Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003814
(996 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069448.1| transmembrane 4 L6 family member 1 [Bos taur... 395 e-110
Alignment gi|NP_001029478.1| transmembrane 4 L6 family member 4 [Bos taur... 210 1e-54
Alignment gi|NP_001171653.1| transmembrane 4 L6 family member 18 [Bos tau... 189 2e-48
Alignment gi|NP_001029459.1| transmembrane 4 L6 family member 18 [Bos tau... 189 2e-48
Alignment gi|NP_001039567.1| transmembrane 4 L6 family member 5 [Bos taur... 184 1e-46
Alignment gi|NP_001070449.1| transmembrane 4 L6 family member 20 [Bos tau... 58 1e-08
>ref|NP_001069448.1| transmembrane 4 L6 family member 1 [Bos taurus].
Length = 202
Score = 395 bits (1014), Expect = e-110
Identities = 179/202 (88%), Positives = 191/202 (94%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MCYG+CARCIGHSL WLA LCIVANILLYFPNGETKYAS+NHLSRFVWFFSGI GGGLL+
Sbjct: 1 MCYGRCARCIGHSLVWLATLCIVANILLYFPNGETKYASDNHLSRFVWFFSGILGGGLLM 60
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
FLPAF+FIGL+QEDCCGCCGHENCGKRCAMLSS+LAALIGI GSGYCV VAAL L EGP
Sbjct: 61 FLPAFIFIGLDQEDCCGCCGHENCGKRCAMLSSILAALIGIGGSGYCVTVAALALEEGPR 120
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C+DASGQWNYTFA+TEG YL+D STWSQC+EPKHIVEWNVSLFSILLALGGIEFILCLIQ
Sbjct: 121 CMDASGQWNYTFANTEGDYLLDSSTWSQCVEPKHIVEWNVSLFSILLALGGIEFILCLIQ 180
Query: 649 VINGVLGGICGYCCSRQQQYDC 714
VING+LGGICG+C SRQQQYDC
Sbjct: 181 VINGMLGGICGHCSSRQQQYDC 202
>ref|NP_001029478.1| transmembrane 4 L6 family member 4 [Bos taurus].
Length = 203
Score = 210 bits (535), Expect = 1e-54
Identities = 96/194 (49%), Positives = 136/194 (70%), Gaps = 1/194 (0%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC G CA+C+G +L L+V ++ANILL+FP G+ + +HLS VW+F GI G G+L+
Sbjct: 1 MCTGSCAKCLGGTLIPLSVFGLLANILLFFPGGKV-IDNNDHLSDEVWYFGGILGSGVLM 59
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
PA VF+GL+ DCCGCCG+E CGKR AM +S + A+IG+ G+GY IV+A+ + +GP
Sbjct: 60 IFPALVFLGLKNNDCCGCCGNEGCGKRFAMFTSTIFAVIGVLGAGYSFIVSAVSINKGPK 119
Query: 469 C-VDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLI 645
C + + W Y F +G YL D + WS+C +P +V WN++LFSILL +G ++ I+C I
Sbjct: 120 CFMSQNSTWGYPF--QDGDYLGDSNLWSRCQKPSDVVPWNLTLFSILLIIGAVQIIICAI 177
Query: 646 QVINGVLGGICGYC 687
QVING+LG +CG C
Sbjct: 178 QVINGLLGTLCGDC 191
>ref|NP_001171653.1| transmembrane 4 L6 family member 18 [Bos taurus].
Length = 201
Score = 189 bits (481), Expect = 2e-48
Identities = 85/187 (45%), Positives = 123/187 (65%)
Frame = +1
Query: 121 KCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLIFLPA 300
KC C+ L LA+ I+ NILLYFPNG+ YAS N L+ +VW+F GI G+++ + A
Sbjct: 5 KCGSCLSSLLIPLALWSIIVNILLYFPNGQASYASSNKLTNYVWYFEGICFSGIMMLVVA 64
Query: 301 FVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPICVDA 480
V + LE ++ CC ENC K+ + S++ + +GIA SGYC++++ALGL +GP C
Sbjct: 65 AVLLVLENDNNYKCCQSENCSKKYMTVLSMIFSALGIAFSGYCLVISALGLLQGPYCRTL 124
Query: 481 SGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVING 660
G W Y F T G++L D W QC+EP H+VEWN+ LFSIL+AL G++ I+CLI+V+
Sbjct: 125 DG-WEYAFEGTAGRFLTDSREWIQCLEPAHVVEWNIILFSILIALSGLQVIVCLIRVVIQ 183
Query: 661 VLGGICG 681
+ +CG
Sbjct: 184 LSKSLCG 190
>ref|NP_001029459.1| transmembrane 4 L6 family member 18 [Bos taurus].
Length = 201
Score = 189 bits (481), Expect = 2e-48
Identities = 85/187 (45%), Positives = 123/187 (65%)
Frame = +1
Query: 121 KCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLIFLPA 300
KC C+ L LA+ I+ NILLYFPNG+ YAS N L+ +VW+F GI G+++ + A
Sbjct: 5 KCGSCLSSLLIPLALWSIIVNILLYFPNGQASYASSNKLTNYVWYFEGICFSGIMMLVVA 64
Query: 301 FVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPICVDA 480
V + LE ++ CC ENC K+ + S++ + +GIA SGYC++++ALGL +GP C
Sbjct: 65 AVLLVLENDNNYKCCQSENCSKKYMTVLSMIFSALGIAFSGYCLVISALGLLQGPYCRTL 124
Query: 481 SGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVING 660
G W Y F T G++L D W QC+EP H+VEWN+ LFSIL+AL G++ I+CLI+V+
Sbjct: 125 DG-WEYAFEGTAGRFLTDSREWIQCLEPAHVVEWNIILFSILIALSGLQVIVCLIRVVIQ 183
Query: 661 VLGGICG 681
+ +CG
Sbjct: 184 LSKSLCG 190
>ref|NP_001039567.1| transmembrane 4 L6 family member 5 [Bos taurus].
