Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003818
(1018 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029533.1| amiloride-sensitive amine oxidase [Bos tauru... 493 e-140
Alignment gi|XP_002696078.1| PREDICTED: primary amine oxidase, liver isoz... 179 5e-45
Alignment gi|XP_002702267.1| PREDICTED: primary amine oxidase, liver isoz... 179 5e-45
Alignment gi|NP_001124236.1| primary amine oxidase, liver isozyme precurs... 177 2e-44
Alignment gi|XP_002702264.1| PREDICTED: primary amine oxidase, liver isoz... 177 2e-44
Alignment gi|NP_001193790.1| retina-specific copper amine oxidase [Bos ta... 167 1e-41
Alignment gi|XP_002702253.1| PREDICTED: primary amine oxidase, lung isozy... 167 1e-41
Alignment gi|XP_002702252.1| PREDICTED: primary amine oxidase, lung isozy... 167 1e-41
Alignment gi|NP_851345.1| primary amine oxidase, lung isozyme [Bos taurus]. 167 2e-41
>ref|NP_001029533.1| amiloride-sensitive amine oxidase [Bos taurus].
Length = 755
Score = 493 bits (1270), Expect = e-140
Identities = 236/300 (78%), Positives = 264/300 (88%)
Frame = +3
Query: 117 ERSPRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKK 296
E +P+TPG K VFADLSAQELKAVHSFLWSQKEL+LEPS TLT+AKNSVFLIEMLLPKK
Sbjct: 25 EGAPQTPGDKGRVFADLSAQELKAVHSFLWSQKELRLEPSNTLTVAKNSVFLIEMLLPKK 84
Query: 297 QHVLKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLPPRPGHQVSWA 476
QHVLKFLDKGHR PVREARA+IFFGAQEQPN+TEFAVGPLP PRY+R LPPRP HQ SWA
Sbjct: 85 QHVLKFLDKGHRPPVREARAIIFFGAQEQPNITEFAVGPLPRPRYLRHLPPRPRHQASWA 144
Query: 477 SRPISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRT 656
SRPISKAEYALLSH L+EAT+PLR FF T G+ FG+C ++CLTFTDVAPRG+ASGQRR+
Sbjct: 145 SRPISKAEYALLSHTLEEATKPLRAFFWRTAGAVFGNCSQRCLTFTDVAPRGVASGQRRS 204
Query: 657 WFILQRQMPGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVD 836
WFILQ Q+ GYFLHPTG+ELL+DHGS N +DWTVE+VWYNG+FYRSPEELAQKY+DGEVD
Sbjct: 205 WFILQLQIEGYFLHPTGMELLLDHGSPNPRDWTVERVWYNGRFYRSPEELAQKYDDGEVD 264
Query: 837 VVILEDPLAKGKDGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGNRVMYGG 1016
V+LEDPLAKGKDG +LPE ALFS Q RGD V+ GP +VQPQG RYSL+G+ V Y G
Sbjct: 265 AVVLEDPLAKGKDGANLPEAALFSSYQLRGDLGVSKSGPRLVQPQGARYSLDGHTVRYAG 324
>ref|XP_002696078.1| PREDICTED: primary amine oxidase, liver isozyme-like [Bos taurus].
Length = 787
Score = 179 bits (453), Expect = 5e-45
Identities = 114/302 (37%), Positives = 159/302 (52%), Gaps = 9/302 (2%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL AV SFL Q L + + N VF +E+ LP K
Sbjct: 49 PWTHPDQSQLFADLSREELTAVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAA 108
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A++FFG Q QPNVTE VGPLP P YMRD+ R G + + R
Sbjct: 109 LAHLDRGSPPPAREALAIVFFGKQPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYYRR 168
Query: 483 PISKAEY-----ALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQ 647
P+ EY + + +L +A L G Q L + APRG+ SG
Sbjct: 169 PVLLREYLDIDQMIFNRELPQAAGVLHHCCSYKQGG-------QKLVTMNSAPRGVQSGD 221
Query: 648 RRTWFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYN 821
R TWF L + G+FLHP GLELLVDH + + WT+++V++ G++Y S +L +++
Sbjct: 222 RATWFGLYYNISGAGFFLHPVGLELLVDHKALDPAQWTIQKVFFQGRYYESLAQLEEQFE 281
Query: 822 DGEVDVVILEDPLAKGKDGE-SLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGN 998
G+V+VV++ D G G SL + + P PQGPR+ ++GN
Sbjct: 282 AGQVNVVVIPD---NGTGGSWSL-----------KSQVPPGLAPPLQFHPQGPRFRVQGN 327
Query: 999 RV 1004
RV
Sbjct: 328 RV 329
>ref|XP_002702267.1| PREDICTED: primary amine oxidase, liver isozyme-like [Bos taurus].
Length = 787
Score = 179 bits (453), Expect = 5e-45
Identities = 114/302 (37%), Positives = 159/302 (52%), Gaps = 9/302 (2%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL AV SFL Q L + + N VF +E+ LP K
Sbjct: 49 PWTHPDQSQLFADLSREELTAVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAA 108
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A++FFG Q QPNVTE VGPLP P YMRD+ R G + + R
Sbjct: 109 LAHLDRGSPPPAREALAIVFFGKQPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYYRR 168
Query: 483 PISKAEY-----ALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQ 647
P+ EY + + +L +A L G Q L + APRG+ SG
Sbjct: 169 PVLLREYLDIDQMIFNRELPQAAGVLHHCCSYKQGG-------QKLVTMNSAPRGVQSGD 221
Query: 648 RRTWFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYN 821
R TWF L + G+FLHP GLELLVDH + + WT+++V++ G++Y S +L +++
Sbjct: 222 RATWFGLYYNISGAGFFLHPVGLELLVDHKALDPAQWTIQKVFFQGRYYESLAQLEEQFE 281
Query: 822 DGEVDVVILEDPLAKGKDGE-SLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGN 998
G+V+VV++ D G G SL + + P PQGPR+ ++GN
Sbjct: 282 AGQVNVVVIPD---NGTGGSWSL-----------KSQVPPGLAPPLQFHPQGPRFRVQGN 327
Query: 999 RV 1004
RV
Sbjct: 328 RV 329
>ref|NP_001124236.1| primary amine oxidase, liver isozyme precursor [Bos taurus].
Length = 762
Score = 177 bits (448), Expect = 2e-44
Identities = 112/301 (37%), Positives = 157/301 (52%), Gaps = 8/301 (2%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL V SFL Q L + + N VF +E+ LP K
Sbjct: 49 PWTHPDQSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAA 108
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A++FFG Q QPNVTE VGPLP P YMRD+ R G + + R
Sbjct: 109 LAHLDRGSPPPAREALAIVFFGGQPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYYRR 168
Query: 483 PISKAEY-----ALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQ 647
P+ EY + + +L +A L G Q L + APRG+ SG
Sbjct: 169 PVLLREYLDIDQMIFNRELPQAAGVLHHCCSYKQGG-------QKLLTMNSAPRGVQSGD 221
Query: 648 RRTWFILQRQMP--GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYN 821
R TWF + + G +LHP GLELLVDH + + DWTV++V++ G++Y + +L +++
Sbjct: 222 RSTWFGIYYNITKGGPYLHPVGLELLVDHKALDPADWTVQKVFFQGRYYENLAQLEEQFE 281
Query: 822 DGEVDVVILEDPLAKGKDGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGNR 1001
G+V+VV++ D DG F + P PQGPR+S++GNR
Sbjct: 282 AGQVNVVVIPD------DGTG-------GFWSLKSQVPPGPTPPLQFHPQGPRFSVQGNR 328
Query: 1002 V 1004
V
Sbjct: 329 V 329
>ref|XP_002702264.1| PREDICTED: primary amine oxidase, liver isozyme-like [Bos taurus].
