatgtggtgaacttcgcctcctggtttggctttgccttccc 103776
Query: 899 caccatggtcatcttgctgctactttcctggctgtggctgcagatcctcttcttagggtt 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103777 caccatggtcatcttgctgctactttcctggctgtggctgcagatcctcttcttagggtt 103836
Query: 959 caa 961
|||
Sbjct: 103837 caa 103839
Score = 93.7 bits (47), Expect = 2e-16
Identities = 64/67 (95%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 965 ccgaagaacttcggcttcggggaccaaatgaaggag-aagagcgagcggccttcga-gtc 1022
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct: 105783 ccgaagaacttcggcttcggggaccagatgaaggagaaagagcgagcggccttcgaggtc 105842
Query: 1023 atccgga 1029
|||||||
Sbjct: 105843 atccgga 105849
>Sscrofa_Chr12
|| Length = 63588571
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 444 gctgatcctaggcttcatggtggtcacggccttcctgtccatgtggatcagcaacacggc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46624456 gctgatcctaggcttcatggtggtcacggccttcctgtccatgtggatcagcaacacggc 46624397
Query: 504 caccactgccatgatggtgcccatcgcccacgccgttctggagcagctgcacaagatacc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46624396 caccactgccatgatggtgcccatcgcccacgccgttctggagcagctgcacaagatacc 46624337
Query: 564 ggtgggcaaggatgtggaggagggcaggggcaaccccgcctttgaactccaggaaccgag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46624336 ggtgggcaaggatgtggaggagggcaggggcaaccccgcctttgaactccaggaaccgag 46624277
Query: 624 tccccagcaggaagagaccaagcttgatgagaaag 658
|||||||||||||||||||||||||||||||||||
Sbjct: 46624276 tccccagcaggaagagaccaagcttgatgagaaag 46624242
Score = 365 bits (184), Expect = 3e-98
Identities = 184/184 (100%)
Strand = Plus / Minus
Query: 657 agacaacaagcaggatctccctgtcccagctgccccttcggagtccaagacacaacagaa 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46623446 agacaacaagcaggatctccctgtcccagctgccccttcggagtccaagacacaacagaa 46623387
Query: 717 tgaggagcagctccgctttacccagggcatgagcctgtgtgtgtgctactcggccagcat 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46623386 tgaggagcagctccgctttacccagggcatgagcctgtgtgtgtgctactcggccagcat 46623327
Query: 777 cgggggcatcgccaccctgacgggcaccacacccaacctggtgctgcagggccaagtcaa 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46623326 cgggggcatcgccaccctgacgggcaccacacccaacctggtgctgcagggccaagtcaa 46623267
Query: 837 ctcg 840
||||
Sbjct: 46623266 ctcg 46623263
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 305 aggtcagcgttgagtacctcaaggactccaacatcctattcatcggggggatgctggtgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46624719 aggtcagcgttgagtacctcaaggactccaacatcctattcatcggggggatgctggtgg 46624660
Query: 365 ccatcgccgtggagcactggaatctgcacaaacgcatcgccctccgcgtgctcctcatca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46624659 ccatcgccgtggagcactggaatctgcacaaacgcatcgccctccgcgtgctcctcatca 46624600
Query: 425 tcggcgtgcggcccgccctg 444
||||||||||||||||||||
Sbjct: 46624599 tcggcgtgcggcccgccctg 46624580
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 176 aggaagcctactgcgcctacaccatcatcctcatggcgctcctctggtgcacggaggctc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46626085 aggaagcctactgcgcctacaccatcatcctcatggcgctcctctggtgcacggaggctc 46626026
Query: 236 tgcccctggccgtcaccgccttcctccctgtcatcctgttccccatgatgggcatcatgg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46626025 tgcccctggccgtcaccgccttcctccctgtcatcctgttccccatgatgggcatcatgg 46625966
Query: 296 atgcctccaaggt 308
|||||||||||||
Sbjct: 46625965 atgcctccaaggt 46625953
Score = 163 bits (82), Expect = 2e-37
Identities = 96/98 (97%), Gaps = 2/98 (2%)
Strand = Plus / Minus
Query: 864 gtgaacttcgcctcctggtttggctttgccttccccaccatggtcatcttgctgctactt 923
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 46623136 gtgaacttcgc-tcctggtttggctttgccttccccac-atggtcatcttgctgctactt 46623079
Query: 924 tcctggctgtggctgcagatcctcttcttagggttcaa 961
||||||||||||||||||||||||||||||||||||||
Sbjct: 46623078 tcctggctgtggctgcagatcctcttcttagggttcaa 46623041
Score = 103 bits (52), Expect = 2e-19
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 444 gctgatcctaggcttcatggtggtcacggccttcctgtccatgtggatcagcaacacggc 503
|||||| || ||||| |||| ||||||||||| || |||||||||||||||||||||||
Sbjct: 52687956 gctgatgctgggctttatgggcgtcacggcctttctctccatgtggatcagcaacacggc 52688015
Query: 504 caccactgccatgatggtgcccat 527
|||||| |||||||||||||||||
Sbjct: 52688016 caccacggccatgatggtgcccat 52688039
Score = 93.7 bits (47), Expect = 2e-16
Identities = 64/67 (95%), Gaps = 2/67 (2%)
Strand = Plus / Minus
Query: 965 ccgaagaacttcggcttcggggaccaaatgaaggag-aagagcgagcggccttcga-gtc 1022
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct: 46621762 ccgaagaacttcggcttcggggaccagatgaaggagaaagagcgagcggccttcgaggtc 46621703
Query: 1023 atccgga 1029
|||||||
Sbjct: 46621702 atccgga 46621696
Score = 75.8 bits (38), Expect = 4e-11
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 864 gtgaacttcgcctcctggtttggctttgccttccccaccatggtcatcttgctgctactt 923
|||||||||||||| |||||||| ||||||||||| | |||| | ||| ||||||| ||
Sbjct: 52690867 gtgaacttcgcctcttggtttggatttgccttccctaacatgctgatcatgctgctgctc 52690926
Query: 924 tcctggctgtggct 937
||||||||||||||
Sbjct: 52690927 tcctggctgtggct 52690940
>Sscrofa_Chr17
|| Length = 69701581
Score = 65.9 bits (33), Expect = 4e-08
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 473 ccttcctgtccatgtggatcagcaacacggccaccactgccatgatggtgcccatcgccc 532
|||| |||||||||||| | |||||||| ||| |||| ||||||||| |||||||||||
Sbjct: 54670812 cctttctgtccatgtggctgagcaacaccgcctccaccgccatgatgctgcccatcgcca 54670871
Query: 533 acgcc 537
|||||
Sbjct: 54670872 acgcc 54670876
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 762 ctactcggccagcatcgggggcatcgccaccctgacgggcac 803
||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 54517483 ctactcggccagcatcgggggcactgccaccctcacgggcac 54517442
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 762 ctactcggccagcatcgggggcatcgccaccctgacgggcac 803
||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 54589762 ctactcggccagcatcgggggcactgccaccctcacgggcac 54589721
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,419,251
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 18
Length of query: 1029
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1008
Effective length of database: 2,808,413,156
Effective search space: 2830880461248
Effective search space used: 2830880461248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)