Length = 196
Score = 184 bits (466), Expect = 1e-46
Identities = 89/197 (45%), Positives = 127/197 (64%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC GKCAR +G SL L+++CIVAN LL PNG+T + +++HLS VW +G GGGL++
Sbjct: 1 MCTGKCARFVGLSLIPLSLVCIVANALLLVPNGQTTW-TKDHLSLQVWLMAGFVGGGLMV 59
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
P I + GCCG CG RC ML SV + IG+ G+ YC+ V+ GL GP
Sbjct: 60 LCPG---ISAVRAGGKGCCGAGCCGNRCRMLRSVFCSAIGLLGAIYCLSVSGTGLRIGPQ 116
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C+ +G W+Y F T G YL++R+ W+ C+EP +V WNV+LFS+L+A +E +LC +Q
Sbjct: 117 CL-MNGSWDYHFQDTAGSYLLNRTQWNLCVEPPDVVLWNVTLFSLLVAASCLEILLCGVQ 175
Query: 649 VINGVLGGICGYCCSRQ 699
++N +G +CG C +Q
Sbjct: 176 LVNASIGVLCGDCRKKQ 192
>ref|NP_001070449.1| transmembrane 4 L6 family member 20 [Bos taurus].
Length = 230
Score = 57.8 bits (138), Expect = 1e-08
Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 39/231 (16%)
Frame = +1
Query: 106 TMCYGKCARCIGHSLAWLAVLCIVAN---ILLYFPNGETKYASENHLSRFVWFFSGIAGG 276
T C G + C G SL L +L + N ++L F + + + EN +S F W+F GI G
Sbjct: 2 TCCEGWTS-CNGFSLLVLLLLGVTLNAIPLILNFVDEDQFF--ENPISCFEWWFPGIIGA 58
Query: 277 GLLIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLA 456
G++ + + + CC K LSS+L A I + G+ YC++V+ LA
Sbjct: 59 GVMAIPATTMSLAARKRACCN-------NKTGMFLSSLLNA-ITVIGAAYCLLVSIQALA 110
Query: 457 EGPI------------------------------------CVDASGQWNYTFASTEGKYL 528
EGP+ CV + N + +T
Sbjct: 111 EGPLICNSQSNTTSSCEFSLKNLTANYKESFDLQWFFEDSCVPHTDSNNPSITNTTANNW 170
Query: 529 VDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGICG 681
+ IE +H + + S+F LL +G +E + L Q+I G G +CG
Sbjct: 171 RVYNLHFNSIENQHRI-IHFSVFLGLLLVGILEILFGLSQIIIGFFGCLCG 220
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,689,611
Number of extensions: 1074096
Number of successful extensions: 3351
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3293
Number of HSP's successfully gapped: 6
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003814
(996 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542831.2| PREDICTED: similar to transmembrane 4 superfami... 282 4e-76
Alignment gi|XP_854442.1| PREDICTED: similar to Transmembrane 4 L6 family... 214 1e-55
Alignment gi|XP_534302.1| PREDICTED: similar to Transmembrane 4 L6 family... 193 2e-49
Alignment gi|XP_536611.1| PREDICTED: similar to transmembrane 4 superfami... 184 1e-46
Alignment gi|XP_851797.1| PREDICTED: hypothetical protein XP_846704 [Cani... 89 8e-18
Alignment gi|XP_852211.1| PREDICTED: similar to transmembrane 4 L six fam... 62 9e-10
>ref|XP_542831.2| PREDICTED: similar to transmembrane 4 superfamily member 1 [Canis
familiaris].
Length = 322
Score = 282 bits (721), Expect = 4e-76
Identities = 124/151 (82%), Positives = 144/151 (95%)
Frame = +1
Query: 262 GIAGGGLLIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVA 441
G+ ++FLPAFVFIGLE++DCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVA
Sbjct: 172 GLKACSPVMFLPAFVFIGLEEDDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVA 231
Query: 442 ALGLAEGPICVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGG 621
ALGLAEGP+C+++ GQWNYTFA+T+G+YL+D STWSQC+EPKH+VEWNVSLFSILLALGG
Sbjct: 232 ALGLAEGPLCLNSLGQWNYTFANTDGQYLLDTSTWSQCVEPKHVVEWNVSLFSILLALGG 291
Query: 622 IEFILCLIQVINGVLGGICGYCCSRQQQYDC 714
IEFILCLIQ+ING++GGICGYCCSR+Q+YDC
Sbjct: 292 IEFILCLIQIINGMIGGICGYCCSRRQRYDC 322
>ref|XP_854442.1| PREDICTED: similar to Transmembrane 4 L6 family member 4 (Intestine
and liver tetraspan membrane protein) (IL-TMP) [Canis
familiaris].
Length = 202
Score = 214 bits (544), Expect = 1e-55
Identities = 94/193 (48%), Positives = 135/193 (69%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC G CA+C+G +L L + +ANILL+FP G + +HLS VWFF GI G G+L+
Sbjct: 1 MCTGGCAKCLGSTLIPLTLFGFLANILLFFPGGRV-IDNNDHLSEEVWFFGGILGSGVLM 59
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
PA VF+GL+ DCCGCCG+E+CGKR AM +S + A+IG G+GY +++A+ + GP
Sbjct: 60 IFPALVFLGLKNNDCCGCCGNESCGKRFAMFTSTIFAVIGFLGAGYSFVISAISINRGPK 119
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C+ + W Y F +G YL D + WS+C++P+ +V WN++LFSILL +G I+ +LC+IQ
Sbjct: 120 CLMDNSTWGYPF--HDGDYLNDEALWSKCLKPEDVVPWNLTLFSILLVVGAIQMLLCVIQ 177
Query: 649 VINGVLGGICGYC 687
V+NG+LG +CG C
Sbjct: 178 VVNGLLGTLCGDC 190
>ref|XP_534302.1| PREDICTED: similar to Transmembrane 4 L6 family member 1
(Tumor-associated antigen L6) (Membrane component,
surface marker 1) (M3S1) [Canis familiaris].
Length = 201
Score = 193 bits (490), Expect = 2e-49
Identities = 87/187 (46%), Positives = 125/187 (66%)
Frame = +1
Query: 121 KCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLIFLPA 300
KC C+ L LA+ I+ NILLYFPNG+T YAS N L+ +VW+F GI G+++ + A
Sbjct: 5 KCGGCLSGLLIPLALWSIIVNILLYFPNGQTSYASSNKLTNYVWYFEGICFSGVMMLIVA 64
Query: 301 FVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPICVDA 480
V + LE + CC ENC K+ L S++ + +GIA SGYC++++ALGL +GP C
Sbjct: 65 AVLLVLENDSNYKCCQSENCSKKYMTLLSMIFSALGIAFSGYCLVISALGLVQGPYCRTL 124
Query: 481 SGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVING 660
G W Y F T G++L D S W++C+EP H+VEWN+ LFSIL+AL G++ I+CLI+V+
Sbjct: 125 DG-WEYAFEGTSGRFLTDSSRWTECLEPAHVVEWNIILFSILIALSGLQVIVCLIRVVAQ 183
Query: 661 VLGGICG 681
+ +CG
Sbjct: 184 LSKILCG 190
>ref|XP_536611.1| PREDICTED: similar to transmembrane 4 superfamily member 5 [Canis
familiaris].