Length = 755
Score = 177 bits (448), Expect = 2e-44
Identities = 112/301 (37%), Positives = 157/301 (52%), Gaps = 8/301 (2%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL V SFL Q L + + N VF +E+ LP K
Sbjct: 45 PWTHPDQSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAA 104
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A++FFG Q QPNVTE VGPLP P YMRD+ R G + + R
Sbjct: 105 LAHLDRGSPPPAREALAIVFFGGQPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYYRR 164
Query: 483 PISKAEY-----ALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQ 647
P+ EY + + +L +A L G Q L + APRG+ SG
Sbjct: 165 PVLLREYLDIDQMIFNRELPQAAGVLHHCCSYKQGG-------QKLLTMNSAPRGVQSGD 217
Query: 648 RRTWFILQRQMP--GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYN 821
R TWF + + G +LHP GLELLVDH + + DWTV++V++ G++Y + +L +++
Sbjct: 218 RSTWFGIYYNITKGGPYLHPVGLELLVDHKALDPADWTVQKVFFQGRYYENLAQLEEQFE 277
Query: 822 DGEVDVVILEDPLAKGKDGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGNR 1001
G+V+VV++ D DG F + P PQGPR+S++GNR
Sbjct: 278 AGQVNVVVIPD------DGTG-------GFWSLKSQVPPGPTPPLQFHPQGPRFSVQGNR 324
Query: 1002 V 1004
V
Sbjct: 325 V 325
>ref|NP_001193790.1| retina-specific copper amine oxidase [Bos taurus].
Length = 756
Score = 167 bits (423), Expect = 1e-41
Identities = 110/296 (37%), Positives = 149/296 (50%), Gaps = 3/296 (1%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL AV SFL + L + + N +F +E+ LP K
Sbjct: 46 PWTHPGQSQLFADLSREELMAVMSFLTQKLGPDLADAAQARPSDNCIFSVELQLPPKAAA 105
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A++FFG Q QPNVTE VGPLP P YMRD+ R G + + R
Sbjct: 106 LAHLDRGRPPPAREALAIVFFGRQPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYHRR 165
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWF 662
P+ E A + L++ P F ++ + G L PRGL SG R TW
Sbjct: 166 PVLATESAQMWMHLKKVEFPKAPVFLASVFNYNG----STLAALHATPRGLRSGDRATWI 221
Query: 663 ILQRQMP--GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVD 836
L + G FLHP GLELL+DH + + W V+QV+Y G +Y +L ++ G +D
Sbjct: 222 ALYHNISGVGIFLHPVGLELLLDHRALDPAHWAVQQVFYLGHYYSDLGQLEWEFKAGRLD 281
Query: 837 VVILEDPLAKGKDGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGNRV 1004
VV + PL G SL R + P PQG RYS++G+ V
Sbjct: 282 VVRVPLPLPDG--ASSL-----------RSRVSPGPLPPLEFSPQGSRYSVQGHLV 324
>ref|XP_002702253.1| PREDICTED: primary amine oxidase, lung isozyme-like isoform 2 [Bos
taurus].
Length = 783
Score = 167 bits (423), Expect = 1e-41
Identities = 111/305 (36%), Positives = 153/305 (50%), Gaps = 12/305 (3%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T + +FADLS +EL AV SFL + L + + N +F +E+ LP K
Sbjct: 50 PWTHPGQNQLFADLSREELTAVMSFLTQKLGPDLADAAQARPSDNCIFSVELQLPPKAAA 109
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+ P REA A++FFG Q QPNVTE VGPLP P YMRD+ R G + + R
Sbjct: 110 LAHLDRRSPPPAREALAIVFFGGQPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYYRR 169
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQC--------LTFTDVAPRGLA 638
P+ EY + + F + G H C L APRGL
Sbjct: 170 PVLLREYLDID----------QMIFNRELPQAAGVLHHCCSYKQGGGNLVTMTTAPRGLQ 219
Query: 639 SGQRRTWFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQ 812
SG R TWF L + GY+LHP GLELLVDH + + WT+++V++ G++Y S +L +
Sbjct: 220 SGDRATWFGLYYNISGAGYYLHPVGLELLVDHKALDPAQWTIQKVFFQGRYYESLAQLEE 279
Query: 813 KYNDGEVDVVILEDPLAKGKDGE-SLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSL 989
++ G V+VV++ + G G SL P G P PQG R+S+
Sbjct: 280 QFEAGRVNVVVIPN---NGTGGSWSLKSQV------PPGPTP-----PLQFHPQGTRFSV 325
Query: 990 EGNRV 1004
+G+RV
Sbjct: 326 QGSRV 330
>ref|XP_002702252.1| PREDICTED: primary amine oxidase, lung isozyme-like isoform 1 [Bos
taurus].
Length = 763
Score = 167 bits (423), Expect = 1e-41
Identities = 111/305 (36%), Positives = 153/305 (50%), Gaps = 12/305 (3%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T + +FADLS +EL AV SFL + L + + N +F +E+ LP K
Sbjct: 50 PWTHPGQNQLFADLSREELTAVMSFLTQKLGPDLADAAQARPSDNCIFSVELQLPPKAAA 109
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+ P REA A++FFG Q QPNVTE VGPLP P YMRD+ R G + + R
Sbjct: 110 LAHLDRRSPPPAREALAIVFFGGQPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYYRR 169
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQC--------LTFTDVAPRGLA 638
P+ EY + + F + G H C L APRGL
Sbjct: 170 PVLLREYLDID----------QMIFNRELPQAAGVLHHCCSYKQGGGNLVTMTTAPRGLQ 219
Query: 639 SGQRRTWFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQ 812
SG R TWF L + GY+LHP GLELLVDH + + WT+++V++ G++Y S +L +
Sbjct: 220 SGDRATWFGLYYNISGAGYYLHPVGLELLVDHKALDPAQWTIQKVFFQGRYYESLAQLEE 279
Query: 813 KYNDGEVDVVILEDPLAKGKDGE-SLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSL 989
++ G V+VV++ + G G SL P G P PQG R+S+
Sbjct: 280 QFEAGRVNVVVIPN---NGTGGSWSLKSQV------PPGPTP-----PLQFHPQGTRFSV 325
Query: 990 EGNRV 1004
+G+RV
Sbjct: 326 QGSRV 330
>ref|NP_851345.1| primary amine oxidase, lung isozyme [Bos taurus].