Length = 197
Score = 184 bits (466), Expect = 1e-46
Identities = 85/197 (43%), Positives = 124/197 (62%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC GKC+R +G SL L+++C+VAN LL P G+T + + ++LS VW +G GGGL++
Sbjct: 1 MCTGKCSRFVGLSLIPLSLVCMVANALLLVPQGKTNWTNVSNLSLQVWLMAGFVGGGLMV 60
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
P + + GCCG CG RC ML S+ ++ G+ G+ YC+ V+ GL GPI
Sbjct: 61 LCPGIAAVRAGGK---GCCGVGCCGNRCRMLRSIFSSAFGVLGAIYCLSVSGAGLRIGPI 117
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C+ +GQW Y F TEG YL++ + W C+EP +V WNV+LFS+L+A +E +LC IQ
Sbjct: 118 CL-INGQWEYHFKDTEGSYLLNHTLWDLCVEPPGVVSWNVTLFSLLVAASCLEVVLCGIQ 176
Query: 649 VINGVLGGICGYCCSRQ 699
++N LG CG C ++
Sbjct: 177 LVNATLGVFCGDCRKKE 193
>ref|XP_851797.1| PREDICTED: hypothetical protein XP_846704 [Canis familiaris].
Length = 209
Score = 88.6 bits (218), Expect = 8e-18
Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 10/210 (4%)
Frame = +1
Query: 88 INSTTTTMCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGI 267
++S C C+ +G SL A+ N++L FPN + Y + + SG+
Sbjct: 2 LSSPDVMACSRTCSCILGLSLGTTALCAAGTNMVLLFPNWDVTYLLRGLIGKHAMLGSGL 61
Query: 268 AGGGLLIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAAL 447
GGGL++ A + + C A+LSS LA+L G+ C I + +
Sbjct: 62 WGGGLMVLTAATLISLMGWRYGCFSKSWPCRSILTALLSSGLASL----GALICFITSGV 117
Query: 448 GLAEGPICVDASGQWNYTFASTEG---------KYLVDRSTW-SQCIEPKHIVEWNVSLF 597
L +GP C+ +N T A G YL D S W S C+EP V W+VS F
Sbjct: 118 ALKDGPFCMFDGSPFNQTQAWKYGYPFQDLHNRNYLYDHSLWNSVCLEPSKAVIWHVSFF 177
Query: 598 SILLALGGIEFILCLIQVINGVLGGICGYC 687
S LL + ++ +L +I +IN LG C
Sbjct: 178 STLLCISLLQILLVVIHLINSFLGLFYSLC 207
>ref|XP_852211.1| PREDICTED: similar to transmembrane 4 L six family member 20 [Canis
familiaris].
Length = 229
Score = 62.0 bits (149), Expect = 9e-10
Identities = 62/229 (27%), Positives = 94/229 (41%), Gaps = 37/229 (16%)
Frame = +1
Query: 106 TMCYGKCARCIGHSLAWLAVLCIVANILLYFPNG-ETKYASENHLSRFVWFFSGIAGGGL 282
T C G + C G SL L + IV N + N + N +S F W+F GI G GL
Sbjct: 2 TCCEGWTS-CNGFSLLVLLLFGIVLNAIPLIVNFVDEGQFFHNPISCFEWWFPGIIGAGL 60
Query: 283 LIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEG 462
++ A + + + CC R ML S L +I I G+ YC++V+ L EG
Sbjct: 61 MVIPAATMSLAARKRACCN--------NRTGMLLSSLLNVITIIGAVYCILVSIHALIEG 112
Query: 463 PICVDASG-----------------------QWNY---TFASTEGKYLV----------D 534
P+ ++ G QW Y A T+ L +
Sbjct: 113 PLICNSEGNSTSNCEFSFSNLSDTHPEFFNLQWFYKESCIAPTDYTNLTVNSIMPSGWRE 172
Query: 535 RSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGICG 681
S E KH ++++F LL +G +E ++ Q++ G LG +CG
Sbjct: 173 HSLHFNSKENKHRT-IHLTVFLGLLLVGILELLVGFSQIVIGFLGCLCG 220
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,297,946
Number of extensions: 964891
Number of successful extensions: 3311
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3253
Number of HSP's successfully gapped: 6
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003814
(996 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055035.1| transmembrane 4 L6 family member 1 [Homo sapien... 399 e-111
Alignment gi|NP_004608.1| transmembrane 4 L6 family member 4 [Homo sapien... 218 9e-57
Alignment gi|NP_003954.2| transmembrane 4 L6 family member 5 [Homo sapien... 194 1e-49
Alignment gi|NP_001171652.1| transmembrane 4 L6 family member 18 [Homo sa... 190 2e-48
Alignment gi|NP_620141.1| transmembrane 4 L6 family member 18 [Homo sapie... 190 2e-48
Alignment gi|NP_612470.2| transmembrane 4 L6 family member 19 isoform 1 [... 101 1e-21
Alignment gi|NP_001191827.1| transmembrane 4 L6 family member 19 isoform ... 92 6e-19
Alignment gi|NP_001191826.1| transmembrane 4 L6 family member 19 isoform ... 56 5e-08
Alignment gi|NP_079071.2| transmembrane 4 L6 family member 20 [Homo sapie... 56 5e-08
>ref|NP_055035.1| transmembrane 4 L6 family member 1 [Homo sapiens].
Length = 202
Score = 399 bits (1024), Expect = e-111
Identities = 183/202 (90%), Positives = 193/202 (95%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MCYGKCARCIGHSL LA+LCI ANILLYFPNGETKYASENHLSRFVWFFSGI GGGLL+
Sbjct: 1 MCYGKCARCIGHSLVGLALLCIAANILLYFPNGETKYASENHLSRFVWFFSGIVGGGLLM 60
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
LPAFVFIGLEQ+DCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGP+
Sbjct: 61 LLPAFVFIGLEQDDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPL 120
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C+D+ GQWNYTFASTEG+YL+D STWS+C EPKHIVEWNVSLFSILLALGGIEFILCLIQ
Sbjct: 121 CLDSLGQWNYTFASTEGQYLLDTSTWSECTEPKHIVEWNVSLFSILLALGGIEFILCLIQ 180
Query: 649 VINGVLGGICGYCCSRQQQYDC 714
VINGVLGGICG+CCS QQQYDC
Sbjct: 181 VINGVLGGICGFCCSHQQQYDC 202
>ref|NP_004608.1| transmembrane 4 L6 family member 4 [Homo sapiens].
Length = 202
Score = 218 bits (554), Expect = 9e-57
Identities = 97/193 (50%), Positives = 136/193 (70%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC G CARC+G +L LA +ANILL+FP G+ +HLS+ +WFF GI G G+L+
Sbjct: 1 MCTGGCARCLGGTLIPLAFFGFLANILLFFPGGKV-IDDNDHLSQEIWFFGGILGSGVLM 59
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
PA VF+GL+ DCCGCCG+E CGKR AM +S + A++G G+GY I++A+ + +GP
Sbjct: 60 IFPALVFLGLKNNDCCGCCGNEGCGKRFAMFTSTIFAVVGFLGAGYSFIISAISINKGPK 119
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C+ A+ W Y F +G YL D + W++C EP ++V WN++LFSILL +GGI+ +LC IQ
Sbjct: 120 CLMANSTWGYPF--HDGDYLNDEALWNKCREPLNVVPWNLTLFSILLVVGGIQMVLCAIQ 177
Query: 649 VINGVLGGICGYC 687
V+NG+LG +CG C
Sbjct: 178 VVNGLLGTLCGDC 190
>ref|NP_003954.2| transmembrane 4 L6 family member 5 [Homo sapiens].
Length = 197
Score = 194 bits (492), Expect = 1e-49
Identities = 90/197 (45%), Positives = 122/197 (61%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC GKCARC+G SL L ++CIVAN LL PNGET + + NHLS VW G GGGL++
Sbjct: 1 MCTGKCARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMV 60
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
P + + GCCG CG RC ML SV ++ G+ G+ YC+ V+ GL GP
Sbjct: 61 LCPGIAAVRAGGK---GCCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVSGAGLRNGPR 117
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C+ +G+W Y F T G YL++R+ W +C P +V WNV+LFS+L+A +E +LC IQ
Sbjct: 118 CL-MNGEWGYHFEDTAGAYLLNRTLWDRCEAPPRVVPWNVTLFSLLVAASCLEIVLCGIQ 176
Query: 649 VINGVLGGICGYCCSRQ 699
++N +G CG C +Q
Sbjct: 177 LVNATIGVFCGDCRKKQ 193
>ref|NP_001171652.1| transmembrane 4 L6 family member 18 [Homo sapiens].
Length = 201
Score = 190 bits (483), Expect = 2e-48
Identities = 86/187 (45%), Positives = 122/187 (65%)
Frame = +1
Query: 121 KCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLIFLPA 300
KC C+ L LA+ I+ NILLYFPNG+T YAS N L+ +VW+F GI G+++ +
Sbjct: 5 KCGGCLSCLLIPLALWSIIVNILLYFPNGQTSYASSNKLTNYVWYFEGICFSGIMMLIVT 64
Query: 301 FVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPICVDA 480
V + LE + CC ENC K+ L S++ + +GIA SGYC++++ALGL +GP C
Sbjct: 65 TVLLVLENNNNYKCCQSENCSKKYVTLLSIIFSSLGIAFSGYCLVISALGLVQGPYCRTL 124
Query: 481 SGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVING 660
G W Y F T G++L D S W QC+EP H+VEWN+ LFSIL+ L G++ I+CLI+V+
Sbjct: 125 DG-WEYAFEGTAGRFLTDSSIWIQCLEPAHVVEWNIILFSILITLSGLQVIICLIRVVMQ 183
Query: 661 VLGGICG 681
+ +CG
Sbjct: 184 LSKILCG 190
>ref|NP_620141.1| transmembrane 4 L6 family member 18 [Homo sapiens].
Length = 201
Score = 190 bits (483), Expect = 2e-48
Identities = 86/187 (45%), Positives = 122/187 (65%)
Frame = +1
Query: 121 KCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLIFLPA 300
KC C+ L LA+ I+ NILLYFPNG+T YAS N L+ +VW+F GI G+++ +
Sbjct: 5 KCGGCLSCLLIPLALWSIIVNILLYFPNGQTSYASSNKLTNYVWYFEGICFSGIMMLIVT 64
Query: 301 FVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPICVDA 480
V + LE + CC ENC K+ L S++ + +GIA SGYC++++ALGL +GP C
Sbjct: 65 TVLLVLENNNNYKCCQSENCSKKYVTLLSIIFSSLGIAFSGYCLVISALGLVQGPYCRTL 124
Query: 481 SGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVING 660
G W Y F T G++L D S W QC+EP H+VEWN+ LFSIL+ L G++ I+CLI+V+
Sbjct: 125 DG-WEYAFEGTAGRFLTDSSIWIQCLEPAHVVEWNIILFSILITLSGLQVIICLIRVVMQ 183
Query: 661 VLGGICG 681
+ +CG
Sbjct: 184 LSKILCG 190
>ref|NP_612470.2| transmembrane 4 L6 family member 19 isoform 1 [Homo sapiens].
Length = 209
Score = 101 bits (251), Expect = 1e-21
Identities = 68/214 (31%), Positives = 100/214 (46%), Gaps = 14/214 (6%)
Frame = +1
Query: 88 INSTTTTMCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGI 267
++S T C+R +G SL A+ AN+ L PN + Y L R +G+
Sbjct: 2 VSSPCTQASSRTCSRILGLSLGTAALFAAGANVALLLPNWDVTYLLRGLLGRHAMLGTGL 61
Query: 268 AGGGLLIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIG----IAGSGYCVI 435
GGGL++ L A + I L C + + SVL AL+ + G+ C +
Sbjct: 62 WGGGLMV-LTAAILISLMG-------WRYGCFSKSGLCRSVLTALLSGGLALLGALICFV 113
Query: 436 VAALGLAEGPICVDASGQWNYTFASTEG---------KYLVDRSTW-SQCIEPKHIVEWN 585
+ + L +GP C+ +N T A G YL DRS W S C+EP V W+
Sbjct: 114 TSGVALKDGPFCMFDVSSFNQTQAWKYGYPFKDLHSRNYLYDRSLWNSVCLEPSAAVVWH 173
Query: 586 VSLFSILLALGGIEFILCLIQVINGVLGGICGYC 687
VSLFS LL + ++ +L ++ VIN +LG C C
Sbjct: 174 VSLFSALLCISLLQLLLVVVHVINSLLGLFCSLC 207
>ref|NP_001191827.1| transmembrane 4 L6 family member 19 isoform 3 [Homo sapiens].