Length = 763
Score = 167 bits (422), Expect = 2e-41
Identities = 111/305 (36%), Positives = 153/305 (50%), Gaps = 12/305 (3%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T + +FADLS +EL AV SFL + L + + N +F +E+ LP K
Sbjct: 50 PWTHPGQNQLFADLSREELTAVMSFLTQKLGPDLVDAAQARPSDNCIFSVELQLPPKAAA 109
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+ P REA A++FFG Q QPNVTE VGPLP P YMRD+ R G + + R
Sbjct: 110 LAHLDRRSPPPAREALAIVFFGGQPQPNVTELVVGPLPQPSYMRDVTVERHGGPLPYYRR 169
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQC--------LTFTDVAPRGLA 638
P+ EY + + F + G H C L APRGL
Sbjct: 170 PVLLREYLDID----------QMIFNRELPQAAGVLHHCCSYKQGGGNLVTMTTAPRGLQ 219
Query: 639 SGQRRTWFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQ 812
SG R TWF L + GY+LHP GLELLVDH + + WT+++V++ G++Y S +L +
Sbjct: 220 SGDRATWFGLYYNISGAGYYLHPVGLELLVDHKALDPAQWTIQKVFFQGRYYESLAQLEE 279
Query: 813 KYNDGEVDVVILEDPLAKGKDGE-SLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSL 989
++ G V+VV++ + G G SL P G P PQG R+S+
Sbjct: 280 QFEAGRVNVVVIPN---NGTGGSWSLKSQV------PPGPTP-----PLQFHPQGTRFSV 325
Query: 990 EGNRV 1004
+G+RV
Sbjct: 326 QGSRV 330
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,862,464
Number of extensions: 1328962
Number of successful extensions: 7333
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7292
Number of HSP's successfully gapped: 9
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003818
(1018 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532759.1| PREDICTED: similar to amiloride binding protein... 429 e-120
Alignment gi|XP_548079.2| PREDICTED: similar to Membrane copper amine oxi... 169 3e-42
Alignment gi|XP_537632.1| PREDICTED: similar to Membrane copper amine oxi... 164 1e-40
Alignment gi|XP_849207.1| PREDICTED: similar to amine oxidase, copper con... 159 4e-39
>ref|XP_532759.1| PREDICTED: similar to amiloride binding protein 1 [Canis familiaris].
Length = 757
Score = 429 bits (1104), Expect = e-120
Identities = 211/293 (72%), Positives = 241/293 (82%), Gaps = 2/293 (0%)
Frame = +3
Query: 144 KAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHVLKFLDK 323
KA VF DLSAQELKAV FLWSQ+EL+LEPS T T+AKNSVFLIEMLLPKKQ++L+FL+K
Sbjct: 34 KARVFKDLSAQELKAVRRFLWSQEELRLEPSRTPTVAKNSVFLIEMLLPKKQNILRFLNK 93
Query: 324 GHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLPPRPGHQVSWASRPISKAEY 503
G R PVREARAVIFFGAQE PNVTEFAVGPLP P YMR+LPPRPGH+ +W SRPI+ AE
Sbjct: 94 GGRPPVREARAVIFFGAQEHPNVTEFAVGPLPWPYYMRELPPRPGHRTTWTSRPITWAES 153
Query: 504 ALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWFILQRQMP 683
LL LQ+ T+PL QFF +TTG SF DC +CLTFTDVAPRGLASG+RR+WFILQR +
Sbjct: 154 VLLGQTLQKTTKPLHQFFLNTTGFSFQDCDSRCLTFTDVAPRGLASGERRSWFILQRSVE 213
Query: 684 GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVDVVILEDPLA 863
GYFLHPTGLELL+DH ST+ QDW VEQVWYNGK Y+SPEELA+KY +G+VDVV+LED
Sbjct: 214 GYFLHPTGLELLIDHRSTDPQDWKVEQVWYNGKLYQSPEELARKYEEGQVDVVVLEDLPP 273
Query: 864 KGKDGESLPEPALFSF*QPRGDF--AVNMHGPHVVQPQGPRYSLEGNRVMYGG 1016
KG+ GES EP LFS +PRG+F ++GP VQPQGPRY LEGN V YGG
Sbjct: 274 KGQGGESTQEPPLFSSYKPRGEFPTPTTVNGPRQVQPQGPRYKLEGNTVHYGG 326
>ref|XP_548079.2| PREDICTED: similar to Membrane copper amine oxidase (Vascular
adhesion protein-1) (VAP-1) (HPAO) [Canis familiaris].
Length = 760
Score = 169 bits (429), Expect = 3e-42
Identities = 112/307 (36%), Positives = 155/307 (50%), Gaps = 14/307 (4%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL AV SFL Q L + N VF +E+ LP K
Sbjct: 47 PWTHPGQSQLFADLSREELTAVMSFLTQQLGPGLVDAAQARPTDNCVFSVELHLPPKAAA 106
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A++FFG Q QPNV+E VGPLP P ++RD+ R G + + R
Sbjct: 107 LAHLDRGSPPPAREALAIVFFGGQPQPNVSELVVGPLPHPTHLRDVTVERHGGPLPYHRR 166
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQC--------LTFTDVAPRGLA 638
P+ EY + + + P + G H C L + APRGL
Sbjct: 167 PVLIREYLDIDQLIFDRELP----------QAAGLLHHCCFYKRQGRNLVTMNTAPRGLQ 216
Query: 639 SGQRRTWFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQ 812
SG R TWF L + G+FLHP GLELLVDH + + WT+++V++ G++Y S L
Sbjct: 217 SGDRATWFGLYYNISGAGFFLHPVGLELLVDHKALDPARWTIQKVFFQGRYYDSLAHLED 276
Query: 813 KYNDGEVDVVILEDPLAKGK---DGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRY 983
++ G V+VV++ D G + P PA P QPQGPR+
Sbjct: 277 QFEAGLVNVVLVPDNGTGGSWSLKSQVPPGPA----------------PPLQFQPQGPRF 320
Query: 984 SLEGNRV 1004
S++G+RV
Sbjct: 321 SVQGSRV 327
>ref|XP_537632.1| PREDICTED: similar to Membrane copper amine oxidase (Vascular
adhesion protein-1) (VAP-1) (HPAO) [Canis familiaris].
Length = 763
Score = 164 bits (416), Expect = 1e-40
Identities = 110/307 (35%), Positives = 153/307 (49%), Gaps = 14/307 (4%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL AV SFL Q L + + N VF +E+ LP K
Sbjct: 50 PWTHPGQSQLFADLSREELTAVMSFLTQQLGPGLVDAAQARPSDNCVFSVELHLPPKAAA 109
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A++FFG Q QPNV+E VGPLP P ++RD+ G + + R
Sbjct: 110 LAHLDRGSPPPAREALAIVFFGGQPQPNVSELVVGPLPHPTHLRDVTVEHHGGPLPYHRR 169
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQC--------LTFTDVAPRGLA 638
P+ EY + + + P + G H C L APRGL
Sbjct: 170 PVLIREYLDIDQLIFDRELP----------QAAGLLHHCCFYKRQGRNLVTMTTAPRGLQ 219
Query: 639 SGQRRTWFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQ 812
SG R TWF L + G+FLHP GLELLVDH + + WT+++V++ G++Y S L
Sbjct: 220 SGDRATWFGLYYNISGAGFFLHPVGLELLVDHKALDPARWTIQKVFFQGRYYDSLAHLED 279
Query: 813 KYNDGEVDVVILEDPLAKGK---DGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRY 983
++ G V+VV++ D G + P PA P PQGPR+
Sbjct: 280 QFEAGLVNVVLVPDNGTGGSWSLKSQVPPGPA----------------PPLQFLPQGPRF 323
Query: 984 SLEGNRV 1004
S++G+RV
Sbjct: 324 SVQGSRV 330
>ref|XP_849207.1| PREDICTED: similar to amine oxidase, copper containing 2 isoform b
[Canis familiaris].