Length = 183
Score = 92.4 bits (228), Expect = 6e-19
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Frame = +1
Query: 88 INSTTTTMCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGI 267
++S T C+R +G SL A+ AN+ L PN + Y L R +G+
Sbjct: 2 VSSPCTQASSRTCSRILGLSLGTAALFAAGANVALLLPNWDVTYLLRGLLGRHAMLGTGL 61
Query: 268 AGGGLLIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAAL 447
GGGL++ L+++L+ + + G+ C + + +
Sbjct: 62 WGGGLMV------------------------------LTALLSGGLALLGALICFVTSGV 91
Query: 448 GLAEGPICVDASGQWNYTFASTEG---------KYLVDRSTW-SQCIEPKHIVEWNVSLF 597
L +GP C+ +N T A G YL DRS W S C+EP V W+VSLF
Sbjct: 92 ALKDGPFCMFDVSSFNQTQAWKYGYPFKDLHSRNYLYDRSLWNSVCLEPSAAVVWHVSLF 151
Query: 598 SILLALGGIEFILCLIQVINGVLGGICGYC 687
S LL + ++ +L ++ VIN +LG C C
Sbjct: 152 SALLCISLLQLLLVVVHVINSLLGLFCSLC 181
>ref|NP_001191826.1| transmembrane 4 L6 family member 19 isoform 2 [Homo sapiens].
Length = 242
Score = 56.2 bits (134), Expect = 5e-08
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Frame = +1
Query: 88 INSTTTTMCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGI 267
++S T C+R +G SL A+ AN+ L PN + Y L R +G+
Sbjct: 2 VSSPCTQASSRTCSRILGLSLGTAALFAAGANVALLLPNWDVTYLLRGLLGRHAMLGTGL 61
Query: 268 AGGGLLIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAAL----IGIAGSGYCVI 435
GGGL++ L A + I L C + + SVL AL + + G+ C +
Sbjct: 62 WGGGLMV-LTAAILISL-------MGWRYGCFSKSGLCRSVLTALLSGGLALLGALICFV 113
Query: 436 VAALGLAEGPICVDASGQWNYTFA 507
+ + L +GP C+ +N T A
Sbjct: 114 TSGVALKDGPFCMFDVSSFNQTQA 137
>ref|NP_079071.2| transmembrane 4 L6 family member 20 [Homo sapiens].
Length = 229
Score = 56.2 bits (134), Expect = 5e-08
Identities = 62/236 (26%), Positives = 93/236 (39%), Gaps = 37/236 (15%)
Frame = +1
Query: 106 TMCYGKCARCIGHSLAWLAVLCIVANIL-LYFPNGETKYASENHLSRFVWFFSGIAGGGL 282
T C G + C G SL L +L +V N + L E S+N +S F W+F GI G GL
Sbjct: 2 TCCEGWTS-CNGFSLLVLLLLGVVLNAIPLIVSLVEEDQFSQNPISCFEWWFPGIIGAGL 60
Query: 283 LIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEG 462
+ +PA ++ C C R M S L ++I + G+ YC++++ L +G
Sbjct: 61 MA-IPATTMSLTARKRAC-------CNNRTGMFLSSLFSVITVIGALYCMLISIQALLKG 112
Query: 463 PI------------------------------------CVDASGQWNYTFASTEGKYLVD 534
P+ C +G T T
Sbjct: 113 PLMCNSPSNSNANCEFSLKNISDIHPESFNLQWFFNDSCAPPTGFNKPTSNDTMASGWRA 172
Query: 535 RSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGICGYCCSRQQ 702
S E KH + + S+F LL +G +E + L Q++ G LG +CG R Q
Sbjct: 173 SSFHFDSEENKHRL-IHFSVFLGLLLVGILEVLFGLSQIVIGFLGCLCGVSKRRSQ 227
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,838,772
Number of extensions: 950627
Number of successful extensions: 3253
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3205
Number of HSP's successfully gapped: 9
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003814
(996 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032562.1| transmembrane 4 L6 family member 1 [Mus musculu... 352 3e-97
Alignment gi|NP_663514.2| transmembrane 4 L6 family member 4 [Mus musculu... 226 3e-59
Alignment gi|NP_083636.2| transmembrane 4 superfamily member 5 [Mus muscu... 177 9e-45
Alignment gi|NP_001153874.1| transmembrane 4 L six family member 19 [Mus ... 100 3e-21
Alignment gi|NP_079729.1| transmembrane 4 L6 family member 20 [Mus muscul... 64 2e-10
>ref|NP_032562.1| transmembrane 4 L6 family member 1 [Mus musculus].
Length = 202
Score = 352 bits (903), Expect = 3e-97
Identities = 159/202 (78%), Positives = 181/202 (89%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MCY KCAR IG+SL W AV CIVAN LLYFPNGETKYA+E+HLSRFVW+F+GI GGGLL+
Sbjct: 1 MCYVKCARYIGYSLVWAAVFCIVANALLYFPNGETKYATEDHLSRFVWYFAGIVGGGLLM 60
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
LPAFVFIG+++EDCCGCCG+EN GKRC+MLSSVLAALIGI GS YCVIVA+LGLAEGP
Sbjct: 61 LLPAFVFIGMDEEDCCGCCGYENYGKRCSMLSSVLAALIGIVGSAYCVIVASLGLAEGPK 120
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C DA G WNYTFASTEG+YL++ S WS+C EPKHIVEW+V+LFSILLA +EFILCLIQ
Sbjct: 121 CSDAHGVWNYTFASTEGQYLLNSSMWSKCYEPKHIVEWHVTLFSILLAFAAVEFILCLIQ 180
Query: 649 VINGVLGGICGYCCSRQQQYDC 714
VING+LGG+CGYCCSRQQQY+C
Sbjct: 181 VINGMLGGLCGYCCSRQQQYNC 202
>ref|NP_663514.2| transmembrane 4 L6 family member 4 [Mus musculus].
Length = 202
Score = 226 bits (575), Expect = 3e-59
Identities = 104/193 (53%), Positives = 139/193 (72%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC G CARC+G +L LAV ++ANILL+FP G+ ++HLS VW+F GI G G+L+
Sbjct: 1 MCTGGCARCLGGTLIPLAVFGLLANILLFFPGGKV-VNDKSHLSDEVWYFGGILGSGVLM 59
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
PA VF+GL+ DCCGCCG+E CGKR AM +S L A+IG G+GY IV+A+ + +GP
Sbjct: 60 IFPALVFLGLQNNDCCGCCGNEGCGKRFAMFTSTLFAVIGFLGAGYSFIVSAVSINKGPK 119
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C A+G W Y F +G YL D++ WS+C EP+ +V WN++LFSILL +GGI+ +LC IQ
Sbjct: 120 CFMANGTWGYPF--HDGDYLKDQALWSECKEPRDVVPWNLTLFSILLVIGGIQMVLCAIQ 177
Query: 649 VINGVLGGICGYC 687
VING+LG +CG C
Sbjct: 178 VINGLLGTLCGDC 190
>ref|NP_083636.2| transmembrane 4 superfamily member 5 [Mus musculus].