Length = 756
Score = 159 bits (402), Expect = 4e-39
Identities = 107/301 (35%), Positives = 149/301 (49%), Gaps = 8/301 (2%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL AV SFL Q L + + N VF +E+ LP K
Sbjct: 46 PWTHPGQSQLFADLSREELTAVMSFLTQQLGPGLVDAAQARPSDNCVFSVELHLPPKAAA 105
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A++FFG Q QPNV+E VGPLP P ++RD+ R G + + R
Sbjct: 106 LAHLDRGSPPPAREALAIVFFGGQPQPNVSELVVGPLPHPTHLRDVTVERHGGPLPYHRR 165
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRST----TGSSFGDCHEQCLTFTDVAPRGLASGQR 650
P+ AEYA + L+E P F ++ GS+ H P GL SG R
Sbjct: 166 PMLGAEYAQMWKHLKEVELPKAPVFLASVFNYNGSTLAPLH--------ATPSGLRSGDR 217
Query: 651 RTWFILQRQMP--GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYND 824
TW L + G FL GLELL+DH + + W V++V+Y G++Y +L ++
Sbjct: 218 ATWIALYHNISGVGIFLQTVGLELLLDHRALDPAHWAVQRVFYLGRYYADLGQLEWEFKA 277
Query: 825 GEVDVVILEDPLAKGKDG-ESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGNR 1001
G ++VV + PL G +S P P PQG +YS++GN
Sbjct: 278 GRLEVVRVPLPLPNGASSLKSRASPGPLP--------------PLHFSPQGSQYSVQGNL 323
Query: 1002 V 1004
V
Sbjct: 324 V 324
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,497,350
Number of extensions: 1370479
Number of successful extensions: 7636
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7562
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003818
(1018 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001082.2| amiloride-sensitive amine oxidase [copper-conta... 456 e-128
Alignment gi|NP_001149.2| retina-specific copper amine oxidase isoform a ... 169 4e-42
Alignment gi|NP_033720.2| retina-specific copper amine oxidase isoform b ... 169 4e-42
Alignment gi|NP_003725.1| membrane primary amine oxidase precursor [Homo ... 165 5e-41
>ref|NP_001082.2| amiloride-sensitive amine oxidase [copper-containing] precursor [Homo
sapiens].
Length = 751
Score = 456 bits (1174), Expect = e-128
Identities = 226/302 (74%), Positives = 250/302 (82%), Gaps = 2/302 (0%)
Frame = +3
Query: 117 ERSPRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKK 296
E SP T KAGVF+DLS QELKAVHSFLWS+KEL+L+PS T TMAKN+VFLIEMLLPKK
Sbjct: 20 EPSPGTLPRKAGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKNTVFLIEMLLPKK 79
Query: 297 QHVLKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLPPRPGHQVSWA 476
HVL+FLDKG R PVREARAVIFFG QE PNVTEFAVGPLP P YMR L PRPG+Q SWA
Sbjct: 80 YHVLRFLDKGERHPVREARAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGYQSSWA 139
Query: 477 SRPISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRT 656
SRPIS AEYALL H LQEAT+PL QFF +TTG SF DCH++CL FTDVAPRG+ASGQRR+
Sbjct: 140 SRPISTAEYALLYHTLQEATKPLHQFFLNTTGFSFQDCHDRCLAFTDVAPRGVASGQRRS 199
Query: 657 WFILQRQMPGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVD 836
W I+QR + GYFLHPTGLELLVDHGST+A W VEQVWYNGKFY SPEELA+KY DGEVD
Sbjct: 200 WLIIQRYVEGYFLHPTGLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVD 259
Query: 837 VVILEDPLAKGKDGESLPEPALFSF*QPRGDFAVNMH--GPHVVQPQGPRYSLEGNRVMY 1010
VV+LEDPL GK +S EP LFS +PRGDF +H GP +VQP GPR+ LEGN V+Y
Sbjct: 260 VVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLY 319
Query: 1011 GG 1016
GG
Sbjct: 320 GG 321
>ref|NP_001149.2| retina-specific copper amine oxidase isoform a [Homo sapiens].
Length = 729
Score = 169 bits (428), Expect = 4e-42
Identities = 109/294 (37%), Positives = 152/294 (51%), Gaps = 3/294 (1%)
Frame = +3
Query: 135 PGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHVLKF 314
PG ++ +FADLS +EL AV FL + L + + N +F +E+ LP K L
Sbjct: 50 PG-QSQLFADLSREELTAVMRFLTQRLGPGLVDAAQAQPSDNCIFSVELQLPPKAAALAH 108
Query: 315 LDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASRPIS 491
LD+G P REA A++ FG Q QPNV+E VGPLP P YMRD+ R G + + RP+
Sbjct: 109 LDRGSPPPAREALAIVLFGGQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVL 168
Query: 492 KAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWFILQ 671
+AE+ + L+E P F S+T + G L PRGL SG R TW L
Sbjct: 169 RAEFTQMWRHLKEVELPKAPIFLSSTFNYNG----STLAAVHATPRGLRSGDRATWMALY 224
Query: 672 RQMP--GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVDVVI 845
+ G FLHP GLELL+DH + + WTV+QV+Y G +Y +L +++ G ++VV
Sbjct: 225 HNISGVGLFLHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKSGRLEVVR 284
Query: 846 LEDPLAKGKDGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGNRVM 1007
+ PL SL R + P PQG +YS++GN V+
Sbjct: 285 V--PLPPPNGASSL-----------RSRNSPGPLPPLQFSPQGSQYSVQGNLVV 325
>ref|NP_033720.2| retina-specific copper amine oxidase isoform b [Homo sapiens].
Length = 756
Score = 169 bits (428), Expect = 4e-42
Identities = 109/294 (37%), Positives = 152/294 (51%), Gaps = 3/294 (1%)
Frame = +3
Query: 135 PGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHVLKF 314
PG ++ +FADLS +EL AV FL + L + + N +F +E+ LP K L
Sbjct: 50 PG-QSQLFADLSREELTAVMRFLTQRLGPGLVDAAQAQPSDNCIFSVELQLPPKAAALAH 108
Query: 315 LDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASRPIS 491
LD+G P REA A++ FG Q QPNV+E VGPLP P YMRD+ R G + + RP+
Sbjct: 109 LDRGSPPPAREALAIVLFGGQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVL 168
Query: 492 KAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWFILQ 671
+AE+ + L+E P F S+T + G L PRGL SG R TW L
Sbjct: 169 RAEFTQMWRHLKEVELPKAPIFLSSTFNYNG----STLAAVHATPRGLRSGDRATWMALY 224
Query: 672 RQMP--GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVDVVI 845
+ G FLHP GLELL+DH + + WTV+QV+Y G +Y +L +++ G ++VV
Sbjct: 225 HNISGVGLFLHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKSGRLEVVR 284
Query: 846 LEDPLAKGKDGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGNRVM 1007
+ PL SL R + P PQG +YS++GN V+
Sbjct: 285 V--PLPPPNGASSL-----------RSRNSPGPLPPLQFSPQGSQYSVQGNLVV 325
>ref|NP_003725.1| membrane primary amine oxidase precursor [Homo sapiens].
Length = 763
Score = 165 bits (418), Expect = 5e-41
Identities = 113/305 (37%), Positives = 154/305 (50%), Gaps = 12/305 (3%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL AV FL + L + + N VF +E+ LP K
Sbjct: 50 PWTHPGQSQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQLPPKAAA 109
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A++FFG Q QPNV+E VGPLP P YMRD+ R G + + R
Sbjct: 110 LAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRR 169
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQC--------LTFTDVAPRGLA 638
P+ EY + + F + G H C L APRGL
Sbjct: 170 PVLFQEYLDID----------QMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTAPRGLQ 219
Query: 639 SGQRRTWFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQ 812
SG R TWF L + G+FLH GLELLV+H + + WT+++V+Y G++Y S +L
Sbjct: 220 SGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQLEA 279
Query: 813 KYNDGEVDVVILEDPLAKGKDGE-SLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSL 989
++ G V+VV++ D G G SL P P G P PQGPR+S+
Sbjct: 280 QFEAGLVNVVLIPD---NGTGGSWSLKSPV------PPGPAP-----PLQFYPQGPRFSV 325
Query: 990 EGNRV 1004
+G+RV
Sbjct: 326 QGSRV 330
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,606,816
Number of extensions: 1329391
Number of successful extensions: 6839
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6807
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003818
(1018 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155094.1| amiloride-sensitive amine oxidase [copper-co... 399 e-111
Alignment gi|NP_001155093.1| amiloride-sensitive amine oxidase [copper-co... 399 e-111
Alignment gi|NP_083914.2| amiloride-sensitive amine oxidase [copper-conta... 399 e-111
Alignment gi|NP_001025158.1| diamine oxidase-like protein 2 [Mus musculus]. 343 2e-94
Alignment gi|NP_766476.2| seminal vesicle-secreted protein I precursor [M... 330 8e-91
Alignment gi|NP_001074742.2| diamine oxidase-like protein 1 [Mus musculus]. 310 1e-84
Alignment gi|NP_033805.1| membrane primary amine oxidase [Mus musculus]. 167 1e-41
Alignment gi|NP_849263.1| retina-specific copper amine oxidase precursor ... 165 5e-41
>ref|NP_001155094.1| amiloride-sensitive amine oxidase [copper-containing] [Mus musculus].
Length = 756
Score = 399 bits (1024), Expect = e-111
Identities = 198/296 (66%), Positives = 232/296 (78%), Gaps = 2/296 (0%)
Frame = +3
Query: 132 TPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHVLK 311
TP KA +FADLS QE+KAVHSFL S+KEL LE S LT+AKNSVFLIEMLLPKK++VLK
Sbjct: 30 TPHDKARIFADLSPQEIKAVHSFLMSRKELGLESSKNLTLAKNSVFLIEMLLPKKKNVLK 89
Query: 312 FLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLPPRPGHQVSWASRPIS 491
FLD+G + PVREARA+IFFGAQ+ PNVTEFAVGPLP P Y++ L PRPGH +SW+SRPIS
Sbjct: 90 FLDEGRKSPVREARAIIFFGAQDHPNVTEFAVGPLPRPCYVQALSPRPGHHLSWSSRPIS 149
Query: 492 KAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWFILQ 671
AEY LL H L A PL QFF TTG SF C ++ LTFTDVAPRG+ SGQRR+W I+Q
Sbjct: 150 TAEYDLLYHMLNRAITPLHQFFLDTTGFSFLGCDDRFLTFTDVAPRGVESGQRRSWLIVQ 209
Query: 672 RQMPGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVDVVILE 851
R + GYFLHPTGLE+LVDH ST+ QDW VEQ+WYNGKFY SPEELAQKY GEV+ V+LE
Sbjct: 210 RYVEGYFLHPTGLEILVDHSSTDVQDWRVEQLWYNGKFYNSPEELAQKYAVGEVEAVVLE 269
Query: 852 DPLAKGKDGESLPEPALFSF*QPRGDF--AVNMHGPHVVQPQGPRYSLEGNRVMYG 1013
+ + + + +P LFS +PRG+F V + GPHVVQP GPRY LEGN V+YG
Sbjct: 270 EVVLEDPLPGATEQPPLFSSYKPRGEFHTPVTVAGPHVVQPSGPRYKLEGNVVLYG 325
>ref|NP_001155093.1| amiloride-sensitive amine oxidase [copper-containing] [Mus musculus].
Length = 756
Score = 399 bits (1024), Expect = e-111
Identities = 198/296 (66%), Positives = 232/296 (78%), Gaps = 2/296 (0%)
Frame = +3
Query: 132 TPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHVLK 311
TP KA +FADLS QE+KAVHSFL S+KEL LE S LT+AKNSVFLIEMLLPKK++VLK
Sbjct: 30 TPHDKARIFADLSPQEIKAVHSFLMSRKELGLESSKNLTLAKNSVFLIEMLLPKKKNVLK 89
Query: 312 FLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLPPRPGHQVSWASRPIS 491
FLD+G + PVREARA+IFFGAQ+ PNVTEFAVGPLP P Y++ L PRPGH +SW+SRPIS
Sbjct: 90 FLDEGRKSPVREARAIIFFGAQDHPNVTEFAVGPLPRPCYVQALSPRPGHHLSWSSRPIS 149
Query: 492 KAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWFILQ 671
AEY LL H L A PL QFF TTG SF C ++ LTFTDVAPRG+ SGQRR+W I+Q
Sbjct: 150 TAEYDLLYHMLNRAITPLHQFFLDTTGFSFLGCDDRFLTFTDVAPRGVESGQRRSWLIVQ 209
Query: 672 RQMPGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVDVVILE 851
R + GYFLHPTGLE+LVDH ST+ QDW VEQ+WYNGKFY SPEELAQKY GEV+ V+LE
Sbjct: 210 RYVEGYFLHPTGLEILVDHSSTDVQDWRVEQLWYNGKFYNSPEELAQKYAVGEVEAVVLE 269
Query: 852 DPLAKGKDGESLPEPALFSF*QPRGDF--AVNMHGPHVVQPQGPRYSLEGNRVMYG 1013
+ + + + +P LFS +PRG+F V + GPHVVQP GPRY LEGN V+YG
Sbjct: 270 EVVLEDPLPGATEQPPLFSSYKPRGEFHTPVTVAGPHVVQPSGPRYKLEGNVVLYG 325
>ref|NP_083914.2| amiloride-sensitive amine oxidase [copper-containing] [Mus musculus].
Length = 756
Score = 399 bits (1024), Expect = e-111
Identities = 198/296 (66%), Positives = 232/296 (78%), Gaps = 2/296 (0%)
Frame = +3
Query: 132 TPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHVLK 311
TP KA +FADLS QE+KAVHSFL S+KEL LE S LT+AKNSVFLIEMLLPKK++VLK
Sbjct: 30 TPHDKARIFADLSPQEIKAVHSFLMSRKELGLESSKNLTLAKNSVFLIEMLLPKKKNVLK 89
Query: 312 FLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLPPRPGHQVSWASRPIS 491
FLD+G + PVREARA+IFFGAQ+ PNVTEFAVGPLP P Y++ L PRPGH +SW+SRPIS
Sbjct: 90 FLDEGRKSPVREARAIIFFGAQDHPNVTEFAVGPLPRPCYVQALSPRPGHHLSWSSRPIS 149
Query: 492 KAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWFILQ 671
AEY LL H L A PL QFF TTG SF C ++ LTFTDVAPRG+ SGQRR+W I+Q
Sbjct: 150 TAEYDLLYHMLNRAITPLHQFFLDTTGFSFLGCDDRFLTFTDVAPRGVESGQRRSWLIVQ 209
Query: 672 RQMPGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVDVVILE 851
R + GYFLHPTGLE+LVDH ST+ QDW VEQ+WYNGKFY SPEELAQKY GEV+ V+LE
Sbjct: 210 RYVEGYFLHPTGLEILVDHSSTDVQDWRVEQLWYNGKFYNSPEELAQKYAVGEVEAVVLE 269
Query: 852 DPLAKGKDGESLPEPALFSF*QPRGDF--AVNMHGPHVVQPQGPRYSLEGNRVMYG 1013
+ + + + +P LFS +PRG+F V + GPHVVQP GPRY LEGN V+YG
Sbjct: 270 EVVLEDPLPGATEQPPLFSSYKPRGEFHTPVTVAGPHVVQPSGPRYKLEGNVVLYG 325
>ref|NP_001025158.1| diamine oxidase-like protein 2 [Mus musculus].