Length = 196
Score = 177 bits (450), Expect = 9e-45
Identities = 87/197 (44%), Positives = 119/197 (60%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC GKCARC+G SL L+++CIVAN LL P+G+T + N LS VW G GGGL++
Sbjct: 1 MCTGKCARCLGLSLIPLSLVCIVANALLLVPDGKTTWTDGN-LSLQVWLMGGFIGGGLMV 59
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
P + + GCCG CG RC ML SV ++ G+ G+ YC+ VA GL GP
Sbjct: 60 LCPGIAAVRAGGK---GCCGAGCCGNRCRMLRSVFSSAFGVLGAIYCLSVAGAGLRIGPK 116
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
C+ +W+Y F TEG YL + + W+ C P H+V WNV+LFSIL+ +E +LC IQ
Sbjct: 117 CL-IDNKWDYHFQETEGAYLRNDTLWNLCEAPPHVVPWNVTLFSILVVASSLELVLCGIQ 175
Query: 649 VINGVLGGICGYCCSRQ 699
++N G +CG C ++
Sbjct: 176 LVNATFGVLCGDCRKKE 192
>ref|NP_001153874.1| transmembrane 4 L six family member 19 [Mus musculus].
Length = 206
Score = 99.8 bits (247), Expect = 3e-21
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 11/203 (5%)
Frame = +1
Query: 112 CYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLIF 291
C C+R +G SL ++ ANI L FPN + Y + + SG+ GGGL++
Sbjct: 10 CSRTCSRFLGLSLGTASLCAAGANIALLFPNWDVTYLMRGLIGKHAMLGSGLWGGGLMVL 69
Query: 292 LPAFVFIGLEQEDCCGCCGHENCGKRCA-MLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
L A + G + C +L ++L++ + + G+ C + + + L +GP
Sbjct: 70 LAATLI---------SMTGSFSKSAPCLQVLIALLSSGLALLGAVICFVTSGVALKDGPF 120
Query: 469 CVDASGQWNYTFASTEG---------KYLVDRSTW-SQCIEPKHIVEWNVSLFSILLALG 618
C+ +N T A G YL DRS W S C+EP V W+V+ FSILL +
Sbjct: 121 CMFDVSSFNQTQAWKFGYPFKDLHNRNYLYDRSLWTSVCLEPSKAVVWHVAFFSILLCIS 180
Query: 619 GIEFILCLIQVINGVLGGICGYC 687
++ +L I ++N +LG C +C
Sbjct: 181 LLQLLLVAIHLVNSILGLFCSFC 203
>ref|NP_079729.1| transmembrane 4 L6 family member 20 [Mus musculus].
Length = 226
Score = 63.5 bits (153), Expect = 2e-10
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 33/232 (14%)
Frame = +1
Query: 106 TMCYGKCARCIGHSLAWLAVLCIVANIL-LYFPNGETKYASENHLSRFVWFFSGIAGGGL 282
T C G + C G SL L +L +V N + L E S+N +S + W+F GI G GL
Sbjct: 2 TCCEGWTS-CNGFSLLILILLGVVINCIPLGISLVEADSTSQNPISCYEWWFPGIIGAGL 60
Query: 283 LIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEG 462
+ + + + CC + M S L ++I + G+ YC++V+ L EG
Sbjct: 61 MAIPATTMSLAARKRACCN--------NKTGMFLSSLFSVITVVGAVYCMLVSLQALLEG 112
Query: 463 PICVDASGQWNYTFA-STEGKYLVDRSTWS-------QCIEP---------KHIVEWNV- 588
P+ + T S + D +++ C+ P + W +
Sbjct: 113 PLICNTQANSTVTCEFSLKNLSKFDPESFNLLWFFNGTCVSPTDFKNPTINNMVSNWKIP 172
Query: 589 --------------SLFSILLALGGIEFILCLIQVINGVLGGICGYCCSRQQ 702
S+F LL +G +E + L Q++ G LG +CG R Q
Sbjct: 173 NSNSEEDRHRIFHFSVFMSLLLVGILELLFGLSQILIGFLGCLCGVSQRRSQ 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,480,616
Number of extensions: 817139
Number of successful extensions: 2761
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2721
Number of HSP's successfully gapped: 5
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003814
(996 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132526.1| PREDICTED: transmembrane 4 L6 family member ... 431 e-121
Alignment gi|XP_003132528.2| PREDICTED: transmembrane 4 L6 family member ... 207 7e-54
Alignment gi|XP_003132527.1| PREDICTED: transmembrane 4 L6 family member ... 196 2e-50
Alignment gi|XP_003361083.1| PREDICTED: transmembrane 4 L6 family member ... 136 2e-32
Alignment gi|XP_003358654.1| PREDICTED: transmembrane 4 L6 family member ... 118 6e-27
Alignment gi|XP_003131959.2| PREDICTED: transmembrane 4 L6 family member ... 108 4e-24
Alignment gi|XP_003360664.1| PREDICTED: transmembrane 4 L6 family member ... 97 2e-20
Alignment gi|XP_003358273.1| PREDICTED: transmembrane 4 L6 family member ... 81 8e-16
Alignment gi|XP_003133742.1| PREDICTED: transmembrane 4 L6 family member ... 57 2e-08
>ref|XP_003132526.1| PREDICTED: transmembrane 4 L6 family member 1-like [Sus scrofa].
Length = 202
Score = 431 bits (1108), Expect = e-121
Identities = 202/202 (100%), Positives = 202/202 (100%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI
Sbjct: 1 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 60
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI
Sbjct: 61 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 120
Query: 469 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 648
CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ
Sbjct: 121 CVDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQ 180
Query: 649 VINGVLGGICGYCCSRQQQYDC 714
VINGVLGGICGYCCSRQQQYDC
Sbjct: 181 VINGVLGGICGYCCSRQQQYDC 202
>ref|XP_003132528.2| PREDICTED: transmembrane 4 L6 family member 4-like [Sus scrofa].