Length = 723
Score = 343 bits (879), Expect = 2e-94
Identities = 180/291 (61%), Positives = 211/291 (72%), Gaps = 2/291 (0%)
Frame = +3
Query: 144 KAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHVLKFLDK 323
KA VF+DLS QE++AVHSFL + EL+L+PSGT + KNSVFLIE LLP K+ VL+FL+K
Sbjct: 34 KAQVFSDLSIQEMEAVHSFLMGRTELELQPSGTQALDKNSVFLIETLLPNKKVVLEFLNK 93
Query: 324 GHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLPPRPGHQVSWASRPISKAEY 503
G R PVREAR +IFF AQE PNVTEFAVGPLP P YMR+L PRP SWASRP+SKAE
Sbjct: 94 GTRPPVREARVIIFFSAQEHPNVTEFAVGPLPQPIYMRELFPRPEKHRSWASRPMSKAEQ 153
Query: 504 ALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWFILQRQMP 683
+LL HK++EAT PL+ FF TTG S DC+ QCLTFT VAP + S R TWF+LQR +
Sbjct: 154 SLLYHKIKEATTPLKGFFLDTTGFSLEDCNGQCLTFTHVAPHSVESRHRATWFLLQRIVK 213
Query: 684 GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVDVVILEDPLA 863
L PTGLE+LVDHGST+ +DW VEQVWYNGK Y SPEELAQKY DGEVD V+L+D
Sbjct: 214 DRLLQPTGLEVLVDHGSTDIRDWRVEQVWYNGKLYSSPEELAQKYADGEVDTVVLKDLRP 273
Query: 864 KGKDGESLPEPALFSF*QPRGDFAVNMH--GPHVVQPQGPRYSLEGNRVMY 1010
K + LP+ F +P G FA + GPHV Q RY LEGN V+Y
Sbjct: 274 KNTE---LPQ----VFNKPGGKFAAPLRKSGPHVKQANDSRYHLEGNTVIY 317
>ref|NP_766476.2| seminal vesicle-secreted protein I precursor [Mus musculus].
Length = 820
Score = 330 bits (847), Expect = 8e-91
Identities = 167/277 (60%), Positives = 207/277 (74%), Gaps = 2/277 (0%)
Frame = +3
Query: 141 SKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHVLKFLD 320
+K + DLS +EL+AVH+F+ S KEL+L+PS LT+AKNSVFLIEML+PKK VL FLD
Sbjct: 33 TKPQMLWDLSGEELEAVHNFVMSSKELELQPSTLLTLAKNSVFLIEMLMPKKYEVLAFLD 92
Query: 321 KGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLPPRPGHQVSWASRPISKAE 500
KG P+REAR +I+FGAQE PNVTE+AVGP+ P YMR L + G Q+SWASRP+SK E
Sbjct: 93 KGAMLPLREARVLIYFGAQEYPNVTEYAVGPVEQPMYMRKLNRKGGQQLSWASRPMSKVE 152
Query: 501 YALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWFILQRQM 680
ALL H L+ AT+PL++FF TTG + DC+ CLTFT+V PR + G+R +WF+LQR M
Sbjct: 153 SALLLHTLKTATKPLQEFFFDTTGFTLQDCNGGCLTFTNVGPRAMTFGKRHSWFLLQRIM 212
Query: 681 PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVDVVILEDPL 860
YFL PTGLE+L+DHGST+ QDW VEQVWYNGKFY SPEELAQKY DGEVD+V+LEDPL
Sbjct: 213 NDYFLQPTGLEILLDHGSTDVQDWIVEQVWYNGKFYNSPEELAQKYADGEVDIVVLEDPL 272
Query: 861 AKGKDGESLPEPALFSF*QPRGDF--AVNMHGPHVVQ 965
K E P+ FS +P +F ++ GP V+Q
Sbjct: 273 P--KTTEQFPQ---FSTYKPYAEFLMPISKGGPRVIQ 304
>ref|NP_001074742.2| diamine oxidase-like protein 1 [Mus musculus].
Length = 711
Score = 310 bits (794), Expect = 1e-84
Identities = 162/288 (56%), Positives = 197/288 (68%), Gaps = 2/288 (0%)
Frame = +3
Query: 153 VFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHVLKFLDKGHR 332
VFADLS E+K V +FL +KEL+L+PS T T+ KNSV+LIEMLLP K+ VL FLDKG R
Sbjct: 43 VFADLSVYEIKIVQNFLMDKKELQLQPSETPTLGKNSVYLIEMLLPDKEDVLDFLDKGER 102
Query: 333 RPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLPPRPGHQVSWASRPISKAEYALL 512
PVREAR VIFFGAQ+ P VTEFAVGP+P P YMR++ P PGH SWASRPISKAEY+L+
Sbjct: 103 SPVREARVVIFFGAQKHPKVTEFAVGPMPLPIYMREISPGPGHDPSWASRPISKAEYSLI 162
Query: 513 SHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWFILQRQMPGYF 692
L EAT+ L QFF TT S + E LTFT +AP S QR +WF+LQR M +F
Sbjct: 163 YRTLTEATKSLHQFFLDTTDYSLKERVEDYLTFTYMAPDDTKSDQRCSWFMLQRYMESHF 222
Query: 693 LHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVDVVILEDPLAKGK 872
L PTGLE+L+DHGST Q W V+Q+WYNGK Y SPEELAQKY DGEV +++L + + K
Sbjct: 223 LQPTGLEILLDHGSTEVQHWKVKQLWYNGKLYNSPEELAQKYADGEVSILVLTESVDK-- 280
Query: 873 DGESLPEPALFSF*QPRGDFAV--NMHGPHVVQPQGPRYSLEGNRVMY 1010
+P +FS DF +M P V +P Y++E N V Y
Sbjct: 281 ---DTKQPLVFSSSNIPEDFPTTNSMARPRVSEPHVSSYNVEDNTVFY 325
>ref|NP_033805.1| membrane primary amine oxidase [Mus musculus].
Length = 765
Score = 167 bits (423), Expect = 1e-41
Identities = 113/308 (36%), Positives = 155/308 (50%), Gaps = 15/308 (4%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
PRT S++ FADLS +EL AV SFL L + + N VF +E+ LP K
Sbjct: 50 PRTHPSQSQPFADLSPEELTAVMSFLTKHLGPGLVDAAQARPSDNCVFSVELQLPAKAAA 109
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G PVREA A+IFFG Q +PNV+E VGPLP P YMRD+ R G + + R
Sbjct: 110 LAHLDRGGPPPVREALAIIFFGGQPKPNVSELVVGPLPHPSYMRDVTVERHGGPLPYYRR 169
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQC---------LTFTDVAPRGL 635
P+ EY + + F + G H C LT T APRGL
Sbjct: 170 PVLDREYQDIEEMI----------FHRELPQASGLLHHCCFYKHQGQNLLTMT-TAPRGL 218
Query: 636 ASGQRRTWFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELA 809
SG R TWF L + G++ HP GLELL+DH + + WT+++V+Y G++Y S +L
Sbjct: 219 QSGDRATWFGLYYNLSGAGFYPHPIGLELLIDHKALDPALWTIQKVFYQGRYYESLTQLE 278
Query: 810 QKYNDGEVDVVILEDPLAKGK---DGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPR 980
++ G V+VV++ + G P PA P PQGPR
Sbjct: 279 DQFEAGLVNVVLVPNNGTGGSWSLKSSVPPGPA----------------PPLQFHPQGPR 322
Query: 981 YSLEGNRV 1004
+S++G++V
Sbjct: 323 FSVQGSQV 330
>ref|NP_849263.1| retina-specific copper amine oxidase precursor [Mus musculus].
Length = 757
Score = 165 bits (418), Expect = 5e-41
Identities = 108/303 (35%), Positives = 153/303 (50%), Gaps = 10/303 (3%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T S++ +FADL+ +EL AV SFL L + + N VF +E+ LP K
Sbjct: 46 PWTHPSQSQLFADLTPEELTAVMSFLTKHLGPGLVDAAQARPSDNCVFSVELQLPAKAAA 105
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G PVREA A+IFFG Q +PNV+E VGPLP P YMRD+ R G + + R
Sbjct: 106 LAHLDRGGPPPVREALAIIFFGGQPKPNVSELVVGPLPHPSYMRDVTVERHGGPLPYYRR 165
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRST----TGSSFGDCHEQCLTFTDVAPRGLASGQR 650
P+ K E+ + L+E P F ++ GS+ H G +G R
Sbjct: 166 PMQKTEFVQIWRHLKEVELPKAPTFLASVLNYNGSTLAPLHS--------TASGFHAGDR 217
Query: 651 RTWFILQRQMP--GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYND 824
TW L + G FLHP GLELL+DHG+ + DW V+QV+Y G +Y +L ++
Sbjct: 218 ATWIALYHNISGLGVFLHPVGLELLLDHGALDPADWVVQQVFYLGHYYADLAQLEWEFKV 277
Query: 825 GEVDVVILEDPLAKGKDG---ESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEG 995
G ++V+ + P G P+P L P F++ QGP+Y+++G
Sbjct: 278 GRLEVIRVPLPTPGGASSLRPRVTPDPPL-----PPLQFSL----------QGPQYNIQG 322
Query: 996 NRV 1004
N V
Sbjct: 323 NSV 325
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,708,017
Number of extensions: 1094572
Number of successful extensions: 5324
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5305
Number of HSP's successfully gapped: 8
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003818
(1018 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134601.1| PREDICTED: amiloride-sensitive amine oxidase... 614 e-176
Alignment gi|XP_003131440.2| PREDICTED: membrane primary amine oxidase-li... 169 2e-42
Alignment gi|XP_003131441.1| PREDICTED: retina-specific copper amine oxid... 165 3e-41
>ref|XP_003134601.1| PREDICTED: amiloride-sensitive amine oxidase [copper-containing] [Sus
scrofa].
Length = 755
Score = 614 bits (1583), Expect = e-176
Identities = 301/324 (92%), Positives = 301/324 (92%)
Frame = +3
Query: 45 MGRGTXXXXXXXXXXXXXXXXXXXERSPRTPGSKAGVFADLSAQELKAVHSFLWSQKELK 224
MGRGT ERSPRTPG KAGVFADLSAQELKAVHSFLWSQKELK
Sbjct: 1 MGRGTLALGWAGAALLLLQMLAAAERSPRTPGGKAGVFADLSAQELKAVHSFLWSQKELK 60
Query: 225 LEPSGTLTMAKNSVFLIEMLLPKKQHVLKFLDKGHRRPVREARAVIFFGAQEQPNVTEFA 404
LEPSGTLTMAKNSVFLIEMLLPKKQHVLKFLDKGHRRPVREARAVIFFGAQEQPNVTEFA
Sbjct: 61 LEPSGTLTMAKNSVFLIEMLLPKKQHVLKFLDKGHRRPVREARAVIFFGAQEQPNVTEFA 120
Query: 405 VGPLPTPRYMRDLPPRPGHQVSWASRPISKAEYALLSHKLQEATQPLRQFFRSTTGSSFG 584
VGPLPTPRYMRDLPPRPGHQVSWASRPISKAEYALLSHKLQEATQPLRQFFR TTGSSFG
Sbjct: 121 VGPLPTPRYMRDLPPRPGHQVSWASRPISKAEYALLSHKLQEATQPLRQFFRRTTGSSFG 180
Query: 585 DCHEQCLTFTDVAPRGLASGQRRTWFILQRQMPGYFLHPTGLELLVDHGSTNAQDWTVEQ 764
DCHEQCLTFTDVAPRGLASGQRRTWFILQRQMPGYFLHPTGLELLVDHGSTNAQDWTVEQ
Sbjct: 181 DCHEQCLTFTDVAPRGLASGQRRTWFILQRQMPGYFLHPTGLELLVDHGSTNAQDWTVEQ 240
Query: 765 VWYNGKFYRSPEELAQKYNDGEVDVVILEDPLAKGKDGESLPEPALFSF*QPRGDFAVNM 944
VWYNGKFYRSPEELAQKYNDGEVDVVILEDPLAKGKDGESLPEPALFSF QPRGDFAV M
Sbjct: 241 VWYNGKFYRSPEELAQKYNDGEVDVVILEDPLAKGKDGESLPEPALFSFYQPRGDFAVTM 300
Query: 945 HGPHVVQPQGPRYSLEGNRVMYGG 1016
HGPHVVQPQGPRYSLEGNRVMYGG
Sbjct: 301 HGPHVVQPQGPRYSLEGNRVMYGG 324
>ref|XP_003131440.2| PREDICTED: membrane primary amine oxidase-like, partial [Sus scrofa].
Length = 672
Score = 169 bits (429), Expect = 2e-42
Identities = 115/304 (37%), Positives = 160/304 (52%), Gaps = 11/304 (3%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL AV +FL + L + A N +F +E+ LP K
Sbjct: 50 PWTHPGQSQLFADLSREELTAVMNFLTQKLGPGLVDAAQARPADNCIFSVELQLPPKAAA 109
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A+IFFG Q QPNVTE VGPLP P Y+RD+ R G + + R
Sbjct: 110 LAHLDRGSPPPAREALAIIFFGGQPQPNVTELVVGPLPQPSYVRDVTVERHGGPLPYHRR 169
Query: 483 PISKAEYALLSHKL--QEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRT 656
P+ EY + + +E Q SS G + +T T APRG+ SG R T
Sbjct: 170 PVLMREYLDIDQMIFRRELPQAAGLLHHCCFYSSQG---QNLVTMTS-APRGVQSGDRAT 225
Query: 657 WFILQRQM--PGYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGE 830
WF L + G++LHP GLELLVDH + + WT+++V++ G++Y S L +++ G
Sbjct: 226 WFGLYYNISGAGFYLHPVGLELLVDHKALDPALWTIQKVFFQGRYYESLAHLEEQFEAGL 285
Query: 831 VDVVILEDPLAKGKDGE-SL-----PEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLE 992
V+VV++ D G D SL P PA P PQGPR+S++
Sbjct: 286 VNVVVIPD---NGTDASWSLKSRVPPGPA----------------PPLQFYPQGPRFSVQ 326
Query: 993 GNRV 1004
G+RV
Sbjct: 327 GSRV 330
>ref|XP_003131441.1| PREDICTED: retina-specific copper amine oxidase [Sus scrofa].