Length = 203
Score = 207 bits (527), Expect = 7e-54
Identities = 94/194 (48%), Positives = 133/194 (68%), Gaps = 1/194 (0%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC G CA+C+G +L L V +ANILL+FP G+ + +HLS VW F GI G G+L+
Sbjct: 1 MCTGSCAKCLGGTLIPLTVFGFLANILLFFPGGKV-IDNNDHLSDEVWLFGGILGSGVLM 59
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPI 468
PA VF+GL+ DCCGCCG+E+CGKR AM +S + A++G G+GY I++A+ + +GP
Sbjct: 60 IFPALVFLGLKNNDCCGCCGNESCGKRFAMFTSTIFAVVGFLGAGYSFIISAVSINKGPK 119
Query: 469 C-VDASGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLI 645
C + + W Y F +G YL +R WS C +P ++V WN++LFSILL GG++ ++C I
Sbjct: 120 CFIARNSTWGYPF--QDGDYLSNRDLWSNCQKPDNVVPWNLTLFSILLITGGVQMLICAI 177
Query: 646 QVINGVLGGICGYC 687
QVING+LG +CG C
Sbjct: 178 QVINGLLGTLCGDC 191
>ref|XP_003132527.1| PREDICTED: transmembrane 4 L6 family member 18-like [Sus scrofa].
Length = 201
Score = 196 bits (498), Expect = 2e-50
Identities = 88/187 (47%), Positives = 127/187 (67%)
Frame = +1
Query: 121 KCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLIFLPA 300
KC C+ L LA+ I+ NILLYFPNG+ YAS N L+ +VW+F G+ G+++ + A
Sbjct: 5 KCGCCLSSLLIPLALWSIIVNILLYFPNGQMSYASSNKLTNYVWYFEGLCFSGIMMLIVA 64
Query: 301 FVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPICVDA 480
V + LE ++ CC ENC K+ +L S++ + +GIA SGYC++++ALGL +GP C
Sbjct: 65 AVLLVLENDNNYKCCQSENCSKKYMILMSMIFSALGIAFSGYCLVISALGLLQGPYCRTL 124
Query: 481 SGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVING 660
G W Y F T G++L D STWSQC+EP H+VEWN+ LFSIL+AL G++ I+CLI+V+
Sbjct: 125 DG-WEYAFEGTAGRFLTDSSTWSQCLEPAHVVEWNIILFSILIALSGLQVIVCLIRVVIQ 183
Query: 661 VLGGICG 681
+ +CG
Sbjct: 184 LFKILCG 190
>ref|XP_003361083.1| PREDICTED: transmembrane 4 L6 family member 18-like, partial [Sus
scrofa].
Length = 172
Score = 136 bits (342), Expect = 2e-32
Identities = 70/187 (37%), Positives = 105/187 (56%)
Frame = +1
Query: 121 KCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLIFLPA 300
KC C+ L LA+ I+ NILLYFPNG+ YAS N L+ +VW+F G+ G+++ + A
Sbjct: 5 KCGCCLSSLLIPLALWSIIVNILLYFPNGQMSYASSNKLTNYVWYFEGLCFSGIMMLIVA 64
Query: 301 FVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPICVDA 480
V + LE ++ CC ENC K+ +V A+ + + +
Sbjct: 65 AVLLVLENDNNYKCCQSENCSKK--------------------YMVRAIEIVNRVLVI-- 102
Query: 481 SGQWNYTFASTEGKYLVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVING 660
W+ + T +L D STWSQC+EP H+VEWN+ LFSIL+AL G++ I+CLI+V+
Sbjct: 103 --SWDIYISRT--CFLTDSSTWSQCLEPAHVVEWNIILFSILIALSGLQVIVCLIRVVIQ 158
Query: 661 VLGGICG 681
+ +CG
Sbjct: 159 LFKILCG 165
>ref|XP_003358654.1| PREDICTED: transmembrane 4 L6 family member 18-like [Sus scrofa].
Length = 144
Score = 118 bits (295), Expect = 6e-27
Identities = 51/99 (51%), Positives = 73/99 (73%)
Frame = +1
Query: 385 SVLAALIGIAGSGYCVIVAALGLAEGPICVDASGQWNYTFASTEGKYLVDRSTWSQCIEP 564
S++ + +GIA SGYC++++ALGL +GP C G W Y F T G++L D STWSQC+EP
Sbjct: 2 SMIFSALGIAFSGYCLVISALGLLQGPYCRTLDG-WEYAFEGTAGRFLTDSSTWSQCLEP 60
Query: 565 KHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGICG 681
H+VEWN+ LFSIL+AL G++ I+CLI+V+ + +CG
Sbjct: 61 AHVVEWNIILFSILIALSGLQVIVCLIRVVIQLFKILCG 99
>ref|XP_003131959.2| PREDICTED: transmembrane 4 L6 family member 5-like [Sus scrofa].
Length = 122
Score = 108 bits (271), Expect = 4e-24
Identities = 50/114 (43%), Positives = 70/114 (61%)
Frame = +1
Query: 346 GHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPICVDASGQWNYTFASTEGKY 525
G E K C ML SV + G+ G+ YC+ V+ GL GP C +G W Y F T G Y
Sbjct: 3 GDELGNKGCEMLRSVFCSAFGMLGAIYCLSVSGAGLRTGPKCF-MNGSWGYHFEETAGSY 61
Query: 526 LVDRSTWSQCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGICGYC 687
L++R+ WS C+EP +V WNV+LFS+L+A +E +LC +Q++N +G CG C
Sbjct: 62 LLNRTQWSLCVEPPGVVYWNVTLFSLLVAASCLEILLCGVQLVNACIGVFCGDC 115
>ref|XP_003360664.1| PREDICTED: transmembrane 4 L6 family member 19-like [Sus scrofa].
Length = 209
Score = 96.7 bits (239), Expect = 2e-20
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 10/209 (4%)
Frame = +1
Query: 91 NSTTTTMCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIA 270
+S C C+R +G SL A+ N L FPN + Y + R SG+
Sbjct: 3 SSPCAMACSRTCSRILGLSLGATALFAAATNTALLFPNWDVTYLLRGLIGRQAMLGSGLW 62
Query: 271 GGGLLIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALG 450
GGGL++ A + + C G +ML+++L++ + + G+ C I + +
Sbjct: 63 GGGLMVLTAAILISLMGWRRGC----FSKSGPCQSMLTALLSSGLALFGALICFITSGVA 118
Query: 451 LAEGPICV------DASGQWNYTFASTE---GKYLVDRSTW-SQCIEPKHIVEWNVSLFS 600
L +GP C+ + + W Y + + YL D S W S C+EP V W+V FS
Sbjct: 119 LKDGPFCMFHVSSFNQTQTWKYGYPFKDLHNRNYLYDHSLWNSVCLEPSKAVIWHVGFFS 178
Query: 601 ILLALGGIEFILCLIQVINGVLGGICGYC 687
+LL + ++ +L I IN LG C C
Sbjct: 179 VLLCISLLQILLVAIHFINSFLGFFCSLC 207
>ref|XP_003358273.1| PREDICTED: transmembrane 4 L6 family member 5-like [Sus scrofa].