Length = 755
Score = 165 bits (418), Expect = 3e-41
Identities = 111/296 (37%), Positives = 149/296 (50%), Gaps = 3/296 (1%)
Frame = +3
Query: 126 PRTPGSKAGVFADLSAQELKAVHSFLWSQKELKLEPSGTLTMAKNSVFLIEMLLPKKQHV 305
P T ++ +FADLS +EL AV +FL + L + A N +F +E+ LP K
Sbjct: 46 PWTHPGQSQLFADLSREELTAVMNFLTQKLGPGLVDAAQARPADNCIFSVELQLPPKAAA 105
Query: 306 LKFLDKGHRRPVREARAVIFFGAQEQPNVTEFAVGPLPTPRYMRDLP-PRPGHQVSWASR 482
L LD+G P REA A+IFFG Q QPNVTE VGPLP P Y+RD+ R G + + R
Sbjct: 106 LAHLDRGSPPPAREALAIIFFGGQPQPNVTELVVGPLPQPSYVRDVTVERHGGPLPYHRR 165
Query: 483 PISKAEYALLSHKLQEATQPLRQFFRSTTGSSFGDCHEQCLTFTDVAPRGLASGQRRTWF 662
P+ E A + L+E P F ++ S G L PRGL SG R TW
Sbjct: 166 PVLGNESAQMWKHLKEVELPKAPVFLASVCSYNG----SNLAALHATPRGLRSGDRATWM 221
Query: 663 ILQRQMP--GYFLHPTGLELLVDHGSTNAQDWTVEQVWYNGKFYRSPEELAQKYNDGEVD 836
L + G FLHP GLELL+DH + + W V QV+Y G++Y +L ++ G ++
Sbjct: 222 ALYHNISGVGIFLHPVGLELLLDHRALDPVRWAVRQVFYLGRYYADLGQLEWEFKAGRLE 281
Query: 837 VVILEDPLAKGKDGESLPEPALFSF*QPRGDFAVNMHGPHVVQPQGPRYSLEGNRV 1004
VV + PL G SL R + P PQG RYS++G+ V
Sbjct: 282 VVRVPLPLPDG--ASSL-----------RSRISPGPLPPLQFSPQGSRYSVQGHLV 324
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,726,351
Number of extensions: 862579
Number of successful extensions: 4672
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4656
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003818
(1018 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 1913 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 1913 bits (965), Expect = 0.0
Identities = 977/981 (99%)
Strand = Plus / Plus
Query: 38 cagagccatggggcgggggaccctggccctcggctgggccggcgctgctctcctgctgct 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6744922 cagagccatggggcgggggaccctggccctcggctgggccggcgctgctctcctgctgct 6744981
Query: 98 gcagatgttggccgcagcggagcgctccccacggaccccaggcagcaaggccggggtgtt 157
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6744982 gcagatgttggccgcagcggagcgctccccacggaccccaggcggcaaggccggggtgtt 6745041
Query: 158 tgcggacctgagcgctcaagagctgaaggccgtgcacagcttcctctggtcccagaagga 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745042 tgcggacctgagcgctcaagagctgaaggccgtgcacagcttcctctggtcccagaagga 6745101
Query: 218 gctgaagctggagccgtcgggaacactgaccatggccaagaactccgtattcctcattga 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745102 gctgaagctggagccgtcgggaacactgaccatggccaagaactccgtattcctcattga 6745161
Query: 278 gatgctgctccccaagaagcagcacgtgctgaaatttctggataaaggccacaggcgtcc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745162 gatgctgctccccaagaagcagcacgtgctgaaatttctggataaaggccacaggcgtcc 6745221
Query: 338 cgtgcgggaagctcgggccgtcatcttcttcggagcccaggagcagcccaacgtcaccga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745222 cgtgcgggaagctcgggccgtcatcttcttcggagcccaggagcagcccaacgtcaccga 6745281
Query: 398 gtttgcggtggggccgctgccaacgccccgttacatgcgagacctgcccccgaggccggg 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745282 gtttgcggtggggccgctgccaacgccccgttacatgcgagacctgcccccgaggccggg 6745341
Query: 458 gcaccaggtctcctgggcctccaggcccatctctaaggcagagtatgccctcctgagcca 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745342 gcaccaggtctcctgggcctccaggcccatctctaaggcagagtatgccctcctgagcca 6745401
Query: 518 caagctgcaggaggccacccaacccctgcgccagtttttccgtagcaccacgggctcctc 577
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6745402 caagctgcaggaggccacccaacccctgcgccagtttttccgtcgcaccacgggctcctc 6745461
Query: 578 cttcggagactgccacgagcagtgcctgaccttcaccgacgtggcgccccgcggcttggc 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745462 cttcggagactgccacgagcagtgcctgaccttcaccgacgtggcgccccgcggcttggc 6745521
Query: 638 ctctggccagcgccgcacctggttcatcttgcagcgccaaatgccaggctacttcttgca 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745522 ctctggccagcgccgcacctggttcatcttgcagcgccaaatgccaggctacttcttgca 6745581
Query: 698 ccccacggggctggaactcctggtggatcatggaagcacgaacgcccaagactggacggt 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745582 ccccacggggctggaactcctggtggatcatggaagcacgaacgcccaagactggacggt 6745641
Query: 758 ggagcaggtctggtacaacgggaaattctaccgcagccccgaagagctggcacagaagta 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745642 ggagcaggtctggtacaacgggaaattctaccgcagccccgaagagctggcacagaagta 6745701
Query: 818 taacgatggagaggtggatgtggtgatcctggaggacccccttgccaagggcaaggatgg 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745702 taacgatggagaggtggatgtggtgatcctggaggacccccttgccaagggcaaggatgg 6745761
Query: 878 agagagcctgccagagccagccctcttctctttctaacagccacgtggggactttgccgt 937
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6745762 agagagcctgccagagccagccctcttctctttctaccagccacgtggggactttgccgt 6745821
Query: 938 caacatgcacggcccccacgtggtccagccccagggcccccgctacagcctggagggcaa 997
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6745822 caccatgcacggcccccacgtggtccagccccagggcccccgctacagcctggagggcaa 6745881
Query: 998 cagggtgatgtatgggggctg 1018
|||||||||||||||||||||
Sbjct: 6745882 cagggtgatgtatgggggctg 6745902
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 1 aaggctggcagcagaagtgagcccagagcagagcacacag 40
||||||||||||||||||||||||||||||||||||||||
Sbjct: 6741244 aaggctggcagcagaagtgagcccagagcagagcacacag 6741283
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,185,667
Number of extensions: 185
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 2
Length of query: 1018
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 997
Effective length of database: 2,808,413,156
Effective search space: 2799987916532
Effective search space used: 2799987916532
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)