Length = 105
Score = 81.3 bits (199), Expect = 8e-16
Identities = 42/95 (44%), Positives = 58/95 (61%)
Frame = +1
Query: 109 MCYGKCARCIGHSLAWLAVLCIVANILLYFPNGETKYASENHLSRFVWFFSGIAGGGLLI 288
MC GKCAR +G SL L+++CIVAN LL PN +T + +++HLS VW +G GGGL++
Sbjct: 1 MCTGKCARFVGLSLIPLSLVCIVANALLLVPNAKTTW-TKDHLSLQVWLMAGFIGGGLMV 59
Query: 289 FLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVL 393
P + + GCCG CG RC L++ L
Sbjct: 60 LCPGIAAVRAGGK---GCCGAGCCGNRCRGLNTGL 91
>ref|XP_003133742.1| PREDICTED: transmembrane 4 L6 family member 20-like [Sus scrofa].
Length = 227
Score = 57.0 bits (136), Expect = 2e-08
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Frame = +1
Query: 106 TMCYGKCARCIGHSLAWLAVLCIVANILLYFPN-GETKYASENHLSRFVWFFSGIAGGGL 282
T C G A C G SL L +L ++ N + + N + +N +S F +F GI G GL
Sbjct: 2 TCCEGWTA-CNGFSLLVLLLLGVILNAIPFVVNLVDEDEVFQNPISCFERWFPGIVGAGL 60
Query: 283 LIFLPAFVFIGLEQEDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEG 462
+ + + + CC + M S L +I + G GYC++V+ L EG
Sbjct: 61 MAIPATTMSLAARKRACCN--------NKSGMFLSSLLNVITVIGGGYCLLVSFQALWEG 112
Query: 463 PICVDASG-----------------------QWNYT---FASTE--GKYLVDRSTWS--- 549
P+ ++ QW + AST+ Y+ D + +
Sbjct: 113 PLICNSQSNSTLSCEISLRNLTVHHLDSLNLQWFFNDSCVASTDFNNPYINDTAIRNGLN 172
Query: 550 -QCIEPKHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGIC 678
+E KH + + S++ LL +G +E + L Q++ G LG +C
Sbjct: 173 FDSLENKHRI-IHFSVYLGLLLVGFLEILFGLSQILIGFLGCLC 215
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,709,926
Number of extensions: 877450
Number of successful extensions: 2107
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2068
Number of HSP's successfully gapped: 11
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003814
(996 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 559 e-156
>Sscrofa_Chr13
|| Length = 218635234
Score = 559 bits (282), Expect = e-156
Identities = 282/282 (100%)
Strand = Plus / Minus
Query: 4 actccttttgctttctccacaaacaggcacgctttcatctgatctgggccattgctgagc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97603431 actccttttgctttctccacaaacaggcacgctttcatctgatctgggccattgctgagc 97603372
Query: 64 cgccgcacagtgaaggagaaagaaataaactccaccaccaccaccatgtgctacgggaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97603371 cgccgcacagtgaaggagaaagaaataaactccaccaccaccaccatgtgctacgggaag 97603312
Query: 124 tgtgctcggtgcatcggacactctctggcctggctcgccgtcctctgtatcgtagctaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97603311 tgtgctcggtgcatcggacactctctggcctggctcgccgtcctctgtatcgtagctaat 97603252
Query: 184 attttgctttactttcccaatggggagacaaagtatgcttctgaaaaccatctcagccgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97603251 attttgctttactttcccaatggggagacaaagtatgcttctgaaaaccatctcagccgc 97603192
Query: 244 tttgtgtggttcttctctggcattgcaggagggggcttgctg 285
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97603191 tttgtgtggttcttctctggcattgcaggagggggcttgctg 97603150
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 522 ataccttgtggataggtccacgtggtcccagtgcattgagcccaagcacattgtggaatg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97598717 ataccttgtggataggtccacgtggtcccagtgcattgagcccaagcacattgtggaatg 97598658
Query: 582 gaatgtctctctgttttctatcctcctggcacttggtggaattgaattcatcttgtgtct 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97598657 gaatgtctctctgttttctatcctcctggcacttggtggaattgaattcatcttgtgtct 97598598
Query: 642 cattcaagtaataaatggagtgcttggaggcatctgtggctattgctgctctcgccaaca 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97598597 cattcaagtaataaatggagtgcttggaggcatctgtggctattgctgctctcgccaaca 97598538
Query: 702 g 702
|
Sbjct: 97598537 g 97598537
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 699 acagcaatatgactgctaaaagaaccaccccaaggcaggtccacaactttcctcgaagtt 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97596674 acagcaatatgactgctaaaagaaccaccccaaggcaggtccacaactttcctcgaagtt 97596615
Query: 759 gctgtaatttatatattttacttgtattaatttgtaaaactttgtactagtgtatcatat 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97596614 gctgtaatttatatattttacttgtattaatttgtaaaactttgtactagtgtatcatat 97596555
Query: 819 gccacatgttctacttttataagtgtgtataaagactggcatctt 863
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97596554 gccacatgttctacttttataagtgtgtataaagactggcatctt 97596510
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 375 gatgctttcttccgtgctggctgctctcatcggaattgcaggatctgggtactgcgtcat 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97601453 gatgctttcttccgtgctggctgctctcatcggaattgcaggatctgggtactgcgtcat 97601394
Query: 435 tgtggccgcactgggcttagcggaaggaccaatatgtgttgatgccagtggccagtggaa 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97601393 tgtggccgcactgggcttagcggaaggaccaatatgtgttgatgccagtggccagtggaa 97601334
Query: 495 ctacacctttgccagcacggagggaaa 521
|||||||||||||||||||||||||||
Sbjct: 97601333 ctacacctttgccagcacggagggaaa 97601307
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 285 gatattcctgccggcattcgtctttatcgggctggaacaggaagactgctgtggctgctg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97601635 gatattcctgccggcattcgtctttatcgggctggaacaggaagactgctgtggctgctg 97601576
Query: 345 cggccatgaaaactgcggcaagagatgtgcg 375
|||||||||||||||||||||||||||||||
Sbjct: 97601575 cggccatgaaaactgcggcaagagatgtgcg 97601545
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,533,526
Number of extensions: 248
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 5
Length of query: 996
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 975
Effective length of database: 2,808,413,156
Effective search space: 2738202827100
Effective search space used: 2738202827100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)